Pregenerated sensors for GZMD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059256Ensembl transcript IDs: ENSMUST00000082093.7
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGGTTATTTATTGTGAATTTTCATTCTTTGCTGCCCACTCCACATaGTTCTTGCCTGAGGTCGGACAGGCTGGTCAGGCACGGGTGGTT | + |
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Preference number: 1 (lower is better) Translates to: EVIYCEFSFFAAHST*FLPEVGQAGQARVV Trigger: AACCACCCGTGCCTGACCAGCCTGTCCGACCTCAGGCAAGAACCATGTGGAGTGGGCAGCAAAGAATGAAAATTCACAATAAATAACCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| 3UTR CAA 90 bp | CAGCTCTATGCACTCTGGAGGTTATTTATTGTGAATTTTCATTCTTaGCTGCCCACTCCACATGGTTCTTGCCTGAGGTCGGACAGGCTG | + |
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Preference number: 2 (lower is better) Translates to: QLYALWRLFIVNFHS*LPTPHGSCLRSDRL Trigger: CAGCCTGTCCGACCTCAGGCAAGAACCATGTGGAGTGGGCAGCAAAGAATGAAAATTCACAATAAATAACCTCCAGAGTGCATAGAGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| 3UTR CCA 72 bp | TATTGTGAATTTTCATTCTTTGCTGCCCACTCCACATaGTTCTTGCCTGAGGTCGGACAGGCTGGTCAGGCA | + |
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Preference number: 3 (lower is better) Translates to: YCEFSFFAAHST*FLPEVGQAGQA Trigger: TGCCTGACCAGCCTGTCCGACCTCAGGCAAGAACCATGTGGAGTGGGCAGCAAAGAATGAAAATTCACAATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| CDS-3UTR TCA 90 bp | TTGCTGCCCACTCCACATGGTTCTTGCCTGAGGTCGGACAGGCTGGTCAGGCACGAGCTGTTTTTGCAGTaGGCAGCCGTCAGCACAAAG | + |
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Preference number: 4 (lower is better) Translates to: LLPTPHGSCLRSDRLVRHELFLQ*AAVSTK Trigger: CTTTGTGCTGACGGCTGCTCACTGCAAAAACAGCTC...GTGCCTGACCAGCCTGTCCGACCTCAGGCAAGAACCATGTGGAGTGGGCAGCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| CDS-3UTR GCA 90 bp | CATTCTTTGCTGCCCACTCCACATGGTTCTTGCCTGAGGTCGGACAGGCTGGTCGGACAGAGCTGTTTTTaGAGTGAGCAGCCGTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: HSLLPTPHGSCLRSDRLVGQSCF*SEQPSA Trigger: TGCTGACGGCTGCTCACTGCAAAAACAGCTCTGTCC...GACCAGCCTGTCCGACCTCAGGCAAGAACCATGTGGAGTGGGCAGCAAAGAATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| CDS-3UTR TCA 90 bp | CATTCTTTGCTGCCCACTCCACATGGTTCTTGCCTGAGGTCGGACAGGCTGGTCCCCCCGAGTCACCCTTaGAAGGAGTCTTTATTTTCT | + |
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Preference number: 4 (lower is better) Translates to: HSLLPTPHGSCLRSDRLVPPSHP*KESLFS Trigger: AGAAAATAAAGACTCCTTTCAAGGGTGACTCGGGGG...GACCAGCCTGTCCGACCTCAGGCAAGAACCATGTGGAGTGGGCAGCAAAGAATG 53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| CDS-3UTR TCA 90 bp | ATTGTGAATTTTCATTCTTTGCTGCCCACTCCACATGGTTCTTGCCTGAGGTCGTCCTGGATGACCAGTTaGACCTCTCGCAGGCGGGCA | + |
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Preference number: 4 (lower is better) Translates to: IVNFHSLLPTPHGSCLRSSWMTS*TSRRRA Trigger: TGCCCGCCTGCGAGAGGTTCAACTGGTCATCCAGGA...CGACCTCAGGCAAGAACCATGTGGAGTGGGCAGCAAAGAATGAAAATTCACAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| CDS-3UTR TCA 90 bp | AATTTTCATTCTTTGCTGCCCACTCCACATGGTTCTTGCCTGAGGTCGGACAGGCTTTTGCCACAGGGATaGTCTGCTGTGTCTCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: NFHSLLPTPHGSCLRSDRLLPQG*SAVSPP Trigger: AGGAGGAGACACAGCAGATCATCCCTGTGGCAAAAG...CCTGTCCGACCTCAGGCAAGAACCATGTGGAGTGGGCAGCAAAGAATGAAAATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| CDS-3UTR CCA 90 bp | TTCTTTGCTGCCCACTCCACATGGTTCTTGCCTGAGGTCGGACAGGCTGGTCAGACTGTCATTGAGCTTTaGACAGAGCTGTTTTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: FFAAHSTWFLPEVGQAGQTVIEL*TELFLQ Trigger: CTGCAAAAACAGCTCTGTCCAAAGCTCAATGACAGT...CTGACCAGCCTGTCCGACCTCAGGCAAGAACCATGTGGAGTGGGCAGCAAAGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| CDS-3UTR TCA 90 bp | TTTATTGTGAATTTTCATTCTTTGCTGCCCACTCCACATGGTTCTTGCCTGAGGGTCATTGATGGACCTTaGCCCCCAGCCAGCCACACT | + |
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Preference number: 4 (lower is better) Translates to: FIVNFHSLLPTPHGSCLRVIDGP*PPASHT Trigger: AGTGTGGCTGGCTGGGGGTCAAGGTCCATCAATGAC...CCTCAGGCAAGAACCATGTGGAGTGGGCAGCAAAGAATGAAAATTCACAATAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| CDS-3UTR TCA 90 bp | TTCTTTGCTGCCCACTCCACATGGTTCTTGCCTGAGGTCGGACAGGCTGGTCAGCTTAGTGAAGATTCCTaGAGAGATTGTTCCGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: FFAAHSTWFLPEVGQAGQLSEDS*RDCSVF Trigger: AAAAACGGAACAATCTCTTCAGGAATCTTCACTAAG...CTGACCAGCCTGTCCGACCTCAGGCAAGAACCATGTGGAGTGGGCAGCAAAGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| CDS-3UTR GCA 90 bp | AATTTTCATTCTTTGCTGCCCACTCCACATGGTTCTTGCCTGAGGTCGGACAGGATGGGGAATGTCTTTTaGCACAGGGATGATCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: NFHSLLPTPHGSCLRSDRMGNVF*HRDDLL Trigger: CAGCAGATCATCCCTGTGGCAAAAGACATTCCCCAT...CCTGTCCGACCTCAGGCAAGAACCATGTGGAGTGGGCAGCAAAGAATGAAAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| 3UTR CAA 72 bp | GCACTCTGGAGGTTATTTATTGTGAATTTTCATTCTTaGCTGCCCACTCCACATGGTTCTTGCCTGAGGTCG | + |
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Preference number: 4 (lower is better) Translates to: ALWRLFIVNFHS*LPTPHGSCLRS Trigger: CGACCTCAGGCAAGAACCATGTGGAGTGGGCAGCAAAGAATGAAAATTCACAATAAATAACCTCCAGAGTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| CDS-3UTR CAA 90 bp | CTGCCCACTCCACATGGTTCTTGCCTGAGGTCGGACAGGCTGGTCAGGCACGGGTTGGATCTGGGCAACTaGAGGGGTCTCACAGCTTTA | + |
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Preference number: 5 (lower is better) Translates to: LPTPHGSCLRSDRLVRHGLDLGN*RGLTAL Trigger: TAAAGCTGTGAGACCCCTCAAGTTGCCCAGATCCAA...CCCGTGCCTGACCAGCCTGTCCGACCTCAGGCAAGAACCATGTGGAGTGGGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| CDS TCA 90 bp | CTCCTCCTTAGCCGTGATGTTGTGGGCCCCCAGTGTGACTGTCATTaGGCTTTGGACAGAGCTGTTTTTGCAGTGAGCAGCCGTCAGCAC | + |
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Preference number: 5 (lower is better) Translates to: LLLSRDVVGPQCDCH*ALDRAVFAVSSRQH Trigger: GTGCTGACGGCTGCTCACTGCAAAAACAGCTCTGTCCAAAGCTCAATGACAGTCACACTGGGGGCCCACAACATCACGGCTAAGGAGGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| CDS-3UTR CAA 90 bp | TCTTTGCTGCCCACTCCACATGGTTCTTGCCTGAGGTCGGACAGGCTGGTCAGGACAGCTTTAGTTCTCTaGGCCTTACTCTCCAGCTTT | + |
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Preference number: 5 (lower is better) Translates to: SLLPTPHGSCLRSDRLVRTALVL*ALLSSF Trigger: AAAGCTGGAGAGTAAGGCCAAGAGAACTAAAGCTGT...CCTGACCAGCCTGTCCGACCTCAGGCAAGAACCATGTGGAGTGGGCAGCAAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| CDS-3UTR CAA 90 bp | GTGAATTTTCATTCTTTGCTGCCCACTCCACATGGTTCTTGCCTGAGGTCGGACGATGCTTTAGTGTCATaGATGGACCTTGACCCCCAG | + |
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Preference number: 5 (lower is better) Translates to: VNFHSLLPTPHGSCLRSDDALVS*MDLDPQ Trigger: CTGGGGGTCAAGGTCCATCAATGACACTAAAGCATC...GTCCGACCTCAGGCAAGAACCATGTGGAGTGGGCAGCAAAGAATGAAAATTCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| CDS-3UTR CAA 90 bp | ATTGTGAATTTTCATTCTTTGCTGCCCACTCCACATGGTTCTTGCCTGAGGTCGAGTCCATATGCTTGGTaGTCACACACAAGGGGTCCC | + |
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Preference number: 5 (lower is better) Translates to: IVNFHSLLPTPHGSCLRSSPYAW*SHTRGP Trigger: GGGACCCCTTGTGTGTGACAACCAAGCATATGGACT...CGACCTCAGGCAAGAACCATGTGGAGTGGGCAGCAAAGAATGAAAATTCACAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| CDS TCA 72 bp | AGCCGTGATGTTGTGGGCCCCCAGTGTGACTGTCATTaGGCTTTGGACAGAGCTGTTTTTGCAGTGAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: SRDVVGPQCDCH*ALDRAVFAVSS Trigger: GCTGCTCACTGCAAAAACAGCTCTGTCCAAAGCTCAATGACAGTCACACTGGGGGCCCACAACATCACGGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| CDS GCA 72 bp | TCTGGATGGGGAATGTCTTTTGCCACAGGGATGATCTaGTGTGTCTCCTCCTTAGCCGTGATGTTGTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: SGWGMSFATGMI*CVSSLAVMLWA Trigger: GGCCCACAACATCACGGCTAAGGAGGAGACACAGCAGATCATCCCTGTGGCAAAAGACATTCCCCATCCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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| CDS CCA 72 bp | CATGATGTCACTGTAGAAGATAGTAGCATTATAATCTaGATGGGGAATGTCTTTTGCCACAGGGATGATCTG | + |
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Preference number: 6 (lower is better) Translates to: HDVTVEDSSIII*MGNVFCHRDDL Trigger: CAGATCATCCCTGTGGCAAAAGACATTCCCCATCCAGATTATAATGCTACTATCTTCTACAGTGACATCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000082093.7 |
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