Pregenerated sensors for GYKL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053624Ensembl transcript IDs: ENSMUST00000066193.5
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CTTTCATTAGGTAAAGAGCTCTCCTTGGGGAATCCACAAGGAGGCATGATTTATTTCTGCCGCTCCCGCTaGCATTGCGACTCCCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: LSLGKELSLGNPQGGMIYFCRSR*HCDSQC Trigger: GCACTGGGAGTCGCAATGGCAGCGGGAGCGGCAGAA...ATAAATCATGCCTCCTTGTGGATTCCCCAAGGAGAGCTCTTTACCTAATGAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS-3UTR TCA 90 bp | CTTTCATTAGGTAAAGAGCTCTCCTTGGGGAATCCACAAGGAGGCATGATTTATCGACCATCAGGAGACTaGGTCAAAACCCAACCCATT | + |
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Preference number: 4 (lower is better) Translates to: LSLGKELSLGNPQGGMIYRPSGD*VKTQPI Trigger: AATGGGTTGGGTTTTGACTCAGTCTCCTGATGGTCG...ATAAATCATGCCTCCTTGTGGATTCCCCAAGGAGAGCTCTTTACCTAATGAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS-3UTR GCA 90 bp | ATCCAGAGTCCAAATAGTGGTATTACATTGAAACAACTGCTGGATTCTTTCATTGGTACCTTGGTCCACTaGCCCTACCAACGGCCCCAA | + |
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Preference number: 4 (lower is better) Translates to: IQSPNSGITLKQLLDSFIGTLVH*PYQRPQ Trigger: TTGGGGCCGTTGGTAGGGGCAGTGGACCAAGGTACC...AATGAAAGAATCCAGCAGTTGTTTCAATGTAATACCACTATTTGGACTCTGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS-3UTR CCA 90 bp | CTTGGAGATACATGCAACAAGGGGCACATAAACAAATCCAGAGTCCAAATAGTGAAAAACGTGTTGAGCTaGTACCTTGGTCCACTGCCC | + |
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Preference number: 4 (lower is better) Translates to: LGDTCNKGHINKSRVQIVKNVLS*YLGPLP Trigger: GGGCAGTGGACCAAGGTACCAGCTCAACACGTTTTT...CACTATTTGGACTCTGGATTTGTTTATGTGCCCCTTGTTGCATGTATCTCCAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS-3UTR TCA 90 bp | CATCTCAGGTCTTCTTGGAGATACATGCAACAAGGGGCACATAAACAAATCCAGTTCTCACATTTTCAATaGGCCAGTGAAGTTTCACGG | + |
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Preference number: 4 (lower is better) Translates to: HLRSSWRYMQQGAHKQIQFSHFQ*ASEVSR Trigger: CCGTGAAACTTCACTGGCTCATTGAAAATGTGAGAA...CTGGATTTGTTTATGTGCCCCTTGTTGCATGTATCTCCAAGAAGACCTGAGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS-3UTR TCA 90 bp | TTATTTCACATCTCAGGTCTTCTTGGAGATACATGCAACAAGGGGCACATAAACGCAAAGAGTGAATGTTaGAAAGCATGGTCCTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: LFHISGLLGDTCNKGHINAKSEC*KAWSCW Trigger: CCAGCAGGACCATGCTTTTCAACATTCACTCTTTGC...GTTTATGTGCCCCTTGTTGCATGTATCTCCAAGAAGACCTGAGATGTGAAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS-3UTR GCA 90 bp | TTTCACATCTCAGGTCTTCTTGGAGATACATGCAACAAGGGGCACATAAACAAACATTGCGACTCCCAGTaGAGTTGTTTCTGGCATGAA | + |
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Preference number: 4 (lower is better) Translates to: FHISGLLGDTCNKGHINKHCDSQ*SCFWHE Trigger: TTCATGCCAGAAACAACTGCACTGGGAGTCGCAATG...TTTGTTTATGTGCCCCTTGTTGCATGTATCTCCAAGAAGACCTGAGATGTGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS-3UTR CCA 90 bp | CTCAGGTCTTCTTGGAGATACATGCAACAAGGGGCACATAAACAAATCCAGAGTCAGTGCAGTTGTTTCTaGCATGAAAGGTTTCATCAC | + |
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Preference number: 4 (lower is better) Translates to: LRSSWRYMQQGAHKQIQSQCSCF*HERFHH Trigger: GTGATGAAACCTTTCATGCCAGAAACAACTGCACTG...ACTCTGGATTTGTTTATGTGCCCCTTGTTGCATGTATCTCCAAGAAGACCTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS-3UTR GCA 90 bp | CTTGGAGATACATGCAACAAGGGGCACATAAACAAATCCAGAGTCCAAATAGTGATTGCCTTTGGGTCTTaGTCTACCCATCCTTCTTTT | + |
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Preference number: 4 (lower is better) Translates to: LGDTCNKGHINKSRVQIVIAFGS*STHPSF Trigger: AAAAGAAGGATGGGTAGAGCAAGACCCAAAGGCAAT...CACTATTTGGACTCTGGATTTGTTTATGTGCCCCTTGTTGCATGTATCTCCAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS-3UTR GCA 90 bp | CTCAGGTCTTCTTGGAGATACATGCAACAAGGGGCACATAAACAAATCCAGAGTGAAATATCAATGCTCTaGTGTCCGAGTTTCTCACAT | + |
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Preference number: 4 (lower is better) Translates to: LRSSWRYMQQGAHKQIQSEISML*CPSFSH Trigger: ATGTGAGAAACTCGGACAGCAGAGCATTGATATTTC...ACTCTGGATTTGTTTATGTGCCCCTTGTTGCATGTATCTCCAAGAAGACCTGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS-3UTR TCA 90 bp | TTTCACATCTCAGGTCTTCTTGGAGATACATGCAACAAGGGGCACATAAACAAAGGCCTGTCTTGTTCTTaGCAAAGTTATTGCTTACTG | + |
|
Preference number: 4 (lower is better) Translates to: FHISGLLGDTCNKGHINKGLSCS*QSYCLL Trigger: CAGTAAGCAATAACTTTGTCAAGAACAAGACAGGCC...TTTGTTTATGTGCCCCTTGTTGCATGTATCTCCAAGAAGACCTGAGATGTGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS-3UTR CCA 90 bp | CTTTCATTAGGTAAAGAGCTCTCCTTGGGGAATCCACAAGGAGGCATGATTTATTCAAACTTCTCCATCTaGACACTTGACAAATCCTTA | + |
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Preference number: 4 (lower is better) Translates to: LSLGKELSLGNPQGGMIYSNFSI*TLDKSL Trigger: TAAGGATTTGTCAAGTGTCCAGATGGAGAAGTTTGA...ATAAATCATGCCTCCTTGTGGATTCCCCAAGGAGAGCTCTTTACCTAATGAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS-3UTR TCA 90 bp | ATCCAGAGTCCAAATAGTGGTATTACATTGAAACAACTGCTGGATTCTTTCATTCAGTTGTTTCTGGCATaGAAGGTTTCATCACCGGAA | + |
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Preference number: 4 (lower is better) Translates to: IQSPNSGITLKQLLDSFIQLFLA*KVSSPE Trigger: TTCCGGTGATGAAACCTTTCATGCCAGAAACAACTG...AATGAAAGAATCCAGCAGTTGTTTCAATGTAATACCACTATTTGGACTCTGGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS-3UTR CAA 90 bp | TTTCACATCTCAGGTCTTCTTGGAGATACATGCAACAAGGGGCACATAAACAAAACTGCAGGATTGCCTTaGGGTCTTGCTCTACCCATC | + |
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Preference number: 5 (lower is better) Translates to: FHISGLLGDTCNKGHINKTAGLP*GLALPI Trigger: GATGGGTAGAGCAAGACCCAAAGGCAATCCTGCAGT...TTTGTTTATGTGCCCCTTGTTGCATGTATCTCCAAGAAGACCTGAGATGTGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS-3UTR CAA 90 bp | CTTGGAGATACATGCAACAAGGGGCACATAAACAAATCCAGAGTCCAAATAGTGGTAGTTTCCCGCTGGTaGGTGACACCGATAGCTTTT | + |
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Preference number: 5 (lower is better) Translates to: LGDTCNKGHINKSRVQIVVVSRW*VTPIAF Trigger: AAAAGCTATCGGTGTCACCAACCAGCGGGAAACTAC...CACTATTTGGACTCTGGATTTGTTTATGTGCCCCTTGTTGCATGTATCTCCAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS-3UTR CAA 90 bp | CTTCTTGGAGATACATGCAACAAGGGGCACATAAACAAATCCAGAGTCCAAATAATATGTGCTTTTAGCTaGTCCGTCCTGAAGACACAG | + |
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Preference number: 5 (lower is better) Translates to: LLGDTCNKGHINKSRVQIICAFS*SVLKTQ Trigger: CTGTGTCTTCAGGACGGACAAGCTAAAAGCACATAT...TATTTGGACTCTGGATTTGTTTATGTGCCCCTTGTTGCATGTATCTCCAAGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS-3UTR CAA 90 bp | CTTTCATTAGGTAAAGAGCTCTCCTTGGGGAATCCACAAGGAGGCATGATTTATCTTACTGAAATACTTTaGCTGAGATTCTCCACAGTA | + |
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Preference number: 5 (lower is better) Translates to: LSLGKELSLGNPQGGMIYLTEIL*LRFSTV Trigger: TACTGTGGAGAATCTCAGCAAAAGTATTTCAGTAAG...ATAAATCATGCCTCCTTGTGGATTCCCCAAGGAGAGCTCTTTACCTAATGAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS GCA 72 bp | TCCTTCTGCCGCTCCCGCTGCCATTGCGACTCCCAGTaGAGTTGTTTCTGGCATGAAAGGTTTCATCACCGG | + |
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Preference number: 6 (lower is better) Translates to: SFCRSRCHCDSQ*SCFWHERFHHR Trigger: CCGGTGATGAAACCTTTCATGCCAGAAACAACTGCACTGGGAGTCGCAATGGCAGCGGGAGCGGCAGAAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS CCA 72 bp | TCCTCGACATTGATCTGGGGTTCAAACTTCTCCATCTaGACACTTGACAAATCCTTAGGATCCAGACTCCAC | + |
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Preference number: 6 (lower is better) Translates to: SSTLIWGSNFSI*TLDKSLGSRLH Trigger: GTGGAGTCTGGATCCTAAGGATTTGTCAAGTGTCCAGATGGAGAAGTTTGAACCCCAGATCAATGTCGAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS TCA 72 bp | CGCAGAGCTCTTCATCCCATTGCAAAGAGTGAATGTTaGAAAGCATGGTCCTGCTGGCATTACTTACATCTG | + |
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Preference number: 6 (lower is better) Translates to: RRALHPIAKSEC*KAWSCWHYLHL Trigger: CAGATGTAAGTAATGCCAGCAGGACCATGCTTTTCAACATTCACTCTTTGCAATGGGATGAAGAGCTCTGCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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| CDS TCA 72 bp | ATTGATCTGGGGTTCAAACTTCTCCATCTGGACACTTaGCAAATCCTTAGGATCCAGACTCCACACGCTAAC | + |
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Preference number: 6 (lower is better) Translates to: IDLGFKLLHLDT*QILRIQTPHAN Trigger: GTTAGCGTGTGGAGTCTGGATCCTAAGGATTTGTCAAGTGTCCAGATGGAGAAGTTTGAACCCCAGATCAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066193.5 |
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