RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GUCY2D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074003

Ensembl transcript IDs: ENSMUST00000098274.5, ENSMUST00000205350.2, ENSMUST00000206435.2

Found 266 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCGACAAGGACACAGCTCAGAAGAAAGACCCTCAGTGCTGGATGCTaGATGTGTATGGCATGTCCCTGTGTGGTGTCCCCACCGGTGGCC +
Preference number: 1 (lower is better)
Translates to: ATRTQLRRKTLSAGC*MCMACPCVVSPPVA
Trigger: GGCCACCGGTGGGGACACCACACAGGGACATGCCATACACATCCAGCATCCAGCACTGAGGGTCTTTCTTCTGAGCTGTGTCCTTGTCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
3UTR GCA 90 bp ACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTaGTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATT +
Preference number: 1 (lower is better)
Translates to: TGGKDTPGVTREDTN*SYHSWVADSQGADI
Trigger: AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
3UTR GCA 90 bp TGCACCCCAAATGGTGGCTCAGCCAGGCTGTGGAGCAGTCACAGCTaGCACCCATTCACACAGAGACAGTGCTTAGTTAGCACTAGGCAA +
Preference number: 1 (lower is better)
Translates to: CTPNGGSARLWSSHS*HPFTQRQCLVSTRQ
Trigger: TTGCCTAGTGCTAACTAAGCACTGTCTCTGTGTGAATGGGTGGCAGCTGTGACTGCTCCACAGCCTGGCTGAGCCACCATTTGGGGTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
3UTR GCA 90 bp ATAGCGACAAGGACACAGCTCAGAAGAAAGACCCTCAGTGCTGGATaGTGGATGTGTATGGCATGTCCCTGTGTGGTGTCCCCACCGGTG +
Preference number: 1 (lower is better)
Translates to: IATRTQLRRKTLSAG*WMCMACPCVVSPPV
Trigger: CACCGGTGGGGACACCACACAGGGACATGCCATACACATCCAGCATCCAGCACTGAGGGTCTTTCTTCTGAGCTGTGTCCTTGTCGCTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
3UTR GCA 90 bp GTGGCAGATAGCGACAAGGACACAGCTCAGAAGAAAGACCCTCAGTaGTGGATGCTGGATGTGTATGGCATGTCCCTGTGTGGTGTCCCC +
Preference number: 1 (lower is better)
Translates to: VADSDKDTAQKKDPQ*WMLDVYGMSLCGVP
Trigger: GGGGACACCACACAGGGACATGCCATACACATCCAGCATCCAGCACTGAGGGTCTTTCTTCTGAGCTGTGTCCTTGTCGCTATCTGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
3UTR CCA 90 bp GCAGATAGCGACAAGGACACAGCTCAGAAGAAAGACCCTCAGTGCTaGATGCTGGATGTGTATGGCATGTCCCTGTGTGGTGTCCCCACC +
Preference number: 1 (lower is better)
Translates to: ADSDKDTAQKKDPQC*MLDVYGMSLCGVPT
Trigger: GGTGGGGACACCACACAGGGACATGCCATACACATCCAGCATCCAGCACTGAGGGTCTTTCTTCTGAGCTGTGTCCTTGTCGCTATCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
3UTR-3UTR TCA 90 bp ACTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGTGGTGGGGGCATCTTaGCTGCCTTGGCCCTTGCCC +
Preference number: 2 (lower is better)
Translates to: TREDTNCSYHSWVADSQGVVGAS*LPWPLP
Trigger: GGGCAAGGGCCAAGGCAGTCAAGATGCCCCCACCAC...TCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
3UTR-3UTR TCA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCAGTGGTGGGGGCATCTTaGCTGCCTTGGCCCTTGCCC +
Preference number: 2 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSVVGAS*LPWPLP
Trigger: GGGCAAGGGCCAAGGCAGTCAAGATGCCCCCACCAC...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
3UTR-3UTR CCA 90 bp GCTGGATGTGTATGGCATGTCCCTGTGTGGTGTCCCCACCGGTGGCCTGTTTATCTGTTGCACCCCAAATaGTGGCTCAGCCAGGCTGTG +
Preference number: 2 (lower is better)
Translates to: AGCVWHVPVWCPHRWPVYLLHPK*WLSQAV
Trigger: CACAGCCTGGCTGAGCCACCATTTGGGGTGCAACAG...ATAAACAGGCCACCGGTGGGGACACCACACAGGGACATGCCATACACATCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
3UTR GCA 72 bp AAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTaGTCATACCACTCATGGGTGGCAGACAGCCAGGGA +
Preference number: 3 (lower is better)
Translates to: KDTPGVTREDTN*SYHSWVADSQG
Trigger: TCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
3UTR CCA 72 bp CTAGGGAAGACACCAACTGCTCATACCACTCATGGGTaGCAGACAGCCAGGGAGCTGACATTCCTAGCAGAG +
Preference number: 3 (lower is better)
Translates to: LGKTPTAHTTHG*QTARELTFLAE
Trigger: CTCTGCTAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
3UTR CCA 72 bp GTTACTAGGGAAGACACCAACTGCTCATACCACTCATaGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGC +
Preference number: 3 (lower is better)
Translates to: VTREDTNCSYHS*VADSQGADIPS
Trigger: GCTAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGTAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
3UTR CCA 72 bp GTGCTGGATGCTGGATGTGTATGGCATGTCCCTGTGTaGTGTCCCCACCGGTGGCCTGTTTATACAGCTTTT +
Preference number: 3 (lower is better)
Translates to: VLDAGCVWHVPV*CPHRWPVYTAF
Trigger: AAAAGCTGTATAAACAGGCCACCGGTGGGGACACCACACAGGGACATGCCATACACATCCAGCATCCAGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
3UTR GCA 72 bp AGCGACAAGGACACAGCTCAGAAGAAAGACCCTCAGTaGTGGATGCTGGATGTGTATGGCATGTCCCTGTGT +
Preference number: 3 (lower is better)
Translates to: SDKDTAQKKDPQ*WMLDVYGMSLC
Trigger: ACACAGGGACATGCCATACACATCCAGCATCCAGCACTGAGGGTCTTTCTTCTGAGCTGTGTCCTTGTCGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
3UTR CCA 72 bp GACAAGGACACAGCTCAGAAGAAAGACCCTCAGTGCTaGATGCTGGATGTGTATGGCATGTCCCTGTGTGGT +
Preference number: 3 (lower is better)
Translates to: DKDTAQKKDPQC*MLDVYGMSLCG
Trigger: ACCACACAGGGACATGCCATACACATCCAGCATCCAGCACTGAGGGTCTTTCTTCTGAGCTGTGTCCTTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
3UTR GCA 72 bp AGCAGTCACAGCTGCCACCCATTCACACAGAGACAGTaGTTAGTTAGCACTAGGCAAATTATGTATTTCCCA +
Preference number: 3 (lower is better)
Translates to: SSHSCHPFTQRQ*LVSTRQIMYFP
Trigger: TGGGAAATACATAATTTGCCTAGTGCTAACTAAGCACTGTCTCTGTGTGAATGGGTGGCAGCTGTGACTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
CDS-3UTR CCA 90 bp TGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCCGCTGTCCACATGTaGCCTCCTCCGGCTGGGGGT +
Preference number: 4 (lower is better)
Translates to: WVADSQGADIPSRAGVVGAAVHM*PPPAGG
Trigger: ACCCCCAGCCGGAGGAGGCCACATGTGGACAGCGGC...CCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp TGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGAGTCTCCACGGGCCCTaGCAGGGCAGGCAGGTCTTC +
Preference number: 4 (lower is better)
Translates to: WVADSQGADIPSRAGVVGSLHGP*QGRQVF
Trigger: GAAGACCTGCCTGCCCTGCCAGGGCCCGTGGAGACT...CCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp AGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCATCTTGACTGCCTTGCCGCTGTCCACATGTaGCCTCCTCCGGCTGGGGGT +
Preference number: 4 (lower is better)
Translates to: RELTFLAEQGWWGHLDCLAAVHM*PPPAGG
Trigger: ACCCCCAGCCGGAGGAGGCCACATGTGGACAGCGGC...AAGGCAGTCAAGATGCCCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp TGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGCACTGTGGAGCTGCTTaGAAACCTCTGTGGCCCCCT +
Preference number: 4 (lower is better)
Translates to: WVADSQGADIPSRAGVVGHCGAA*KPLWPP
Trigger: AGGGGGCCACAGAGGTTTGCAAGCAGCTCCACAGTG...CCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp TGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGCCCAGAGGCTGCACCTaGCATGTGCTTGTGTCCAGA +
Preference number: 4 (lower is better)
Translates to: WVADSQGADIPSRAGVVGPRGCT*HVLVSR
Trigger: TCTGGACACAAGCACATGGCAGGTGCAGCCTCTGGG...CCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp AGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCATCTTGACTGCCTTGGTCGAACCAGCAGCTaGCGTCATGGGCTGGAGGGC +
Preference number: 4 (lower is better)
Translates to: RELTFLAEQGWWGHLDCLGRTSS*RHGLEG
Trigger: GCCCTCCAGCCCATGACGCCAGCTGCTGGTTCGACC...AAGGCAGTCAAGATGCCCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGGTCAGGGGACACCAGTaGCCGGCACAGAGGAGGGGG +
Preference number: 4 (lower is better)
Translates to: LGKTPTAHTTHGWQTAREVRGHQ*PAQRRG
Trigger: CCCCCTCCTCTGTGCCGGCCACTGGTGTCCCCTGAC...CTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp TGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGTGGTTTATGCGGTCCTaGCATGGGTCTCCAGGCTTG +
Preference number: 4 (lower is better)
Translates to: WVADSQGADIPSRAGVVGWFMRS*HGSPGL
Trigger: CAAGCCTGGAGACCCATGGCAGGACCGCATAAACCA...CCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGTCAGCAGGATCCGATaGGGGCCCCGCAACAGCCGC +
Preference number: 4 (lower is better)
Translates to: PTAHTTHGWQTARELTFLVSRIR*GPRNSR
Trigger: GCGGCTGTTGCGGGGCCCCCATCGGATCCTGCTGAC...TAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGTCAGGGGACACCAGTaGCCGGCACAGAGGAGGGGG +
Preference number: 4 (lower is better)
Translates to: PTAHTTHGWQTARELTFLVRGHQ*PAQRRG
Trigger: CCCCCTCCTCTGTGCCGGCCACTGGTGTCCCCTGAC...TAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp TGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGTCCTCAGTCCGCTCCTaGACCAGATCTTCCAGGCTT +
Preference number: 4 (lower is better)
Translates to: WVADSQGADIPSRAGVVGSSVRS*TRSSRL
Trigger: AAGCCTGGAAGATCTGGTCCAGGAGCGGACTGAGGA...CCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp AGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCATCTTGACTGCCTTCCAGCACCATTGCACTaGCCCCAGGGCCCACAAAGA +
Preference number: 4 (lower is better)
Translates to: RELTFLAEQGWWGHLDCLPAPLH*PQGPQR
Trigger: TCTTTGTGGGCCCTGGGGTCAGTGCAATGGTGCTGG...AAGGCAGTCAAGATGCCCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp ACTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGACTTGCCCCAGCCTTaGGCCAGCAGGGCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: TREDTNCSYHSWVADSQGDLPQP*ASRAAA
Trigger: AGCAGCAGCCCTGCTGGCCCAAGGCTGGGGCAAGTC...TCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp TGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGCCGCAGAAGGTAAAGTaGGCACTAAGTCACCTCCTC +
Preference number: 4 (lower is better)
Translates to: WVADSQGADIPSRAGVVGPQKVK*ALSHLL
Trigger: GAGGAGGTGACTTAGTGCCCACTTTACCTTCTGCGG...CCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp ACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCGGTCGAACCAGCAGCTaGCGTCATGGGCTGGAGGGC +
Preference number: 4 (lower is better)
Translates to: TPTAHTTHGWQTARELTFGRTSS*RHGLEG
Trigger: GCCCTCCAGCCCATGACGCCAGCTGCTGGTTCGACC...GAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp ACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCATACGTCAGCAGGATCCGATaGGGGCCCCGCAACAGCCGC +
Preference number: 4 (lower is better)
Translates to: TGGKDTPGVTREDTNCSYVSRIR*GPRNSR
Trigger: GCGGCTGTTGCGGGGCCCCCATCGGATCCTGCTGAC...GTATGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCACTCGAGGGGACCCTaGTCAGGGGACACCAGTGGC +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADIHSRGP*SGDTSG
Trigger: GCCACTGGTGTCCCCTGACCAGGGTCCCCTCGAGTG...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp TTCCTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCCACTCGAGGGGACCCTaGTCAGGGGACACCAGTGGC +
Preference number: 4 (lower is better)
Translates to: FLTGGKDTPGVTREDTNCHSRGP*SGDTSG
Trigger: GCCACTGGTGTCCCCTGACCAGGGTCCCCTCGAGTG...GCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp AGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCATCTTGACTGCCTTCCTCCCCTGATTTTCTaGGCTCAGCCAGTCCCTGGC +
Preference number: 4 (lower is better)
Translates to: RELTFLAEQGWWGHLDCLPPLIF*AQPVPG
Trigger: GCCAGGGACTGGCTGAGCCCAGAAAATCAGGGGAGG...AAGGCAGTCAAGATGCCCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp TGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGAGACAGTCTTCAGATaGCTGACAGTGAGTCTCCAC +
Preference number: 4 (lower is better)
Translates to: WVADSQGADIPSRAGVVGETVFR*LTVSLH
Trigger: GTGGAGACTCACTGTCAGTCATCTGAAGACTGTCTC...CCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp TGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGAGCCAAAGTGTCTCATaGCAGACAGTAGCACATCGG +
Preference number: 4 (lower is better)
Translates to: WVADSQGADIPSRAGVVGSQSVS*QTVAHR
Trigger: CCGATGTGCTACTGTCTGTCATGAGACACTTTGGCT...CCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp AGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCATCTTGACTGCCTTGGGGCTGCACACCTCTaGTGCATAGTGTGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: RELTFLAEQGWWGHLDCLGAAHL*CIVCWG
Trigger: ACCCCAACACACTATGCATCAGAGGTGTGCAGCCCC...AAGGCAGTCAAGATGCCCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp TTCCTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTGCAGCAGGGTGGTCTaGTCCAGGCCTCCAAGCAGC +
Preference number: 4 (lower is better)
Translates to: FLTGGKDTPGVTREDTNCCSRVV*SRPPSS
Trigger: GCTGCTTGGAGGCCTGGAGCAGACCACCCTGCTGCA...GCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp ACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCTCAGAGTCAGGAGGCTaGCCAGGGGCTGCACACCTC +
Preference number: 4 (lower is better)
Translates to: TPTAHTTHGWQTARELTFSESGG*PGAAHL
Trigger: GAGGTGTGCAGCCCCTGGGCAGCCTCCTGACTCTGA...GAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCATCAGAGTCAGGAGGCTaGCCAGGGGCTGCACACCTC +
Preference number: 4 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSSESGG*PGAAHL
Trigger: GAGGTGTGCAGCCCCTGGGCAGCCTCCTGACTCTGA...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp CTCAGTGCTGGATGCTGGATGTGTATGGCATGTCCCTGTGTGGTGTCCCCACCGACACAGGGTCCTGAATaGAGACCTGCCCTGACACGG +
Preference number: 4 (lower is better)
Translates to: LSAGCWMCMACPCVVSPPTQGPE*RPALTR
Trigger: CCGTGTCAGGGCAGGTCTGCATTCAGGACCCTGTGT...CGGTGGGGACACCACACAGGGACATGCCATACACATCCAGCATCCAGCACTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
CDS-3UTR CCA 90 bp ACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCATACAGTCTCCACGGGCCCTaGCAGGGCAGGCAGGTCTTC +
Preference number: 4 (lower is better)
Translates to: TGGKDTPGVTREDTNCSYSLHGP*QGRQVF
Trigger: GAAGACCTGCCTGCCCTGCCAGGGCCCGTGGAGACT...GTATGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCAGGGCCTGGGCAAAGATaGGGTCACAGTCCCAGGGAC +
Preference number: 4 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSGPGQR*GHSPRD
Trigger: GTCCCTGGGACTGTGACCCCATCTTTGCCCAGGCCC...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTGGGCCTGGGCAAAGATaGGGTCACAGTCCCAGGGAC +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADIGPGQR*GHSPRD
Trigger: GTCCCTGGGACTGTGACCCCATCTTTGCCCAGGCCC...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp AGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCATCTTGACTGCCTTCCAGCTGCTGGGCTGTaGTTACCCAGATGTCCTGGT +
Preference number: 4 (lower is better)
Translates to: RELTFLAEQGWWGHLDCLPAAGL*LPRCPG
Trigger: ACCAGGACATCTGGGTAACCACAGCCCAGCAGCTGG...AAGGCAGTCAAGATGCCCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCACAGTGCAGCAGGGTaGTCTGCTCCAGGCCTCCAA +
Preference number: 4 (lower is better)
Translates to: LGKTPTAHTTHGWQTAREHSAAG*SAPGLQ
Trigger: TTGGAGGCCTGGAGCAGACCACCCTGCTGCACTGTG...CTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp TTCCTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCCCACAGAAGCTCTTCTaGGGCTGGCTGGGGCCTGGA +
Preference number: 4 (lower is better)
Translates to: FLTGGKDTPGVTREDTNCPQKLF*GWLGPG
Trigger: TCCAGGCCCCAGCCAGCCCCAGAAGAGCTTCTGTGG...GCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCACAGAAGCTCTTCTaGGGCTGGCTGGGGCCTGGA +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADIPQKLF*GWLGPG
Trigger: TCCAGGCCCCAGCCAGCCCCAGAAGAGCTTCTGTGG...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp AGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCATCTTGACTGCCTTCTGTGGGGAGGACCTTaGAATCCAACTGTGAGCCTG +
Preference number: 4 (lower is better)
Translates to: RELTFLAEQGWWGHLDCLLWGGP*NPTVSL
Trigger: CAGGCTCACAGTTGGATTTCAAGGTCCTCCCCACAG...AAGGCAGTCAAGATGCCCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCAGCAGCCCATGAGTCCTaGAAGCAGTGGCCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSAAHES*KQWPAA
Trigger: AGCAGCTGGCCACTGCTTTCAGGACTCATGGGCTGC...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp CCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGCAGCCCATGAGTCCTaGAAGCAGTGGCCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: PTAHTTHGWQTARELTFLAAHES*KQWPAA
Trigger: AGCAGCTGGCCACTGCTTTCAGGACTCATGGGCTGC...TAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCACCAGCACCATTGCACTaGCCCCAGGGCCCACAAAGA +
Preference number: 4 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSPAPLH*PQGPQR
Trigger: TCTTTGTGGGCCCTGGGGTCAGTGCAATGGTGCTGG...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTTGCCACACAGGGTCCTaGATGCAGACCTGCCCTGAC +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADICHTGS*MQTCPD
Trigger: GTCAGGGCAGGTCTGCATTCAGGACCCTGTGTGGCA...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp CCCGTGTCTGTGGCAGATAGCGACAAGGACACAGCTCAGAAGAAAGACCCTCAGAGCCTTCATCAAGGCTaGGCAGGGCCTGGACAGTGC +
Preference number: 4 (lower is better)
Translates to: PVSVADSDKDTAQKKDPQSLHQG*AGPGQC
Trigger: GCACTGTCCAGGCCCTGCTCAGCCTTGATGAAGGCT...CTGAGGGTCTTTCTTCTGAGCTGTGTCCTTGTCGCTATCTGCCACAGACACGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
CDS-3UTR TCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTAGCCTTCATCAAGGCTaGGCAGGGCCTGGACAGTGC +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADISLHQG*AGPGQC
Trigger: GCACTGTCCAGGCCCTGCTCAGCCTTGATGAAGGCT...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp AGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCATCTTGACTGCCTTGCTGCACCTGCCATGTaGTTGTGTCCAGAATGTGGG +
Preference number: 4 (lower is better)
Translates to: RELTFLAEQGWWGHLDCLAAPAM*LCPECG
Trigger: CCCACATTCTGGACACAAGCACATGGCAGGTGCAGC...AAGGCAGTCAAGATGCCCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp ACTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAAGGGCCACGTTGGTGTaGTCCAGGAAGGCTGGTAGG +
Preference number: 4 (lower is better)
Translates to: TREDTNCSYHSWVADSQGRATLV*SRKAGR
Trigger: CCTACCAGCCTTCCTGGAGCACACCAACGTGGCCCT...TCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp ACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCAGGGCCACGTTGGTGTaGTCCAGGAAGGCTGGTAGG +
Preference number: 4 (lower is better)
Translates to: TPTAHTTHGWQTARELTFRATLV*SRKAGR
Trigger: CCTACCAGCCTTCCTGGAGCACACCAACGTGGCCCT...GAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCTGCCACGGGCACAGTaGTCCAGCACCATTGCACTG +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADILPRAQ*SSTIAL
Trigger: CAGTGCAATGGTGCTGGAGCACTGTGCCCGTGGCAG...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp ACTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGACTGCCACGGGCACAGTaGTCCAGCACCATTGCACTG +
Preference number: 4 (lower is better)
Translates to: TREDTNCSYHSWVADSQGLPRAQ*SSTIAL
Trigger: CAGTGCAATGGTGCTGGAGCACTGTGCCCGTGGCAG...TCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGGCAGGTCTTCCAGTGTaGTGCTGTCCAGTTCTGGCC +
Preference number: 4 (lower is better)
Translates to: LGKTPTAHTTHGWQTAREAGLPV*CCPVLA
Trigger: GGCCAGAACTGGACAGCACCACACTGGAAGACCTGC...CTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAATGCTGGGGAGGGCCTaGGCAAAGATGGGGTCACAG +
Preference number: 4 (lower is better)
Translates to: PTAHTTHGWQTARELTFLMLGRA*AKMGSQ
Trigger: CTGTGACCCCATCTTTGCCCAGGCCCTCCCCAGCAT...TAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp TTCCTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCATGCTGGGGAGGGCCTaGGCAAAGATGGGGTCACAG +
Preference number: 4 (lower is better)
Translates to: FLTGGKDTPGVTREDTNCMLGRA*AKMGSQ
Trigger: CTGTGACCCCATCTTTGCCCAGGCCCTCCCCAGCAT...GCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp ACTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGTCACCTCCTCCCTCTaGAGCTTCACAGGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: TREDTNCSYHSWVADSQGVTSSL*SFTGPG
Trigger: TCCTGGGCCTGTGAAGCTCCAGAGGGAGGAGGTGAC...TCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCTACACAGTGCAGCAGGGTaGTCTGCTCCAGGCCTCCAA +
Preference number: 4 (lower is better)
Translates to: PTAHTTHGWQTARELTFLHSAAG*SAPGLQ
Trigger: TTGGAGGCCTGGAGCAGACCACCCTGCTGCACTGTG...TAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGGCTCTGGCTCCAAGTTaGCAGTTGCCCCTCCACTCA +
Preference number: 4 (lower is better)
Translates to: LGKTPTAHTTHGWQTAREALAPS*QLPLHS
Trigger: TGAGTGGAGGGGCAACTGCCAACTTGGAGCCAGAGC...CTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGTGGGGACACCTGCTCTaGCTCCAAGTTGGCAGTTGC +
Preference number: 4 (lower is better)
Translates to: LGKTPTAHTTHGWQTAREWGHLL*LQVGSC
Trigger: GCAACTGCCAACTTGGAGCCAGAGCAGGTGTCCCCA...CTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTGGCTCAGCCAGTCCCTaGCGTGCTTTGGCAAAGCCA +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADIGSASP*RALAKP
Trigger: TGGCTTTGCCAAAGCACGCCAGGGACTGGCTGAGCC...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGGCTCAGCCAGTCCCTaGCGTGCTTTGGCAAAGCCA +
Preference number: 4 (lower is better)
Translates to: PTAHTTHGWQTARELTFLGSASP*RALAKP
Trigger: TGGCTTTGCCAAAGCACGCCAGGGACTGGCTGAGCC...TAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCACCTCCCCTGATTTTCTaGGCTCAGCCAGTCCCTGGC +
Preference number: 4 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSPPLIF*AQPVPG
Trigger: GCCAGGGACTGGCTGAGCCCAGAAAATCAGGGGAGG...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp ACTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGGGGCTGCACACCTCTaGTGCATAGTGTGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: TREDTNCSYHSWVADSQGGAAHL*CIVCWG
Trigger: ACCCCAACACACTATGCATCAGAGGTGTGCAGCCCC...TCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp ACTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGATCCGCTGGAGGAAGGTaGGCTCCTGAGATGTCAGCA +
Preference number: 4 (lower is better)
Translates to: TREDTNCSYHSWVADSQGSAGGR*APEMSA
Trigger: TGCTGACATCTCAGGAGCTCACCTTCCTCCAGCGGA...TCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTTCCGCTGGAGGAAGGTaGGCTCCTGAGATGTCAGCA +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADISAGGR*APEMSA
Trigger: TGCTGACATCTCAGGAGCTCACCTTCCTCCAGCGGA...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp AGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCATCTTGACTGCCTTACAGTAAGGAGGCCTTaGAGGTCCAGTCTAGCCTCA +
Preference number: 4 (lower is better)
Translates to: RELTFLAEQGWWGHLDCLTVRRP*RSSLAS
Trigger: TGAGGCTAGACTGGACCTTCAAGGCCTCCTTACTGT...AAGGCAGTCAAGATGCCCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp AGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCATCTTGACTGCCTTATGCCACCTTCCGGATaGTCTCTTCTGCTGAGAGTC +
Preference number: 4 (lower is better)
Translates to: RELTFLAEQGWWGHLDCLMPPSG*SLLLRV
Trigger: GACTCTCAGCAGAAGAGATCATCCGGAAGGTGGCAT...AAGGCAGTCAAGATGCCCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp ACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCATACTGCCACACAGGGTCCTaGATGCAGACCTGCCCTGAC +
Preference number: 4 (lower is better)
Translates to: TGGKDTPGVTREDTNCSYCHTGS*MQTCPD
Trigger: GTCAGGGCAGGTCTGCATTCAGGACCCTGTGTGGCA...GTATGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp ACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCATACAGCCTTCATCAAGGCTaGGCAGGGCCTGGACAGTGC +
Preference number: 4 (lower is better)
Translates to: TGGKDTPGVTREDTNCSYSLHQG*AGPGQC
Trigger: GCACTGTCCAGGCCCTGCTCAGCCTTGATGAAGGCT...GTATGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp ACTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGACACTGTGGAGCTGCTTaGAAACCTCTGTGGCCCCCT +
Preference number: 4 (lower is better)
Translates to: TREDTNCSYHSWVADSQGHCGAA*KPLWPP
Trigger: AGGGGGCCACAGAGGTTTGCAAGCAGCTCCACAGTG...TCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp CCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCTACCCAGAGGCTGCACCTaGCATGTGCTTGTGTCCAGA +
Preference number: 4 (lower is better)
Translates to: PTAHTTHGWQTARELTFLPRGCT*HVLVSR
Trigger: TCTGGACACAAGCACATGGCAGGTGCAGCCTCTGGG...TAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp ACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCGGCTTTCCCAGAGGCTaGACCTGCCATGTGCTTGTG +
Preference number: 4 (lower is better)
Translates to: TPTAHTTHGWQTARELTFGFPRG*TCHVLV
Trigger: CACAAGCACATGGCAGGTGCAGCCTCTGGGAAAGCC...GAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp ACTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGGCTTTCCCAGAGGCTaGACCTGCCATGTGCTTGTG +
Preference number: 4 (lower is better)
Translates to: TREDTNCSYHSWVADSQGGFPRG*TCHVLV
Trigger: CACAAGCACATGGCAGGTGCAGCCTCTGGGAAAGCC...TCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTAGGCTGCCCAGGGGCTaGACACCTCTGATGCATAGT +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADIRLPRG*TPLMHS
Trigger: ACTATGCATCAGAGGTGTGCAGCCCCTGGGCAGCCT...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp ACTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAAGGCTGCCCAGGGGCTaGACACCTCTGATGCATAGT +
Preference number: 4 (lower is better)
Translates to: TREDTNCSYHSWVADSQGRLPRG*TPLMHS
Trigger: ACTATGCATCAGAGGTGTGCAGCCCCTGGGCAGCCT...TCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp CTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCACTTCTTGACTCACTaGCGCTGTCCACATGTGGCC +
Preference number: 4 (lower is better)
Translates to: LGKTPTAHTTHGWQTAREHFLTH*RCPHVA
Trigger: GGCCACATGTGGACAGCGGCAGTGAGTCAAGAAGTG...CTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp CCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCTACAGAGGAGGGGGAGATaGCACCTTCCGGATGATCTC +
Preference number: 4 (lower is better)
Translates to: PTAHTTHGWQTARELTFLQRRGR*HLPDDL
Trigger: GAGATCATCCGGAAGGTGGCATCTCCCCCTCCTCTG...TAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCAGAGGAGGGGGAGATaGCACCTTCCGGATGATCTC +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADIQRRGR*HLPDDL
Trigger: GAGATCATCCGGAAGGTGGCATCTCCCCCTCCTCTG...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp CCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAACACAGGGTCCTGAATaGAGACCTGCCCTGACACGG +
Preference number: 4 (lower is better)
Translates to: PTAHTTHGWQTARELTFLTQGPE*RPALTR
Trigger: CCGTGTCAGGGCAGGTCTGCATTCAGGACCCTGTGT...TAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp ACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCACACAGGGTCCTGAATaGAGACCTGCCCTGACACGG +
Preference number: 4 (lower is better)
Translates to: TPTAHTTHGWQTARELTFTQGPE*RPALTR
Trigger: CCGTGTCAGGGCAGGTCTGCATTCAGGACCCTGTGT...GAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp ACTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCAGGTCTTCCAGTGTaGTGCTGTCCAGTTCTGGCC +
Preference number: 4 (lower is better)
Translates to: TREDTNCSYHSWVADSQGAGLPV*CCPVLA
Trigger: GGCCAGAACTGGACAGCACCACACTGGAAGACCTGC...TCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp ACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCATACGTCACCTCCTCCCTCTaGAGCTTCACAGGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: TGGKDTPGVTREDTNCSYVTSSL*SFTGPG
Trigger: TCCTGGGCCTGTGAAGCTCCAGAGGGAGGAGGTGAC...GTATGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCAGCTGCTGGGCTGTaGTTACCCAGATGTCCTGGT +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADIPAAGL*LPRCPG
Trigger: ACCAGGACATCTGGGTAACCACAGCCCAGCAGCTGG...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp TTCCTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCGCTTGCAAACCTCTGTaGCCCCCTTCTCTCCAGGTC +
Preference number: 4 (lower is better)
Translates to: FLTGGKDTPGVTREDTNCACKPL*PPSLQV
Trigger: GACCTGGAGAGAAGGGGGCCACAGAGGTTTGCAAGC...GCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAGGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTGCTTGCAAACCTCTGTaGCCCCCTTCTCTCCAGGTC +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADIACKPL*PPSLQV
Trigger: GACCTGGAGAGAAGGGGGCCACAGAGGTTTGCAAGC...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCAGCTCTGGCTCCAAGTTaGCAGTTGCCCCTCCACTCA +
Preference number: 4 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSALAPS*QLPLHS
Trigger: TGAGTGGAGGGGCAACTGCCAACTTGGAGCCAGAGC...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp ACTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGATGGGGACACCTGCTCTaGCTCCAAGTTGGCAGTTGC +
Preference number: 4 (lower is better)
Translates to: TREDTNCSYHSWVADSQGWGHLL*LQVGSC
Trigger: GCAACTGCCAACTTGGAGCCAGAGCAGGTGTCCCCA...TCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp AGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCATCTTGACTGCCTTGATCTGGTCCAAGCTTaGCCTGTCATCTGGAGCTTC +
Preference number: 4 (lower is better)
Translates to: RELTFLAEQGWWGHLDCLDLVQA*PVIWSF
Trigger: GAAGCTCCAGATGACAGGCCAAGCTTGGACCAGATC...AAGGCAGTCAAGATGCCCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCATTCTGGCCTTCAAAGTaGCAGCCCTGCTGCAGACCT +
Preference number: 4 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSFWPSK*QPCCRP
Trigger: AGGTCTGCAGCAGGGCTGTCACTTTGAAGGCCAGAA...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp ACTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAAGGAAGGTGAGCTCCTaGGATGTCAGCAGGATCCGA +
Preference number: 4 (lower is better)
Translates to: TREDTNCSYHSWVADSQGRKVSS*DVSRIR
Trigger: TCGGATCCTGCTGACATCTCAGGAGCTCACCTTCCT...TCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCAAGGAAGGTGAGCTCCTaGGATGTCAGCAGGATCCGA +
Preference number: 4 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSRKVSS*DVSRIR
Trigger: TCGGATCCTGCTGACATCTCAGGAGCTCACCTTCCT...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp TTCCTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCGGCCTGGAAGAACAGTaGGACTCCAGGAACTCTGCA +
Preference number: 4 (lower is better)
Translates to: FLTGGKDTPGVTREDTNCGLEEQ*DSRNSA
Trigger: TGCAGAGTTCCTGGAGTCTCACTGTTCTTCCAGGCC...GCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp CTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGATGCCACCTTCCGGATaGTCTCTTCTGCTGAGAGTC +
Preference number: 4 (lower is better)
Translates to: LGKTPTAHTTHGWQTAREMPPSG*SLLLRV
Trigger: GACTCTCAGCAGAAGAGATCATCCGGAAGGTGGCAT...CTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp AGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCATCTTGACTGCCTTATTGGGCTAGCCTTCTaGCTTTCCCATCTGTTCGGA +
Preference number: 4 (lower is better)
Translates to: RELTFLAEQGWWGHLDCLIGLAF*LSHLFG
Trigger: TCCGAACAGATGGGAAAGGCAGAAGGCTAGCCCAAT...AAGGCAGTCAAGATGCCCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTGCTGCACCTGCCATGTaGTTGTGTCCAGAATGTGGG +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADIAAPAM*LCPECG
Trigger: CCCACATTCTGGACACAAGCACATGGCAGGTGCAGC...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCACTTCTTGACTCACTaGCGCTGTCCACATGTGGCC +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADIHFLTH*RCPHVA
Trigger: GGCCACATGTGGACAGCGGCAGTGAGTCAAGAAGTG...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp AGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCATCTTGACTGCCTTTCCTCCCAGCATAGCTaGATCAACTGGATACACTCG +
Preference number: 4 (lower is better)
Translates to: RELTFLAEQGWWGHLDCLSSQHS*INWIHS
Trigger: CGAGTGTATCCAGTTGATGCAGCTATGCTGGGAGGA...AAGGCAGTCAAGATGCCCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp ACTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGATGGTTTATGCGGTCCTaGCATGGGTCTCCAGGCTTG +
Preference number: 4 (lower is better)
Translates to: TREDTNCSYHSWVADSQGWFMRS*HGSPGL
Trigger: CAAGCCTGGAGACCCATGGCAGGACCGCATAAACCA...TCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp AGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCATCTTGACTGCCTTTGGGTAGGAACCAACTaGCTTCCTTCACCATCTGTG +
Preference number: 4 (lower is better)
Translates to: RELTFLAEQGWWGHLDCLWVGTN*LPSPSV
Trigger: CACAGATGGTGAAGGAAGCCAGTTGGTTCCTACCCA...AAGGCAGTCAAGATGCCCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTTCCTCAGTCCGCTCCTaGACCAGATCTTCCAGGCTT +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADISSVRS*TRSSRL
Trigger: AAGCCTGGAAGATCTGGTCCAGGAGCGGACTGAGGA...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp CTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGAGCCAAAGTGTCTCATaGCAGACAGTAGCACATCGG +
Preference number: 4 (lower is better)
Translates to: LGKTPTAHTTHGWQTARESQSVS*QTVAHR
Trigger: CCGATGTGCTACTGTCTGTCATGAGACACTTTGGCT...CTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCAACAGTAAGGAGGCCTTaGAGGTCCAGTCTAGCCTCA +
Preference number: 4 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSTVRRP*RSSLAS
Trigger: TGAGGCTAGACTGGACCTTCAAGGCCTCCTTACTGT...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp TTCCTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCGATGATCTCTTCTGCTaGGAGTCCCCAGGAGCAGTA +
Preference number: 4 (lower is better)
Translates to: FLTGGKDTPGVTREDTNCDDLFC*ESPGAV
Trigger: TACTGCTCCTGGGGACTCTCAGCAGAAGAGATCATC...GCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp CCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGATGATCTCTTCTGCTaGGAGTCCCCAGGAGCAGTA +
Preference number: 4 (lower is better)
Translates to: PTAHTTHGWQTARELTFLDDLFC*ESPGAV
Trigger: TACTGCTCCTGGGGACTCTCAGCAGAAGAGATCATC...TAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp CCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGCGTGTAGAGATCATTaGGGAAGCCCACCACCTCAA +
Preference number: 4 (lower is better)
Translates to: PTAHTTHGWQTARELTFLACRDH*GSPPPQ
Trigger: TTGAGGTGGTGGGCTTCCTCAATGATCTCTACACGC...TAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp ACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCGCGTGTAGAGATCATTaGGGAAGCCCACCACCTCAA +
Preference number: 4 (lower is better)
Translates to: TPTAHTTHGWQTARELTFACRDH*GSPPPQ
Trigger: TTGAGGTGGTGGGCTTCCTCAATGATCTCTACACGC...GAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp CTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGGCAGCGCCGAGTGCATaGACAGAACCACAATTTTCA +
Preference number: 4 (lower is better)
Translates to: LGKTPTAHTTHGWQTAREAAPSA*TEPQFS
Trigger: TGAAAATTGTGGTTCTGTGCATGCACTCGGCGCTGC...CTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp AGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCATCTTGACTGCCTTGCAGTAACATTCTCATaGCGCATCTCCCGCAACTTT +
Preference number: 4 (lower is better)
Translates to: RELTFLAEQGWWGHLDCLAVTFS*RISRNF
Trigger: AAAGTTGCGGGAGATGCGGCATGAGAATGTTACTGC...AAGGCAGTCAAGATGCCCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp ACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCCGCAGAAGGTAAAGTaGGCACTAAGTCACCTCCTC +
Preference number: 4 (lower is better)
Translates to: TPTAHTTHGWQTARELTFPQKVK*ALSHLL
Trigger: GAGGAGGTGACTTAGTGCCCACTTTACCTTCTGCGG...GAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp ACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCGATAGTTCCAAAGAGTaGGGACACCTGCTCTGGCTC +
Preference number: 4 (lower is better)
Translates to: TPTAHTTHGWQTARELTFDSSKE*GHLLWL
Trigger: GAGCCAGAGCAGGTGTCCCCACTCTTTGGAACTATC...GAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTGATAGTTCCAAAGAGTaGGGACACCTGCTCTGGCTC +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADIDSSKE*GHLLWL
Trigger: GAGCCAGAGCAGGTGTCCCCACTCTTTGGAACTATC...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGAAGCTAAGGCTACTTaGCCGAAGATCAGGAGCCAC +
Preference number: 4 (lower is better)
Translates to: PTAHTTHGWQTARELTFLEAKAT*PKIRSH
Trigger: GTGGCTCCTGATCTTCGGCCAAGTAGCCTTAGCTTC...TAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCAGAAGCTAAGGCTACTTaGCCGAAGATCAGGAGCCAC +
Preference number: 4 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSEAKAT*PKIRSH
Trigger: GTGGCTCCTGATCTTCGGCCAAGTAGCCTTAGCTTC...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCACATAGCTGCATCAACTaGATACACTCGAGGGGACCC +
Preference number: 4 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSHSCIN*IHSRGP
Trigger: GGGTCCCCTCGAGTGTATCCAGTTGATGCAGCTATG...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCATAGCTGCATCAACTaGATACACTCGAGGGGACCC +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADIHSCIN*IHSRGP
Trigger: GGGTCCCCTCGAGTGTATCCAGTTGATGCAGCTATG...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCAGATCTGGTCCAAGCTTaGCCTGTCATCTGGAGCTTC +
Preference number: 4 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSDLVQA*PVIWSF
Trigger: GAAGCTCCAGATGACAGGCCAAGCTTGGACCAGATC...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp ACTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGAGACAGTCTTCAGATaGCTGACAGTGAGTCTCCAC +
Preference number: 4 (lower is better)
Translates to: TREDTNCSYHSWVADSQGETVFR*LTVSLH
Trigger: GTGGAGACTCACTGTCAGTCATCTGAAGACTGTCTC...TCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp AGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCATCTTGACTGCCTTTACCACAGAGAGGACTaGTATGGAAGAGACAGTCTT +
Preference number: 4 (lower is better)
Translates to: RELTFLAEQGWWGHLDCLYHRED*YGRDSL
Trigger: AAGACTGTCTCTTCCATATCAGTCCTCTCTGTGGTA...AAGGCAGTCAAGATGCCCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp CTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGGCAGTAACATTCTCATaGCGCATCTCCCGCAACTTT +
Preference number: 4 (lower is better)
Translates to: LGKTPTAHTTHGWQTAREAVTFS*RISRNF
Trigger: AAAGTTGCGGGAGATGCGGCATGAGAATGTTACTGC...CTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp TTCCTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCCTCCCAGCATAGCTaGATCAACTGGATACACTCG +
Preference number: 4 (lower is better)
Translates to: FLTGGKDTPGVTREDTNCSSQHS*INWIHS
Trigger: CGAGTGTATCCAGTTGATGCAGCTATGCTGGGAGGA...GCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp ACCCTCAGTGCTGGATGCTGGATGTGTATGGCATGTCCCTGTGTGGTGTCCCCACATCCGAAAGTTGCCTaGATAGCTAAGGATGTCCAG +
Preference number: 4 (lower is better)
Translates to: TLSAGCWMCMACPCVVSPHPKVA*IAKDVQ
Trigger: CTGGACATCCTTAGCTATGCAGGCAACTTTCGGATG...TGGGGACACCACACAGGGACATGCCATACACATCCAGCATCCAGCACTGAGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
CDS-3UTR CCA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCATGGGTAGGAACCAACTaGCTTCCTTCACCATCTGTG +
Preference number: 4 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSWVGTN*LPSPSV
Trigger: CACAGATGGTGAAGGAAGCCAGTTGGTTCCTACCCA...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp ACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCATACGCAGCGCCGAGTGCATaGACAGAACCACAATTTTCA +
Preference number: 4 (lower is better)
Translates to: TGGKDTPGVTREDTNCSYAAPSA*TEPQFS
Trigger: TGAAAATTGTGGTTCTGTGCATGCACTCGGCGCTGC...GTATGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp ACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCATACATTGGGCTAGCCTTCTaGCTTTCCCATCTGTTCGGA +
Preference number: 4 (lower is better)
Translates to: TGGKDTPGVTREDTNCSYIGLAF*LSHLFG
Trigger: TCCGAACAGATGGGAAAGGCAGAAGGCTAGCCCAAT...GTATGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp CTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGAGACTCCAGGAACTCTaGATAGCCATGATCAGTGAT +
Preference number: 4 (lower is better)
Translates to: LGKTPTAHTTHGWQTARERLQEL*IAMISD
Trigger: ATCACTGATCATGGCTATGCAGAGTTCCTGGAGTCT...CTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCATCCGAAAGTTGCCTaGATAGCTAAGGATGTCCAG +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADIHPKVA*IAKDVQ
Trigger: CTGGACATCCTTAGCTATGCAGGCAACTTTCGGATG...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCTATCCAGGATGACATATTaGGCTAGCCTTCTGCCTTTC +
Preference number: 4 (lower is better)
Translates to: PTAHTTHGWQTARELTFLSRMTY*ASLLPF
Trigger: GAAAGGCAGAAGGCTAGCCCAATATGTCATCCTGGA...TAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCATCCAGGATGACATATTaGGCTAGCCTTCTGCCTTTC +
Preference number: 4 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSSRMTY*ASLLPF
Trigger: GAAAGGCAGAAGGCTAGCCCAATATGTCATCCTGGA...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp ACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCTACCACAGAGAGGACTaGTATGGAAGAGACAGTCTT +
Preference number: 4 (lower is better)
Translates to: TPTAHTTHGWQTARELTFYHRED*YGRDSL
Trigger: AAGACTGTCTCTTCCATATCAGTCCTCTCTGTGGTA...GAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCAAGACTCCAGGAACTCTaGATAGCCATGATCAGTGAT +
Preference number: 4 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSRLQEL*IAMISD
Trigger: ATCACTGATCATGGCTATGCAGAGTTCCTGGAGTCT...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR GCA 90 bp ACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCATACCATCCGAAAGTTGCCTaGATAGCTAAGGATGTCCAG +
Preference number: 4 (lower is better)
Translates to: TGGKDTPGVTREDTNCSYHPKVA*IAKDVQ
Trigger: CTGGACATCCTTAGCTATGCAGGCAACTTTCGGATG...GTATGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp ACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCGTTCAGTCTGACCTCTaGCATCAATTTTGTAGCCTT +
Preference number: 4 (lower is better)
Translates to: TPTAHTTHGWQTARELTFVQSDL*HQFCSL
Trigger: AAGGCTACAAAATTGATGTCAGAGGTCAGACTGAAC...GAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp TTCCTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCGTTCAGTCTGACCTCTaGCATCAATTTTGTAGCCTT +
Preference number: 4 (lower is better)
Translates to: FLTGGKDTPGVTREDTNCVQSDL*HQFCSL
Trigger: AAGGCTACAAAATTGATGTCAGAGGTCAGACTGAAC...GCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CCA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTACCTTATACACATCATaGCTGTCGAGAACAGCATCA +
Preference number: 4 (lower is better)
Translates to: DTNCSYHSWVADSQGADITLYTS*LSRTAS
Trigger: TGATGCTGTTCTCGACAGCCATGATGTGTATAAGGT...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
3UTR CAA 72 bp GGCCCAAGCTCTAAAGCATCTTCCTCATGCCACCCTTaGATGTTCTGTCAATGTAAGAGTCCCGTGTCTGTG +
Preference number: 4 (lower is better)
Translates to: GPSSKASSSCHP*MFCQCKSPVSV
Trigger: CACAGACACGGGACTCTTACATTGACAGAACATCAAAGGGTGGCATGAGGAAGATGCTTTAGAGCTTGGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
CDS-3UTR CCA 90 bp ACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCATACCAGAGAGGACTGATATaGAAGAGACAGTCTTCAGAT +
Preference number: 4 (lower is better)
Translates to: TGGKDTPGVTREDTNCSYQRGLI*KRQSSD
Trigger: ATCTGAAGACTGTCTCTTCCATATCAGTCCTCTCTG...GTATGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR TCA 90 bp CAAATTATGTATTTCCCAGGTCTTTCCAGTAGTCAGGCCTTTGATGATCTAAAATGCCACACAGGGTCCTaGATGCAGACCTGCCCTGAC +
Preference number: 4 (lower is better)
Translates to: QIMYFPGLSSSQAFDDLKCHTGS*MQTCPD
Trigger: GTCAGGGCAGGTCTGCATTCAGGACCCTGTGTGGCA...TTTTAGATCATCAAAGGCCTGACTACTGGAAAGACCTGGGAAATACATAATTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
CDS-3UTR TCA 90 bp ACTAGGCAAATTATGTATTTCCCAGGTCTTTCCAGTAGTCAGGCCTTTGATGATGCGTGTAGAGATCATTaGGGAAGCCCACCACCTCAA +
Preference number: 4 (lower is better)
Translates to: TRQIMYFPGLSSSQAFDDACRDH*GSPPPQ
Trigger: TTGAGGTGGTGGGCTTCCTCAATGATCTCTACACGC...ATCATCAAAGGCCTGACTACTGGAAAGACCTGGGAAATACATAATTTGCCTAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
CDS-3UTR TCA 90 bp ACTAGGCAAATTATGTATTTCCCAGGTCTTTCCAGTAGTCAGGCCTTTGATGATGTTCAGTCTGACCTCTaGCATCAATTTTGTAGCCTT +
Preference number: 4 (lower is better)
Translates to: TRQIMYFPGLSSSQAFDDVQSDL*HQFCSL
Trigger: AAGGCTACAAAATTGATGTCAGAGGTCAGACTGAAC...ATCATCAAAGGCCTGACTACTGGAAAGACCTGGGAAATACATAATTTGCCTAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
CDS-3UTR CCA 90 bp CACCCATTCACACAGAGACAGTGCTTAGTTAGCACTAGGCAAATTATGTATTTCACCTTATACACATCATaGCTGTCGAGAACAGCATCA +
Preference number: 4 (lower is better)
Translates to: HPFTQRQCLVSTRQIMYFTLYTS*LSRTAS
Trigger: TGATGCTGTTCTCGACAGCCATGATGTGTATAAGGT...GAAATACATAATTTGCCTAGTGCTAACTAAGCACTGTCTCTGTGTGAATGGGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
CDS GCA 90 bp CACCTCCTCCCTCTGGAGCTTCACAGGCCCAGGAGAAGAGGGACTTaGCCCAGCCTTGGGCCAGCAGGGCTGCTGCTGAGCAGAACCCAG +
Preference number: 5 (lower is better)
Translates to: HLLPLELHRPRRRGT*PSLGPAGLLLSRTQ
Trigger: CTGGGTTCTGCTCAGCAGCAGCCCTGCTGGCCCAAGGCTGGGGCAAGTCCCTCTTCTCCTGGGCCTGTGAAGCTCCAGAGGGAGGAGGTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 90 bp CCGTCTGTGAGGCCCTCCTCCCAGGCACAGTGCAGCAGGGTGGTCTaGTCCAGGCCTCCAAGCAGCGCCGAGTGCATGCACAGAACCACA +
Preference number: 5 (lower is better)
Translates to: PSVRPSSQAQCSRVV*SRPPSSAECMHRTT
Trigger: TGTGGTTCTGTGCATGCACTCGGCGCTGCTTGGAGGCCTGGAGCAGACCACCCTGCTGCACTGTGCCTGGGAGGAGGGCCTCACAGACGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 90 bp CAGCAGGTCCTCCAGGCTGCCACGGGCACAGTGCTCCAGCACCATTaGACTGACCCCAGGGCCCACAAAGAGGCCCAGGAAGGCAGTAAC +
Preference number: 5 (lower is better)
Translates to: QQVLQAATGTVLQHH*TDPRAHKEAQEGSN
Trigger: GTTACTGCCTTCCTGGGCCTCTTTGTGGGCCCTGGGGTCAGTGCAATGGTGCTGGAGCACTGTGCCCGTGGCAGCCTGGAGGACCTGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS TCA 90 bp CAAAGAGCAGCGTGTCGTAGGGCAGGAAGACCAGCCTTCCGTCTGTaGGGCCCTCCTCCCAGGCACAGTGCAGCAGGGTGGTCTGCTCCA +
Preference number: 5 (lower is better)
Translates to: QRAACRRAGRPAFRL*GPPPRHSAAGWSAP
Trigger: TGGAGCAGACCACCCTGCTGCACTGTGCCTGGGAGGAGGGCCTCACAGACGGAAGGCTGGTCTTCCTGCCCTACGACACGCTGCTCTTTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 90 bp GAGTCTCCACGGGCCCTGGCAGGGCAGGCAGGTCTTCCAGTGTGGTaGTGTCCAGTTCTGGCCTTCAAAGTGACAGCCCTGCTGCAGACC +
Preference number: 5 (lower is better)
Translates to: ESPRALAGQAGLPVW*CPVLAFKVTALLQT
Trigger: GGTCTGCAGCAGGGCTGTCACTTTGAAGGCCAGAACTGGACAGCACCACACTGGAAGACCTGCCTGCCCTGCCAGGGCCCGTGGAGACTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 90 bp AGTGAGTCTCCACGGGCCCTGGCAGGGCAGGCAGGTCTTCCAGTGTaGTGCTGTCCAGTTCTGGCCTTCAAAGTGACAGCCCTGCTGCAG +
Preference number: 5 (lower is better)
Translates to: SESPRALAGQAGLPV*CCPVLAFKVTALLQ
Trigger: CTGCAGCAGGGCTGTCACTTTGAAGGCCAGAACTGGACAGCACCACACTGGAAGACCTGCCTGCCCTGCCAGGGCCCGTGGAGACTCACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTGGACTTGCCCCAGCCTaGGGCCAGCAGGGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: DTNCSYHSWVADSQGADIGLAPA*GQQGCC
Trigger: GCAGCAGCCCTGCTGGCCCAAGGCTGGGGCAAGTCC...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCAGGACTTGCCCCAGCCTaGGGCCAGCAGGGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSGLAPA*GQQGCC
Trigger: GCAGCAGCCCTGCTGGCCCAAGGCTGGGGCAAGTCC...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp AGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCATCTTGACTGCCTTAGGCTGGTAGGCTCCTaGCTGACCCCTGGGTCACCG +
Preference number: 5 (lower is better)
Translates to: RELTFLAEQGWWGHLDCLRLVGS*LTPGSP
Trigger: CGGTGACCCAGGGGTCAGCAAGGAGCCTACCAGCCT...AAGGCAGTCAAGATGCCCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS TCA 90 bp AGGCTATCGTCAGAGTCAGGAGGCTGCCCAGGGGCTGCACACCTCTaGTGCATAGTGTGTTGGGGTCGAACCAGCAGCTGGCGTCATGGG +
Preference number: 5 (lower is better)
Translates to: RLSSESGGCPGAAHL*CIVCWGRTSSWRHG
Trigger: CCCATGACGCCAGCTGCTGGTTCGACCCCAACACACTATGCATCAGAGGTGTGCAGCCCCTGGGCAGCCTCCTGACTCTGACGATAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 90 bp GCCAGGACACAGGCTATCGTCAGAGTCAGGAGGCTGCCCAGGGGCTaGACACCTCTGATGCATAGTGTGTTGGGGTCGAACCAGCAGCTG +
Preference number: 5 (lower is better)
Translates to: ARTQAIVRVRRLPRG*TPLMHSVLGSNQQL
Trigger: CAGCTGCTGGTTCGACCCCAACACACTATGCATCAGAGGTGTGCAGCCCCTGGGCAGCCTCCTGACTCTGACGATAGCCTGTGTCCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 90 bp TTCTTCAGCCATACCCACTCTCCCTGGTACAGGGCCACGTTGGTGTaGTCCAGGAAGGCTGGTAGGCTCCTTGCTGACCCCTGGGTCACC +
Preference number: 5 (lower is better)
Translates to: FFSHTHSPWYRATLV*SRKAGRLLADPWVT
Trigger: GGTGACCCAGGGGTCAGCAAGGAGCCTACCAGCCTTCCTGGAGCACACCAACGTGGCCCTGTACCAGGGAGAGTGGGTATGGCTGAAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 90 bp CTTGGCCTGTCATCTGGAGCTTCCTCCCAGCATAGCTGCATCAACTaGATACACTCGAGGGGACCCTGGTCAGGGGACACCAGTGGCCGG +
Preference number: 5 (lower is better)
Translates to: LGLSSGASSQHSCIN*IHSRGPWSGDTSGR
Trigger: CCGGCCACTGGTGTCCCCTGACCAGGGTCCCCTCGAGTGTATCCAGTTGATGCAGCTATGCTGGGAGGAAGCTCCAGATGACAGGCCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp TGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGCCTGTGGGGAGGACCTaGAAATCCAACTGTGAGCCT +
Preference number: 5 (lower is better)
Translates to: WVADSQGADIPSRAGVVGPVGRT*KSNCEP
Trigger: AGGCTCACAGTTGGATTTCAAGGTCCTCCCCACAGG...CCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp CTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCAGGAGAAGAGGGACTaGCCCCAGCCTTGGGCCAGC +
Preference number: 5 (lower is better)
Translates to: LGKTPTAHTTHGWQTAREQEKRD*PQPWAS
Trigger: GCTGGCCCAAGGCTGGGGCAAGTCCCTCTTCTCCTG...CTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 90 bp ACGTTGGTGTGCTCCAGGAAGGCTGGTAGGCTCCTTGCTGACCCCTaGGTCACCGACCGTGGACTTCCACCATCCACCACACTTCTTGAC +
Preference number: 5 (lower is better)
Translates to: TLVCSRKAGRLLADP*VTDRGLPPSTTLLD
Trigger: GTCAAGAAGTGTGGTGGATGGTGGAAGTCCACGGTCGGTGACCCAGGGGTCAGCAAGGAGCCTACCAGCCTTCCTGGAGCACACCAACGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 90 bp GGACCTGGCCCAGCCTCCCCTGATTTTCTGGGCTCAGCCAGTCCCTaGCGTGCTTTGGCAAAGCCAGTCCGGATTTCTTGGTTTATGCGG +
Preference number: 5 (lower is better)
Translates to: GPGPASPDFLGSASP*RALAKPVRISWFMR
Trigger: CCGCATAAACCAAGAAATCCGGACTGGCTTTGCCAAAGCACGCCAGGGACTGGCTGAGCCCAGAAAATCAGGGGAGGCTGGGCCAGGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp CCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCTACAGGAGAAGAGGGACTaGCCCCAGCCTTGGGCCAGC +
Preference number: 5 (lower is better)
Translates to: PTAHTTHGWQTARELTFLQEKRD*PQPWAS
Trigger: GCTGGCCCAAGGCTGGGGCAAGTCCCTCTTCTCCTG...TAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp TGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGCTGAAAACATCACCTTaGAAGGTGGCCTTCCCAGGC +
Preference number: 5 (lower is better)
Translates to: WVADSQGADIPSRAGVVGLKTSP*KVAFPG
Trigger: GCCTGGGAAGGCCACCTTCAAAGGTGATGTTTTCAG...CCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp TGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGACTCGGGCTCCACTGTaGTCCCCATCTTTAGAGCAT +
Preference number: 5 (lower is better)
Translates to: WVADSQGADIPSRAGVVGTRAPL*SPSLEH
Trigger: ATGCTCTAAAGATGGGGACAACAGTGGAGCCCGAGT...CCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS TCA 90 bp GACCCACAACACCTGCCACACAGGGTCCTGAATGCAGACCTGCCCTaGCACGGATGGGTACATCGGGTGCATGCCTCATCCGAAAGTTGC +
Preference number: 5 (lower is better)
Translates to: DPQHLPHRVLNADLP*HGWVHRVHASSESC
Trigger: GCAACTTTCGGATGAGGCATGCACCCGATGTACCCATCCGTGTCAGGGCAGGTCTGCATTCAGGACCCTGTGTGGCAGGTGTTGTGGGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098274.5
ENSMUST00000205350.2
ENSMUST00000206435.2
CDS GCA 90 bp GAAGGCGTGGCTCTCAGGACTGGACTCCAGACTGACAGTGAGTACTaGGTCATAGGCTTCCTGAAGGGGCCCATGGTCATCCAGGACCAG +
Preference number: 5 (lower is better)
Translates to: EGVALRTGLQTDSEY*VIGFLKGPMVIQDQ
Trigger: CTGGTCCTGGATGACCATGGGCCCCTTCAGGAAGCCTATGACGCAGTACTCACTGTCAGTCTGGAGTCCAGTCCTGAGAGCCACGCCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 90 bp TGGTCCAAGCTTGGCCTGTCATCTGGAGCTTCCTCCCAGCATAGCTaGATCAACTGGATACACTCGAGGGGACCCTGGTCAGGGGACACC +
Preference number: 5 (lower is better)
Translates to: WSKLGLSSGASSQHS*INWIHSRGPWSGDT
Trigger: GGTGTCCCCTGACCAGGGTCCCCTCGAGTGTATCCAGTTGATGCAGCTATGCTGGGAGGAAGCTCCAGATGACAGGCCAAGCTTGGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 90 bp GCTCAGGAGCCGTCCACAGAAGCTCTTCTGGGGCTGGCTGGGGCCTaGAAGAACAGTGAGACTCCAGGAACTCTGCATAGCCATGATCAG +
Preference number: 5 (lower is better)
Translates to: AQEPSTEALLGLAGA*KNSETPGTLHSHDQ
Trigger: CTGATCATGGCTATGCAGAGTTCCTGGAGTCTCACTGTTCTTCCAGGCCCCAGCCAGCCCCAGAAGAGCTTCTGTGGACGGCTCCTGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 90 bp TGGTCGAAGTACTCGGGCTCCACTGTTGTCCCCATCTTTAGAGCATaGGCGACAGACGGAGGGAGCATCTGCGAGAGCAGCCTCTCTGTC +
Preference number: 5 (lower is better)
Translates to: WSKYSGSTVVPIFRA*ATDGGSICESSLSV
Trigger: GACAGAGAGGCTGCTCTCGCAGATGCTCCCTCCGTCTGTCGCCCATGCTCTAAAGATGGGGACAACAGTGGAGCCCGAGTACTTCGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp CTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGACACTGTGGAGCTGCTaGCAAACCTCTGTGGCCCCC +
Preference number: 5 (lower is better)
Translates to: LGKTPTAHTTHGWQTARETLWSC*QTSVAP
Trigger: GGGGGCCACAGAGGTTTGCAAGCAGCTCCACAGTGT...CTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp GCTGGATGTGTATGGCATGTCCCTGTGTGGTGTCCCCACCGGTGGCCTGTTTATGCGTGCCGATTTCCATaGCGCCGAGGGAGACCAGAA +
Preference number: 5 (lower is better)
Translates to: AGCVWHVPVWCPHRWPVYACRFP*RRGRPE
Trigger: TTCTGGTCTCCCTCGGCGCAATGGAAATCGGCACGC...ATAAACAGGCCACCGGTGGGGACACCACACAGGGACATGCCATACACATCCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
CDS-3UTR CAA 90 bp CTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGGCGTGCCGATTTCCATaGCGCCGAGGGAGACCAGAA +
Preference number: 5 (lower is better)
Translates to: LGKTPTAHTTHGWQTAREACRFP*RRGRPE
Trigger: TTCTGGTCTCCCTCGGCGCAATGGAAATCGGCACGC...CTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 90 bp GCAGCAGGGTGGTCTGCTCCAGGCCTCCAAGCAGCGCCGAGTGCATaGACAGAACCACAATTTTCAGACCATGAACACTGTGGAGCTGCT +
Preference number: 5 (lower is better)
Translates to: AAGWSAPGLQAAPSA*TEPQFSDHEHCGAA
Trigger: AGCAGCTCCACAGTGTTCATGGTCTGAAAATTGTGGTTCTGTGCATGCACTCGGCGCTGCTTGGAGGCCTGGAGCAGACCACCCTGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 90 bp CTCTCTGTCTTCCGCCTCTCCAGTTCCAGCTCCTCAGTCCGCTCCTaGACCAGATCTTCCAGGCTTTCGGAATACTTCTCCAGCATCCGC +
Preference number: 5 (lower is better)
Translates to: LSVFRLSSSSSSVRS*TRSSRLSEYFSSIR
Trigger: GCGGATGCTGGAGAAGTATTCCGAAAGCCTGGAAGATCTGGTCCAGGAGCGGACTGAGGAGCTGGAACTGGAGAGGCGGAAGACAGAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 90 bp CAGCCTCCCCTGATTTTCTGGGCTCAGCCAGTCCCTGGCGTGCTTTaGCAAAGCCAGTCCGGATTTCTTGGTTTATGCGGTCCTGCCATG +
Preference number: 5 (lower is better)
Translates to: QPPLIFWAQPVPGVL*QSQSGFLGLCGPAM
Trigger: CATGGCAGGACCGCATAAACCAAGAAATCCGGACTGGCTTTGCCAAAGCACGCCAGGGACTGGCTGAGCCCAGAAAATCAGGGGAGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp TTCCTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCACACTGTGGAGCTGCTaGCAAACCTCTGTGGCCCCC +
Preference number: 5 (lower is better)
Translates to: FLTGGKDTPGVTREDTNCTLWSC*QTSVAP
Trigger: GGGGGCCACAGAGGTTTGCAAGCAGCTCCACAGTGT...GCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp CCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCTATGCTCTGGCTCCAAGTaGGCAGTTGCCCCTCCACTC +
Preference number: 5 (lower is better)
Translates to: PTAHTTHGWQTARELTFLCSGSK*AVAPPL
Trigger: GAGTGGAGGGGCAACTGCCAACTTGGAGCCAGAGCA...TAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTTGCTCTGGCTCCAAGTaGGCAGTTGCCCCTCCACTC +
Preference number: 5 (lower is better)
Translates to: DTNCSYHSWVADSQGADICSGSK*AVAPPL
Trigger: GAGTGGAGGGGCAACTGCCAACTTGGAGCCAGAGCA...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp AGGGAGCTGACATTCCTAGCAGAGCAGGGGTGGTGGGGGCATCTTGACTGCCTTCATGGGTCTCCAGGCTaGATAGACAGAGGTGTAGGC +
Preference number: 5 (lower is better)
Translates to: RELTFLAEQGWWGHLDCLHGSPG*IDRGVG
Trigger: GCCTACACCTCTGTCTATCAAGCCTGGAGACCCATG...AAGGCAGTCAAGATGCCCCCACCACCCCTGCTCTGCTAGGAATGTCAGCTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 90 bp ACCCCAGGGCCCACAAAGAGGCCCAGGAAGGCAGTAACATTCTCATaGCGCATCTCCCGCAACTTTCTCAGGAAGCTAAGGCTACTTGGC +
Preference number: 5 (lower is better)
Translates to: TPGPTKRPRKAVTFS*RISRNFLRKLRLLG
Trigger: GCCAAGTAGCCTTAGCTTCCTGAGAAAGTTGCGGGAGATGCGGCATGAGAATGTTACTGCCTTCCTGGGCCTCTTTGTGGGCCCTGGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 90 bp GGCATGGGCCAACAGGATGACGGCATCATAGATAGTTCCAAAGAGTaGGGACACCTGCTCTGGCTCCAAGTTGGCAGTTGCCCCTCCACT +
Preference number: 5 (lower is better)
Translates to: GMGQQDDGIIDSSKE*GHLLWLQVGSCPST
Trigger: AGTGGAGGGGCAACTGCCAACTTGGAGCCAGAGCAGGTGTCCCCACTCTTTGGAACTATCTATGATGCCGTCATCCTGTTGGCCCATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCAGCAGCCACTATGTTCTaGTGGGCCACGAATGTGGCC +
Preference number: 5 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSAATMF*WATNVA
Trigger: GGCCACATTCGTGGCCCACAAGAACATAGTGGCTGC...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp ACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCATACGCGTGCCGATTTCCATaGCGCCGAGGGAGACCAGAA +
Preference number: 5 (lower is better)
Translates to: TGGKDTPGVTREDTNCSYACRFP*RRGRPE
Trigger: TTCTGGTCTCCCTCGGCGCAATGGAAATCGGCACGC...GTATGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp AGGGAACTCTGTTGCACCCCAAATGGTGGCTCAGCCAGGCTGTGGAGCAGTCACGGCCTGGACAGTGCTTaGACTGACATGGATCCTGTA +
Preference number: 5 (lower is better)
Translates to: RELCCTPNGGSARLWSSHGLDSA*TDMDPV
Trigger: TACAGGATCCATGTCAGTCAAAGCACTGTCCAGGCC...GTGACTGCTCCACAGCCTGGCTGAGCCACCATTTGGGGTGCAACAGAGTTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205350.2
CDS-3UTR CAA 90 bp CTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCATGGGTCTCCAGGCTaGATAGACAGAGGTGTAGGC +
Preference number: 5 (lower is better)
Translates to: LGKTPTAHTTHGWQTAREHGSPG*IDRGVG
Trigger: GCCTACACCTCTGTCTATCAAGCCTGGAGACCCATG...CTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 90 bp TCTCAGGAAGCTAAGGCTACTTGGCCGAAGATCAGGAGCCACGCCTaGTTCAAACTTCTTCAGCCATACCCACTCTCCCTGGTACAGGGC +
Preference number: 5 (lower is better)
Translates to: SQEAKATWPKIRSHA*FKLLQPYPLSLVQG
Trigger: GCCCTGTACCAGGGAGAGTGGGTATGGCTGAAGAAGTTTGAAGCAGGCGTGGCTCCTGATCTTCGGCCAAGTAGCCTTAGCTTCCTGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 90 bp CGTGCTTTGGCAAAGCCAGTCCGGATTTCTTGGTTTATGCGGTCCTaGCATGGGTCTCCAGGCTTGATAGACAGAGGTGTAGGCAGGGGT +
Preference number: 5 (lower is better)
Translates to: RALAKPVRISWFMRS*HGSPGLIDRGVGRG
Trigger: ACCCCTGCCTACACCTCTGTCTATCAAGCCTGGAGACCCATGGCAGGACCGCATAAACCAAGAAATCCGGACTGGCTTTGCCAAAGCACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 90 bp GGCTTTCCCAGAGGCTGCACCTGCCATGTGCTTGTGTCCAGAATGTaGGTAGGAACCAACTGGCTTCCTTCACCATCTGTGTCCAGGATG +
Preference number: 5 (lower is better)
Translates to: GFPRGCTCHVLVSRM*VGTNWLPSPSVSRM
Trigger: CATCCTGGACACAGATGGTGAAGGAAGCCAGTTGGTTCCTACCCACATTCTGGACACAAGCACATGGCAGGTGCAGCCTCTGGGAAAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 90 bp TCAGCCAGTCCCTGGCGTGCTTTGGCAAAGCCAGTCCGGATTTCTTaGTTTATGCGGTCCTGCCATGGGTCTCCAGGCTTGATAGACAGA +
Preference number: 5 (lower is better)
Translates to: SASPWRALAKPVRIS*FMRSCHGSPGLIDR
Trigger: TCTGTCTATCAAGCCTGGAGACCCATGGCAGGACCGCATAAACCAAGAAATCCGGACTGGCTTTGCCAAAGCACGCCAGGGACTGGCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp TTCCTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCCCTGTGGGGAGGACCTaGAAATCCAACTGTGAGCCT +
Preference number: 5 (lower is better)
Translates to: FLTGGKDTPGVTREDTNCPVGRT*KSNCEP
Trigger: AGGCTCACAGTTGGATTTCAAGGTCCTCCCCACAGG...GCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp CCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCTACATCCACCACACTTCTaGACTCACTGCCGCTGTCCA +
Preference number: 5 (lower is better)
Translates to: PTAHTTHGWQTARELTFLHPPHF*THCRCP
Trigger: TGGACAGCGGCAGTGAGTCAAGAAGTGTGGTGGATG...TAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp ACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCATCCACCACACTTCTaGACTCACTGCCGCTGTCCA +
Preference number: 5 (lower is better)
Translates to: TPTAHTTHGWQTARELTFHPPHF*THCRCP
Trigger: TGGACAGCGGCAGTGAGTCAAGAAGTGTGGTGGATG...GAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS TCA 90 bp CAAAATACCACAGAGAGGACTGATATGGAAGAGACAGTCTTCAGATaGCTGACAGTGAGTCTCCACGGGCCCTGGCAGGGCAGGCAGGTC +
Preference number: 5 (lower is better)
Translates to: QNTTERTDMEETVFR*LTVSLHGPWQGRQV
Trigger: GACCTGCCTGCCCTGCCAGGGCCCGTGGAGACTCACTGTCAGTCATCTGAAGACTGTCTCTTCCATATCAGTCCTCTCTGTGGTATTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS TCA 90 bp CCAAGCAGCGCCGAGTGCATGCACAGAACCACAATTTTCAGACCATaGACACTGTGGAGCTGCTTGCAAACCTCTGTGGCCCCCTTCTCT +
Preference number: 5 (lower is better)
Translates to: PSSAECMHRTTIFRP*TLWSCLQTSVAPFS
Trigger: AGAGAAGGGGGCCACAGAGGTTTGCAAGCAGCTCCACAGTGTTCATGGTCTGAAAATTGTGGTTCTGTGCATGCACTCGGCGCTGCTTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 90 bp GATGACGGCATCATAGATAGTTCCAAAGAGTGGGGACACCTGCTCTaGCTCCAAGTTGGCAGTTGCCCCTCCACTCATCTCGGTAGCAGT +
Preference number: 5 (lower is better)
Translates to: DDGIIDSSKEWGHLL*LQVGSCPSTHLGSS
Trigger: ACTGCTACCGAGATGAGTGGAGGGGCAACTGCCAACTTGGAGCCAGAGCAGGTGTCCCCACTCTTTGGAACTATCTATGATGCCGTCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 90 bp CTCATGCCGCATCTCCCGCAACTTTCTCAGGAAGCTAAGGCTACTTaGCCGAAGATCAGGAGCCACGCCTGCTTCAAACTTCTTCAGCCA +
Preference number: 5 (lower is better)
Translates to: LMPHLPQLSQEAKAT*PKIRSHACFKLLQP
Trigger: TGGCTGAAGAAGTTTGAAGCAGGCGTGGCTCCTGATCTTCGGCCAAGTAGCCTTAGCTTCCTGAGAAAGTTGCGGGAGATGCGGCATGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 90 bp TTTGGCAAAGCCAGTCCGGATTTCTTGGTTTATGCGGTCCTGCCATaGGTCTCCAGGCTTGATAGACAGAGGTGTAGGCAGGGGTCTGCA +
Preference number: 5 (lower is better)
Translates to: FGKASPDFLVYAVLP*VSRLDRQRCRQGSA
Trigger: TGCAGACCCCTGCCTACACCTCTGTCTATCAAGCCTGGAGACCCATGGCAGGACCGCATAAACCAAGAAATCCGGACTGGCTTTGCCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp CCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAAACAGTAAGGAGGCCTaGAAGGTCCAGTCTAGCCTC +
Preference number: 5 (lower is better)
Translates to: PTAHTTHGWQTARELTFLNSKEA*KVQSSL
Trigger: GAGGCTAGACTGGACCTTCAAGGCCTCCTTACTGTT...TAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp TTCCTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCCTGAAAACATCACCTTaGAAGGTGGCCTTCCCAGGC +
Preference number: 5 (lower is better)
Translates to: FLTGGKDTPGVTREDTNCLKTSP*KVAFPG
Trigger: GCCTGGGAAGGCCACCTTCAAAGGTGATGTTTTCAG...GCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp CCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTCCTAAGATCTGGTCCAAGCTaGGCCTGTCATCTGGAGCTT +
Preference number: 5 (lower is better)
Translates to: PTAHTTHGWQTARELTFLRSGPS*ACHLEL
Trigger: AAGCTCCAGATGACAGGCCAAGCTTGGACCAGATCT...TAGGAATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTAGATCTGGTCCAAGCTaGGCCTGTCATCTGGAGCTT +
Preference number: 5 (lower is better)
Translates to: DTNCSYHSWVADSQGADIRSGPS*ACHLEL
Trigger: AAGCTCCAGATGACAGGCCAAGCTTGGACCAGATCT...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCAACTCGGGCTCCACTGTaGTCCCCATCTTTAGAGCAT +
Preference number: 5 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSTRAPL*SPSLEH
Trigger: ATGCTCTAAAGATGGGGACAACAGTGGAGCCCGAGT...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp ACTAGGGAAGACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGGCCTGGACAGTGCTTaGACTGACATGGATCCTGTA +
Preference number: 5 (lower is better)
Translates to: TREDTNCSYHSWVADSQGGLDSA*TDMDPV
Trigger: TACAGGATCCATGTCAGTCAAAGCACTGTCCAGGCC...TCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTCTTCCCTAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS TCA 90 bp GCAGATACCGCAAACCTCGGATCAGATCCAACAGTAAGGAGGCCTTaGAGGTCCAGTCTAGCCTCAGGTTCTCATTCTGCAGCAGGTCCT +
Preference number: 5 (lower is better)
Translates to: ADTANLGSDPTVRRP*RSSLASGSHSAAGP
Trigger: AGGACCTGCTGCAGAATGAGAACCTGAGGCTAGACTGGACCTTCAAGGCCTCCTTACTGTTGGATCTGATCCGAGGTTTGCGGTATCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp ACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCATACGGCCTGGACAGTGCTTaGACTGACATGGATCCTGTA +
Preference number: 5 (lower is better)
Translates to: TGGKDTPGVTREDTNCSYGLDSA*TDMDPV
Trigger: TACAGGATCCATGTCAGTCAAAGCACTGTCCAGGCC...GTATGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 90 bp TGCACCTGCCATGTGCTTGTGTCCAGAATGTGGGTAGGAACCAACTaGCTTCCTTCACCATCTGTGTCCAGGATGACATATTGGGCTAGC +
Preference number: 5 (lower is better)
Translates to: CTCHVLVSRMWVGTN*LPSPSVSRMTYWAS
Trigger: GCTAGCCCAATATGTCATCCTGGACACAGATGGTGAAGGAAGCCAGTTGGTTCCTACCCACATTCTGGACACAAGCACATGGCAGGTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp CTGACAGGAGGCAAGGACACCCCTGGAGTTACTAGGGAAGACACCAACTGCTCAGTCTTCTTGCCTTGGTaGATGCTTTTGAACTGTGTG +
Preference number: 5 (lower is better)
Translates to: LTGGKDTPGVTREDTNCSVFLPW*MLLNCV
Trigger: CACACAGTTCAAAAGCATCAACCAAGGCAAGAAGAC...TGAGCAGTTGGTGTCTTCCCTAGTAACTCCAGGGGTGTCCTTGCCTCCTGTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS-3UTR CAA 90 bp GACACCAACTGCTCATACCACTCATGGGTGGCAGACAGCCAGGGAGCTGACATTGTCTTCTTGCCTTGGTaGATGCTTTTGAACTGTGTG +
Preference number: 5 (lower is better)
Translates to: DTNCSYHSWVADSQGADIVFLPW*MLLNCV
Trigger: CACACAGTTCAAAAGCATCAACCAAGGCAAGAAGAC...AATGTCAGCTCCCTGGCTGTCTGCCACCCATGAGTGGTATGAGCAGTTGGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS TCA 72 bp GTGGCCTCCTCCGGCTGGGGGTCCGCTGGAGGAAGGTaGGCTCCTGAGATGTCAGCAGGATCCGATGGGGGC +
Preference number: 6 (lower is better)
Translates to: VASSGWGSAGGR*APEMSAGSDGG
Trigger: GCCCCCATCGGATCCTGCTGACATCTCAGGAGCTCACCTTCCTCCAGCGGACCCCCAGCCGGAGGAGGCCAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 72 bp CCTCTGGAGCTTCACAGGCCCAGGAGAAGAGGGACTTaGCCCAGCCTTGGGCCAGCAGGGCTGCTGCTGAGC +
Preference number: 6 (lower is better)
Translates to: PLELHRPRRRGT*PSLGPAGLLLS
Trigger: GCTCAGCAGCAGCCCTGCTGGCCCAAGGCTGGGGCAAGTCCCTCTTCTCCTGGGCCTGTGAAGCTCCAGAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 72 bp CTCCAGGCTGCCACGGGCACAGTGCTCCAGCACCATTaGACTGACCCCAGGGCCCACAAAGAGGCCCAGGAA +
Preference number: 6 (lower is better)
Translates to: LQAATGTVLQHH*TDPRAHKEAQE
Trigger: TTCCTGGGCCTCTTTGTGGGCCCTGGGGTCAGTGCAATGGTGCTGGAGCACTGTGCCCGTGGCAGCCTGGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 72 bp CGGGCCCTGGCAGGGCAGGCAGGTCTTCCAGTGTGGTaGTGTCCAGTTCTGGCCTTCAAAGTGACAGCCCTG +
Preference number: 6 (lower is better)
Translates to: RALAGQAGLPVW*CPVLAFKVTAL
Trigger: CAGGGCTGTCACTTTGAAGGCCAGAACTGGACAGCACCACACTGGAAGACCTGCCTGCCCTGCCAGGGCCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CAA 90 bp GGTACAGGGCCACGTTGGTGTGCTCCAGGAAGGCTGGTAGGCTCCTaGCTGACCCCTGGGTCACCGACCGTGGACTTCCACCATCCACCA +
Preference number: 6 (lower is better)
Translates to: GTGPRWCAPGRLVGS*LTPGSPTVDFHHPP
Trigger: TGGTGGATGGTGGAAGTCCACGGTCGGTGACCCAGGGGTCAGCAAGGAGCCTACCAGCCTTCCTGGAGCACACCAACGTGGCCCTGTACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS TCA 72 bp GCCAGCTGCTGGGCTGTGGTTACCCAGATGTCCTGGTaGGAGGACACAATGGCCCAGCGAGCCCAGCCAAAG +
Preference number: 6 (lower is better)
Translates to: ASCWAVVTQMSW*EDTMAQRAQPK
Trigger: CTTTGGCTGGGCTCGCTGGGCCATTGTGTCCTCTCACCAGGACATCTGGGTAACCACAGCCCAGCAGCTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 72 bp GTGGACTTCCACCATCCACCACACTTCTTGACTCACTaGCGCTGTCCACATGTGGCCTCCTCCGGCTGGGGG +
Preference number: 6 (lower is better)
Translates to: VDFHHPPHFLTH*RCPHVASSGWG
Trigger: CCCCCAGCCGGAGGAGGCCACATGTGGACAGCGGCAGTGAGTCAAGAAGTGTGGTGGATGGTGGAAGTCCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 72 bp AGGATGTCCAGGGCCAGGTTGGCGATCTCAGCAGCGTaGCGATTTCCATTGCGCCGAGGGAGACCAGAAGCC +
Preference number: 6 (lower is better)
Translates to: RMSRARLAISAA*RFPLRRGRPEA
Trigger: GGCTTCTGGTCTCCCTCGGCGCAATGGAAATCGGCACGCTGCTGAGATCGCCAACCTGGCCCTGGACATCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098274.5
ENSMUST00000205350.2
ENSMUST00000206435.2
CDS CCA 72 bp TGCTCCAGGAAGGCTGGTAGGCTCCTTGCTGACCCCTaGGTCACCGACCGTGGACTTCCACCATCCACCACA +
Preference number: 6 (lower is better)
Translates to: CSRKAGRLLADP*VTDRGLPPSTT
Trigger: TGTGGTGGATGGTGGAAGTCCACGGTCGGTGACCCAGGGGTCAGCAAGGAGCCTACCAGCCTTCCTGGAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS TCA 72 bp TGGGGTCACAGTCCCAGGGACCCAGCACCCCAAGGGTaGAGGTCTCTCTTGCCCATGCTAACAGGGAAAGGG +
Preference number: 6 (lower is better)
Translates to: WGHSPRDPAPQG*RSLLPMLTGKG
Trigger: CCCTTTCCCTGTTAGCATGGGCAAGAGAGACCTTCACCCTTGGGGTGCTGGGTCCCTGGGACTGTGACCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS TCA 72 bp AAGAGGTCACCAGTCCGATGGGCAGCCCATGAGTCCTaGAAGCAGTGGCCAGCTGCTGGGCTGTGGTTACCC +
Preference number: 6 (lower is better)
Translates to: KRSPVRWAAHES*KQWPAAGLWLP
Trigger: GGGTAACCACAGCCCAGCAGCTGGCCACTGCTTTCAGGACTCATGGGCTGCCCATCGGACTGGTGACCTCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS TCA 72 bp TCAGAGTCAGGAGGCTGCCCAGGGGCTGCACACCTCTaGTGCATAGTGTGTTGGGGTCGAACCAGCAGCTGG +
Preference number: 6 (lower is better)
Translates to: SESGGCPGAAHL*CIVCWGRTSSW
Trigger: CCAGCTGCTGGTTCGACCCCAACACACTATGCATCAGAGGTGTGCAGCCCCTGGGCAGCCTCCTGACTCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 72 bp TCAGCCATACCCACTCTCCCTGGTACAGGGCCACGTTaGTGTGCTCCAGGAAGGCTGGTAGGCTCCTTGCTG +
Preference number: 6 (lower is better)
Translates to: SAIPTLPGTGPR*CAPGRLVGSLL
Trigger: CAGCAAGGAGCCTACCAGCCTTCCTGGAGCACACCAACGTGGCCCTGTACCAGGGAGAGTGGGTATGGCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 72 bp CAGGCTATCGTCAGAGTCAGGAGGCTGCCCAGGGGCTaGACACCTCTGATGCATAGTGTGTTGGGGTCGAAC +
Preference number: 6 (lower is better)
Translates to: QAIVRVRRLPRG*TPLMHSVLGSN
Trigger: GTTCGACCCCAACACACTATGCATCAGAGGTGTGCAGCCCCTGGGCAGCCTCCTGACTCTGACGATAGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 72 bp GTGAGACCCACAACACCTGCCACACAGGGTCCTGAATaGAGACCTGCCCTGACACGGATGGGTACATCGGGT +
Preference number: 6 (lower is better)
Translates to: VRPTTPATQGPE*RPALTRMGTSG
Trigger: ACCCGATGTACCCATCCGTGTCAGGGCAGGTCTGCATTCAGGACCCTGTGTGGCAGGTGTTGTGGGTCTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098274.5
ENSMUST00000205350.2
ENSMUST00000206435.2
CDS CCA 72 bp CCGTCCACAGAAGCTCTTCTGGGGCTGGCTGGGGCCTaGAAGAACAGTGAGACTCCAGGAACTCTGCATAGC +
Preference number: 6 (lower is better)
Translates to: PSTEALLGLAGA*KNSETPGTLHS
Trigger: GCTATGCAGAGTTCCTGGAGTCTCACTGTTCTTCCAGGCCCCAGCCAGCCCCAGAAGAGCTTCTGTGGACGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 72 bp TACTCGGGCTCCACTGTTGTCCCCATCTTTAGAGCATaGGCGACAGACGGAGGGAGCATCTGCGAGAGCAGC +
Preference number: 6 (lower is better)
Translates to: YSGSTVVPIFRA*ATDGGSICESS
Trigger: GCTGCTCTCGCAGATGCTCCCTCCGTCTGTCGCCCATGCTCTAAAGATGGGGACAACAGTGGAGCCCGAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CAA 72 bp TTCAGCCATACCCACTCTCCCTGGTACAGGGCCACGTaGGTGTGCTCCAGGAAGGCTGGTAGGCTCCTTGCT +
Preference number: 6 (lower is better)
Translates to: FSHTHSPWYRAT*VCSRKAGRLLA
Trigger: AGCAAGGAGCCTACCAGCCTTCCTGGAGCACACCAACGTGGCCCTGTACCAGGGAGAGTGGGTATGGCTGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CAA 90 bp CCAGCCTCCCCTGATTTTCTGGGCTCAGCCAGTCCCTGGCGTGCTTaGGCAAAGCCAGTCCGGATTTCTTGGTTTATGCGGTCCTGCCAT +
Preference number: 6 (lower is better)
Translates to: PASPDFLGSASPWRA*AKPVRISWFMRSCH
Trigger: ATGGCAGGACCGCATAAACCAAGAAATCCGGACTGGCTTTGCCAAAGCACGCCAGGGACTGGCTGAGCCCAGAAAATCAGGGGAGGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS TCA 72 bp GGGCATGAGGAGTGTCACAGCCTGTGGGGAGGACCTTaGAATCCAACTGTGAGCCTGGCAGCAGTGAGGCAT +
Preference number: 6 (lower is better)
Translates to: GHEECHSLWGGP*NPTVSLAAVRH
Trigger: ATGCCTCACTGCTGCCAGGCTCACAGTTGGATTTCAAGGTCCTCCCCACAGGCTGTGACACTCCTCATGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS TCA 72 bp CATGGTGAGACCCACAACACCTGCCACACAGGGTCCTaGATGCAGACCTGCCCTGACACGGATGGGTACATC +
Preference number: 6 (lower is better)
Translates to: HGETHNTCHTGS*MQTCPDTDGYI
Trigger: GATGTACCCATCCGTGTCAGGGCAGGTCTGCATTCAGGACCCTGTGTGGCAGGTGTTGTGGGTCTCACCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098274.5
ENSMUST00000205350.2
ENSMUST00000206435.2
CDS GCA 72 bp ATCTTTAGAGCATGGGCGACAGACGGAGGGAGCATCTaGGAGAGCAGCCTCTCTGTCTTCCGCCTCTCCAGT +
Preference number: 6 (lower is better)
Translates to: IFRAWATDGGSI*ESSLSVFRLSS
Trigger: ACTGGAGAGGCGGAAGACAGAGAGGCTGCTCTCGCAGATGCTCCCTCCGTCTGTCGCCCATGCTCTAAAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 72 bp CCCTGGCGTGCTTTGGCAAAGCCAGTCCGGATTTCTTaGTTTATGCGGTCCTGCCATGGGTCTCCAGGCTTG +
Preference number: 6 (lower is better)
Translates to: PWRALAKPVRIS*FMRSCHGSPGL
Trigger: CAAGCCTGGAGACCCATGGCAGGACCGCATAAACCAAGAAATCCGGACTGGCTTTGCCAAAGCACGCCAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CAA 72 bp GTTCCAAAGAGTGGGGACACCTGCTCTGGCTCCAAGTaGGCAGTTGCCCCTCCACTCATCTCGGTAGCAGTG +
Preference number: 6 (lower is better)
Translates to: VPKSGDTCSGSK*AVAPPLISVAV
Trigger: CACTGCTACCGAGATGAGTGGAGGGGCAACTGCCAACTTGGAGCCAGAGCAGGTGTCCCCACTCTTTGGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CAA 90 bp CTCAGCCAGTCCCTGGCGTGCTTTGGCAAAGCCAGTCCGGATTTCTaGGTTTATGCGGTCCTGCCATGGGTCTCCAGGCTTGATAGACAG +
Preference number: 6 (lower is better)
Translates to: LSQSLACFGKASPDF*VYAVLPWVSRLDRQ
Trigger: CTGTCTATCAAGCCTGGAGACCCATGGCAGGACCGCATAAACCAAGAAATCCGGACTGGCTTTGCCAAAGCACGCCAGGGACTGGCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 72 bp GCTCTCAGGACTGGACTCCAGACTGACAGTGAGTACTaGGTCATAGGCTTCCTGAAGGGGCCCATGGTCATC +
Preference number: 6 (lower is better)
Translates to: ALRTGLQTDSEY*VIGFLKGPMVI
Trigger: GATGACCATGGGCCCCTTCAGGAAGCCTATGACGCAGTACTCACTGTCAGTCTGGAGTCCAGTCCTGAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 72 bp GGGTACATCGGGTGCATGCCTCATCCGAAAGTTGCCTaGATAGCTAAGGATGTCCAGGGCCAGGTTGGCGAT +
Preference number: 6 (lower is better)
Translates to: GYIGCMPHPKVA*IAKDVQGQVGD
Trigger: ATCGCCAACCTGGCCCTGGACATCCTTAGCTATGCAGGCAACTTTCGGATGAGGCATGCACCCGATGTACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098274.5
ENSMUST00000205350.2
ENSMUST00000206435.2
CDS CCA 72 bp GACCATGAACACTGTGGAGCTGCTTGCAAACCTCTGTaGCCCCCTTCTCTCCAGGTCCCAAAGAGGTCACCA +
Preference number: 6 (lower is better)
Translates to: DHEHCGAACKPL*PPSLQVPKRSP
Trigger: TGGTGACCTCTTTGGGACCTGGAGAGAAGGGGGCCACAGAGGTTTGCAAGCAGCTCCACAGTGTTCATGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 72 bp CCTGCTTCAAACTTCTTCAGCCATACCCACTCTCCCTaGTACAGGGCCACGTTGGTGTGCTCCAGGAAGGCT +
Preference number: 6 (lower is better)
Translates to: PASNFFSHTHSP*YRATLVCSRKA
Trigger: AGCCTTCCTGGAGCACACCAACGTGGCCCTGTACCAGGGAGAGTGGGTATGGCTGAAGAAGTTTGAAGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 72 bp TTCCGCCTCTCCAGTTCCAGCTCCTCAGTCCGCTCCTaGACCAGATCTTCCAGGCTTTCGGAATACTTCTCC +
Preference number: 6 (lower is better)
Translates to: FRLSSSSSSVRS*TRSSRLSEYFS
Trigger: GGAGAAGTATTCCGAAAGCCTGGAAGATCTGGTCCAGGAGCGGACTGAGGAGCTGGAACTGGAGAGGCGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CAA 72 bp TCCCTGGCGTGCTTTGGCAAAGCCAGTCCGGATTTCTaGGTTTATGCGGTCCTGCCATGGGTCTCCAGGCTT +
Preference number: 6 (lower is better)
Translates to: SLACFGKASPDF*VYAVLPWVSRL
Trigger: AAGCCTGGAGACCCATGGCAGGACCGCATAAACCAAGAAATCCGGACTGGCTTTGCCAAAGCACGCCAGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS TCA 72 bp ACAGAGAGGACTGATATGGAAGAGACAGTCTTCAGATaGCTGACAGTGAGTCTCCACGGGCCCTGGCAGGGC +
Preference number: 6 (lower is better)
Translates to: TERTDMEETVFR*LTVSLHGPWQG
Trigger: GCCCTGCCAGGGCCCGTGGAGACTCACTGTCAGTCATCTGAAGACTGTCTCTTCCATATCAGTCCTCTCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 72 bp GCTAAGGCTACTTGGCCGAAGATCAGGAGCCACGCCTaGTTCAAACTTCTTCAGCCATACCCACTCTCCCTG +
Preference number: 6 (lower is better)
Translates to: AKATWPKIRSHA*FKLLQPYPLSL
Trigger: CAGGGAGAGTGGGTATGGCTGAAGAAGTTTGAAGCAGGCGTGGCTCCTGATCTTCGGCCAAGTAGCCTTAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 72 bp GCCAGTCCGGATTTCTTGGTTTATGCGGTCCTGCCATaGGTCTCCAGGCTTGATAGACAGAGGTGTAGGCAG +
Preference number: 6 (lower is better)
Translates to: ASPDFLVYAVLP*VSRLDRQRCRQ
Trigger: CTGCCTACACCTCTGTCTATCAAGCCTGGAGACCCATGGCAGGACCGCATAAACCAAGAAATCCGGACTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CAA 72 bp CCTGATTTTCTGGGCTCAGCCAGTCCCTGGCGTGCTTaGGCAAAGCCAGTCCGGATTTCTTGGTTTATGCGG +
Preference number: 6 (lower is better)
Translates to: PDFLGSASPWRA*AKPVRISWFMR
Trigger: CCGCATAAACCAAGAAATCCGGACTGGCTTTGCCAAAGCACGCCAGGGACTGGCTGAGCCCAGAAAATCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 72 bp CCACAATTTTCAGACCATGAACACTGTGGAGCTGCTTaGAAACCTCTGTGGCCCCCTTCTCTCCAGGTCCCA +
Preference number: 6 (lower is better)
Translates to: PQFSDHEHCGAA*KPLWPPSLQVP
Trigger: TGGGACCTGGAGAGAAGGGGGCCACAGAGGTTTGCAAGCAGCTCCACAGTGTTCATGGTCTGAAAATTGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 72 bp TGGTCTGCTCCAGGCCTCCAAGCAGCGCCGAGTGCATaGACAGAACCACAATTTTCAGACCATGAACACTGT +
Preference number: 6 (lower is better)
Translates to: WSAPGLQAAPSA*TEPQFSDHEHC
Trigger: ACAGTGTTCATGGTCTGAAAATTGTGGTTCTGTGCATGCACTCGGCGCTGCTTGGAGGCCTGGAGCAGACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 72 bp CCAGGAAAGTGTATAGGCTTTCCCAGAGGCTGCACCTaGCATGTGCTTGTGTCCAGAATGTGGGTAGGAACC +
Preference number: 6 (lower is better)
Translates to: PGKCIGFPRGCT*HVLVSRMWVGT
Trigger: GGTTCCTACCCACATTCTGGACACAAGCACATGGCAGGTGCAGCCTCTGGGAAAGCCTATACACTTTCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 72 bp CCCACAAAGAGGCCCAGGAAGGCAGTAACATTCTCATaGCGCATCTCCCGCAACTTTCTCAGGAAGCTAAGG +
Preference number: 6 (lower is better)
Translates to: PTKRPRKAVTFS*RISRNFLRKLR
Trigger: CCTTAGCTTCCTGAGAAAGTTGCGGGAGATGCGGCATGAGAATGTTACTGCCTTCCTGGGCCTCTTTGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 72 bp CTGATTTTCTGGGCTCAGCCAGTCCCTGGCGTGCTTTaGCAAAGCCAGTCCGGATTTCTTGGTTTATGCGGT +
Preference number: 6 (lower is better)
Translates to: LIFWAQPVPGVL*QSQSGFLGLCG
Trigger: ACCGCATAAACCAAGAAATCCGGACTGGCTTTGCCAAAGCACGCCAGGGACTGGCTGAGCCCAGAAAATCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CAA 72 bp TCTTGGTTTATGCGGTCCTGCCATGGGTCTCCAGGCTaGATAGACAGAGGTGTAGGCAGGGGTCTGCAGAAT +
Preference number: 6 (lower is better)
Translates to: SWFMRSCHGSPG*IDRGVGRGLQN
Trigger: ATTCTGCAGACCCCTGCCTACACCTCTGTCTATCAAGCCTGGAGACCCATGGCAGGACCGCATAAACCAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CAA 90 bp TGCAGATACCGCAAACCTCGGATCAGATCCAACAGTAAGGAGGCCTaGAAGGTCCAGTCTAGCCTCAGGTTCTCATTCTGCAGCAGGTCC +
Preference number: 6 (lower is better)
Translates to: CRYRKPRIRSNSKEA*KVQSSLRFSFCSRS
Trigger: GGACCTGCTGCAGAATGAGAACCTGAGGCTAGACTGGACCTTCAAGGCCTCCTTACTGTTGGATCTGATCCGAGGTTTGCGGTATCTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS TCA 72 bp GCCGAGTGCATGCACAGAACCACAATTTTCAGACCATaGACACTGTGGAGCTGCTTGCAAACCTCTGTGGCC +
Preference number: 6 (lower is better)
Translates to: AECMHRTTIFRP*TLWSCLQTSVA
Trigger: GGCCACAGAGGTTTGCAAGCAGCTCCACAGTGTTCATGGTCTGAAAATTGTGGTTCTGTGCATGCACTCGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS GCA 72 bp GCAAAGCCAGTCCGGATTTCTTGGTTTATGCGGTCCTaGCATGGGTCTCCAGGCTTGATAGACAGAGGTGTA +
Preference number: 6 (lower is better)
Translates to: AKPVRISWFMRS*HGSPGLIDRGV
Trigger: TACACCTCTGTCTATCAAGCCTGGAGACCCATGGCAGGACCGCATAAACCAAGAAATCCGGACTGGCTTTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 72 bp ATCATAGATAGTTCCAAAGAGTGGGGACACCTGCTCTaGCTCCAAGTTGGCAGTTGCCCCTCCACTCATCTC +
Preference number: 6 (lower is better)
Translates to: IIDSSKEWGHLL*LQVGSCPSTHL
Trigger: GAGATGAGTGGAGGGGCAACTGCCAACTTGGAGCCAGAGCAGGTGTCCCCACTCTTTGGAACTATCTATGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 72 bp CATCTCCCGCAACTTTCTCAGGAAGCTAAGGCTACTTaGCCGAAGATCAGGAGCCACGCCTGCTTCAAACTT +
Preference number: 6 (lower is better)
Translates to: HLPQLSQEAKAT*PKIRSHACFKL
Trigger: AAGTTTGAAGCAGGCGTGGCTCCTGATCTTCGGCCAAGTAGCCTTAGCTTCCTGAGAAAGTTGCGGGAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CAA 72 bp CGCAAACCTCGGATCAGATCCAACAGTAAGGAGGCCTaGAAGGTCCAGTCTAGCCTCAGGTTCTCATTCTGC +
Preference number: 6 (lower is better)
Translates to: RKPRIRSNSKEA*KVQSSLRFSFC
Trigger: GCAGAATGAGAACCTGAGGCTAGACTGGACCTTCAAGGCCTCCTTACTGTTGGATCTGATCCGAGGTTTGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS TCA 72 bp GAACCAACTGGCTTCCTTCACCATCTGTGTCCAGGATaGCATATTGGGCTAGCCTTCTGCCTTTCCCATCTG +
Preference number: 6 (lower is better)
Translates to: EPTGFLHHLCPG*HIGLAFCLSHL
Trigger: CAGATGGGAAAGGCAGAAGGCTAGCCCAATATGTCATCCTGGACACAGATGGTGAAGGAAGCCAGTTGGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS TCA 72 bp GCAAACCTCGGATCAGATCCAACAGTAAGGAGGCCTTaGAGGTCCAGTCTAGCCTCAGGTTCTCATTCTGCA +
Preference number: 6 (lower is better)
Translates to: ANLGSDPTVRRP*RSSLASGSHSA
Trigger: TGCAGAATGAGAACCTGAGGCTAGACTGGACCTTCAAGGCCTCCTTACTGTTGGATCTGATCCGAGGTTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 72 bp GCTAGCCTTCTGCCTTTCCCATCTGTTCGGATTCTCTaGCTAAAACCAGCCACATCAAGAGCTCTTACGTGG +
Preference number: 6 (lower is better)
Translates to: ASLLPFPSVRIL*LKPATSRALTW
Trigger: CCACGTAAGAGCTCTTGATGTGGCTGGTTTTAGCCAGAGAATCCGAACAGATGGGAAAGGCAGAAGGCTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 72 bp TGGCTTCCTTCACCATCTGTGTCCAGGATGACATATTaGGCTAGCCTTCTGCCTTTCCCATCTGTTCGGATT +
Preference number: 6 (lower is better)
Translates to: WLPSPSVSRMTY*ASLLPFPSVRI
Trigger: AATCCGAACAGATGGGAAAGGCAGAAGGCTAGCCCAATATGTCATCCTGGACACAGATGGTGAAGGAAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CCA 72 bp CATGTGCTTGTGTCCAGAATGTGGGTAGGAACCAACTaGCTTCCTTCACCATCTGTGTCCAGGATGACATAT +
Preference number: 6 (lower is better)
Translates to: HVLVSRMWVGTN*LPSPSVSRMTY
Trigger: ATATGTCATCCTGGACACAGATGGTGAAGGAAGCCAGTTGGTTCCTACCCACATTCTGGACACAAGCACATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2
CDS CAA 72 bp CCGCAGCATGGAGTCTACAACACTTGTCTTCTTGCCTaGGTTGATGCTTTTGAACTGTGTGTAGATCTGGTC +
Preference number: 6 (lower is better)
Translates to: PQHGVYNTCLLA*VDAFELCVDLV
Trigger: GACCAGATCTACACACAGTTCAAAAGCATCAACCAAGGCAAGAAGACAAGTGTTGTAGACTCCATGCTGCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098274.5
ENSMUST00000206435.2