Pregenerated sensors for GYPA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051839Ensembl transcript IDs: ENSMUST00000063359.8
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGTGTTGGCAAAGCATCCTTCCCAGTAAGAGAGCTGTGTGCTGCCTaGCTGGCAAGGAAGAACACGGGAAGACTTACTGGTCTTTTAATT | + |
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Preference number: 1 (lower is better) Translates to: SVGKASFPVRELCAA*LARKNTGRLTGLLI Trigger: AATTAAAAGACCAGTAAGTCTTCCCGTGTTCTTCCTTGCCAGGCAGGCAGCACACAGCTCTCTTACTGGGAAGGATGCTTTGCCAACACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR CCA 90 bp | GTGAGTGTCCTTACATACATTTATGTTTGTGGCATTTCTGAGTGTTaGCAAAGCATCCTTCCCAGTAAGAGAGCTGTGTGCTGCCTGCCT | + |
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Preference number: 1 (lower is better) Translates to: VSVLTYIYVCGISEC*QSILPSKRAVCCLP Trigger: AGGCAGGCAGCACACAGCTCTCTTACTGGGAAGGATGCTTTGCCAACACTCAGAAATGCCACAAACATAAATGTATGTAAGGACACTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR GCA 90 bp | TTGTTGAAAACCCAGTTACTAACGCTTTCACCCATGCCTCTCACTTaGAGTTACAGTAGTTACTGTCTGATTTCCACTGCAAGGAAAGGG | + |
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Preference number: 1 (lower is better) Translates to: LLKTQLLTLSPMPLT*SYSSYCLISTARKG Trigger: CCCTTTCCTTGCAGTGGAAATCAGACAGTAACTACTGTAACTGCAAGTGAGAGGCATGGGTGAAAGCGTTAGTAACTGGGTTTTCAACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR TCA 90 bp | CGCTTTCACCCATGCCTCTCACTTGCAGTTACAGTAGTTACTGTCTaGTTTCCACTGCAAGGAAAGGGCCTTAATTATTTTTATATTTTA | + |
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Preference number: 1 (lower is better) Translates to: RFHPCLSLAVTVVTV*FPLQGKGLNYFYIL Trigger: TAAAATATAAAAATAATTAAGGCCCTTTCCTTGCAGTGGAAATCAGACAGTAACTACTGTAACTGCAAGTGAGAGGCATGGGTGAAAGCG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR-3UTR GCA 90 bp | AAAGCCTCTGAGTTCAAAGTTTTATTAAGAAGGGAAGCTTCCACTGGATGGGTTAGTAAGAGAGCTGTGTaGTGCCTGCCTGGCAAGGAA | + |
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Preference number: 2 (lower is better) Translates to: KASEFKVLLRREASTGWVSKRAV*CLPGKE Trigger: TTCCTTGCCAGGCAGGCAGCACACAGCTCTCTTACT...AACCCATCCAGTGGAAGCTTCCCTTCTTAATAAAACTTTGAACTCAGAGGCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR CAA 90 bp | AGTTTTATTAAGAAGGGAAGCTTCCACTGGATGGGTTCCAGTTTGTaGAAAACCCAGTTACTAACGCTTTCACCCATGCCTCTCACTTGC | + |
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Preference number: 2 (lower is better) Translates to: SFIKKGSFHWMGSSL*KTQLLTLSPMPLTC Trigger: GCAAGTGAGAGGCATGGGTGAAAGCGTTAGTAACTGGGTTTTCAACAAACTGGAACCCATCCAGTGGAAGCTTCCCTTCTTAATAAAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR-3UTR CCA 90 bp | GGGGGTACTCTGAGTGGTTCCAGAAACTTCTCTTTTCAACATGACACACTGGTCCACAGACTCCAAAGGTaGCATTTTCTTCTTACAATG | + |
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Preference number: 2 (lower is better) Translates to: GGTLSGSRNFSFQHDTLVHRLQR*HFLLTM Trigger: CATTGTAAGAAGAAAATGCCACCTTTGGAGTCTGTG...GACCAGTGTGTCATGTTGAAAAGAGAAGTTTCTGGAACCACTCAGAGTACCCCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR-3UTR TCA 90 bp | CTTTTTGTATTGACTTACACACTGAATGAGGGCTGTGAGTGTCCTTACATACATGTAAAAGCCCTTCTGTaGTGTCACCAGGAACAAACC | + |
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Preference number: 2 (lower is better) Translates to: LFVLTYTLNEGCECPYIHVKALL*CHQEQT Trigger: GGTTTGTTCCTGGTGACATCACAGAAGGGCTTTTAC...ATGTATGTAAGGACACTCACAGCCCTCATTCAGTGTGTAAGTCAATACAAAAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR-3UTR TCA 90 bp | TTACATACATTTATGTTTGTGGCATTTCTGAGTGTTGGCAAAGCATCCTTCCCACTGGGGTTGAAGCGATaGGGAATCTTGGATTTCATG | + |
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Preference number: 2 (lower is better) Translates to: LHTFMFVAFLSVGKASFPLGLKR*GILDFM Trigger: CATGAAATCCAAGATTCCTCATCGCTTCAACCCCAG...TGGGAAGGATGCTTTGCCAACACTCAGAAATGCCACAAACATAAATGTATGTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR-3UTR TCA 90 bp | AAAGCCTCTGAGTTCAAAGTTTTATTAAGAAGGGAAGCTTCCACTGGATGGGTTTGTTTGTGGCATTTCTaGGTGTTGGCAAAGCATCCT | + |
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Preference number: 2 (lower is better) Translates to: KASEFKVLLRREASTGWVCLWHF*VLAKHP Trigger: AGGATGCTTTGCCAACACTCAGAAATGCCACAAACA...AACCCATCCAGTGGAAGCTTCCCTTCTTAATAAAACTTTGAACTCAGAGGCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR-3UTR GCA 90 bp | GGGGGTACTCTGAGTGGTTCCAGAAACTTCTCTTTTCAACATGACACACTGGTCCTGAAGGAGTCAATGTaGCATTGTCAAATTATTTTG | + |
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Preference number: 2 (lower is better) Translates to: GGTLSGSRNFSFQHDTLVLKESM*HCQIIL Trigger: CAAAATAATTTGACAATGGCACATTGACTCCTTCAG...GACCAGTGTGTCATGTTGAAAAGAGAAGTTTCTGGAACCACTCAGAGTACCCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR-3UTR TCA 90 bp | AAAGCCTCTGAGTTCAAAGTTTTATTAAGAAGGGAAGCTTCCACTGGATGGGTTCTTCTCTTTTCAACATaGCACACTGGTCCATACTCT | + |
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Preference number: 2 (lower is better) Translates to: KASEFKVLLRREASTGWVLLFST*HTGPYS Trigger: AGAGTATGGACCAGTGTGTCATGTTGAAAAGAGAAG...AACCCATCCAGTGGAAGCTTCCCTTCTTAATAAAACTTTGAACTCAGAGGCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR-3UTR TCA 90 bp | TATAGCCACAAAGCCTCTGAGTTCAAAGTTTTATTAAGAAGGGAAGCTTCCACTACAGTAGTTACTGTCTaGTTTCCACTGCAAGGAAAG | + |
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Preference number: 2 (lower is better) Translates to: YSHKASEFKVLLRREASTTVVTV*FPLQGK Trigger: CTTTCCTTGCAGTGGAAATCAGACAGTAACTACTGT...AGTGGAAGCTTCCCTTCTTAATAAAACTTTGAACTCAGAGGCTTTGTGGCTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR-3UTR CCA 90 bp | AGCAGTTACAAAAATTTCTGCGAGCAAAATCAAGCATACAAGGAAGCTCTTGTTATTTTCTTCTTACAATaGTGTAGCTCAGGAAGGTAC | + |
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Preference number: 2 (lower is better) Translates to: SSYKNFCEQNQAYKEALVIFFLQ*CSSGRY Trigger: GTACCTTCCTGAGCTACACCATTGTAAGAAGAAAAT...AACAAGAGCTTCCTTGTATGCTTGATTTTGCTCGCAGAAATTTTTGTAACTGCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR GCA 72 bp | AAAGCATCCTTCCCAGTAAGAGAGCTGTGTGCTGCCTaGCTGGCAAGGAAGAACACGGGAAGACTTACTGGT | + |
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Preference number: 3 (lower is better) Translates to: KASFPVRELCAA*LARKNTGRLTG Trigger: ACCAGTAAGTCTTCCCGTGTTCTTCCTTGCCAGGCAGGCAGCACACAGCTCTCTTACTGGGAAGGATGCTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR GCA 72 bp | ACCCAGTTACTAACGCTTTCACCCATGCCTCTCACTTaGAGTTACAGTAGTTACTGTCTGATTTCCACTGCA | + |
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Preference number: 3 (lower is better) Translates to: TQLLTLSPMPLT*SYSSYCLISTA Trigger: TGCAGTGGAAATCAGACAGTAACTACTGTAACTGCAAGTGAGAGGCATGGGTGAAAGCGTTAGTAACTGGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR-3UTR CAA 90 bp | GGGGGTACTCTGAGTGGTTCCAGAAACTTCTCTTTTCAACATGACACACTGGTCCAAACCATAACAGAGTaGAATACATCAGCCTTAAAG | + |
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Preference number: 3 (lower is better) Translates to: GGTLSGSRNFSFQHDTLVQTITE*NTSALK Trigger: CTTTAAGGCTGATGTATTCAACTCTGTTATGGTTTG...GACCAGTGTGTCATGTTGAAAAGAGAAGTTTCTGGAACCACTCAGAGTACCCCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR TCA 72 bp | TACTCTGAGTGGTTCCAGAAACTTCTCTTTTCAACATaGCACACTGGTCCATACTCTGAAGGAGTCAATGTG | + |
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Preference number: 3 (lower is better) Translates to: YSEWFQKLLFST*HTGPYSEGVNV Trigger: CACATTGACTCCTTCAGAGTATGGACCAGTGTGTCATGTTGAAAAGAGAAGTTTCTGGAACCACTCAGAGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR TCA 72 bp | CCATGCCTCTCACTTGCAGTTACAGTAGTTACTGTCTaGTTTCCACTGCAAGGAAAGGGCCTTAATTATTTT | + |
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Preference number: 3 (lower is better) Translates to: PCLSLAVTVVTV*FPLQGKGLNYF Trigger: AAAATAATTAAGGCCCTTTCCTTGCAGTGGAAATCAGACAGTAACTACTGTAACTGCAAGTGAGAGGCATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR TCA 72 bp | ATCTTGGATTTCATGGAGACAGTAAAAGCCCTTCTGTaGTGTCACCAGGAACAAACCATAACAGAGTTGAAT | + |
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Preference number: 3 (lower is better) Translates to: ILDFMETVKALL*CHQEQTITELN Trigger: ATTCAACTCTGTTATGGTTTGTTCCTGGTGACATCACAGAAGGGCTTTTACTGTCTCCATGAAATCCAAGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR TCA 72 bp | TTACAATGGTGTAGCTCAGGAAGGTACATAATTTACTaGCACAGCCGATTATTTTTCCCATTGATTGAAGTC | + |
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Preference number: 3 (lower is better) Translates to: LQWCSSGRYIIY*HSRLFFPLIEV Trigger: GACTTCAATCAATGGGAAAAATAATCGGCTGTGTCAGTAAATTATGTACCTTCCTGAGCTACACCATTGTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR TCA 72 bp | AATTTACTTAAATTAAATAAAAATGGGCTCTGGGGTTaGAGCGATGAGGAATCTTGGATTTCATGGAGACAG | + |
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Preference number: 3 (lower is better) Translates to: NLLKLNKNGLWG*SDEESWISWRQ Trigger: CTGTCTCCATGAAATCCAAGATTCCTCATCGCTTCAACCCCAGAGCCCATTTTTATTTAATTTAAGTAAATT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS-3UTR TCA 90 bp | CCACTGGATGGGTTCCAGTTTGTTGAAAACCCAGTTACTAACGCTTTCACCCATTCCTCCAATGTGTGGTaGGACAGGCTGTTCTTCAAA | + |
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Preference number: 4 (lower is better) Translates to: PLDGFQFVENPVTNAFTHSSNVW*DRLFFK Trigger: TTTGAAGAACAGCCTGTCTCACCACACATTGGAGGA...ATGGGTGAAAGCGTTAGTAACTGGGTTTTCAACAAACTGGAACCCATCCAGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| 3UTR CAA 72 bp | AAGAAGGGAAGCTTCCACTGGATGGGTTCCAGTTTGTaGAAAACCCAGTTACTAACGCTTTCACCCATGCCT | + |
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Preference number: 4 (lower is better) Translates to: KKGSFHWMGSSL*KTQLLTLSPMP Trigger: AGGCATGGGTGAAAGCGTTAGTAACTGGGTTTTCAACAAACTGGAACCCATCCAGTGGAAGCTTCCCTTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS-3UTR CCA 90 bp | GTGTGCTGCCTGCCTGGCAAGGAAGAACACGGGAAGACTTACTGGTCTTTTAATAAGCCACCACAGGAGTaGTTATTTGAAGAAGAGAAT | + |
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Preference number: 4 (lower is better) Translates to: VCCLPGKEEHGKTYWSFNKPPQE*LFEEEN Trigger: ATTCTCTTCTTCAAATAACCACTCCTGTGGTGGCTT...ATTAAAAGACCAGTAAGTCTTCCCGTGTTCTTCCTTGCCAGGCAGGCAGCACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS-3UTR CCA 90 bp | TTCCAGTTTGTTGAAAACCCAGTTACTAACGCTTTCACCCATGCCTCTCACTTGCCACCCTCAGGAGATTaGATGTCAACTGAACTTTTC | + |
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Preference number: 4 (lower is better) Translates to: FQFVENPVTNAFTHASHLPPSGD*MSTELF Trigger: GAAAAGTTCAGTTGACATCCAATCTCCTGAGGGTGG...CAAGTGAGAGGCATGGGTGAAAGCGTTAGTAACTGGGTTTTCAACAAACTGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS-3UTR TCA 90 bp | GGATTTCATGGAGACAGTAAAAGCCCTTCTGTGATGTCACCAGGAACAAACCATTCACGCCCAAAATTATaGGTATCATCACTAGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: GFHGDSKSPSVMSPGTNHSRPKL*VSSLVQ Trigger: CTGCACTAGTGATGATACTCATAATTTTGGGCGTGA...ATGGTTTGTTCCTGGTGACATCACAGAAGGGCTTTTACTGTCTCCATGAAATCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS-3UTR TCA 90 bp | TTACATACATTTATGTTTGTGGCATTTCTGAGTGTTGGCAAAGCATCCTTCCCAGTGGTTGTAAGAGAATaGCCTGATGTTGTCACAGCA | + |
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Preference number: 4 (lower is better) Translates to: LHTFMFVAFLSVGKASFPVVVRE*PDVVTA Trigger: TGCTGTGACAACATCAGGTCATTCTCTTACAACCAC...TGGGAAGGATGCTTTGCCAACACTCAGAAATGCCACAAACATAAATGTATGTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS-3UTR TCA 90 bp | AGCAGTTACAAAAATTTCTGCGAGCAAAATCAAGCATACAAGGAAGCTCTTGTTTGTAAGAGAATGACCTaGTGTTGTCACAGCAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: SSYKNFCEQNQAYKEALVCKRMT*CCHSSC Trigger: ACAGCTGCTGTGACAACATCAGGTCATTCTCTTACA...AACAAGAGCTTCCTTGTATGCTTGATTTTGCTCGCAGAAATTTTTGTAACTGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS-3UTR TCA 90 bp | TTACATACATTTATGTTTGTGGCATTTCTGAGTGTTGGCAAAGCATCCTTCCCATTGGTAATGTTGACTTaGAGGTATATGGAAGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: LHTFMFVAFLSVGKASFPLVMLT*RYMEGG Trigger: ACCACCTTCCATATACCTTCAAGTCAACATTACCAA...TGGGAAGGATGCTTTGCCAACACTCAGAAATGCCACAAACATAAATGTATGTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS-3UTR TCA 90 bp | TTACATACATTTATGTTTGTGGCATTTCTGAGTGTTGGCAAAGCATCCTTCCCAAGATTGGATGTCAACTaGACTTTTCTTTGTCATTCG | + |
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Preference number: 4 (lower is better) Translates to: LHTFMFVAFLSVGKASFPRLDVN*TFLCHS Trigger: CGAATGACAAAGAAAAGTTCAGTTGACATCCAATCT...TGGGAAGGATGCTTTGCCAACACTCAGAAATGCCACAAACATAAATGTATGTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS-3UTR CAA 90 bp | GTGTGCTGCCTGCCTGGCAAGGAAGAACACGGGAAGACTTACTGGTCTTTTAATGAAAATCGTGTTGAATaGGTGACGGCATTCCTCCAA | + |
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Preference number: 5 (lower is better) Translates to: VCCLPGKEEHGKTYWSFNENRVE*VTAFLQ Trigger: TTGGAGGAATGCCGTCACCAATTCAACACGATTTTC...ATTAAAAGACCAGTAAGTCTTCCCGTGTTCTTCCTTGCCAGGCAGGCAGCACAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS-3UTR CAA 90 bp | TATGTTTGTGGCATTTCTGAGTGTTGGCAAAGCATCCTTCCCAGTAAGAGAGCTGAGAATGACCTGATGTaGTCACAGCAGCTGTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: YVCGISECWQSILPSKRAENDLM*SQQLCS Trigger: AGAGCACAGCTGCTGTGACAACATCAGGTCATTCTC...AGCTCTCTTACTGGGAAGGATGCTTTGCCAACACTCAGAAATGCCACAAACATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS-3UTR CAA 90 bp | TTACATACATTTATGTTTGTGGCATTTCTGAGTGTTGGCAAAGCATCCTTCCCACTCAAAGGCACACTGTaGTCACCACCCTCAGGAGAT | + |
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Preference number: 5 (lower is better) Translates to: LHTFMFVAFLSVGKASFPLKGTL*SPPSGD Trigger: ATCTCCTGAGGGTGGTGACAACAGTGTGCCTTTGAG...TGGGAAGGATGCTTTGCCAACACTCAGAAATGCCACAAACATAAATGTATGTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS TCA 90 bp | CAAAGGCACACTGTTGTCACCACCCTCAGGAGATTGGATGTCAACTaGACTTTTCTTTGTCATTCGGCTGATACAGTAAGAGATAAGAAG | + |
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Preference number: 5 (lower is better) Translates to: QRHTVVTTLRRLDVN*TFLCHSADTVRDKK Trigger: CTTCTTATCTCTTACTGTATCAGCCGAATGACAAAGAAAAGTTCAGTTGACATCCAATCTCCTGAGGGTGGTGACAACAGTGTGCCTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS CCA 90 bp | CTGAATGCTGATTTGGGTTACCTACAGTTGAAGCCACCACAGGAGTaGTTATTTGAAGAAGAGAATCTGATCCTGACAATGATGGTGAAT | + |
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Preference number: 5 (lower is better) Translates to: LNADLGYLQLKPPQE*LFEEENLILTMMVN Trigger: ATTCACCATCATTGTCAGGATCAGATTCTCTTCTTCAAATAACCACTCCTGTGGTGGCTTCAACTGTAGGTAACCCAAATCAGCATTCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS-3UTR CAA 90 bp | TACAAGGAAGCTCTTGTTCATCATCAGTTATTAATTAACAGAGTTTCCCCATCCCTGGTGTTGACATTGTaGCTGAATGCTGATTTGGGT | + |
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Preference number: 5 (lower is better) Translates to: YKEALVHHQLLINRVSPSLVLTL*LNADLG Trigger: ACCCAAATCAGCATTCAGCAACAATGTCAACACCAG...GGATGGGGAAACTCTGTTAATTAATAACTGATGATGAACAAGAGCTTCCTTGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS-3UTR CAA 90 bp | TTACAAAAATTTCTGCGAGCAAAATCAAGCATACAAGGAAGCTCTTGTTCATCACTTGGTAATGTTGACTaGAAGGTATATGGAAGGTGG | + |
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Preference number: 5 (lower is better) Translates to: LQKFLRAKSSIQGSSCSSLGNVD*KVYGRW Trigger: CCACCTTCCATATACCTTCAAGTCAACATTACCAAG...TGATGAACAAGAGCTTCCTTGTATGCTTGATTTTGCTCGCAGAAATTTTTGTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS CAA 72 bp | TTAGGAGTCTGCTCAATAGAACTCAAAGGCACACTGTaGTCACCACCCTCAGGAGATTGGATGTCAACTGAA | + |
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Preference number: 6 (lower is better) Translates to: LGVCSIELKGTL*SPPSGDWMSTE Trigger: TTCAGTTGACATCCAATCTCCTGAGGGTGGTGACAACAGTGTGCCTTTGAGTTCTATTGAGCAGACTCCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS CAA 90 bp | CTGGTGTTGACATTGTTGCTGAATGCTGATTTGGGTTACCTACAGTaGAAGCCACCACAGGAGTGGTTATTTGAAGAAGAGAATCTGATC | + |
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Preference number: 6 (lower is better) Translates to: LVLTLLLNADLGYLQ*KPPQEWLFEEENLI Trigger: GATCAGATTCTCTTCTTCAAATAACCACTCCTGTGGTGGCTTCAACTGTAGGTAACCCAAATCAGCATTCAGCAACAATGTCAACACCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS TCA 72 bp | ACTGTTGTCACCACCCTCAGGAGATTGGATGTCAACTaGACTTTTCTTTGTCATTCGGCTGATACAGTAAGA | + |
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Preference number: 6 (lower is better) Translates to: TVVTTLRRLDVN*TFLCHSADTVR Trigger: TCTTACTGTATCAGCCGAATGACAAAGAAAAGTTCAGTTGACATCCAATCTCCTGAGGGTGGTGACAACAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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| CDS CAA 72 bp | ACATTGTTGCTGAATGCTGATTTGGGTTACCTACAGTaGAAGCCACCACAGGAGTGGTTATTTGAAGAAGAG | + |
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Preference number: 6 (lower is better) Translates to: TLLLNADLGYLQ*KPPQEWLFEEE Trigger: CTCTTCTTCAAATAACCACTCCTGTGGTGGCTTCAACTGTAGGTAACCCAAATCAGCATTCAGCAACAATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063359.8 |
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