Pregenerated sensors for GZMK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042385Ensembl transcript IDs: ENSMUST00000038212.14, ENSMUST00000122399.8, ENSMUST00000140324.2
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGACGCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTaGCAGATCCAGGAAAATCTCAATGTGCAATCTCAATGTGCACGT | + |
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Preference number: 1 (lower is better) Translates to: GRQVCKRILEKEASD*QIQENLNVQSQCAR Trigger: ACGTGCACATTGAGATTGCACATTGAGATTTTCCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGCGTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR TCA 90 bp | AAGAGGACGCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTaGCTGGCAGATCCAGGAAAATCTCAATGTGCAATCTCAATGTGC | + |
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Preference number: 1 (lower is better) Translates to: KRTPGLQAHPGKRSK*LADPGKSQCAISMC Trigger: GCACATTGAGATTGCACATTGAGATTTTCCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGCGTCCTCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR CAA 90 bp | ACAGTGACTTCTCTCAGGGTATCAGAGGCGGTTAACAGATCTGGCTaGGTGGTTCCCCAGCCAGTCACCTGGCATTTGGTCCCATCTCTA | + |
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Preference number: 2 (lower is better) Translates to: TVTSLRVSEAVNRSG*VVPQPVTWHLVPSL Trigger: TAGAGATGGGACCAAATGCCAGGTGACTGGCTGGGGAACCACCAAGCCAGATCTGTTAACCGCCTCTGATACCCTGAGAGAAGTCACTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR-3UTR CCA 90 bp | TCCATCCCAGCTGTTCCATGCCCTCCCTATAGCCAGCTGCCTCTGAAGAGGACGAAAGAAGCAAGTGACTaGCAGATCCAGGAAAATCTC | + |
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Preference number: 2 (lower is better) Translates to: SIPAVPCPPYSQLPLKRTKEASD*QIQENL Trigger: GAGATTTTCCTGGATCTGCCAGTCACTTGCTTCTTT...CGTCCTCTTCAGAGGCAGCTGGCTATAGGGAGGGCATGGAACAGCTGGGATGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| 3UTR-3UTR TCA 90 bp | GCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGTTTTTGGATCCCAGGTaGAGCAGTTGGACATTCTTG | + |
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Preference number: 2 (lower is better) Translates to: ARSASASWKKKQVTGRSRFLDPR*SSWTFL Trigger: CAAGAATGTCCAACTGCTTCACCTGGGATCCAAAAA...CCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR-3UTR TCA 90 bp | AGAAACAGAAATCCATCCCAGCTGTTCCATGCCCTCCCTATAGCCAGCTGCCTCGGAAAAAGAAGCAAGTaGCTGGCAGATCCAGGAAAA | + |
|
Preference number: 2 (lower is better) Translates to: RNRNPSQLFHALPIASCLGKRSK*LADPGK Trigger: TTTTCCTGGATCTGCCAGTCACTTGCTTCTTTTTCC...GAGGCAGCTGGCTATAGGGAGGGCATGGAACAGCTGGGATGGATTTCTGTTTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| 3UTR-3UTR CCA 90 bp | AGCCCTGAGAGACTAGGGCATGGAAGATGCCTTTGCAGATCAAAGGGCCACCAGCAAATGTCTGCTTCATaGGCTCATTCTTGGAAAGAG | + |
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Preference number: 2 (lower is better) Translates to: SPERLGHGRCLCRSKGHQQMSAS*AHSWKE Trigger: CTCTTTCCAAGAATGAGCCCATGAAGCAGACATTTG...CTGGTGGCCCTTTGATCTGCAAAGGCATCTTCCATGCCCTAGTCTCTCAGGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR-3UTR CCA 90 bp | CACATTTATAGCCCTGAGAGACTAGGGCATGGAAGATGCCTTTGCAGATCAAAGCCCCAGCCAGTCACCTaGCATTTGGTCCCATCTCTA | + |
|
Preference number: 2 (lower is better) Translates to: HIYSPERLGHGRCLCRSKPQPVT*HLVPSL Trigger: TAGAGATGGGACCAAATGCCAGGTGACTGGCTGGGG...CTTTGATCTGCAAAGGCATCTTCCATGCCCTAGTCTCTCAGGGCTATAAATGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR-3UTR GCA 90 bp | GCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGTTAATTTCAAATGTCTaGTTCATGGGCTCATTCTTG | + |
|
Preference number: 2 (lower is better) Translates to: ARSASASWKKKQVTGRSRLISNV*FMGSFL Trigger: CAAGAATGAGCCCATGAAGCAGACATTTGAAATTAA...CCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR-3UTR TCA 90 bp | CACATTTATAGCCCTGAGAGACTAGGGCATGGAAGATGCCTTTGCAGATCAAAGGGAAAAAGAAGCAAGTaGCTGGCAGATCCAGGAAAA | + |
|
Preference number: 2 (lower is better) Translates to: HIYSPERLGHGRCLCRSKGKRSK*LADPGK Trigger: TTTTCCTGGATCTGCCAGTCACTTGCTTCTTTTTCC...CTTTGATCTGCAAAGGCATCTTCCATGCCCTAGTCTCTCAGGGCTATAAATGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR-3UTR CCA 90 bp | AGAGTCACCCTTGCAGGAATCCTTTTGACCTCTGGCATCTCCTGCACATATCATAAAGAAGCAAGTGACTaGCAGATCCAGGAAAATCTC | + |
|
Preference number: 2 (lower is better) Translates to: RVTLAGILLTSGISCTYHKEASD*QIQENL Trigger: GAGATTTTCCTGGATCTGCCAGTCACTTGCTTCTTT...ATGATATGTGCAGGAGATGCCAGAGGTCAAAAGGATTCCTGCAAGGGTGACTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR-3UTR CCA 90 bp | CACATTTATAGCCCTGAGAGACTAGGGCATGGAAGATGCCTTTGCAGATCAAAGAATCCTTTTGACCTCTaGCATCTCCTGCACATATCA | + |
|
Preference number: 2 (lower is better) Translates to: HIYSPERLGHGRCLCRSKNPFDL*HLLHIS Trigger: TGATATGTGCAGGAGATGCCAGAGGTCAAAAGGATT...CTTTGATCTGCAAAGGCATCTTCCATGCCCTAGTCTCTCAGGGCTATAAATGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR-3UTR CCA 90 bp | GTTGTAGTAGCTTTGGCTGTTACAGCGTTTTCTACTTATGATGGTAACAGTGACTCATGGGCTCATTCTTaGAAAGAGAATGTGCTCCTA | + |
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Preference number: 2 (lower is better) Translates to: VVVALAVTAFSTYDGNSDSWAHS*KENVLL Trigger: TAGGAGCACATTCTCTTTCCAAGAATGAGCCCATGA...GTCACTGTTACCATCATAAGTAGAAAACGCTGTAACAGCCAAAGCTACTACAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR CAA 90 bp | ACATATCATGTCCTTGGTTATAACAGGTTTGTGGTTGTAGTAGCTTaGGCTGTTACAGCGTTTTCTACTTATGATGGTAACAGTGACTTC | + |
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Preference number: 2 (lower is better) Translates to: TYHVLGYNRFVVVVA*AVTAFSTYDGNSDF Trigger: GAAGTCACTGTTACCATCATAAGTAGAAAACGCTGTAACAGCCAAAGCTACTACAACCACAAACCTGTTATAACCAAGGACATGATATGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR TCA 72 bp | CAGCTGTTCCATGCCCTCCCTATAGCCAGCTGCCTCTaGAGAGGACGCCAGGTCTGCAAGCGCATCCTGGAA | + |
|
Preference number: 3 (lower is better) Translates to: QLFHALPIASCL*RGRQVCKRILE Trigger: TTCCAGGATGCGCTTGCAGACCTGGCGTCCTCTTCAGAGGCAGCTGGCTATAGGGAGGGCATGGAACAGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| 3UTR-3UTR CAA 90 bp | GCCACCAGAGTCACCCTTGCAGGAATCCTTTTGACCTCTGGCATCTCCTGCACAGTTAACAGATCTGGCTaGGTGGTTCCCCAGCCAGTC | + |
|
Preference number: 3 (lower is better) Translates to: ATRVTLAGILLTSGISCTVNRSG*VVPQPV Trigger: GACTGGCTGGGGAACCACCAAGCCAGATCTGTTAAC...TGTGCAGGAGATGCCAGAGGTCAAAAGGATTCCTGCAAGGGTGACTCTGGTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR-3UTR CAA 90 bp | GCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGCTTGCAGGAATCCTTTaGACCTCTGGCATCTCCTGC | + |
|
Preference number: 3 (lower is better) Translates to: ARSASASWKKKQVTGRSRLAGIL*TSGISC Trigger: GCAGGAGATGCCAGAGGTCAAAAGGATTCCTGCAAG...CCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR CCA 72 bp | GCCTCTGAAGAGGACGCCAGGTCTGCAAGCGCATCCTaGAAAAAGAAGCAAGTGACTGGCAGATCCAGGAAA | + |
|
Preference number: 3 (lower is better) Translates to: ASEEDARSASAS*KKKQVTGRSRK Trigger: TTTCCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGCGTCCTCTTCAGAGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| 3UTR-3UTR CAA 90 bp | GCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGGGGGCAAGCTTGCTTTaGATCCAGGTCTGGTATTTC | + |
|
Preference number: 3 (lower is better) Translates to: ARSASASWKKKQVTGRSRGASLL*IQVWYF Trigger: GAAATACCAGACCTGGATCAAAAGCAAGCTTGCCCC...CCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGC 53% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR-3UTR CAA 90 bp | GCCACCAGAGTCACCCTTGCAGGAATCCTTTTGACCTCTGGCATCTCCTGCACATTCATGGGCTCATTCTaGGAAAGAGAATGTGCTCCT | + |
|
Preference number: 3 (lower is better) Translates to: ATRVTLAGILLTSGISCTFMGSF*ERECAP Trigger: AGGAGCACATTCTCTTTCCAAGAATGAGCCCATGAA...TGTGCAGGAGATGCCAGAGGTCAAAAGGATTCCTGCAAGGGTGACTCTGGTGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR TCA 72 bp | CCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTaGCTGGCAGATCCAGGAAAATCTCAATGTGCAATC | + |
|
Preference number: 3 (lower is better) Translates to: PGLQAHPGKRSK*LADPGKSQCAI Trigger: GATTGCACATTGAGATTTTCCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 ENSMUST00000140324.2 |
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| 3UTR GCA 72 bp | AAGCAAGTGACTGGCAGATCCAGGAAAATCTCAATGTaGAATCTCAATGTGCACGTGATGGGGCAAGCTTGC | + |
|
Preference number: 3 (lower is better) Translates to: KQVTGRSRKISM*NLNVHVMGQAC Trigger: GCAAGCTTGCCCCATCACGTGCACATTGAGATTGCACATTGAGATTTTCCTGGATCTGCCAGTCACTTGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR CCA 72 bp | GTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTaGCAGATCCAGGAAAATCTCAATGTGCAATCTCAA | + |
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Preference number: 3 (lower is better) Translates to: VCKRILEKEASD*QIQENLNVQSQ Trigger: TTGAGATTGCACATTGAGATTTTCCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR TCA 72 bp | CATGATGTCATGCGATGCGGAACCGGACTGAAGTCGTaGGAATGGGATGAACTTTTTAATTTCAAATGTCTG | + |
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Preference number: 3 (lower is better) Translates to: HDVMRCGTGLKS*EWDELFNFKCL Trigger: CAGACATTTGAAATTAAAAAGTTCATCCCATTCTCACGACTTCAGTCCGGTTCCGCATCGCATGACATCATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| CDS-3UTR CCA 90 bp | TCCATCCCAGCTGTTCCATGCCCTCCCTATAGCCAGCTGCCTCTGAAGAGGACGCTCCTAAAACCACGGTaGGAGAGTGGCCTCTGGGAA | + |
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Preference number: 4 (lower is better) Translates to: SIPAVPCPPYSQLPLKRTLLKPR*ESGLWE Trigger: TTCCCAGAGGCCACTCTCCCACCGTGGTTTTAGGAG...CGTCCTCTTCAGAGGCAGCTGGCTATAGGGAGGGCATGGAACAGCTGGGATGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR CCA 90 bp | AGCCCTGAGAGACTAGGGCATGGAAGATGCCTTTGCAGATCAAAGGGCCACCAGGGCCTGGAATGCGGCTaGACTTCCCTCCCTCCAATA | + |
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Preference number: 4 (lower is better) Translates to: SPERLGHGRCLCRSKGHQGLECG*TSLPPI Trigger: TATTGGAGGGAGGGAAGTCCAGCCGCATTCCAGGCC...CTGGTGGCCCTTTGATCTGCAAAGGCATCTTCCATGCCCTAGTCTCTCAGGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| CDS-3UTR CCA 90 bp | GCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGACCACGGTGGGAGAGTaGCCTCTGGGAAACCAAGAG | + |
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Preference number: 4 (lower is better) Translates to: ARSASASWKKKQVTGRSRTTVGE*PLGNQE Trigger: CTCTTGGTTTCCCAGAGGCCACTCTCCCACCGTGGT...CCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR CCA 90 bp | AGAAACAGAAATCCATCCCAGCTGTTCCATGCCCTCCCTATAGCCAGCTGCCTCGGCCTGGAATGCGGCTaGACTTCCCTCCCTCCAATA | + |
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Preference number: 4 (lower is better) Translates to: RNRNPSQLFHALPIASCLGLECG*TSLPPI Trigger: TATTGGAGGGAGGGAAGTCCAGCCGCATTCCAGGCC...GAGGCAGCTGGCTATAGGGAGGGCATGGAACAGCTGGGATGGATTTCTGTTTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038212.14 |
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| CDS-3UTR CCA 90 bp | GCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGCTCCTAAAACCACGGTaGGAGAGTGGCCTCTGGGAA | + |
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Preference number: 4 (lower is better) Translates to: ARSASASWKKKQVTGRSRLLKPR*ESGLWE Trigger: TTCCCAGAGGCCACTCTCCCACCGTGGTTTTAGGAG...CCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR CCA 90 bp | GCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGACAGATCTGGCTTGGTaGTTCCCCAGCCAGTCACCT | + |
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Preference number: 4 (lower is better) Translates to: ARSASASWKKKQVTGRSRTDLAW*FPSQSP Trigger: AGGTGACTGGCTGGGGAACCACCAAGCCAGATCTGT...CCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR CCA 90 bp | CGCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGACAGATCTGGCTTGGTaGTTCCCCAGCCAGTCACCT | + |
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Preference number: 4 (lower is better) Translates to: RQVCKRILEKEASDWQIQTDLAW*FPSQSP Trigger: AGGTGACTGGCTGGGGAACCACCAAGCCAGATCTGT...CTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR GCA 90 bp | CGCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGATAAATGGCCTGGAATaGGGCTGGACTTCCCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: RQVCKRILEKEASDWQIQINGLE*GWTSLP Trigger: AGGGAGGGAAGTCCAGCCGCATTCCAGGCCATTTAT...CTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGCG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000140324.2 |
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| CDS-3UTR GCA 90 bp | GCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGATAAATGGCCTGGAATaGGGCTGGACTTCCCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: ARSASASWKKKQVTGRSRINGLE*GWTSLP Trigger: AGGGAGGGAAGTCCAGCCGCATTCCAGGCCATTTAT...CCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000140324.2 |
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| CDS-3UTR CCA 90 bp | AGAAACAGAAATCCATCCCAGCTGTTCCATGCCCTCCCTATAGCCAGCTGCCTCGATGGACGCCATAAATaGCCTGGAATGCGGCTGGAC | + |
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Preference number: 4 (lower is better) Translates to: RNRNPSQLFHALPIASCLDGRHK*PGMRLD Trigger: GTCCAGCCGCATTCCAGGCCATTTATGGCGTCCATC...GAGGCAGCTGGCTATAGGGAGGGCATGGAACAGCTGGGATGGATTTCTGTTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038212.14 |
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| CDS-3UTR CCA 90 bp | CGCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGTGCTTGCTGCGGTACTaGATGGACGCCATAAATGGC | + |
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Preference number: 4 (lower is better) Translates to: RQVCKRILEKEASDWQIQCLLRY*MDAING Trigger: GCCATTTATGGCGTCCATCCAGTACCGCAGCAAGCA...CTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGCG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000140324.2 |
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| CDS-3UTR CCA 90 bp | CAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGAAACCACGGTGGGAGAGTaGCCTCTGGGAAACCAAGAG | + |
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Preference number: 4 (lower is better) Translates to: QVCKRILEKEASDWQIQETTVGE*PLGNQE Trigger: CTCTTGGTTTCCCAGAGGCCACTCTCCCACCGTGGT...TTCCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR CCA 90 bp | AGAAACAGAAATCCATCCCAGCTGTTCCATGCCCTCCCTATAGCCAGCTGCCTCCCCCAGCCAGTCACCTaGCATTTGGTCCCATCTCTA | + |
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Preference number: 4 (lower is better) Translates to: RNRNPSQLFHALPIASCLPQPVT*HLVPSL Trigger: TAGAGATGGGACCAAATGCCAGGTGACTGGCTGGGG...GAGGCAGCTGGCTATAGGGAGGGCATGGAACAGCTGGGATGGATTTCTGTTTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR GCA 90 bp | GCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGCATGGAAGATGCCTTTaGAGATCAAAGGGCCACCAG | + |
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Preference number: 4 (lower is better) Translates to: ARSASASWKKKQVTGRSRHGRCL*RSKGHQ Trigger: CTGGTGGCCCTTTGATCTGCAAAGGCATCTTCCATG...CCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR CCA 90 bp | AGAAACAGAAATCCATCCCAGCTGTTCCATGCCCTCCCTATAGCCAGCTGCCTCTGGGAGAGTGGCCTCTaGGAAACCAAGAGTAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: RNRNPSQLFHALPIASCLWESGL*ETKSSS Trigger: ACTGCTACTCTTGGTTTCCCAGAGGCCACTCTCCCA...GAGGCAGCTGGCTATAGGGAGGGCATGGAACAGCTGGGATGGATTTCTGTTTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR CCA 90 bp | CAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGAATGGGAGAGTGGCCTCTaGGAAACCAAGAGTAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: QVCKRILEKEASDWQIQEWESGL*ETKSSS Trigger: ACTGCTACTCTTGGTTTCCCAGAGGCCACTCTCCCA...TTCCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR TCA 90 bp | CGCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGTTTTTGGATCCCAGGTaGAGCAGTTGGACATTCTTG | + |
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Preference number: 4 (lower is better) Translates to: RQVCKRILEKEASDWQIQFLDPR*SSWTFL Trigger: CAAGAATGTCCAACTGCTTCACCTGGGATCCAAAAA...CTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGCG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR GCA 90 bp | CAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGAACTAGGGCATGGAAGATaGCTTTGCAGATCAAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: QVCKRILEKEASDWQIQELGHGR*LCRSKG Trigger: GCCCTTTGATCTGCAAAGGCATCTTCCATGCCCTAG...TTCCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR TCA 90 bp | AGAAACAGAAATCCATCCCAGCTGTTCCATGCCCTCCCTATAGCCAGCTGCCTCTTTTTGGATCCCAGGTaGAGCAGTTGGACATTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: RNRNPSQLFHALPIASCLFLDPR*SSWTFL Trigger: CAAGAATGTCCAACTGCTTCACCTGGGATCCAAAAA...GAGGCAGCTGGCTATAGGGAGGGCATGGAACAGCTGGGATGGATTTCTGTTTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR CCA 90 bp | ATGTCTGCTTCATGGGCTCATTCTTGGAAAGAGAATGTGCTCCTAAAACCACGGGATGGACGCCATAAATaGCCTGGAATGCGGCTGGAC | + |
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Preference number: 4 (lower is better) Translates to: MSASWAHSWKENVLLKPRDGRHK*PGMRLD Trigger: GTCCAGCCGCATTCCAGGCCATTTATGGCGTCCATC...CCGTGGTTTTAGGAGCACATTCTCTTTCCAAGAATGAGCCCATGAAGCAGACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| CDS-3UTR CCA 90 bp | GCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGAATCCTTTTGACCTCTaGCATCTCCTGCACATATCA | + |
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Preference number: 4 (lower is better) Translates to: ARSASASWKKKQVTGRSRNPFDL*HLLHIS Trigger: TGATATGTGCAGGAGATGCCAGAGGTCAAAAGGATT...CCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR CCA 90 bp | GCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGAGATTCCAGGCTTTTTaGCGATGCCACATTTATAGC | + |
|
Preference number: 4 (lower is better) Translates to: ARSASASWKKKQVTGRSRRFQAF*RCHIYS Trigger: GCTATAAATGTGGCATCGCCAAAAAGCCTGGAATCT...CCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR TCA 90 bp | AGAAACAGAAATCCATCCCAGCTGTTCCATGCCCTCCCTATAGCCAGCTGCCTCAGTATGGAAACACTCTaGAGACATATAAACGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: RNRNPSQLFHALPIASCLSMETL*RHINAS Trigger: GCTGGCGTTTATATGTCTTCAGAGTGTTTCCATACT...GAGGCAGCTGGCTATAGGGAGGGCATGGAACAGCTGGGATGGATTTCTGTTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038212.14 |
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| CDS-3UTR CCA 90 bp | AGAAACAGAAATCCATCCCAGCTGTTCCATGCCCTCCCTATAGCCAGCTGCCTCTCATGGGCTCATTCTTaGAAAGAGAATGTGCTCCTA | + |
|
Preference number: 4 (lower is better) Translates to: RNRNPSQLFHALPIASCLSWAHS*KENVLL Trigger: TAGGAGCACATTCTCTTTCCAAGAATGAGCCCATGA...GAGGCAGCTGGCTATAGGGAGGGCATGGAACAGCTGGGATGGATTTCTGTTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR CCA 90 bp | TCCATCCCAGCTGTTCCATGCCCTCCCTATAGCCAGCTGCCTCTGAAGAGGACGCTTTTGATCCAGGTCTaGTATTTCTTAGTTAATAGC | + |
|
Preference number: 4 (lower is better) Translates to: SIPAVPCPPYSQLPLKRTLLIQV*YFLVNS Trigger: GCTATTAACTAAGAAATACCAGACCTGGATCAAAAG...CGTCCTCTTCAGAGGCAGCTGGCTATAGGGAGGGCATGGAACAGCTGGGATGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR CCA 90 bp | CAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGAACAAATGTCTGCTTCATaGGCTCATTCTTGGAAAGAG | + |
|
Preference number: 4 (lower is better) Translates to: QVCKRILEKEASDWQIQEQMSAS*AHSWKE Trigger: CTCTTTCCAAGAATGAGCCCATGAAGCAGACATTTG...TTCCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR CCA 90 bp | CAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGAAAATCCTTTTGACCTCTaGCATCTCCTGCACATATCA | + |
|
Preference number: 4 (lower is better) Translates to: QVCKRILEKEASDWQIQENPFDL*HLLHIS Trigger: TGATATGTGCAGGAGATGCCAGAGGTCAAAAGGATT...TTCCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR CCA 90 bp | TTCTTGACATCCATGCAGACAAACACAGACGTCCACATTTTATTTAGGATGAACCCCCAGCCAGTCACCTaGCATTTGGTCCCATCTCTA | + |
|
Preference number: 4 (lower is better) Translates to: FLTSMQTNTDVHILFRMNPQPVT*HLVPSL Trigger: TAGAGATGGGACCAAATGCCAGGTGACTGGCTGGGG...GTTCATCCTAAATAAAATGTGGACGTCTGTGTTTGTCTGCATGGATGTCAAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000122399.8 |
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| CDS-3UTR CCA 90 bp | AGAAACAGAAATCCATCCCAGCTGTTCCATGCCCTCCCTATAGCCAGCTGCCTCCTTTTGATCCAGGTCTaGTATTTCTTAGTTAATAGC | + |
|
Preference number: 4 (lower is better) Translates to: RNRNPSQLFHALPIASCLLLIQV*YFLVNS Trigger: GCTATTAACTAAGAAATACCAGACCTGGATCAAAAG...GAGGCAGCTGGCTATAGGGAGGGCATGGAACAGCTGGGATGGATTTCTGTTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR TCA 90 bp | TATAGATTCCAGGCTTTTTGGCGATGCCACATTTATAGCCCTGAGAGACTAGGGAGTATGGAAACACTCTaGAGACATATAAACGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: YRFQAFWRCHIYSPERLGSMETL*RHINAS Trigger: GCTGGCGTTTATATGTCTTCAGAGTGTTTCCATACT...CCCTAGTCTCTCAGGGCTATAAATGTGGCATCGCCAAAAAGCCTGGAATCTATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| CDS-3UTR GCA 90 bp | TTCTTGACATCCATGCAGACAAACACAGACGTCCACATTTTATTTAGGATGAACCTAGGGCATGGAAGATaGCTTTGCAGATCAAAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: FLTSMQTNTDVHILFRMNLGHGR*LCRSKG Trigger: GCCCTTTGATCTGCAAAGGCATCTTCCATGCCCTAG...GTTCATCCTAAATAAAATGTGGACGTCTGTGTTTGTCTGCATGGATGTCAAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122399.8 |
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| 3UTR CAA 72 bp | CAATCTCAATGTGCACGTGATGGGGCAAGCTTGCTTTaGATCCAGGTCTGGTATTTCTTAGTTAATAGCGTA | + |
|
Preference number: 4 (lower is better) Translates to: QSQCARDGASLL*IQVWYFLVNSV Trigger: TACGCTATTAACTAAGAAATACCAGACCTGGATCAAAAGCAAGCTTGCCCCATCACGTGCACATTGAGATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| 3UTR CAA 72 bp | AATGTGCAATCTCAATGTGCACGTGATGGGGCAAGCTaGCTTTTGATCCAGGTCTGGTATTTCTTAGTTAAT | + |
|
Preference number: 4 (lower is better) Translates to: NVQSQCARDGAS*LLIQVWYFLVN Trigger: ATTAACTAAGAAATACCAGACCTGGATCAAAAGCAAGCTTGCCCCATCACGTGCACATTGAGATTGCACATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140324.2 |
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| CDS-3UTR CCA 90 bp | TTCTTGACATCCATGCAGACAAACACAGACGTCCACATTTTATTTAGGATGAACAGATTCCAGGCTTTTTaGCGATGCCACATTTATAGC | + |
|
Preference number: 4 (lower is better) Translates to: FLTSMQTNTDVHILFRMNRFQAF*RCHIYS Trigger: GCTATAAATGTGGCATCGCCAAAAAGCCTGGAATCT...GTTCATCCTAAATAAAATGTGGACGTCTGTGTTTGTCTGCATGGATGTCAAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000122399.8 |
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| CDS-3UTR GCA 90 bp | TTCTTGACATCCATGCAGACAAACACAGACGTCCACATTTTATTTAGGATGAACTTAATTTCAAATGTCTaGTTCATGGGCTCATTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: FLTSMQTNTDVHILFRMNLISNV*FMGSFL Trigger: CAAGAATGAGCCCATGAAGCAGACATTTGAAATTAA...GTTCATCCTAAATAAAATGTGGACGTCTGTGTTTGTCTGCATGGATGTCAAGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122399.8 |
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| CDS CCA 90 bp | TGTGGGTGGATCAGGACTCCTCCACAAATATGCTTGCTGCGGTACTaGATGGACGCCATAAATGGCCTGGAATGCGGCTGGACTTCCCTC | + |
|
Preference number: 5 (lower is better) Translates to: CGWIRTPPQICLLRY*MDAINGLECGWTSL Trigger: GAGGGAAGTCCAGCCGCATTCCAGGCCATTTATGGCGTCCATCCAGTACCGCAGCAAGCATATTTGTGGAGGAGTCCTGATCCACCCACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000140324.2 |
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| CDS-3UTR CAA 90 bp | GCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGGTTAACAGATCTGGCTaGGTGGTTCCCCAGCCAGTC | + |
|
Preference number: 5 (lower is better) Translates to: ARSASASWKKKQVTGRSRVNRSG*VVPQPV Trigger: GACTGGCTGGGGAACCACCAAGCCAGATCTGTTAAC...CCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR CAA 90 bp | CGCCAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGCGTGATGGGGCAAGCTaGCTTTTGATCCAGGTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: RQVCKRILEKEASDWQIQRDGAS*LLIQVW Trigger: CCAGACCTGGATCAAAAGCAAGCTTGCCCCATCACG...CTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTGGCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR CAA 90 bp | CAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGAAGTTAACAGATCTGGCTaGGTGGTTCCCCAGCCAGTC | + |
|
Preference number: 5 (lower is better) Translates to: QVCKRILEKEASDWQIQEVNRSG*VVPQPV Trigger: GACTGGCTGGGGAACCACCAAGCCAGATCTGTTAAC...TTCCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR CAA 90 bp | AGAAACAGAAATCCATCCCAGCTGTTCCATGCCCTCCCTATAGCCAGCTGCCTCGGGGCAAGCTTGCTTTaGATCCAGGTCTGGTATTTC | + |
|
Preference number: 5 (lower is better) Translates to: RNRNPSQLFHALPIASCLGASLL*IQVWYF Trigger: GAAATACCAGACCTGGATCAAAAGCAAGCTTGCCCC...GAGGCAGCTGGCTATAGGGAGGGCATGGAACAGCTGGGATGGATTTCTGTTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS CCA 90 bp | TCCTCCACAAATATGCTTGCTGCGGTACTGGATGGACGCCATAAATaGCCTGGAATGCGGCTGGACTTCCCTCCCTCCAATAATTTCAGT | + |
|
Preference number: 5 (lower is better) Translates to: SSTNMLAAVLDGRHK*PGMRLDFPPSNNFS Trigger: ACTGAAATTATTGGAGGGAGGGAAGTCCAGCCGCATTCCAGGCCATTTATGGCGTCCATCCAGTACCGCAGCAAGCATATTTGTGGAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000140324.2 |
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| CDS CCA 90 bp | TTGCTGCGGTACTGGATGGACGCCATAAATGGCCTGGAATGCGGCTaGACTTCCCTCCCTCCAATAATTTCAGTATGGAAACACTCTGAA | + |
|
Preference number: 5 (lower is better) Translates to: LLRYWMDAINGLECG*TSLPPIISVWKHSE Trigger: TTCAGAGTGTTTCCATACTGAAATTATTGGAGGGAGGGAAGTCCAGCCGCATTCCAGGCCATTTATGGCGTCCATCCAGTACCGCAGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000140324.2 |
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| CDS-3UTR CAA 90 bp | CAGGTCTGCAAGCGCATCCTGGAAAAAGAAGCAAGTGACTGGCAGATCCAGGAATTCATGGGCTCATTCTaGGAAAGAGAATGTGCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: QVCKRILEKEASDWQIQEFMGSF*ERECAP Trigger: AGGAGCACATTCTCTTTCCAAGAATGAGCCCATGAA...TTCCTGGATCTGCCAGTCACTTGCTTCTTTTTCCAGGATGCGCTTGCAGACCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000122399.8 |
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| CDS-3UTR CAA 90 bp | TTCTTGACATCCATGCAGACAAACACAGACGTCCACATTTTATTTAGGATGAACCGTGATGGGGCAAGCTaGCTTTTGATCCAGGTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: FLTSMQTNTDVHILFRMNRDGAS*LLIQVW Trigger: CCAGACCTGGATCAAAAGCAAGCTTGCCCCATCACG...GTTCATCCTAAATAAAATGTGGACGTCTGTGTTTGTCTGCATGGATGTCAAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000122399.8 |
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| CDS-3UTR CAA 90 bp | TTCTTGACATCCATGCAGACAAACACAGACGTCCACATTTTATTTAGGATGAACTTCATGGGCTCATTCTaGGAAAGAGAATGTGCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: FLTSMQTNTDVHILFRMNFMGSF*ERECAP Trigger: AGGAGCACATTCTCTTTCCAAGAATGAGCCCATGAA...GTTCATCCTAAATAAAATGTGGACGTCTGTGTTTGTCTGCATGGATGTCAAGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122399.8 |
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| CDS GCA 72 bp | ACCCACTGTGGGTGGATCAGGACTCCTCCACAAATATaGTTGCTGCGGTACTGGATGGACGCCATAAATGGC | + |
|
Preference number: 6 (lower is better) Translates to: THCGWIRTPPQI*LLRYWMDAING Trigger: GCCATTTATGGCGTCCATCCAGTACCGCAGCAAGCATATTTGTGGAGGAGTCCTGATCCACCCACAGTGGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000140324.2 |
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| CDS CCA 72 bp | AATATGCTTGCTGCGGTACTGGATGGACGCCATAAATaGCCTGGAATGCGGCTGGACTTCCCTCCCTCCAAT | + |
|
Preference number: 6 (lower is better) Translates to: NMLAAVLDGRHK*PGMRLDFPPSN Trigger: ATTGGAGGGAGGGAAGTCCAGCCGCATTCCAGGCCATTTATGGCGTCCATCCAGTACCGCAGCAAGCATATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000140324.2 |
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| CDS CCA 72 bp | ATCAGGACTCCTCCACAAATATGCTTGCTGCGGTACTaGATGGACGCCATAAATGGCCTGGAATGCGGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: IRTPPQICLLRY*MDAINGLECGW Trigger: CCAGCCGCATTCCAGGCCATTTATGGCGTCCATCCAGTACCGCAGCAAGCATATTTGTGGAGGAGTCCTGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000140324.2 |
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| CDS CAA 72 bp | CACTGTGGGTGGATCAGGACTCCTCCACAAATATGCTaGCTGCGGTACTGGATGGACGCCATAAATGGCCTG | + |
|
Preference number: 6 (lower is better) Translates to: HCGWIRTPPQIC*LRYWMDAINGL Trigger: CAGGCCATTTATGGCGTCCATCCAGTACCGCAGCAAGCATATTTGTGGAGGAGTCCTGATCCACCCACAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000140324.2 |
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| CDS CCA 72 bp | TACTGGATGGACGCCATAAATGGCCTGGAATGCGGCTaGACTTCCCTCCCTCCAATAATTTCAGTATGGAAA | + |
|
Preference number: 6 (lower is better) Translates to: YWMDAINGLECG*TSLPPIISVWK Trigger: TTTCCATACTGAAATTATTGGAGGGAGGGAAGTCCAGCCGCATTCCAGGCCATTTATGGCGTCCATCCAGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038212.14 ENSMUST00000140324.2 |
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