Pregenerated sensors for GYPC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090523Ensembl transcript IDs: ENSMUST00000172434.3, ENSMUST00000174000.2, ENSMUST00000174459.2
Found 93 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGTTTCCTGGCAGGCACCCAGTGTTCTGCAGTAAGAGTCTTGGGGTaGCCTTGGGGGCTTCCTGGTGCTGATAATGGTGGCACACAGCGG | + |
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Preference number: 1 (lower is better) Translates to: GFLAGTQCSAVRVLG*PWGLPGADNGGTQR Trigger: CCGCTGTGTGCCACCATTATCAGCACCAGGAAGCCCCCAAGGGCACCCCAAGACTCTTACTGCAGAACACTGGGTGCCTGCCAGGAAACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR GCA 90 bp | GGGAGACCTGGGTATCCAGATGTTCTCTCTTCCTTGCGAAGCCAATaGCACTGGGTGGCCACTGAGTCCCTGGAAGAGTGCTCTGGGCCT | + |
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Preference number: 1 (lower is better) Translates to: GRPGYPDVLSSLRSQ*HWVATESLEECSGP Trigger: AGGCCCAGAGCACTCTTCCAGGGACTCAGTGGCCACCCAGTGGCATTGGCTTCGCAAGGAAGAGAGAACATCTGGATACCCAGGTCTCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR CCA 90 bp | GGTATCCAGATGTTCTCTCTTCCTTGCGAAGCCAATGCCACTGGGTaGCCACTGAGTCCCTGGAAGAGTGCTCTGGGCCTTGACTCCTCC | + |
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Preference number: 1 (lower is better) Translates to: GIQMFSLPCEANATG*PLSPWKSALGLDSS Trigger: GGAGGAGTCAAGGCCCAGAGCACTCTTCCAGGGACTCAGTGGCCACCCAGTGGCATTGGCTTCGCAAGGAAGAGAGAACATCTGGATACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR GCA 90 bp | TGCATTGCCCAGGGAGACCTGGGTATCCAGATGTTCTCTCTTCCTTaGGAAGCCAATGCCACTGGGTGGCCACTGAGTCCCTGGAAGAGT | + |
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Preference number: 1 (lower is better) Translates to: CIAQGDLGIQMFSLP*EANATGWPLSPWKS Trigger: ACTCTTCCAGGGACTCAGTGGCCACCCAGTGGCATTGGCTTCGCAAGGAAGAGAGAACATCTGGATACCCAGGTCTCCCTGGGCAATGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR TCA 90 bp | CAGACCACCTCATGCACACTGAGGAGGACTTCCATGCTGGTGAGATaGTACCTGCATTGCCCAGGGAGACCTGGGTATCCAGATGTTCTC | + |
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Preference number: 1 (lower is better) Translates to: QTTSCTLRRTSMLVR*YLHCPGRPGYPDVL Trigger: GAGAACATCTGGATACCCAGGTCTCCCTGGGCAATGCAGGTATCATCTCACCAGCATGGAAGTCCTCCTCAGTGTGCATGAGGTGGTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR CCA 90 bp | GACTTCCATGCTGGTGAGATGATACCTGCATTGCCCAGGGAGACCTaGGTATCCAGATGTTCTCTCTTCCTTGCGAAGCCAATGCCACTG | + |
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Preference number: 1 (lower is better) Translates to: DFHAGEMIPALPRET*VSRCSLFLAKPMPL Trigger: CAGTGGCATTGGCTTCGCAAGGAAGAGAGAACATCTGGATACCCAGGTCTCCCTGGGCAATGCAGGTATCATCTCACCAGCATGGAAGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR GCA 90 bp | AAGGTCACCCTTCCCCCTCTTCTTTGGACAGAGCTAGACAATCCTTaGAGGCTGCACACAGACACAGTGTTCTACCAGAGAAAAGCCAGC | + |
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Preference number: 1 (lower is better) Translates to: KVTLPPLLWTELDNP*RLHTDTVFYQRKAS Trigger: GCTGGCTTTTCTCTGGTAGAACACTGTGTCTGTGTGCAGCCTGCAAGGATTGTCTAGCTCTGTCCAAAGAAGAGGGGGAAGGGTGACCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR CCA 90 bp | TGGTTACTGTGTATCCTCTTTCCATTTGTTTCCTGTAGCTGGGACTaGCGAGGGGAAAGGTCACCCTTCCCCCTCTTCTTTGGACAGAGC | + |
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Preference number: 1 (lower is better) Translates to: WLLCILFPFVSCSWD*RGERSPFPLFFGQS Trigger: GCTCTGTCCAAAGAAGAGGGGGAAGGGTGACCTTTCCCCTCGCCAGTCCCAGCTACAGGAAACAAATGGAAAGAGGATACACAGTAACCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR TCA 90 bp | GGGAGTCAGGAGCCAGAGGTAAGGCAACTCAGCATCATTTCCACTTaGGAAAGGCCAACGTTAAAGCTGGAGAGGTCAAACACATGGCTG | + |
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Preference number: 1 (lower is better) Translates to: GSQEPEVRQLSIIST*ERPTLKLERSNTWL Trigger: CAGCCATGTGTTTGACCTCTCCAGCTTTAACGTTGGCCTTTCTCAAGTGGAAATGATGCTGAGTTGCCTTACCTCTGGCTCCTGACTCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR CCA 90 bp | TCTCTTCCCTACAACATTCGGAGGAATCATAGCTCCTTTGGCTGGTaGCCATACTTGACCAAGCTTGCATCCTCATTAGTGTCTCAGGCT | + |
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Preference number: 1 (lower is better) Translates to: SLPYNIRRNHSSFGW*PYLTKLASSLVSQA Trigger: AGCCTGAGACACTAATGAGGATGCAAGCTTGGTCAAGTATGGCCACCAGCCAAAGGAGCTATGATTCCTCCGAATGTTGTAGGGAAGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR CCA 90 bp | GCTTCTCTTCCCTACAACATTCGGAGGAATCATAGCTCCTTTGGCTaGTGGCCATACTTGACCAAGCTTGCATCCTCATTAGTGTCTCAG | + |
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Preference number: 1 (lower is better) Translates to: ASLPYNIRRNHSSFG*WPYLTKLASSLVSQ Trigger: CTGAGACACTAATGAGGATGCAAGCTTGGTCAAGTATGGCCACCAGCCAAAGGAGCTATGATTCCTCCGAATGTTGTAGGGAAGAGAAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR TCA 90 bp | AGCTCTGGCATTTGCTGGTCTTCCCAAATGTCAATGACTGACACTTaGTGCCATCATCTCCAGGCAGCTTCTAGATGTCCCACTTCTATA | + |
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Preference number: 1 (lower is better) Translates to: SSGICWSSQMSMTDT*CHHLQAASRCPTSI Trigger: TATAGAAGTGGGACATCTAGAAGCTGCCTGGAGATGATGGCATCAAGTGTCAGTCATTGACATTTGGGAAGACCAGCAAATGCCAGAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR TCA 90 bp | AGAAGCTTTTTAGCTCTGGCATTTGCTGGTCTTCCCAAATGTCAATaGCTGACACTTGATGCCATCATCTCCAGGCAGCTTCTAGATGTC | + |
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Preference number: 1 (lower is better) Translates to: RSFLALAFAGLPKCQ*LTLDAIISRQLLDV Trigger: GACATCTAGAAGCTGCCTGGAGATGATGGCATCAAGTGTCAGTCATTGACATTTGGGAAGACCAGCAAATGCCAGAGCTAAAAAGCTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR CCA 90 bp | TCACATTTCAAACTTATTTGTAATCGTCTTGAGCTGCATGGGAGATaGATGAAGAAGCTTTTTAGCTCTGGCATTTGCTGGTCTTCCCAA | + |
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Preference number: 1 (lower is better) Translates to: SHFKLICNRLELHGR*MKKLFSSGICWSSQ Trigger: TTGGGAAGACCAGCAAATGCCAGAGCTAAAAAGCTTCTTCATCCATCTCCCATGCAGCTCAAGACGATTACAAATAAGTTTGAAATGTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR TCA 90 bp | ATTTCAAACTTATTTGTAATCGTCTTGAGCTGCATGGGAGATGGATaGAGAAGCTTTTTAGCTCTGGCATTTGCTGGTCTTCCCAAATGT | + |
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Preference number: 1 (lower is better) Translates to: ISNLFVIVLSCMGDG*RSFLALAFAGLPKC Trigger: ACATTTGGGAAGACCAGCAAATGCCAGAGCTAAAAAGCTTCTTCATCCATCTCCCATGCAGCTCAAGACGATTACAAATAAGTTTGAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR CCA 90 bp | TTTTTAAAATTGTTTATCAAGAAATCAGTGCTTCAGCCAGTGGCCTaGTTACTGTGTATCCTCTTTCCATTTGTTTCCTGTAGCTGGGAC | + |
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Preference number: 1 (lower is better) Translates to: FLKLFIKKSVLQPVA*LLCILFPFVSCSWD Trigger: GTCCCAGCTACAGGAAACAAATGGAAAGAGGATACACAGTAACCAGGCCACTGGCTGAAGCACTGATTTCTTGATAAACAATTTTAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR-3UTR GCA 90 bp | AATGCCACTGGGTGGCCACTGAGTCCCTGGAAGAGTGCTCTGGGCCTTGACTCCGTAAGAGTCTTGGGGTaGCCTTGGGGGCTTCCTGGT | + |
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Preference number: 2 (lower is better) Translates to: NATGWPLSPWKSALGLDSVRVLG*PWGLPG Trigger: ACCAGGAAGCCCCCAAGGGCACCCCAAGACTCTTAC...GGAGTCAAGGCCCAGAGCACTCTTCCAGGGACTCAGTGGCCACCCAGTGGCATT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR CAA 90 bp | CTGCATTGCCCAGGGAGACCTGGGTATCCAGATGTTCTCTCTTCCTaGCGAAGCCAATGCCACTGGGTGGCCACTGAGTCCCTGGAAGAG | + |
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Preference number: 2 (lower is better) Translates to: LHCPGRPGYPDVLSS*RSQCHWVATESLEE Trigger: CTCTTCCAGGGACTCAGTGGCCACCCAGTGGCATTGGCTTCGCAAGGAAGAGAGAACATCTGGATACCCAGGTCTCCCTGGGCAATGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR CAA 90 bp | TGTATCGGTTTCCTGGCAGGCACCCAGTGTTCTGCAGTAAGAGTCTaGGGGTGCCCTTGGGGGCTTCCTGGTGCTGATAATGGTGGCACA | + |
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Preference number: 2 (lower is better) Translates to: CIGFLAGTQCSAVRV*GCPWGLPGADNGGT Trigger: TGTGCCACCATTATCAGCACCAGGAAGCCCCCAAGGGCACCCCAAGACTCTTACTGCAGAACACTGGGTGCCTGCCAGGAAACCGATACA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR-3UTR GCA 90 bp | GACTTCCATGCTGGTGAGATGATACCTGCATTGCCCAGGGAGACCTGGGTATCCTCCTTGCGAAGCCAATaGCACTGGGTGGCCACTGAG | + |
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Preference number: 2 (lower is better) Translates to: DFHAGEMIPALPRETWVSSLRSQ*HWVATE Trigger: CTCAGTGGCCACCCAGTGGCATTGGCTTCGCAAGGA...GGATACCCAGGTCTCCCTGGGCAATGCAGGTATCATCTCACCAGCATGGAAGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR CAA 90 bp | ATGCACACTGAGGAGGACTTCCATGCTGGTGAGATGATACCTGCATaGCCCAGGGAGACCTGGGTATCCAGATGTTCTCTCTTCCTTGCG | + |
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Preference number: 2 (lower is better) Translates to: MHTEEDFHAGEMIPA*PRETWVSRCSLFLA Trigger: CGCAAGGAAGAGAGAACATCTGGATACCCAGGTCTCCCTGGGCAATGCAGGTATCATCTCACCAGCATGGAAGTCCTCCTCAGTGTGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR-3UTR CCA 90 bp | TGGCTAGCATCTGATGCTTCTGTCCCTGCCCACAATGCTGGGAGTCAGGAGCCACTTCAGCCAGTGGCCTaGTTACTGTGTATCCTCTTT | + |
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Preference number: 2 (lower is better) Translates to: WLASDASVPAHNAGSQEPLQPVA*LLCILF Trigger: AAAGAGGATACACAGTAACCAGGCCACTGGCTGAAG...TGGCTCCTGACTCCCAGCATTGTGGGCAGGGACAGAAGCATCAGATGCTAGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR-3UTR TCA 90 bp | AGAGCTAGACAATCCTTGCAGGCTGCACACAGACACAGTGTTCTACCAGAGAAAGAGTGCTCTGGGCCTTaGCTCCTCCCATCTGTATCG | + |
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Preference number: 2 (lower is better) Translates to: RARQSLQAAHRHSVLPEKECSGP*LLPSVS Trigger: CGATACAGATGGGAGGAGTCAAGGCCCAGAGCACTC...TTTCTCTGGTAGAACACTGTGTCTGTGTGCAGCCTGCAAGGATTGTCTAGCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR-3UTR GCA 90 bp | AGAGCTAGACAATCCTTGCAGGCTGCACACAGACACAGTGTTCTACCAGAGAAAGTAAGAGTCTTGGGGTaGCCTTGGGGGCTTCCTGGT | + |
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Preference number: 2 (lower is better) Translates to: RARQSLQAAHRHSVLPEKVRVLG*PWGLPG Trigger: ACCAGGAAGCCCCCAAGGGCACCCCAAGACTCTTAC...TTTCTCTGGTAGAACACTGTGTCTGTGTGCAGCCTGCAAGGATTGTCTAGCTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR-3UTR CCA 90 bp | GAGCCGGGAGCCAAACCCAGGTCTGGGGATCTTCAGTCTCTTCTAACACAGAGGGAGAAAAGCCAGCAATaGGTGGCATTTACATTTCCC | + |
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Preference number: 2 (lower is better) Translates to: EPGAKPRSGDLQSLLTQREKSQQ*VAFTFP Trigger: GGGAAATGTAAATGCCACCCATTGCTGGCTTTTCTC...CCTCTGTGTTAGAAGAGACTGAAGATCCCCAGACCTGGGTTTGGCTCCCGGCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR-3UTR CCA 90 bp | CTTCAGTCTCTTCTAACACAGAGGCATTTGCACTGGGACTCTGGCATGACCGAGTTTGTTTCCTGTAGCTaGGACTGGCGAGGGGAAAGG | + |
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Preference number: 2 (lower is better) Translates to: LQSLLTQRHLHWDSGMTEFVSCS*DWRGER Trigger: CCTTTCCCCTCGCCAGTCCCAGCTACAGGAAACAAA...CTCGGTCATGCCAGAGTCCCAGTGCAAATGCCTCTGTGTTAGAAGAGACTGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR CAA 90 bp | AAAGGTCACCCTTCCCCCTCTTCTTTGGACAGAGCTAGACAATCCTaGCAGGCTGCACACAGACACAGTGTTCTACCAGAGAAAAGCCAG | + |
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Preference number: 2 (lower is better) Translates to: KGHPSPSSLDRARQS*QAAHRHSVLPEKSQ Trigger: CTGGCTTTTCTCTGGTAGAACACTGTGTCTGTGTGCAGCCTGCAAGGATTGTCTAGCTCTGTCCAAAGAAGAGGGGGAAGGGTGACCTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR CAA 90 bp | TGGGAGTCAGGAGCCAGAGGTAAGGCAACTCAGCATCATTTCCACTaGAGAAAGGCCAACGTTAAAGCTGGAGAGGTCAAACACATGGCT | + |
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Preference number: 2 (lower is better) Translates to: WESGARGKATQHHFH*RKANVKAGEVKHMA Trigger: AGCCATGTGTTTGACCTCTCCAGCTTTAACGTTGGCCTTTCTCAAGTGGAAATGATGCTGAGTTGCCTTACCTCTGGCTCCTGACTCCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR-3UTR TCA 90 bp | CTTCAGTCTCTTCTAACACAGAGGCATTTGCACTGGGACTCTGGCATGACCGAGTGCATGGGAGATGGATaGAGAAGCTTTTTAGCTCTG | + |
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Preference number: 2 (lower is better) Translates to: LQSLLTQRHLHWDSGMTECMGDG*RSFLAL Trigger: CAGAGCTAAAAAGCTTCTTCATCCATCTCCCATGCA...CTCGGTCATGCCAGAGTCCCAGTGCAAATGCCTCTGTGTTAGAAGAGACTGAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR-3UTR CCA 90 bp | AGCTCCTTTGGCTGGTGGCCATACTTGACCAAGCTTGCATCCTCATTAGTGTCTCTTCCCCCTCTTCTTTaGACAGAGCTAGACAATCCT | + |
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Preference number: 2 (lower is better) Translates to: SSFGWWPYLTKLASSLVSLPPLL*TELDNP Trigger: AGGATTGTCTAGCTCTGTCCAAAGAAGAGGGGGAAG...AGACACTAATGAGGATGCAAGCTTGGTCAAGTATGGCCACCAGCCAAAGGAGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR-3UTR TCA 90 bp | AGAGCTAGACAATCCTTGCAGGCTGCACACAGACACAGTGTTCTACCAGAGAAACTTCCCAAATGTCAATaGCTGACACTTGATGCCATC | + |
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Preference number: 2 (lower is better) Translates to: RARQSLQAAHRHSVLPEKLPKCQ*LTLDAI Trigger: GATGGCATCAAGTGTCAGTCATTGACATTTGGGAAG...TTTCTCTGGTAGAACACTGTGTCTGTGTGCAGCCTGCAAGGATTGTCTAGCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR-3UTR CCA 90 bp | CATTTCCTCCCTGTTATTAAATCTAAATTAGTGACTTCTCAGGGGGCTTTTAGAGTCTTGGGGTGCCCTTaGGGGCTTCCTGGTGCTGAT | + |
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Preference number: 2 (lower is better) Translates to: HFLPVIKSKLVTSQGAFRVLGCP*GLPGAD Trigger: ATCAGCACCAGGAAGCCCCCAAGGGCACCCCAAGAC...TCTAAAAGCCCCCTGAGAAGTCACTAATTTAGATTTAATAACAGGGAGGAAATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR-3UTR CCA 90 bp | TATGGCCAGCCTTTTACTTCACAGATGAGGACACAGACATCCTCCATTCTGGGGAAAGATGAATTCTATTaGCCAACACAGGCAGGCAAG | + |
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Preference number: 2 (lower is better) Translates to: YGQPFTSQMRTQTSSILGKDEFY*PTQAGK Trigger: CTTGCCTGCCTGTGTTGGCCAATAGAATTCATCTTT...CCCCAGAATGGAGGATGTCTGTGTCCTCATCTGTGAAGTAAAAGGCTGGCCATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR-3UTR CCA 90 bp | GGCAATCTTACCTGCAAGGGGTTGGCTAATTCATTCATTTCCTCCCTGTTATTAGAGCTGCATGGGAGATaGATGAAGAAGCTTTTTAGC | + |
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Preference number: 2 (lower is better) Translates to: GNLTCKGLANSFISSLLLELHGR*MKKLFS Trigger: GCTAAAAAGCTTCTTCATCCATCTCCCATGCAGCTC...TAATAACAGGGAGGAAATGAATGAATTAGCCAACCCCTTGCAGGTAAGATTGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR-3UTR GCA 90 bp | CATTTCCTCCCTGTTATTAAATCTAAATTAGTGACTTCTCAGGGGGCTTTTAGAATGTTCTCTCTTCCTTaGGAAGCCAATGCCACTGGG | + |
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Preference number: 2 (lower is better) Translates to: HFLPVIKSKLVTSQGAFRMFSLP*EANATG Trigger: CCCAGTGGCATTGGCTTCGCAAGGAAGAGAGAACAT...TCTAAAAGCCCCCTGAGAAGTCACTAATTTAGATTTAATAACAGGGAGGAAATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR-3UTR CCA 90 bp | CATTTCCTCCCTGTTATTAAATCTAAATTAGTGACTTCTCAGGGGGCTTTTAGAAGCCAAACCCAGGTCTaGGGATCTTCAGTCTCTTCT | + |
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Preference number: 2 (lower is better) Translates to: HFLPVIKSKLVTSQGAFRSQTQV*GSSVSS Trigger: AGAAGAGACTGAAGATCCCCAGACCTGGGTTTGGCT...TCTAAAAGCCCCCTGAGAAGTCACTAATTTAGATTTAATAACAGGGAGGAAATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR-3UTR TCA 90 bp | CATTTCCTCCCTGTTATTAAATCTAAATTAGTGACTTCTCAGGGGGCTTTTAGACCAAATGTCAATGACTaGCACTTGATGCCATCATCT | + |
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Preference number: 2 (lower is better) Translates to: HFLPVIKSKLVTSQGAFRPNVND*HLMPSS Trigger: AGATGATGGCATCAAGTGTCAGTCATTGACATTTGG...TCTAAAAGCCCCCTGAGAAGTCACTAATTTAGATTTAATAACAGGGAGGAAATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR GCA 72 bp | GCAGGCACCCAGTGTTCTGCAGTAAGAGTCTTGGGGTaGCCTTGGGGGCTTCCTGGTGCTGATAATGGTGGC | + |
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Preference number: 3 (lower is better) Translates to: AGTQCSAVRVLG*PWGLPGADNGG Trigger: GCCACCATTATCAGCACCAGGAAGCCCCCAAGGGCACCCCAAGACTCTTACTGCAGAACACTGGGTGCCTGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR GCA 72 bp | CATCTGTATCGGTTTCCTGGCAGGCACCCAGTGTTCTaGAGTAAGAGTCTTGGGGTGCCCTTGGGGGCTTCC | + |
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Preference number: 3 (lower is better) Translates to: HLYRFPGRHPVF*SKSLGVPLGAS Trigger: GGAAGCCCCCAAGGGCACCCCAAGACTCTTACTGCAGAACACTGGGTGCCTGCCAGGAAACCGATACAGATG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR CCA 72 bp | CCAGATGTTCTCTCTTCCTTGCGAAGCCAATGCCACTaGGTGGCCACTGAGTCCCTGGAAGAGTGCTCTGGG | + |
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Preference number: 3 (lower is better) Translates to: PDVLSSLRSQCH*VATESLEECSG Trigger: CCCAGAGCACTCTTCCAGGGACTCAGTGGCCACCCAGTGGCATTGGCTTCGCAAGGAAGAGAGAACATCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR GCA 72 bp | GGGTATCCAGATGTTCTCTCTTCCTTGCGAAGCCAATaGCACTGGGTGGCCACTGAGTCCCTGGAAGAGTGC | + |
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Preference number: 3 (lower is better) Translates to: GYPDVLSSLRSQ*HWVATESLEEC Trigger: GCACTCTTCCAGGGACTCAGTGGCCACCCAGTGGCATTGGCTTCGCAAGGAAGAGAGAACATCTGGATACCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR TCA 72 bp | TCATGCACACTGAGGAGGACTTCCATGCTGGTGAGATaGTACCTGCATTGCCCAGGGAGACCTGGGTATCCA | + |
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Preference number: 3 (lower is better) Translates to: SCTLRRTSMLVR*YLHCPGRPGYP Trigger: TGGATACCCAGGTCTCCCTGGGCAATGCAGGTATCATCTCACCAGCATGGAAGTCCTCCTCAGTGTGCATGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR GCA 72 bp | GATAATGGTGGCACACAGCGGGGGTACTTTCTCTCCTaGAGCCAGAAGCATCTTGCAGGGATGTCAAGTCTG | + |
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Preference number: 3 (lower is better) Translates to: DNGGTQRGYFLS*SQKHLAGMSSL Trigger: CAGACTTGACATCCCTGCAAGATGCTTCTGGCTGCAGGAGAGAAAGTACCCCCGCTGTGTGCCACCATTATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR CCA 72 bp | GCTGGTGAGATGATACCTGCATTGCCCAGGGAGACCTaGGTATCCAGATGTTCTCTCTTCCTTGCGAAGCCA | + |
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Preference number: 3 (lower is better) Translates to: AGEMIPALPRET*VSRCSLFLAKP Trigger: TGGCTTCGCAAGGAAGAGAGAACATCTGGATACCCAGGTCTCCCTGGGCAATGCAGGTATCATCTCACCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| 3UTR-3UTR CAA 90 bp | AGCTCCTTTGGCTGGTGGCCATACTTGACCAAGCTTGCATCCTCATTAGTGTCTAGAGTGCTCTGGGCCTaGACTCCTCCCATCTGTATC | + |
|
Preference number: 3 (lower is better) Translates to: SSFGWWPYLTKLASSLVSRVLWA*TPPICI Trigger: GATACAGATGGGAGGAGTCAAGGCCCAGAGCACTCT...AGACACTAATGAGGATGCAAGCTTGGTCAAGTATGGCCACCAGCCAAAGGAGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| 3UTR-3UTR CAA 90 bp | CTTCAGTCTCTTCTAACACAGAGGCATTTGCACTGGGACTCTGGCATGACCGAGGATGTTCTCTCTTCCTaGCGAAGCCAATGCCACTGG | + |
|
Preference number: 3 (lower is better) Translates to: LQSLLTQRHLHWDSGMTEDVLSS*RSQCHW Trigger: CCAGTGGCATTGGCTTCGCAAGGAAGAGAGAACATC...CTCGGTCATGCCAGAGTCCCAGTGCAAATGCCTCTGTGTTAGAAGAGACTGAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| 3UTR TCA 72 bp | GAGCCAGAGGTAAGGCAACTCAGCATCATTTCCACTTaGGAAAGGCCAACGTTAAAGCTGGAGAGGTCAAAC | + |
|
Preference number: 3 (lower is better) Translates to: EPEVRQLSIIST*ERPTLKLERSN Trigger: GTTTGACCTCTCCAGCTTTAACGTTGGCCTTTCTCAAGTGGAAATGATGCTGAGTTGCCTTACCTCTGGCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| 3UTR CCA 72 bp | CCCTACAACATTCGGAGGAATCATAGCTCCTTTGGCTaGTGGCCATACTTGACCAAGCTTGCATCCTCATTA | + |
|
Preference number: 3 (lower is better) Translates to: PYNIRRNHSSFG*WPYLTKLASSL Trigger: TAATGAGGATGCAAGCTTGGTCAAGTATGGCCACCAGCCAAAGGAGCTATGATTCCTCCGAATGTTGTAGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| 3UTR TCA 72 bp | ATTTGCTGGTCTTCCCAAATGTCAATGACTGACACTTaGTGCCATCATCTCCAGGCAGCTTCTAGATGTCCC | + |
|
Preference number: 3 (lower is better) Translates to: ICWSSQMSMTDT*CHHLQAASRCP Trigger: GGGACATCTAGAAGCTGCCTGGAGATGATGGCATCAAGTGTCAGTCATTGACATTTGGGAAGACCAGCAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| 3UTR CCA 72 bp | AAACTTATTTGTAATCGTCTTGAGCTGCATGGGAGATaGATGAAGAAGCTTTTTAGCTCTGGCATTTGCTGG | + |
|
Preference number: 3 (lower is better) Translates to: KLICNRLELHGR*MKKLFSSGICW Trigger: CCAGCAAATGCCAGAGCTAAAAAGCTTCTTCATCCATCTCCCATGCAGCTCAAGACGATTACAAATAAGTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| 3UTR CCA 72 bp | TTTGCACTGGGACTCTGGCATGACCGAGTTCACTCATaGTTGTTGAGCACAACTCTCTTTTTAAAATTGTTT | + |
|
Preference number: 3 (lower is better) Translates to: FALGLWHDRVHS*LLSTTLFLKLF Trigger: AAACAATTTTAAAAAGAGAGTTGTGCTCAACAACCATGAGTGAACTCGGTCATGCCAGAGTCCCAGTGCAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR GCA 90 bp | CTGGCAGGCACCCAGTGTTCTGCAGTAAGAGTCTTGGGGTGCCCTTGGGGGCTTAGGGCAGGGTCACTTTaGAGGGCTGCATCAGCACTC | + |
|
Preference number: 4 (lower is better) Translates to: LAGTQCSAVRVLGCPWGLRAGSL*RAASAL Trigger: GAGTGCTGATGCAGCCCTGCAAAGTGACCCTGCCCT...AAGCCCCCAAGGGCACCCCAAGACTCTTACTGCAGAACACTGGGTGCCTGCCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR CCA 90 bp | GGTTTCCTGGCAGGCACCCAGTGTTCTGCAGTAAGAGTCTTGGGGTGCCCTTGGGTGTCCCCAGCATCCTaGAGGGCAGGGTCACTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: GFLAGTQCSAVRVLGCPWVSPAS*RAGSLC Trigger: GCAAAGTGACCCTGCCCTCCAGGATGCTGGGGACAC...CCAAGGGCACCCCAAGACTCTTACTGCAGAACACTGGGTGCCTGCCAGGAAACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR TCA 90 bp | GACTTCCATGCTGGTGAGATGATACCTGCATTGCCCAGGGAGACCTGGGTATCCCCAAGGCCACAGCAGTaGTCACAGCGAGGAGCTCGG | + |
|
Preference number: 4 (lower is better) Translates to: DFHAGEMIPALPRETWVSPRPQQ*SQRGAR Trigger: CCGAGCTCCTCGCTGTGATCACTGCTGTGGCCTTGG...GGATACCCAGGTCTCCCTGGGCAATGCAGGTATCATCTCACCAGCATGGAAGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174000.2 |
||
| CDS-3UTR CCA 90 bp | CACACAGCGGGGGTACTTTCTCTCCTGCAGCCAGAAGCATCTTGCAGGGATGTCGTGTCCCCAGCATCCTaGAGGGCAGGGTCACTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: HTAGVLSLLQPEASCRDVVSPAS*RAGSLC Trigger: GCAAAGTGACCCTGCCCTCCAGGATGCTGGGGACAC...GACATCCCTGCAAGATGCTTCTGGCTGCAGGAGAGAAAGTACCCCCGCTGTGTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR GCA 90 bp | TGGGCCTTGACTCCTCCCATCTGTATCGGTTTCCTGGCAGGCACCCAGTGTTCTAGGGCAGGGTCACTTTaGAGGGCTGCATCAGCACTC | + |
|
Preference number: 4 (lower is better) Translates to: WALTPPICIGFLAGTQCSRAGSL*RAASAL Trigger: GAGTGCTGATGCAGCCCTGCAAAGTGACCCTGCCCT...AGAACACTGGGTGCCTGCCAGGAAACCGATACAGATGGGAGGAGTCAAGGCCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR CCA 90 bp | CGGGGGTACTTTCTCTCCTGCAGCCAGAAGCATCTTGCAGGGATGTCAAGTCTGGTGTCCCCAGCATCCTaGAGGGCAGGGTCACTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: RGYFLSCSQKHLAGMSSLVSPAS*RAGSLC Trigger: GCAAAGTGACCCTGCCCTCCAGGATGCTGGGGACAC...CAGACTTGACATCCCTGCAAGATGCTTCTGGCTGCAGGAGAGAAAGTACCCCCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR GCA 90 bp | CTGGCAGGCACCCAGTGTTCTGCAGTAAGAGTCTTGGGGTGCCCTTGGGGGCTTTGCATCAGCACTCTCTaGAAACTCTGTGCCTTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: LAGTQCSAVRVLGCPWGLCISTL*KLCAFG Trigger: GCCAAAGGCACAGAGTTTGCAGAGAGTGCTGATGCA...AAGCCCCCAAGGGCACCCCAAGACTCTTACTGCAGAACACTGGGTGCCTGCCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR CCA 90 bp | AGGCACCCAGTGTTCTGCAGTAAGAGTCTTGGGGTGCCCTTGGGGGCTTCCTGGAGTATTCCTTCTTGCTaGTGTCCCCAGCATCCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: RHPVFCSKSLGVPLGASWSIPSC*CPQHPG Trigger: TCCAGGATGCTGGGGACACCAGCAAGAAGGAATACT...CCAGGAAGCCCCCAAGGGCACCCCAAGACTCTTACTGCAGAACACTGGGTGCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR TCA 90 bp | TGGCACACAGCGGGGGTACTTTCTCTCCTGCAGCCAGAAGCATCTTGCAGGGATACAGGTAGCGAAGCATaGGAAAGAGGAGGCAGACCA | + |
|
Preference number: 4 (lower is better) Translates to: WHTAGVLSLLQPEASCRDTGSEA*ERGGRP Trigger: TGGTCTGCCTCCTCTTTCTCATGCTTCGCTACCTGT...ATCCCTGCAAGATGCTTCTGGCTGCAGGAGAGAAAGTACCCCCGCTGTGTGCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR TCA 90 bp | TGGCTAGCATCTGATGCTTCTGTCCCTGCCCACAATGCTGGGAGTCAGGAGCCAACAGGTAGCGAAGCATaGGAAAGAGGAGGCAGACCA | + |
|
Preference number: 4 (lower is better) Translates to: WLASDASVPAHNAGSQEPTGSEA*ERGGRP Trigger: TGGTCTGCCTCCTCTTTCTCATGCTTCGCTACCTGT...TGGCTCCTGACTCCCAGCATTGTGGGCAGGGACAGAAGCATCAGATGCTAGCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR GCA 90 bp | TGGTGGCACACAGCGGGGGTACTTTCTCTCCTGCAGCCAGAAGCATCTTGCAGGTGCATCAGCACTCTCTaGAAACTCTGTGCCTTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: WWHTAGVLSLLQPEASCRCISTL*KLCAFG Trigger: GCCAAAGGCACAGAGTTTGCAGAGAGTGCTGATGCA...CCTGCAAGATGCTTCTGGCTGCAGGAGAGAAAGTACCCCCGCTGTGTGCCACCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR CCA 90 bp | TTTCCTGGCAGGCACCCAGTGTTCTGCAGTAAGAGTCTTGGGGTGCCCTTGGGGAGTATTCCTTCTTGCTaGTGTCCCCAGCATCCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: FPGRHPVFCSKSLGVPLGSIPSC*CPQHPG Trigger: TCCAGGATGCTGGGGACACCAGCAAGAAGGAATACT...CCCCAAGGGCACCCCAAGACTCTTACTGCAGAACACTGGGTGCCTGCCAGGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR TCA 90 bp | GACTTCCATGCTGGTGAGATGATACCTGCATTGCCCAGGGAGACCTGGGTATCCACAGGTAGCGAAGCATaGGAAAGAGGAGGCAGACCA | + |
|
Preference number: 4 (lower is better) Translates to: DFHAGEMIPALPRETWVSTGSEA*ERGGRP Trigger: TGGTCTGCCTCCTCTTTCTCATGCTTCGCTACCTGT...GGATACCCAGGTCTCCCTGGGCAATGCAGGTATCATCTCACCAGCATGGAAGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR GCA 90 bp | GCCCTTGGGGGCTTCCTGGTGCTGATAATGGTGGCACACAGCGGGGGTACTTTCAGCAGTGATCACAGCTaGAATGATGGCAATCTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: ALGGFLVLIMVAHSGGTFSSDHS*NDGNLH Trigger: ATGGAGATTGCCATCATTGCAGCTGTGATCACTGCT...GAAAGTACCCCCGCTGTGTGCCACCATTATCAGCACCAGGAAGCCCCCAAGGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000172434.3 ENSMUST00000174459.2 |
||
| CDS-3UTR GCA 90 bp | TGGCACACAGCGGGGGTACTTTCTCTCCTGCAGCCAGAAGCATCTTGCAGGGATGTCACTTTGCAGGGCTaGATCAGCACTCTCTGCAAA | + |
|
Preference number: 4 (lower is better) Translates to: WHTAGVLSLLQPEASCRDVTLQG*ISTLCK Trigger: TTTGCAGAGAGTGCTGATGCAGCCCTGCAAAGTGAC...ATCCCTGCAAGATGCTTCTGGCTGCAGGAGAGAAAGTACCCCCGCTGTGTGCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR CCA 90 bp | TCCCAGGTCCAGACCACCTCATGCACACTGAGGAGGACTTCCATGCTGGTGAGATGCCTTTGGCCTCATTaGTGTGGTAGGTACCCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: SQVQTTSCTLRRTSMLVRCLWPH*CGRYPC Trigger: ACAAGGGTACCTACCACACCAATGAGGCCAAAGGCA...TCTCACCAGCATGGAAGTCCTCCTCAGTGTGCATGAGGTGGTCTGGACCTGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR CCA 90 bp | TGGGCCTTGACTCCTCCCATCTGTATCGGTTTCCTGGCAGGCACCCAGTGTTCTCAAACTCTGTGCCTTTaGCCTCATTGGTGTGGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: WALTPPICIGFLAGTQCSQTLCL*PHWCGR Trigger: CCTACCACACCAATGAGGCCAAAGGCACAGAGTTTG...AGAACACTGGGTGCCTGCCAGGAAACCGATACAGATGGGAGGAGTCAAGGCCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR CCA 90 bp | TGGCACACAGCGGGGGTACTTTCTCTCCTGCAGCCAGAAGCATCTTGCAGGGATCAAACTCTGTGCCTTTaGCCTCATTGGTGTGGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: WHTAGVLSLLQPEASCRDQTLCL*PHWCGR Trigger: CCTACCACACCAATGAGGCCAAAGGCACAGAGTTTG...ATCCCTGCAAGATGCTTCTGGCTGCAGGAGAGAAAGTACCCCCGCTGTGTGCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR CCA 90 bp | CACACAGCGGGGGTACTTTCTCTCCTGCAGCCAGAAGCATCTTGCAGGGATGTCAGTATTCCTTCTTGCTaGTGTCCCCAGCATCCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: HTAGVLSLLQPEASCRDVSIPSC*CPQHPG Trigger: TCCAGGATGCTGGGGACACCAGCAAGAAGGAATACT...GACATCCCTGCAAGATGCTTCTGGCTGCAGGAGAGAAAGTACCCCCGCTGTGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| 3UTR CAA 72 bp | GAGGAGGACTTCCATGCTGGTGAGATGATACCTGCATaGCCCAGGGAGACCTGGGTATCCAGATGTTCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: EEDFHAGEMIPA*PRETWVSRCSL Trigger: GAGAGAACATCTGGATACCCAGGTCTCCCTGGGCAATGCAGGTATCATCTCACCAGCATGGAAGTCCTCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR GCA 90 bp | CACACAGCGGGGGTACTTTCTCTCCTGCAGCCAGAAGCATCTTGCAGGGATGTCTCTCTGCAAACTCTGTaGCTTTGGCCTCATTGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: HTAGVLSLLQPEASCRDVSLQTL*LWPHWC Trigger: ACACCAATGAGGCCAAAGGCACAGAGTTTGCAGAGA...GACATCCCTGCAAGATGCTTCTGGCTGCAGGAGAGAAAGTACCCCCGCTGTGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR GCA 90 bp | ATGGTGGCACACAGCGGGGGTACTTTCTCTCCTGCAGCCAGAAGCATCTTGCAGTCTCTGCAAACTCTGTaGCTTTGGCCTCATTGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: MVAHSGGTFSPAARSILQSLQTL*LWPHWC Trigger: ACACCAATGAGGCCAAAGGCACAGAGTTTGCAGAGA...CTGCAAGATGCTTCTGGCTGCAGGAGAGAAAGTACCCCCGCTGTGTGCCACCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR GCA 90 bp | CGGGGGTACTTTCTCTCCTGCAGCCAGAAGCATCTTGCAGGGATGTCAAGTCTGGTCACTTTGCAGGGCTaGATCAGCACTCTCTGCAAA | + |
|
Preference number: 4 (lower is better) Translates to: RGYFLSCSQKHLAGMSSLVTLQG*ISTLCK Trigger: TTTGCAGAGAGTGCTGATGCAGCCCTGCAAAGTGAC...CAGACTTGACATCCCTGCAAGATGCTTCTGGCTGCAGGAGAGAAAGTACCCCCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR GCA 90 bp | AGCTCCTTTGGCTGGTGGCCATACTTGACCAAGCTTGCATCCTCATTAGTGTCTAGGGCAGGGTCACTTTaGAGGGCTGCATCAGCACTC | + |
|
Preference number: 4 (lower is better) Translates to: SSFGWWPYLTKLASSLVSRAGSL*RAASAL Trigger: GAGTGCTGATGCAGCCCTGCAAAGTGACCCTGCCCT...AGACACTAATGAGGATGCAAGCTTGGTCAAGTATGGCCACCAGCCAAAGGAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| 3UTR CAA 72 bp | AGCCAGTGGCCTGGTTACTGTGTATCCTCTTTCCATTaGTTTCCTGTAGCTGGGACTGGCGAGGGGAAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: SQWPGYCVSSFH*FPVAGTGEGKG Trigger: ACCTTTCCCCTCGCCAGTCCCAGCTACAGGAAACAAATGGAAAGAGGATACACAGTAACCAGGCCACTGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR GCA 90 bp | AGGGAGACCTGGGTATCCAGATGTTCTCTCTTCCTTGCGAAGCCAATGCCACTGGTCACTTTGCAGGGCTaGATCAGCACTCTCTGCAAA | + |
|
Preference number: 4 (lower is better) Translates to: RETWVSRCSLFLAKPMPLVTLQG*ISTLCK Trigger: TTTGCAGAGAGTGCTGATGCAGCCCTGCAAAGTGAC...CAGTGGCATTGGCTTCGCAAGGAAGAGAGAACATCTGGATACCCAGGTCTCCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR CCA 90 bp | CCCATCTGTATCGGTTTCCTGGCAGGCACCCAGTGTTCTGCAGTAAGAGTCTTGTGCCTTTGGCCTCATTaGTGTGGTAGGTACCCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: PICIGFLAGTQCSAVRVLCLWPH*CGRYPC Trigger: ACAAGGGTACCTACCACACCAATGAGGCCAAAGGCA...CAAGACTCTTACTGCAGAACACTGGGTGCCTGCCAGGAAACCGATACAGATGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR CCA 90 bp | ATCTGTATCGGTTTCCTGGCAGGCACCCAGTGTTCTGCAGTAAGAGTCTTGGGGTGCCTTTGGCCTCATTaGTGTGGTAGGTACCCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: ICIGFLAGTQCSAVRVLGCLWPH*CGRYPC Trigger: ACAAGGGTACCTACCACACCAATGAGGCCAAAGGCA...CCCCAAGACTCTTACTGCAGAACACTGGGTGCCTGCCAGGAAACCGATACAGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR GCA 90 bp | ACACAGCGGGGGTACTTTCTCTCCTGCAGCCAGAAGCATCTTGCAGGGATGTCAAGCAGTGATCACAGCTaGAATGATGGCAATCTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: TQRGYFLSCSQKHLAGMSSSDHS*NDGNLH Trigger: ATGGAGATTGCCATCATTGCAGCTGTGATCACTGCT...TGACATCCCTGCAAGATGCTTCTGGCTGCAGGAGAGAAAGTACCCCCGCTGTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000172434.3 ENSMUST00000174459.2 |
||
| CDS-3UTR GCA 90 bp | TCCTCCCATCTGTATCGGTTTCCTGGCAGGCACCCAGTGTTCTGCAGTAAGAGTTCTCTGCAAACTCTGTaGCTTTGGCCTCATTGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: SSHLYRFPGRHPVFCSKSSLQTL*LWPHWC Trigger: ACACCAATGAGGCCAAAGGCACAGAGTTTGCAGAGA...ACTCTTACTGCAGAACACTGGGTGCCTGCCAGGAAACCGATACAGATGGGAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| 3UTR CAA 72 bp | CGGAGGAATCATAGCTCCTTTGGCTGGTGGCCATACTaGACCAAGCTTGCATCCTCATTAGTGTCTCAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: RRNHSSFGWWPY*TKLASSLVSQA Trigger: AGCCTGAGACACTAATGAGGATGCAAGCTTGGTCAAGTATGGCCACCAGCCAAAGGAGCTATGATTCCTCCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR GCA 90 bp | AGCTCCTTTGGCTGGTGGCCATACTTGACCAAGCTTGCATCCTCATTAGTGTCTTGCATCAGCACTCTCTaGAAACTCTGTGCCTTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: SSFGWWPYLTKLASSLVSCISTL*KLCAFG Trigger: GCCAAAGGCACAGAGTTTGCAGAGAGTGCTGATGCA...AGACACTAATGAGGATGCAAGCTTGGTCAAGTATGGCCACCAGCCAAAGGAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| 3UTR CAA 72 bp | TCTGGGGATCTTCAGTCTCTTCTAACACAGAGGCATTaGCACTGGGACTCTGGCATGACCGAGTTCACTCAT | + |
|
Preference number: 4 (lower is better) Translates to: SGDLQSLLTQRH*HWDSGMTEFTH Trigger: ATGAGTGAACTCGGTCATGCCAGAGTCCCAGTGCAAATGCCTCTGTGTTAGAAGAGACTGAAGATCCCCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| 3UTR CAA 72 bp | GGAGCCAGAGGTAAGGCAACTCAGCATCATTTCCACTaGAGAAAGGCCAACGTTAAAGCTGGAGAGGTCAAA | + |
|
Preference number: 4 (lower is better) Translates to: GARGKATQHHFH*RKANVKAGEVK Trigger: TTTGACCTCTCCAGCTTTAACGTTGGCCTTTCTCAAGTGGAAATGATGCTGAGTTGCCTTACCTCTGGCTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR CAA 90 bp | ATGGTGGCACACAGCGGGGGTACTTTCTCTCCTGCAGCCAGAAGCATCTTGCAGGAGGGCAGGGTCACTTaGCAGGGCTGCATCAGCACT | + |
|
Preference number: 5 (lower is better) Translates to: MVAHSGGTFSPAARSILQEGRVT*QGCIST Trigger: AGTGCTGATGCAGCCCTGCAAAGTGACCCTGCCCTC...CTGCAAGATGCTTCTGGCTGCAGGAGAGAAAGTACCCCCGCTGTGTGCCACCAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR CAA 90 bp | CCCATCTGTATCGGTTTCCTGGCAGGCACCCAGTGTTCTGCAGTAAGAGTCTTGGAGGGCAGGGTCACTTaGCAGGGCTGCATCAGCACT | + |
|
Preference number: 5 (lower is better) Translates to: PICIGFLAGTQCSAVRVLEGRVT*QGCIST Trigger: AGTGCTGATGCAGCCCTGCAAAGTGACCCTGCCCTC...CAAGACTCTTACTGCAGAACACTGGGTGCCTGCCAGGAAACCGATACAGATGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
||
| CDS-3UTR CAA 90 bp | AGGCACCCAGTGTTCTGCAGTAAGAGTCTTGGGGTGCCCTTGGGGGCTTCCTGGATAAAGTATTCCTTCTaGCTGGTGTCCCCAGCATCC | + |
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Preference number: 5 (lower is better) Translates to: RHPVFCSKSLGVPLGASWIKYSF*LVSPAS Trigger: GGATGCTGGGGACACCAGCAAGAAGGAATACTTTAT...CCAGGAAGCCCCCAAGGGCACCCCAAGACTCTTACTGCAGAACACTGGGTGCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| CDS-3UTR CAA 90 bp | TTCCTGGCAGGCACCCAGTGTTCTGCAGTAAGAGTCTTGGGGTGCCCTTGGGGGATAAAGTATTCCTTCTaGCTGGTGTCCCCAGCATCC | + |
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Preference number: 5 (lower is better) Translates to: FLAGTQCSAVRVLGCPWGIKYSF*LVSPAS Trigger: GGATGCTGGGGACACCAGCAAGAAGGAATACTTTAT...CCCCCAAGGGCACCCCAAGACTCTTACTGCAGAACACTGGGTGCCTGCCAGGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| CDS GCA 90 bp | CAGGGTCACTTTGCAGGGCTGCATCAGCACTCTCTGCAAACTCTGTaGCTTTGGCCTCATTGGTGTGGTAGGTACCCTTGTGCCTGTACA | + |
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Preference number: 5 (lower is better) Translates to: QGHFAGLHQHSLQTL*LWPHWCGRYPCACT Trigger: TGTACAGGCACAAGGGTACCTACCACACCAATGAGGCCAAAGGCACAGAGTTTGCAGAGAGTGCTGATGCAGCCCTGCAAAGTGACCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| CDS-3UTR CAA 90 bp | AGAGCTAGACAATCCTTGCAGGCTGCACACAGACACAGTGTTCTACCAGAGAAAGAGGGCAGGGTCACTTaGCAGGGCTGCATCAGCACT | + |
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Preference number: 5 (lower is better) Translates to: RARQSLQAAHRHSVLPEKEGRVT*QGCIST Trigger: AGTGCTGATGCAGCCCTGCAAAGTGACCCTGCCCTC...TTTCTCTGGTAGAACACTGTGTCTGTGTGCAGCCTGCAAGGATTGTCTAGCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174000.2 ENSMUST00000174459.2 |
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| CDS GCA 72 bp | GCAGACCAGGACCAAGGCCACAGCAGTGATCACAGCTaGAATGATGGCAATCTCCATAATGCCGTAGGACTT | + |
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Preference number: 6 (lower is better) Translates to: ADQDQGHSSDHS*NDGNLHNAVGL Trigger: AAGTCCTACGGCATTATGGAGATTGCCATCATTGCAGCTGTGATCACTGCTGTGGCCTTGGTCCTGGTCTGC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174459.2 |
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| CDS GCA 72 bp | TTTGCAGGGCTGCATCAGCACTCTCTGCAAACTCTGTaGCTTTGGCCTCATTGGTGTGGTAGGTACCCTTGT | + |
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Preference number: 6 (lower is better) Translates to: FAGLHQHSLQTL*LWPHWCGRYPC Trigger: ACAAGGGTACCTACCACACCAATGAGGCCAAAGGCACAGAGTTTGCAGAGAGTGCTGATGCAGCCCTGCAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000172434.3 ENSMUST00000174000.2 ENSMUST00000174459.2 |
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