RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for H1F1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049539

Ensembl transcript IDs: ENSMUST00000055770.4

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp AGGACACGCCACTGCGCTCTTTGGAAGAAGAAACTGCCTGCACGATaGGCTCCGACACCGAAGGTCCCGCGGGCTTCTTCCGAGGAGCGG +
Preference number: 5 (lower is better)
Translates to: RTRHCALWKKKLPAR*APTPKVPRASSEER
Trigger: CCGCTCCTCGGAAGAAGCCCGCGGGACCTTCGGTGTCGGAGCTCATCGTGCAGGCAGTTTCTTCTTCCAAAGAGCGCAGTGGCGTGTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CCA 90 bp TGGCTACCTTCTTGGCCTTCACCACCTTCGGCTTCTTGGGGCTCTTaGAAGTCTTCTTGGAAACTGCAGGCTTCTTGGGCTTCTTCGGAG +
Preference number: 5 (lower is better)
Translates to: WLPSWPSPPSASWGS*KSSWKLQASWASSE
Trigger: CTCCGAAGAAGCCCAAGAAGCCTGCAGTTTCCAAGAAGACTTCCAAGAGCCCCAAGAAGCCGAAGGTGGTGAAGGCCAAGAAGGTAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CCA 90 bp CAGGGCTTTTGGCTACCTTCTTGGCCTTCACCACCTTCGGCTTCTTaGGGCTCTTGGAAGTCTTCTTGGAAACTGCAGGCTTCTTGGGCT +
Preference number: 5 (lower is better)
Translates to: QGFWLPSWPSPPSAS*GSWKSSWKLQASWA
Trigger: AGCCCAAGAAGCCTGCAGTTTCCAAGAAGACTTCCAAGAGCCCCAAGAAGCCGAAGGTGGTGAAGGCCAAGAAGGTAGCCAAAAGCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS GCA 90 bp CACCACCTTCGGCTTCTTGGGGCTCTTGGAAGTCTTCTTGGAAACTaGAGGCTTCTTGGGCTTCTTCGGAGTCTTGACAGTCTTCTTAGC +
Preference number: 5 (lower is better)
Translates to: HHLRLLGALGSLLGN*RLLGLLRSLDSLLS
Trigger: GCTAAGAAGACTGTCAAGACTCCGAAGAAGCCCAAGAAGCCTGCAGTTTCCAAGAAGACTTCCAAGAGCCCCAAGAAGCCGAAGGTGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CAA 72 bp TTCTCCACATCGTATCCCGCCGCAGCCAGCGACTTCTaGAGCGCGGCCAAGGACACGCCACTGCGCTCTTTG +
Preference number: 6 (lower is better)
Translates to: FSTSYPAAASDF*SAAKDTPLRSL
Trigger: CAAAGAGCGCAGTGGCGTGTCCTTGGCCGCGCTCAAGAAGTCGCTGGCTGCGGCGGGATACGATGTGGAGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CAA 90 bp GGTCCCGCGGGCTTCTTCCGAGGAGCGGCAGCTTTTGCCGGCTTCTaGGTCTTCTTTGCAGCAGCAGGTTTCTCCGTGGCAGTAGAAGCA +
Preference number: 6 (lower is better)
Translates to: GPAGFFRGAAAFAGF*VFFAAAGFSVAVEA
Trigger: TGCTTCTACTGCCACGGAGAAACCTGCTGCTGCAAAGAAGACCAAGAAGCCGGCAAAAGCTGCCGCTCCTCGGAAGAAGCCCGCGGGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CAA 90 bp GCCAGCGACTTCTTGAGCGCGGCCAAGGACACGCCACTGCGCTCTTaGGAAGAAGAAACTGCCTGCACGATGAGCTCCGACACCGAAGGT +
Preference number: 6 (lower is better)
Translates to: ASDFLSAAKDTPLRS*EEETACTMSSDTEG
Trigger: ACCTTCGGTGTCGGAGCTCATCGTGCAGGCAGTTTCTTCTTCCAAAGAGCGCAGTGGCGTGTCCTTGGCCGCGCTCAAGAAGTCGCTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS TCA 72 bp CACTGCGCTCTTTGGAAGAAGAAACTGCCTGCACGATaGGCTCCGACACCGAAGGTCCCGCGGGCTTCTTCC +
Preference number: 6 (lower is better)
Translates to: HCALWKKKLPAR*APTPKVPRASS
Trigger: GGAAGAAGCCCGCGGGACCTTCGGTGTCGGAGCTCATCGTGCAGGCAGTTTCTTCTTCCAAAGAGCGCAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS GCA 72 bp AGGTCCCGCGGGCTTCTTCCGAGGAGCGGCAGCTTTTaGCGGCTTCTTGGTCTTCTTTGCAGCAGCAGGTTT +
Preference number: 6 (lower is better)
Translates to: RSRGLLPRSGSF*RLLGLLCSSRF
Trigger: AAACCTGCTGCTGCAAAGAAGACCAAGAAGCCGGCAAAAGCTGCCGCTCCTCGGAAGAAGCCCGCGGGACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CAA 72 bp AAGGTCCCGCGGGCTTCTTCCGAGGAGCGGCAGCTTTaGCCGGCTTCTTGGTCTTCTTTGCAGCAGCAGGTT +
Preference number: 6 (lower is better)
Translates to: KVPRASSEERQL*PASWSSLQQQV
Trigger: AACCTGCTGCTGCAAAGAAGACCAAGAAGCCGGCAAAAGCTGCCGCTCCTCGGAAGAAGCCCGCGGGACCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CAA 90 bp GCCTTGGAAGCCTTAGGCTTCACTGCCTTCGCCTTGGCAGGGCTTTaGGCTACCTTCTTGGCCTTCACCACCTTCGGCTTCTTGGGGCTC +
Preference number: 6 (lower is better)
Translates to: ALEALGFTAFALAGL*ATFLAFTTFGFLGL
Trigger: GAGCCCCAAGAAGCCGAAGGTGGTGAAGGCCAAGAAGGTAGCCAAAAGCCCTGCCAAGGCGAAGGCAGTGAAGCCTAAGGCTTCCAAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CAA 72 bp GGCTTCTTCCGAGGAGCGGCAGCTTTTGCCGGCTTCTaGGTCTTCTTTGCAGCAGCAGGTTTCTCCGTGGCA +
Preference number: 6 (lower is better)
Translates to: GFFRGAAAFAGF*VFFAAAGFSVA
Trigger: TGCCACGGAGAAACCTGCTGCTGCAAAGAAGACCAAGAAGCCGGCAAAAGCTGCCGCTCCTCGGAAGAAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CAA 72 bp TTCTTGAGCGCGGCCAAGGACACGCCACTGCGCTCTTaGGAAGAAGAAACTGCCTGCACGATGAGCTCCGAC +
Preference number: 6 (lower is better)
Translates to: FLSAAKDTPLRS*EEETACTMSSD
Trigger: GTCGGAGCTCATCGTGCAGGCAGTTTCTTCTTCCAAAGAGCGCAGTGGCGTGTCCTTGGCCGCGCTCAAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CAA 72 bp GACACCTTGGTGGTGATGGCCTTGGACTCAGCCTTCTaGTTCAGCTTAAAAGAGCCAGCAGCGCCGGTGCCC +
Preference number: 6 (lower is better)
Translates to: DTLVVMALDSAF*FSLKEPAAPVP
Trigger: GGGCACCGGCGCTGCTGGCTCTTTTAAGCTGAACAAGAAGGCTGAGTCCAAGGCCATCACCACCAAGGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CAA 72 bp GCCTTAGGCTTCACTGCCTTCGCCTTGGCAGGGCTTTaGGCTACCTTCTTGGCCTTCACCACCTTCGGCTTC +
Preference number: 6 (lower is better)
Translates to: ALGFTAFALAGL*ATFLAFTTFGF
Trigger: GAAGCCGAAGGTGGTGAAGGCCAAGAAGGTAGCCAAAAGCCCTGCCAAGGCGAAGGCAGTGAAGCCTAAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS GCA 72 bp AGGAGCGGCAGCTTTTGCCGGCTTCTTGGTCTTCTTTaGAGCAGCAGGTTTCTCCGTGGCAGTAGAAGCAGC +
Preference number: 6 (lower is better)
Translates to: RSGSFCRLLGLL*SSRFLRGSRSS
Trigger: GCTGCTTCTACTGCCACGGAGAAACCTGCTGCTGCAAAGAAGACCAAGAAGCCGGCAAAAGCTGCCGCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CAA 90 bp GCAGGGCTTTTGGCTACCTTCTTGGCCTTCACCACCTTCGGCTTCTaGGGGCTCTTGGAAGTCTTCTTGGAAACTGCAGGCTTCTTGGGC +
Preference number: 6 (lower is better)
Translates to: AGLLATFLAFTTFGF*GLLEVFLETAGFLG
Trigger: GCCCAAGAAGCCTGCAGTTTCCAAGAAGACTTCCAAGAGCCCCAAGAAGCCGAAGGTGGTGAAGGCCAAGAAGGTAGCCAAAAGCCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CAA 90 bp TTAGGCTTCACTGCCTTCGCCTTGGCAGGGCTTTTGGCTACCTTCTaGGCCTTCACCACCTTCGGCTTCTTGGGGCTCTTGGAAGTCTTC +
Preference number: 6 (lower is better)
Translates to: LGFTAFALAGLLATF*AFTTFGFLGLLEVF
Trigger: GAAGACTTCCAAGAGCCCCAAGAAGCCGAAGGTGGTGAAGGCCAAGAAGGTAGCCAAAAGCCCTGCCAAGGCGAAGGCAGTGAAGCCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS TCA 72 bp AGGTTTCTTAGCAGCCCCGGATGCTTTCGCCTTCACTaGCACCTTGGTGGTGATGGCCTTGGACTCAGCCTT +
Preference number: 6 (lower is better)
Translates to: RFLSSPGCFRLH*HLGGDGLGLSL
Trigger: AAGGCTGAGTCCAAGGCCATCACCACCAAGGTGTCAGTGAAGGCGAAAGCATCCGGGGCTGCTAAGAAACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CCA 72 bp TCTTGGCCTTCACCACCTTCGGCTTCTTGGGGCTCTTaGAAGTCTTCTTGGAAACTGCAGGCTTCTTGGGCT +
Preference number: 6 (lower is better)
Translates to: SWPSPPSASWGS*KSSWKLQASWA
Trigger: AGCCCAAGAAGCCTGCAGTTTCCAAGAAGACTTCCAAGAGCCCCAAGAAGCCGAAGGTGGTGAAGGCCAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CCA 72 bp TGGCTACCTTCTTGGCCTTCACCACCTTCGGCTTCTTaGGGCTCTTGGAAGTCTTCTTGGAAACTGCAGGCT +
Preference number: 6 (lower is better)
Translates to: WLPSWPSPPSAS*GSWKSSWKLQA
Trigger: AGCCTGCAGTTTCCAAGAAGACTTCCAAGAGCCCCAAGAAGCCGAAGGTGGTGAAGGCCAAGAAGGTAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CAA 72 bp ACCACCTTCGGCTTCTTGGGGCTCTTGGAAGTCTTCTaGGAAACTGCAGGCTTCTTGGGCTTCTTCGGAGTC +
Preference number: 6 (lower is better)
Translates to: TTFGFLGLLEVF*ETAGFLGFFGV
Trigger: GACTCCGAAGAAGCCCAAGAAGCCTGCAGTTTCCAAGAAGACTTCCAAGAGCCCCAAGAAGCCGAAGGTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CAA 72 bp TTGGCTACCTTCTTGGCCTTCACCACCTTCGGCTTCTaGGGGCTCTTGGAAGTCTTCTTGGAAACTGCAGGC +
Preference number: 6 (lower is better)
Translates to: LATFLAFTTFGF*GLLEVFLETAG
Trigger: GCCTGCAGTTTCCAAGAAGACTTCCAAGAGCCCCAAGAAGCCGAAGGTGGTGAAGGCCAAGAAGGTAGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CAA 90 bp GGCTTCTTGGGGCTCTTGGAAGTCTTCTTGGAAACTGCAGGCTTCTaGGGCTTCTTCGGAGTCTTGACAGTCTTCTTAGCTGCAGCCCCA +
Preference number: 6 (lower is better)
Translates to: GFLGLLEVFLETAGF*GFFGVLTVFLAAAP
Trigger: TGGGGCTGCAGCTAAGAAGACTGTCAAGACTCCGAAGAAGCCCAAGAAGCCTGCAGTTTCCAAGAAGACTTCCAAGAGCCCCAAGAAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CAA 90 bp TTGGCTACCTTCTTGGCCTTCACCACCTTCGGCTTCTTGGGGCTCTaGGAAGTCTTCTTGGAAACTGCAGGCTTCTTGGGCTTCTTCGGA +
Preference number: 6 (lower is better)
Translates to: LATFLAFTTFGFLGL*EVFLETAGFLGFFG
Trigger: TCCGAAGAAGCCCAAGAAGCCTGCAGTTTCCAAGAAGACTTCCAAGAGCCCCAAGAAGCCGAAGGTGGTGAAGGCCAAGAAGGTAGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS GCA 72 bp CTTTGTCACTTTCGCCTTGGAAGCCTTAGGCTTCACTaGCTTCGCCTTGGCAGGGCTTTTGGCTACCTTCTT +
Preference number: 6 (lower is better)
Translates to: LCHFRLGSLRLH*LRLGRAFGYLL
Trigger: AAGAAGGTAGCCAAAAGCCCTGCCAAGGCGAAGGCAGTGAAGCCTAAGGCTTCCAAGGCGAAAGTGACAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CAA 72 bp TTGGAAACTGCAGGCTTCTTGGGCTTCTTCGGAGTCTaGACAGTCTTCTTAGCTGCAGCCCCAGCAGTCTTC +
Preference number: 6 (lower is better)
Translates to: LETAGFLGFFGV*TVFLAAAPAVF
Trigger: GAAGACTGCTGGGGCTGCAGCTAAGAAGACTGTCAAGACTCCGAAGAAGCCCAAGAAGCCTGCAGTTTCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS GCA 72 bp CTTGGGCTTCTTCGGAGTCTTGACAGTCTTCTTAGCTaGAGCCCCAGCAGTCTTCTTAGGTTTCTTAGCAGC +
Preference number: 6 (lower is better)
Translates to: LGLLRSLDSLLS*SPSSLLRFLSS
Trigger: GCTGCTAAGAAACCTAAGAAGACTGCTGGGGCTGCAGCTAAGAAGACTGTCAAGACTCCGAAGAAGCCCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4
CDS CAA 90 bp GAAGTCTTCTTGGAAACTGCAGGCTTCTTGGGCTTCTTCGGAGTCTaGACAGTCTTCTTAGCTGCAGCCCCAGCAGTCTTCTTAGGTTTC +
Preference number: 6 (lower is better)
Translates to: EVFLETAGFLGFFGV*TVFLAAAPAVFLGF
Trigger: GAAACCTAAGAAGACTGCTGGGGCTGCAGCTAAGAAGACTGTCAAGACTCCGAAGAAGCCCAAGAAGCCTGCAGTTTCCAAGAAGACTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055770.4