Pregenerated sensors for GUCA2A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023247Ensembl transcript IDs: ENSMUST00000024015.3
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CTTCTCCAGGTAGCTGTCTCCTCAGCCTCCTCCCCGCTGTGGCAGGGCAATAGAAGTTTGTTAGCCTCGTaGCTTCTAGAAGATAGAGGG | + |
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Preference number: 2 (lower is better) Translates to: LLQVAVSSASSPLWQGNRSLLAS*LLEDRG Trigger: CCCTCTATCTTCTAGAAGTCACGAGGCTAACAAACT...TCTATTGCCCTGCCACAGCGGGGAGGAGGCTGAGGAGACAGCTACCTGGAGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024015.3 |
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| 3UTR TCA 72 bp | TCAGCCTCCTCCCCGCTGTGGCAGGGCAATAGATGCTaGGGGTATGAGTTTGTTAGCCTCGTGACTTCTAGA | + |
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Preference number: 3 (lower is better) Translates to: SASSPLWQGNRC*GYEFVSLVTSR Trigger: TCTAGAAGTCACGAGGCTAACAAACTCATACCCTCAGCATCTATTGCCCTGCCACAGCGGGGAGGAGGCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024015.3 |
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| CDS-3UTR TCA 90 bp | AGCCCTCAGGCAAGGCTTCTCCAGGTAGCTGTCTCCTCAGCCTCCTCCCCGCTGCTCCATCCTGCACAGTaGCCCCTTCTACCAGGACAG | + |
|
Preference number: 4 (lower is better) Translates to: SPQARLLQVAVSSASSPLLHPAQ*PLLPGQ Trigger: CTGTCCTGGTAGAAGGGGTCACTGTGCAGGATGGAG...CAGCGGGGAGGAGGCTGAGGAGACAGCTACCTGGAGAAGCCTTGCCTGAGGGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024015.3 |
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| CDS-3UTR GCA 90 bp | AGCCCTCAGGCAAGGCTTCTCCAGGTAGCTGTCTCCTCAGCCTCCTCCCCGCTGATGGCCTCTAGCCTCTaGAGGATCTCCTCGGCGTTG | + |
|
Preference number: 4 (lower is better) Translates to: SPQARLLQVAVSSASSPLMASSL*RISSAL Trigger: CAACGCCGAGGAGATCCTGCAGAGGCTAGAGGCCAT...CAGCGGGGAGGAGGCTGAGGAGACAGCTACCTGGAGAAGCCTTGCCTGAGGGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024015.3 |
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| CDS-3UTR TCA 90 bp | TCTCCTCAGCCTCCTCCCCGCTGTGGCAGGGCAATAGATGCTGAGGGTATGAGTTGTGGTGCCACGGGCTaGAGAAGCCGGGGAGCAAAC | + |
|
Preference number: 4 (lower is better) Translates to: SPQPPPRCGRAIDAEGMSCGATG*RSRGAN Trigger: GTTTGCTCCCCGGCTTCTTCAGCCCGTGGCACCACA...ACTCATACCCTCAGCATCTATTGCCCTGCCACAGCGGGGAGGAGGCTGAGGAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024015.3 |
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| CDS-3UTR CCA 90 bp | AGCCCTCAGGCAAGGCTTCTCCAGGTAGCTGTCTCCTCAGCCTCCTCCCCGCTGCGGCCTCAGTGCTTCTaGAAGTGCAGAGTGGCTACT | + |
|
Preference number: 4 (lower is better) Translates to: SPQARLLQVAVSSASSPLRPQCF*KCRVAT Trigger: AGTAGCCACTCTGCACTTCCAGAAGCACTGAGGCCG...CAGCGGGGAGGAGGCTGAGGAGACAGCTACCTGGAGAAGCCTTGCCTGAGGGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024015.3 |
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| CDS-3UTR CCA 90 bp | AGCCCTCAGGCAAGGCTTCTCCAGGTAGCTGTCTCCTCAGCCTCCTCCCCGCTGGATCTCACATGTGTTTaGGTCCTGAGCAATGGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: SPQARLLQVAVSSASSPLDLTCV*VLSNGL Trigger: GAGGCCATTGCTCAGGACCCAAACACATGTGAGATC...CAGCGGGGAGGAGGCTGAGGAGACAGCTACCTGGAGAAGCCTTGCCTGAGGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024015.3 |
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| CDS-3UTR GCA 90 bp | TCTCCTCAGCCTCCTCCCCGCTGTGGCAGGGCAATAGATGCTGAGGGTATGAGTGAGAGGTCTCCATCCTaGACAGTGACCCCTTCTACC | + |
|
Preference number: 4 (lower is better) Translates to: SPQPPPRCGRAIDAEGMSERSPS*TVTPST Trigger: GGTAGAAGGGGTCACTGTGCAGGATGGAGACCTCTC...ACTCATACCCTCAGCATCTATTGCCCTGCCACAGCGGGGAGGAGGCTGAGGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024015.3 |
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| CDS-3UTR TCA 90 bp | CCTCCTCCCCGCTGTGGCAGGGCAATAGATGCTGAGGGTATGAGTTTGTTAGCCCATGTGTTTGGGTCCTaGGCAATGGCCTCTAGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: PPPRCGRAIDAEGMSLLAHVFGS*AMASSL Trigger: GAGGCTAGAGGCCATTGCTCAGGACCCAAACACATG...GGCTAACAAACTCATACCCTCAGCATCTATTGCCCTGCCACAGCGGGGAGGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024015.3 |
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| CDS-3UTR CAA 90 bp | CTTCTCCAGGTAGCTGTCTCCTCAGCCTCCTCCCCGCTGTGGCAGGGCAATAGAAGGATCTCCTCGGCGTaGGGTTTCTCGCAGACCGGC | + |
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Preference number: 5 (lower is better) Translates to: LLQVAVSSASSPLWQGNRRISSA*GFSQTG Trigger: GCCGGTCTGCGAGAAACCCAACGCCGAGGAGATCCT...TCTATTGCCCTGCCACAGCGGGGAGGAGGCTGAGGAGACAGCTACCTGGAGAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024015.3 |
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| CDS CCA 90 bp | GGTCCTGAGCAATGGCCTCTAGCCTCTGCAGGATCTCCTCGGCGTTaGGTTTCTCGCAGACCGGCCTCAGTGCTTCTGGAAGTGCAGAGT | + |
|
Preference number: 5 (lower is better) Translates to: GPEQWPLASAGSPRR*VSRRPASVLLEVQS Trigger: ACTCTGCACTTCCAGAAGCACTGAGGCCGGTCTGCGAGAAACCCAACGCCGAGGAGATCCTGCAGAGGCTAGAGGCCATTGCTCAGGACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024015.3 |
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| CDS CCA 90 bp | AGGCAGCGTAGGCACAGATCTCACATGTGTTTGGGTCCTGAGCAATaGCCTCTAGCCTCTGCAGGATCTCCTCGGCGTTGGGTTTCTCGC | + |
|
Preference number: 5 (lower is better) Translates to: RQRRHRSHMCLGPEQ*PLASAGSPRRWVSR Trigger: GCGAGAAACCCAACGCCGAGGAGATCCTGCAGAGGCTAGAGGCCATTGCTCAGGACCCAAACACATGTGAGATCTGTGCCTACGCTGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024015.3 |
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| CDS CAA 72 bp | GCAATGGCCTCTAGCCTCTGCAGGATCTCCTCGGCGTaGGGTTTCTCGCAGACCGGCCTCAGTGCTTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: AMASSLCRISSA*GFSQTGLSASG Trigger: TCCAGAAGCACTGAGGCCGGTCTGCGAGAAACCCAACGCCGAGGAGATCCTGCAGAGGCTAGAGGCCATTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024015.3 |
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| CDS TCA 72 bp | ACTCCAGAGGAAAGGAGAGGTCTCCATCCTGCACAGTaGCCCCTTCTACCAGGACAGCCAAGGCACCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: TPEERRGLHPAQ*PLLPGQPRHPG Trigger: TCCTGGGTGCCTTGGCTGTCCTGGTAGAAGGGGTCACTGTGCAGGATGGAGACCTCTCCTTTCCTCTGGAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024015.3 |
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| CDS CCA 72 bp | AGGCACAGATCTCACATGTGTTTGGGTCCTGAGCAATaGCCTCTAGCCTCTGCAGGATCTCCTCGGCGTTGG | + |
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Preference number: 6 (lower is better) Translates to: RHRSHMCLGPEQ*PLASAGSPRRW Trigger: CCAACGCCGAGGAGATCCTGCAGAGGCTAGAGGCCATTGCTCAGGACCCAAACACATGTGAGATCTGTGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024015.3 |
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| CDS CAA 72 bp | CCGTACAGGCAGCGTAGGCACAGATCTCACATGTGTTaGGGTCCTGAGCAATGGCCTCTAGCCTCTGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: PYRQRRHRSHMC*GPEQWPLASAG Trigger: TCCTGCAGAGGCTAGAGGCCATTGCTCAGGACCCAAACACATGTGAGATCTGTGCCTACGCTGCCTGTACGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024015.3 |
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