RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GTPBP3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000007610

Ensembl transcript IDs: ENSMUST00000007754.13, ENSMUST00000095259.10, ENSMUST00000127741.2, ENSMUST00000150969.8, ENSMUST00000168847.8

Found 279 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTGGATGGGTCCCCACACACCGCAGCCAGCTCGGTCTTCAGGGCCTaGAGGAGGCTGTCCATCCCGGCTCCCGTGTGGCAGGACAGGAGC +
Preference number: 1 (lower is better)
Translates to: VDGSPHTAASSVFRA*RRLSIPAPVWQDRS
Trigger: GCTCCTGTCCTGCCACACGGGAGCCGGGATGGACAGCCTCCTGCAGGCCCTGAAGACCGAGCTGGCTGCGGTGTGTGGGGACCCATCCAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR TCA 90 bp AGCTGGATGAGGAGGCCAGGTCGGAGGCGTCCAGCACCCCCAGAATaGTGTCAGCCTGCTCCAGCCTGTGGCGGGCCCTGCGCACACCCT +
Preference number: 1 (lower is better)
Translates to: SWMRRPGRRRPAPPE*CQPAPACGGPCAHP
Trigger: AGGGTGTGCGCAGGGCCCGCCACAGGCTGGAGCAGGCTGACATCATTCTGGGGGTGCTGGACGCCTCCGACCTGGCCTCCTCATCCAGCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR GCA 90 bp GCGCACACCCTCCTGCTCAACAGCGCCCACGCCTTCCCGGAGCCCTaGAGTGTCGCTCAGCAAGACAGGGAACCCAGCCAAGTCCACGGG +
Preference number: 1 (lower is better)
Translates to: AHTLLLNSAHAFPEP*SVAQQDREPSQVHG
Trigger: CCCGTGGACTTGGCTGGGTTCCCTGTCTTGCTGAGCGACACTGCAGGGCTCCGGGAAGGCGTGGGCGCTGTTGAGCAGGAGGGTGTGCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR GCA 90 bp GAGGCCAGGTCGGAGGCGTCCAGCACCCCCAGAATGATGTCAGCCTaGTCCAGCCTGTGGCGGGCCCTGCGCACACCCTCCTGCTCAACA +
Preference number: 1 (lower is better)
Translates to: EARSEASSTPRMMSA*SSLWRALRTPSCST
Trigger: TGTTGAGCAGGAGGGTGTGCGCAGGGCCCGCCACAGGCTGGAGCAGGCTGACATCATTCTGGGGGTGCTGGACGCCTCCGACCTGGCCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR CCA 90 bp GTGGTACTGGTGCCTGACCCGGGTCAAGAGCGGTGGTCCTGTGGATaGGTCCCCACACACCGCAGCCAGCTCGGTCTTCAGGGCCTGCAG +
Preference number: 1 (lower is better)
Translates to: VVLVPDPGQERWSCG*VPTHRSQLGLQGLQ
Trigger: CTGCAGGCCCTGAAGACCGAGCTGGCTGCGGTGTGTGGGGACCCATCCACAGGACCACCGCTCTTGACCCGGGTCAGGCACCAGTACCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR CCA 90 bp GCAGCCCTGGAGGTGGTACTGGTGCCTGACCCGGGTCAAGAGCGGTaGTCCTGTGGATGGGTCCCCACACACCGCAGCCAGCTCGGTCTT +
Preference number: 1 (lower is better)
Translates to: AALEVVLVPDPGQER*SCGWVPTHRSQLGL
Trigger: AAGACCGAGCTGGCTGCGGTGTGTGGGGACCCATCCACAGGACCACCGCTCTTGACCCGGGTCAGGCACCAGTACCACCTCCAGGGCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR TCA 90 bp AGGAGGCTGTCCATCCCGGCTCCCGTGTGGCAGGACAGGAGCAGGTaGGGAGGCAGGGCTATGTCGCAGGCTGGGGCATTAGCAGACAGC +
Preference number: 1 (lower is better)
Translates to: RRLSIPAPVWQDRSR*GGRAMSQAGALADS
Trigger: GCTGTCTGCTAATGCCCCAGCCTGCGACATAGCCCTGCCTCCTCACCTGCTCCTGTCCTGCCACACGGGAGCCGGGATGGACAGCCTCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR GCA 90 bp CTTGGCTTTGTGCTAGCAGTGGGGTCACTACAGTGTCCAGGAAGCTaGAGCTGGATGAGGAGGCCAGGTCGGAGGCGTCCAGCACCCCCA +
Preference number: 1 (lower is better)
Translates to: LGFVLAVGSLQCPGS*SWMRRPGRRRPAPP
Trigger: TGGGGGTGCTGGACGCCTCCGACCTGGCCTCCTCATCCAGCTGCAGCTTCCTGGACACTGTAGTGACCCCACTGCTAGCACAAAGCCAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR TCA 90 bp AAGATGAGATCCAGGATCTCCTCCGTTCCTCCTCCACCTGTGAGGTaGTTTAGTTGCCTCCGAGCCTGGCGCAGGGCCTCGGCCGCCAGA +
Preference number: 1 (lower is better)
Translates to: KMRSRISSVPPPPVR*FSCLRAWRRASAAR
Trigger: TCTGGCGGCCGAGGCCCTGCGCCAGGCTCGGAGGCAACTAAATCACCTCACAGGTGGAGGAGGAACGGAGGAGATCCTGGATCTCATCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR CCA 90 bp GTGGCAGGACAGGAGCAGGTGAGGAGGCAGGGCTATGTCGCAGGCTaGGGCATTAGCAGACAGCAGATCAGATTTGTTGAGCAGCAGCAG +
Preference number: 1 (lower is better)
Translates to: VAGQEQVRRQGYVAG*GISRQQIRFVEQQQ
Trigger: CTGCTGCTGCTCAACAAATCTGATCTGCTGTCTGCTAATGCCCCAGCCTGCGACATAGCCCTGCCTCCTCACCTGCTCCTGTCCTGCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR TCA 90 bp CTAGGTTTGCCATCTTGGATCATGACCTTGTGGGAACTCCGAGGCTaGGTCCCAGGCTCTGGACCTCACTTGCCCACACAGAAGTCCTGG +
Preference number: 1 (lower is better)
Translates to: LGLPSWIMTLWELRG*VPGSGPHLPTQKSW
Trigger: CCAGGACTTCTGTGTGGGCAAGTGAGGTCCAGAGCCTGGGACTCAGCCTCGGAGTTCCCACAAGGTCATGATCCAAGATGGCAAACCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR TCA 90 bp TTAATCCCGACATCGGGGGTGAGGAAGTATCCACTGTCAGATCCCTaGTCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCAGT +
Preference number: 1 (lower is better)
Translates to: LIPTSGVRKYPLSDP*SMSLSSLWRAADAS
Trigger: ACTGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCCTCACCCCCGATGTCGGGATTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
3UTR GCA 90 bp TTAGCAGACAGCAGATCAGATTTGTTGAGCAGCAGCAGGAGGCGCTaGCCACCGCTGTCTTGGCTTTGTGCTAGCAGTGGGGTCACTACA +
Preference number: 1 (lower is better)
Translates to: LADSRSDLLSSSRRR*PPLSWLCASSGVTT
Trigger: TGTAGTGACCCCACTGCTAGCACAAAGCCAAGACAGCGGTGGGCAGCGCCTCCTGCTGCTGCTCAACAAATCTGATCTGCTGTCTGCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR CCA 90 bp TTGGATCATGACCTTGTGGGAACTCCGAGGCTGAGTCCCAGGCTCTaGACCTCACTTGCCCACACAGAAGTCCTGGAAGATGAGATCCAG +
Preference number: 1 (lower is better)
Translates to: LDHDLVGTPRLSPRL*TSLAHTEVLEDEIQ
Trigger: CTGGATCTCATCTTCCAGGACTTCTGTGTGGGCAAGTGAGGTCCAGAGCCTGGGACTCAGCCTCGGAGTTCCCACAAGGTCATGATCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR GCA 90 bp CCTCCACATAGGCCAGAGCCTGGGGAGGAGGGGAGATGTCACAGGTaGTCTCTCAGTCTCAGGTCTAACTCCAGTTTGATCTATACAACC +
Preference number: 1 (lower is better)
Translates to: PPHRPEPGEEGRCHR*SLSLRSNSSLIYTT
Trigger: GGTTGTATAGATCAAACTGGAGTTAGACCTGAGACTGAGAGAGCACCTGTGACATCTCCCCTCCTCCCCAGGCTCTGGCCTATGTGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
3UTR CCA 90 bp AAGGACCTCATGGCTGTGAAGGACTTTGCGGGTTCCAGAAGGCTGTaGGCAGCACGGAGCTTGGCCTACATGGAGATTTACAATGGGTTC +
Preference number: 1 (lower is better)
Translates to: KDLMAVKDFAGSRRL*AARSLAYMEIYNGF
Trigger: GAACCCATTGTAAATCTCCATGTAGGCCAAGCTCCGTGCTGCCCACAGCCTTCTGGAACCCGCAAAGTCCTTCACAGCCATGAGGTCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
3UTR TCA 90 bp ACTGGAATCTTCCACAAGTTCACTAAGGAAAGGACCTCATGGCTGTaGAGGACTTTGCGGGTTCCAGAAGGCTGTGGGCAGCACGGAGCT +
Preference number: 1 (lower is better)
Translates to: TGIFHKFTKERTSWL*RTLRVPEGCGQHGA
Trigger: AGCTCCGTGCTGCCCACAGCCTTCTGGAACCCGCAAAGTCCTTCACAGCCATGAGGTCCTTTCCTTAGTGAACTTGTGGAAGATTCCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
3UTR GCA 90 bp GCCAGGACTACACAGAGAAGCCCTGTCGTGGCTCAGCATATAACATaGAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGC +
Preference number: 1 (lower is better)
Translates to: ARTTQRSPVVAQHIT*NGFHIQHYIIQALG
Trigger: GCCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTGAGCCACGACAGGGCTTCTCTGTGTAGTCCTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR CCA 90 bp AACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTaGCAAGGTGATGCTGACCTTAATCCCGACATCGGGGGTGAGGAA +
Preference number: 1 (lower is better)
Translates to: NMQRVSHPALHHSGT*QGDADLNPDIGGEE
Trigger: TTCCTCACCCCCGATGTCGGGATTAAGGTCAGCATCACCTTGCCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR CCA 90 bp AGCCCTCTCTCGGCCATGATTCTCTTATCTGACTTTCTGACACTGTaGGAAGACTATACTGGAATCTTCCACAAGTTCACTAAGGAAAGG +
Preference number: 1 (lower is better)
Translates to: SPLSAMILLSDFLTL*EDYTGIFHKFTKER
Trigger: CCTTTCCTTAGTGAACTTGTGGAAGATTCCAGTATAGTCTTCCCACAGTGTCAGAAAGTCAGATAAGAGAATCATGGCCGAGAGAGGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
3UTR-3UTR GCA 90 bp GGGCCCTGCGCACACCCTCCTGCTCAACAGCGCCCACGCCTTCCCGGAGCCCTGTCGGTCTTCAGGGCCTaGAGGAGGCTGTCCATCCCG +
Preference number: 2 (lower is better)
Translates to: GPCAHPPAQQRPRLPGALSVFRA*RRLSIP
Trigger: CGGGATGGACAGCCTCCTGCAGGCCCTGAAGACCGA...CAGGGCTCCGGGAAGGCGTGGGCGCTGTTGAGCAGGAGGGTGTGCGCAGGGCCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR CCA 90 bp AGCTCGGTCTTCAGGGCCTGCAGGAGGCTGTCCATCCCGGCTCCCGTGTGGCAGCCAGCACGTCACGGGTaGTCCCAGGCTCTGGGGACA +
Preference number: 2 (lower is better)
Translates to: SSVFRACRRLSIPAPVWQPARHG*SQALGT
Trigger: TGTCCCCAGAGCCTGGGACCACCCGTGACGTGCTGG...CTGCCACACGGGAGCCGGGATGGACAGCCTCCTGCAGGCCCTGAAGACCGAGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR TCA 90 bp AGCCAGCTCGGTCTTCAGGGCCTGCAGGAGGCTGTCCATCCCGGCTCCCGTGTGCCAGCACCCCCAGAATaGTGTCAGCCTGCTCCAGCC +
Preference number: 2 (lower is better)
Translates to: SQLGLQGLQEAVHPGSRVPAPPE*CQPAPA
Trigger: GGCTGGAGCAGGCTGACATCATTCTGGGGGTGCTGG...CACACGGGAGCCGGGATGGACAGCCTCCTGCAGGCCCTGAAGACCGAGCTGGCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR TCA 90 bp TGGATGGGTCCCCACACACCGCAGCCAGCTCGGTCTTCAGGGCCTGCAGGAGGCTGGGAACTCCGAGGCTaGGTCCCAGGCTCTGGACCT +
Preference number: 2 (lower is better)
Translates to: WMGPHTPQPARSSGPAGGWELRG*VPGSGP
Trigger: AGGTCCAGAGCCTGGGACTCAGCCTCGGAGTTCCCA...GCCTCCTGCAGGCCCTGAAGACCGAGCTGGCTGCGGTGTGTGGGGACCCATCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR CCA 90 bp CGGTCTTCAGGGCCTGCAGGAGGCTGTCCATCCCGGCTCCCGTGTGGCAGGACACCAGGAAGCTGCAGCTaGATGAGGAGGCCAGGTCGG +
Preference number: 2 (lower is better)
Translates to: RSSGPAGGCPSRLPCGRTPGSCS*MRRPGR
Trigger: CCGACCTGGCCTCCTCATCCAGCTGCAGCTTCCTGG...TGTCCTGCCACACGGGAGCCGGGATGGACAGCCTCCTGCAGGCCCTGAAGACCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR TCA 90 bp AGGGCCTGCAGGAGGCTGTCCATCCCGGCTCCCGTGTGGCAGGACAGGAGCAGGCATTGGGAGGTCCAGTaGCCACAACATTTGCCCCCG +
Preference number: 2 (lower is better)
Translates to: RACRRLSIPAPVWQDRSRHWEVQ*PQHLPP
Trigger: CGGGGGCAAATGTTGTGGTCACTGGACCTCCCAATG...CCTGCTCCTGTCCTGCCACACGGGAGCCGGGATGGACAGCCTCCTGCAGGCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
3UTR-3UTR GCA 90 bp AGCTCGGTCTTCAGGGCCTGCAGGAGGCTGTCCATCCCGGCTCCCGTGTGGCAGAGAATGATGTCAGCCTaGTCCAGCCTGTGGCGGGCC +
Preference number: 2 (lower is better)
Translates to: SSVFRACRRLSIPAPVWQRMMSA*SSLWRA
Trigger: GGCCCGCCACAGGCTGGAGCAGGCTGACATCATTCT...CTGCCACACGGGAGCCGGGATGGACAGCCTCCTGCAGGCCCTGAAGACCGAGCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR GCA 90 bp AGCCAGCTCGGTCTTCAGGGCCTGCAGGAGGCTGTCCATCCCGGCTCCCGTGTGAGAATGATGTCAGCCTaGTCCAGCCTGTGGCGGGCC +
Preference number: 2 (lower is better)
Translates to: SQLGLQGLQEAVHPGSRVRMMSA*SSLWRA
Trigger: GGCCCGCCACAGGCTGGAGCAGGCTGACATCATTCT...CACACGGGAGCCGGGATGGACAGCCTCCTGCAGGCCCTGAAGACCGAGCTGGCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR GCA 90 bp CACCGCAGCCAGCTCGGTCTTCAGGGCCTGCAGGAGGCTGTCCATCCCGGCTCCCAGTGTCCAGGAAGCTaGAGCTGGATGAGGAGGCCA +
Preference number: 2 (lower is better)
Translates to: HRSQLGLQGLQEAVHPGSQCPGS*SWMRRP
Trigger: TGGCCTCCTCATCCAGCTGCAGCTTCCTGGACACTG...GGAGCCGGGATGGACAGCCTCCTGCAGGCCCTGAAGACCGAGCTGGCTGCGGTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR GCA 90 bp GTCCTGTGGATGGGTCCCCACACACCGCAGCCAGCTCGGTCTTCAGGGCCTGCATCGGTCTTCAGGGCCTaGAGGAGGCTGTCCATCCCG +
Preference number: 2 (lower is better)
Translates to: VLWMGPHTPQPARSSGPASVFRA*RRLSIP
Trigger: CGGGATGGACAGCCTCCTGCAGGCCCTGAAGACCGA...TGCAGGCCCTGAAGACCGAGCTGGCTGCGGTGTGTGGGGACCCATCCACAGGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR TCA 90 bp TGGATGGGTCCCCACACACCGCAGCCAGCTCGGTCTTCAGGGCCTGCAGGAGGCTCCCGACATCGGGGGTaGGGAAGTATCCACTGTCAG +
Preference number: 2 (lower is better)
Translates to: WMGPHTPQPARSSGPAGGSRHRG*GSIHCQ
Trigger: CTGACAGTGGATACTTCCTCACCCCCGATGTCGGGA...GCCTCCTGCAGGCCCTGAAGACCGAGCTGGCTGCGGTGTGTGGGGACCCATCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR TCA 90 bp CGGTCTTCAGGGCCTGCAGGAGGCTGTCCATCCCGGCTCCCGTGTGGCAGGACATCCCGACATCGGGGGTaGGGAAGTATCCACTGTCAG +
Preference number: 2 (lower is better)
Translates to: RSSGPAGGCPSRLPCGRTSRHRG*GSIHCQ
Trigger: CTGACAGTGGATACTTCCTCACCCCCGATGTCGGGA...TGTCCTGCCACACGGGAGCCGGGATGGACAGCCTCCTGCAGGCCCTGAAGACCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR TCA 90 bp GTACTGGTGCCTGACCCGGGTCAAGAGCGGTGGTCCTGTGGATGGGTCCCCACACCAGCACCCCCAGAATaGTGTCAGCCTGCTCCAGCC +
Preference number: 2 (lower is better)
Translates to: VLVPDPGQERWSCGWVPTPAPPE*CQPAPA
Trigger: GGCTGGAGCAGGCTGACATCATTCTGGGGGTGCTGG...TGTGGGGACCCATCCACAGGACCACCGCTCTTGACCCGGGTCAGGCACCAGTAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR TCA 90 bp AGCCAGCTCGGTCTTCAGGGCCTGCAGGAGGCTGTCCATCCCGGCTCCCGTGTGCCACTGTCAGATCCCTaGTCCATGTCTCTCTCCTCA +
Preference number: 2 (lower is better)
Translates to: SQLGLQGLQEAVHPGSRVPLSDP*SMSLSS
Trigger: TGAGGAGAGAGACATGGATCAGGGATCTGACAGTGG...CACACGGGAGCCGGGATGGACAGCCTCCTGCAGGCCCTGAAGACCGAGCTGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR GCA 90 bp AGCAAGACAGGGAACCCAGCCAAGTCCACGGGAGTCTCCAGCACGTCACGGGTGCTCACTGTGGAGGGCTaGAGACGCCAGTGCTCTCCT +
Preference number: 2 (lower is better)
Translates to: SKTGNPAKSTGVSSTSRVLTVEG*RRQCSP
Trigger: AGGAGAGCACTGGCGTCTGCAGCCCTCCACAGTGAG...CACCCGTGACGTGCTGGAGACTCCCGTGGACTTGGCTGGGTTCCCTGTCTTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR GCA 90 bp GTGGATGGGTCCCCACACACCGCAGCCAGCTCGGTCTTCAGGGCCTGCAGGAGGGTAGATTCACCAGACTaGTCTTGCCCGCATTGGGAG +
Preference number: 2 (lower is better)
Translates to: VDGSPHTAASSVFRACRRVDSPD*SCPHWE
Trigger: CTCCCAATGCGGGCAAGAGCAGTCTGGTGAATCTAC...CCTCCTGCAGGCCCTGAAGACCGAGCTGGCTGCGGTGTGTGGGGACCCATCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
3UTR CAA 90 bp ATTGGGAGGTCCAGTGACCACAACATTTGCCCCCGAGAGGAGCCTTaGTCCACGCCTAGCATCTCGCAGGTGGGAACCCAGCGCCACCTC +
Preference number: 2 (lower is better)
Translates to: IGRSSDHNICPREEP*STPSISQVGTQRHL
Trigger: GAGGTGGCGCTGGGTTCCCACCTGCGAGATGCTAGGCGTGGACAAAGGCTCCTCTCGGGGGCAAATGTTGTGGTCACTGGACCTCCCAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
3UTR-3UTR GCA 90 bp AGCAAGACAGGGAACCCAGCCAAGTCCACGGGAGTCTCCAGCACGTCACGGGTGCAGTGTCCAGGAAGCTaGAGCTGGATGAGGAGGCCA +
Preference number: 2 (lower is better)
Translates to: SKTGNPAKSTGVSSTSRVQCPGS*SWMRRP
Trigger: TGGCCTCCTCATCCAGCTGCAGCTTCCTGGACACTG...CACCCGTGACGTGCTGGAGACTCCCGTGGACTTGGCTGGGTTCCCTGTCTTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR CCA 90 bp GTACTGGTGCCTGACCCGGGTCAAGAGCGGTGGTCCTGTGGATGGGTCCCCACAAGGCAGGCAGATTTCTaGGTTCAAGGCCAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: VLVPDPGQERWSCGWVPTRQADF*VQGQPG
Trigger: ACCAGGCTGGCCTTGAACCCAGAAATCTGCCTGCCT...TGTGGGGACCCATCCACAGGACCACCGCTCTTGACCCGGGTCAGGCACCAGTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR TCA 90 bp GGTCCTGTGGATGGGTCCCCACACACCGCAGCCAGCTCGGTCTTCAGGGCCTGCGATAAGGGAAGGGCATaGTCAAAGCACAGGAGATAC +
Preference number: 2 (lower is better)
Translates to: GPVDGSPHTAASSVFRACDKGRA*SKHRRY
Trigger: GTATCTCCTGTGCTTTGATCATGCCCTTCCCTTATC...GCAGGCCCTGAAGACCGAGCTGGCTGCGGTGTGTGGGGACCCATCCACAGGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR CCA 90 bp AGGGCCTGCAGGAGGCTGTCCATCCCGGCTCCCGTGTGGCAGGACAGGAGCAGGCTAGGTTTGCCATCTTaGATCATGACCTTGTGGGAA +
Preference number: 2 (lower is better)
Translates to: RACRRLSIPAPVWQDRSRLGLPS*IMTLWE
Trigger: TTCCCACAAGGTCATGATCCAAGATGGCAAACCTAG...CCTGCTCCTGTCCTGCCACACGGGAGCCGGGATGGACAGCCTCCTGCAGGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR CAA 90 bp AGGGCTATGTCGCAGGCTGGGGCATTAGCAGACAGCAGATCAGATTaGTTGAGCAGCAGCAGGAGGCGCTGCCCACCGCTGTCTTGGCTT +
Preference number: 2 (lower is better)
Translates to: RAMSQAGALADSRSD*LSSSRRRCPPLSWL
Trigger: AAGCCAAGACAGCGGTGGGCAGCGCCTCCTGCTGCTGCTCAACAAATCTGATCTGCTGTCTGCTAATGCCCCAGCCTGCGACATAGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR GCA 90 bp GGTCCTGTGGATGGGTCCCCACACACCGCAGCCAGCTCGGTCTTCAGGGCCTGCACTTTCTCTAAAGGATaGATGGATGGAGCTGGAGAG +
Preference number: 2 (lower is better)
Translates to: GPVDGSPHTAASSVFRACTFSKG*MDGAGE
Trigger: CTCTCCAGCTCCATCCATGCATCCTTTAGAGAAAGT...GCAGGCCCTGAAGACCGAGCTGGCTGCGGTGTGTGGGGACCCATCCACAGGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
3UTR CAA 90 bp GCTATGTCGCAGGCTGGGGCATTAGCAGACAGCAGATCAGATTTGTaGAGCAGCAGCAGGAGGCGCTGCCCACCGCTGTCTTGGCTTTGT +
Preference number: 2 (lower is better)
Translates to: AMSQAGALADSRSDL*SSSRRRCPPLSWLC
Trigger: ACAAAGCCAAGACAGCGGTGGGCAGCGCCTCCTGCTGCTGCTCAACAAATCTGATCTGCTGTCTGCTAATGCCCCAGCCTGCGACATAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR TCA 90 bp TGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCATCCCGACATCGGGGGTaGGGAAGTATCCACTGTCAG +
Preference number: 2 (lower is better)
Translates to: CQIPDPCLSPHCGGLQTPSRHRG*GSIHCQ
Trigger: CTGACAGTGGATACTTCCTCACCCCCGATGTCGGGA...TGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
3UTR-3UTR TCA 90 bp GGTCCTGTGGATGGGTCCCCACACACCGCAGCCAGCTCGGTCTTCAGGGCCTGCCAGGAGATACTTGGATaGAACTGTCACAGCAATACT +
Preference number: 2 (lower is better)
Translates to: GPVDGSPHTAASSVFRACQEILG*NCHSNT
Trigger: AGTATTGCTGTGACAGTTTCATCCAAGTATCTCCTG...GCAGGCCCTGAAGACCGAGCTGGCTGCGGTGTGTGGGGACCCATCCACAGGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR CCA 90 bp GGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGGGTGGTCCCAGGCTCTaGGGACACGATGGACACTGG +
Preference number: 2 (lower is better)
Translates to: GSIHCQIPDPCLSPHCGGGGPRL*GHDGHW
Trigger: CCAGTGTCCATCGTGTCCCCAGAGCCTGGGACCACC...CCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR GCA 90 bp CCCTGGAGGTGGTACTGGTGCCTGACCCGGGTCAAGAGCGGTGGTCCTGTGGATGCTCAGCATATAACATaGAACGGGTTTCACATCCAG +
Preference number: 2 (lower is better)
Translates to: PWRWYWCLTRVKSGGPVDAQHIT*NGFHIQ
Trigger: CTGGATGTGAAACCCGTTGCATGTTATATGCTGAGC...ATCCACAGGACCACCGCTCTTGACCCGGGTCAGGCACCAGTACCACCTCCAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR GCA 90 bp TGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCAACTTCTCTGTCCGCCTaGTCCAACACACCCTCTTCC +
Preference number: 2 (lower is better)
Translates to: CQIPDPCLSPHCGGLQTPTSLSA*SNTPSS
Trigger: GGAAGAGGGTGTGTTGGAGCAGGCGGACAGAGAAGT...TGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
3UTR-3UTR CCA 90 bp AAGCCCTGTCGTGGCTCAGCATATAACATGCAACGGGTTTCACATCCAGCACTACCAGCACGTCACGGGTaGTCCCAGGCTCTGGGGACA +
Preference number: 2 (lower is better)
Translates to: KPCRGSAYNMQRVSHPALPARHG*SQALGT
Trigger: TGTCCCCAGAGCCTGGGACCACCCGTGACGTGCTGG...TAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTGAGCCACGACAGGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR CAA 90 bp ACTGGCTTTTGGCTGAGTAGATTCACCAGACTGCTCTTGCCCGCATaGGGAGGTCCAGTGACCACAACATTTGCCCCCGAGAGGAGCCTT +
Preference number: 2 (lower is better)
Translates to: TGFWLSRFTRLLLPA*GGPVTTTFAPERSL
Trigger: AAGGCTCCTCTCGGGGGCAAATGTTGTGGTCACTGGACCTCCCAATGCGGGCAAGAGCAGTCTGGTGAATCTACTCAGCCAAAAGCCAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
3UTR CAA 90 bp ACGATGGACACTGGCTTTTGGCTGAGTAGATTCACCAGACTGCTCTaGCCCGCATTGGGAGGTCCAGTGACCACAACATTTGCCCCCGAG +
Preference number: 2 (lower is better)
Translates to: TMDTGFWLSRFTRLL*PALGGPVTTTFAPE
Trigger: CTCGGGGGCAAATGTTGTGGTCACTGGACCTCCCAATGCGGGCAAGAGCAGTCTGGTGAATCTACTCAGCCAAAAGCCAGTGTCCATCGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
3UTR CAA 90 bp CGTCACAGCACGTGTGCCGGTCGGAGGACAATTTGTAGCTGTTGGTaGTCTCCTTCCACCATGTGGCTCTGGGAGCAAATTCAGGTCACG +
Preference number: 2 (lower is better)
Translates to: RHSTCAGRRTICSCW*SPSTMWLWEQIQVT
Trigger: CGTGACCTGAATTTGCTCCCAGAGCCACATGGTGGAAGGAGACAACCAACAGCTACAAATTGTCCTCCGACCGGCACACGTGCTGTGACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
3UTR-3UTR TCA 90 bp CCTCTCCGAAGTCAATGTAGGCCTCCACATAGGCCAGAGCCTGGGGAGGAGGGGGGTCTAACTCCAGTTTaGTCTATACAACCAGACTGG +
Preference number: 2 (lower is better)
Translates to: PLRSQCRPPHRPEPGEEGGLTPV*SIQPDW
Trigger: CCAGTCTGGTTGTATAGATCAAACTGGAGTTAGACC...CCCCTCCTCCCCAGGCTCTGGCCTATGTGGAGGCCTACATTGACTTCGGAGAGG
56% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
3UTR-3UTR TCA 90 bp GCATTAGCAGACAGCAGATCAGATTTGTTGAGCAGCAGCAGGAGGCGCTGCCCACCACTGTCAGATCCCTaGTCCATGTCTCTCTCCTCA +
Preference number: 2 (lower is better)
Translates to: ALADSRSDLLSSSRRRCPPLSDP*SMSLSS
Trigger: TGAGGAGAGAGACATGGATCAGGGATCTGACAGTGG...TGGGCAGCGCCTCCTGCTGCTGCTCAACAAATCTGATCTGCTGTCTGCTAATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR TCA 90 bp TTTGCCATCTTGGATCATGACCTTGTGGGAACTCCGAGGCTGAGTCCCAGGCTCCCACTGTCAGATCCCTaGTCCATGTCTCTCTCCTCA +
Preference number: 2 (lower is better)
Translates to: FAILDHDLVGTPRLSPRLPLSDP*SMSLSS
Trigger: TGAGGAGAGAGACATGGATCAGGGATCTGACAGTGG...GAGCCTGGGACTCAGCCTCGGAGTTCCCACAAGGTCATGATCCAAGATGGCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
3UTR-3UTR TCA 90 bp CCTTCCACCATGTGGCTCTGGGAGCAAATTCAGGTCACGAAGCTTTCAAGTGTCTCCCGACATCGGGGGTaGGGAAGTATCCACTGTCAG +
Preference number: 2 (lower is better)
Translates to: PSTMWLWEQIQVTKLSSVSRHRG*GSIHCQ
Trigger: CTGACAGTGGATACTTCCTCACCCCCGATGTCGGGA...GACACTTGAAAGCTTCGTGACCTGAATTTGCTCCCAGAGCCACATGGTGGAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
3UTR-3UTR GCA 90 bp TGGATGGGTCCCCACACACCGCAGCCAGCTCGGTCTTCAGGGCCTGCAGGAGGCATTCCAGGTACCACATaGTACTACACAAGTAAAAAT +
Preference number: 2 (lower is better)
Translates to: WMGPHTPQPARSSGPAGGIPGTT*YYTSKN
Trigger: ATTTTTACTTGTGTAGTAGCATGTGGTACCTGGAAT...GCCTCCTGCAGGCCCTGAAGACCGAGCTGGCTGCGGTGTGTGGGGACCCATCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR CCA 90 bp GAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCAGGCAGGCAGATTTCTaGGTTCAAGGCCAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: EVSTVRSLIHVSLLTVEGRQADF*VQGQPG
Trigger: ACCAGGCTGGCCTTGAACCCAGAAATCTGCCTGCCT...GCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR CCA 90 bp GAGGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGAGGCAGGCAGATTTCTaGGTTCAAGGCCAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: EEVSTVRSLIHVSLLTVERQADF*VQGQPG
Trigger: ACCAGGCTGGCCTTGAACCCAGAAATCTGCCTGCCT...CTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR GCA 90 bp ACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCAAGGTGGCTCTGGACCTCACTTaGCCACACAGAAGTCCTGGA +
Preference number: 2 (lower is better)
Translates to: TCNGFHIQHYIIQALGKVALDLT*PHRSPG
Trigger: TCCAGGACTTCTGTGTGGGCAAGTGAGGTCCAGAGC...CACCTTGCCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR CCA 90 bp ATTGGGAGGTCCAGTGACCACAACATTTGCCCCCGAGAGGAGCCTTTGTCCACGCTAGGTTTGCCATCTTaGATCATGACCTTGTGGGAA +
Preference number: 2 (lower is better)
Translates to: IGRSSDHNICPREEPLSTLGLPS*IMTLWE
Trigger: TTCCCACAAGGTCATGATCCAAGATGGCAAACCTAG...CGTGGACAAAGGCTCCTCTCGGGGGCAAATGTTGTGGTCACTGGACCTCCCAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
3UTR-3UTR CCA 90 bp ACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCAAGGTGAGGCAGGCAGATTTCTaGGTTCAAGGCCAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: TCNGFHIQHYIIQALGKVRQADF*VQGQPG
Trigger: ACCAGGCTGGCCTTGAACCCAGAAATCTGCCTGCCT...CACCTTGCCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR CCA 90 bp GAGGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGGCAGCACGGAGCTTaGCCTACATGGAGATTTACA +
Preference number: 2 (lower is better)
Translates to: EEVSTVRSLIHVSLLTVEGQHGA*PTWRFT
Trigger: TGTAAATCTCCATGTAGGCCAAGCTCCGTGCTGCCC...CTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
3UTR-3UTR TCA 90 bp ATAACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCAAGTCCCGACATCGGGGGTaGGGAAGTATCCACTGTCAG +
Preference number: 2 (lower is better)
Translates to: ITCNGFHIQHYIIQALGKSRHRG*GSIHCQ
Trigger: CTGACAGTGGATACTTCCTCACCCCCGATGTCGGGA...CTTGCCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR TCA 90 bp GAGGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGAGTGAGAGCAGGGACTaGGCAAGTGAGATAAGGGAA +
Preference number: 2 (lower is better)
Translates to: EEVSTVRSLIHVSLLTVESESRD*ASEIRE
Trigger: TTCCCTTATCTCACTTGCTCAGTCCCTGCTCTCACT...CTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR CCA 90 bp TTTGCCATCTTGGATCATGACCTTGTGGGAACTCCGAGGCTGAGTCCCAGGCTCCTAGGTTTGCCATCTTaGATCATGACCTTGTGGGAA +
Preference number: 2 (lower is better)
Translates to: FAILDHDLVGTPRLSPRLLGLPS*IMTLWE
Trigger: TTCCCACAAGGTCATGATCCAAGATGGCAAACCTAG...GAGCCTGGGACTCAGCCTCGGAGTTCCCACAAGGTCATGATCCAAGATGGCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
3UTR-3UTR GCA 90 bp GCAAGTGAGATAAGGGAAGGGCATGATCAAAGCACAGGAGATACTTGGATGAAAACGCCAGTGCTCTCCTaGCCTCTGCTAGGTTTGCCA +
Preference number: 2 (lower is better)
Translates to: ASEIREGHDQSTGDTWMKTPVLS*PLLGLP
Trigger: TGGCAAACCTAGCAGAGGGCAGGAGAGCACTGGCGT...TTTCATCCAAGTATCTCCTGTGCTTTGATCATGCCCTTCCCTTATCTCACTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR GCA 90 bp CAGCATATAACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTACGCCAGTGCTCTCCTaGCCTCTGCTAGGTTTGCCA +
Preference number: 2 (lower is better)
Translates to: QHITCNGFHIQHYIIQALTPVLS*PLLGLP
Trigger: TGGCAAACCTAGCAGAGGGCAGGAGAGCACTGGCGT...AAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR CCA 90 bp GAAACTGTCACAGCAATACTCATTCCAGGTACCACATGCTACTACACAAGTAAAGGTGGTCCCAGGCTCTaGGGACACGATGGACACTGG +
Preference number: 2 (lower is better)
Translates to: ETVTAILIPGTTCYYTSKGGPRL*GHDGHW
Trigger: CCAGTGTCCATCGTGTCCCCAGAGCCTGGGACCACC...TTTACTTGTGTAGTAGCATGTGGTACCTGGAATGAGTATTGCTGTGACAGTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR TCA 90 bp GAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCCAGGAGATACTTGGATaGAACTGTCACAGCAATACT +
Preference number: 2 (lower is better)
Translates to: EVSTVRSLIHVSLLTVEGQEILG*NCHSNT
Trigger: AGTATTGCTGTGACAGTTTCATCCAAGTATCTCCTG...GCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR TCA 90 bp GGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCATGATTCTCTTATCTaGCTTTCTGACACTGTGGGA +
Preference number: 2 (lower is better)
Translates to: GSIHCQIPDPCLSPHCGGHDSLI*LSDTVG
Trigger: TCCCACAGTGTCAGAAAGTCAGATAAGAGAATCATG...CCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
3UTR-3UTR GCA 90 bp CCTTTGGTAATTAAAAATGAAATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGACGCCAGTGCTCTCCTaGCCTCTGCTAGGTTTGCCA +
Preference number: 2 (lower is better)
Translates to: PLVIKNEMPLIPALGRQRTPVLS*PLLGLP
Trigger: TGGCAAACCTAGCAGAGGGCAGGAGAGCACTGGCGT...CCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATTTCATTTTTAATTACCAAAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR CCA 90 bp GAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCAGCACAGGAGATACTTaGATGAAACTGTCACAGCAA +
Preference number: 2 (lower is better)
Translates to: EVSTVRSLIHVSLLTVEGSTGDT*MKLSQQ
Trigger: TTGCTGTGACAGTTTCATCCAAGTATCTCCTGTGCT...GCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR CCA 90 bp CCTGTCGTGGCTCAGCATATAACATGCAACGGGTTTCACATCCAGCACTACATCTCTCTAAAGGATGCATaGATGGAGCTGGAGAGATGG +
Preference number: 2 (lower is better)
Translates to: PVVAQHITCNGFHIQHYISLKDA*MELERW
Trigger: CCATCTCTCCAGCTCCATCCATGCATCCTTTAGAGA...GATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTGAGCCACGACAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
3UTR-3UTR TCA 90 bp CAGCATATAACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTCCACTGTCAGATCCCTaGTCCATGTCTCTCTCCTCA +
Preference number: 2 (lower is better)
Translates to: QHITCNGFHIQHYIIQALPLSDP*SMSLSS
Trigger: TGAGGAGAGAGACATGGATCAGGGATCTGACAGTGG...AAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR CCA 90 bp AAGCCCTGTCGTGGCTCAGCATATAACATGCAACGGGTTTCACATCCAGCACTACTAGGTTTGCCATCTTaGATCATGACCTTGTGGGAA +
Preference number: 2 (lower is better)
Translates to: KPCRGSAYNMQRVSHPALLGLPS*IMTLWE
Trigger: TTCCCACAAGGTCATGATCCAAGATGGCAAACCTAG...TAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTGAGCCACGACAGGGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR CCA 90 bp ACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCAAGGTGCTAGGTTTGCCATCTTaGATCATGACCTTGTGGGAA +
Preference number: 2 (lower is better)
Translates to: TCNGFHIQHYIIQALGKVLGLPS*IMTLWE
Trigger: TTCCCACAAGGTCATGATCCAAGATGGCAAACCTAG...CACCTTGCCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR TCA 90 bp ATAACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCAAGGATAAGGGAAGGGCATaGTCAAAGCACAGGAGATAC +
Preference number: 2 (lower is better)
Translates to: ITCNGFHIQHYIIQALGKDKGRA*SKHRRY
Trigger: GTATCTCCTGTGCTTTGATCATGCCCTTCCCTTATC...CTTGCCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR GCA 90 bp GTCACAGCAATACTCATTCCAGGTACCACATGCTACTACACAAGTAAAAATTTACTCACTGTGGAGGGCTaGAGACGCCAGTGCTCTCCT +
Preference number: 2 (lower is better)
Translates to: VTAILIPGTTCYYTSKNLLTVEG*RRQCSP
Trigger: AGGAGAGCACTGGCGTCTGCAGCCCTCCACAGTGAG...TAAATTTTTACTTGTGTAGTAGCATGTGGTACCTGGAATGAGTATTGCTGTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR GCA 90 bp CTTGCCCACACAGAAGTCCTGGAAGATGAGATCCAGGATCTCCTCCGTTCCTCCATTCCAGGTACCACATaGTACTACACAAGTAAAAAT +
Preference number: 2 (lower is better)
Translates to: LAHTEVLEDEIQDLLRSSIPGTT*YYTSKN
Trigger: ATTTTTACTTGTGTAGTAGCATGTGGTACCTGGAAT...GGAGGAACGGAGGAGATCCTGGATCTCATCTTCCAGGACTTCTGTGTGGGCAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR CCA 90 bp ACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCAAGGTGAGCACAGGAGATACTTaGATGAAACTGTCACAGCAA +
Preference number: 2 (lower is better)
Translates to: TCNGFHIQHYIIQALGKVSTGDT*MKLSQQ
Trigger: TTGCTGTGACAGTTTCATCCAAGTATCTCCTGTGCT...CACCTTGCCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR TCA 90 bp GAAACTGTCACAGCAATACTCATTCCAGGTACCACATGCTACTACACAAGTAAACCACTGTCAGATCCCTaGTCCATGTCTCTCTCCTCA +
Preference number: 2 (lower is better)
Translates to: ETVTAILIPGTTCYYTSKPLSDP*SMSLSS
Trigger: TGAGGAGAGAGACATGGATCAGGGATCTGACAGTGG...TTTACTTGTGTAGTAGCATGTGGTACCTGGAATGAGTATTGCTGTGACAGTTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR GCA 90 bp GCAAGTGAGATAAGGGAAGGGCATGATCAAAGCACAGGAGATACTTGGATGAAAGCTCAGCATATAACATaGAACGGGTTTCACATCCAG +
Preference number: 2 (lower is better)
Translates to: ASEIREGHDQSTGDTWMKAQHIT*NGFHIQ
Trigger: CTGGATGTGAAACCCGTTGCATGTTATATGCTGAGC...TTTCATCCAAGTATCTCCTGTGCTTTGATCATGCCCTTCCCTTATCTCACTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR GCA 90 bp GCAAGTGAGATAAGGGAAGGGCATGATCAAAGCACAGGAGATACTTGGATGAAAATTCCAGGTACCACATaGTACTACACAAGTAAAAAT +
Preference number: 2 (lower is better)
Translates to: ASEIREGHDQSTGDTWMKIPGTT*YYTSKN
Trigger: ATTTTTACTTGTGTAGTAGCATGTGGTACCTGGAAT...TTTCATCCAAGTATCTCCTGTGCTTTGATCATGCCCTTCCCTTATCTCACTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR GCA 72 bp TGCTCCAGCCTGTGGCGGGCCCTGCGCACACCCTCCTaGTCAACAGCGCCCACGCCTTCCCGGAGCCCTGCA +
Preference number: 3 (lower is better)
Translates to: CSSLWRALRTPS*STAPTPSRSPA
Trigger: TGCAGGGCTCCGGGAAGGCGTGGGCGCTGTTGAGCAGGAGGGTGTGCGCAGGGCCCGCCACAGGCTGGAGCA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR TCA 72 bp AGGAGGCCAGGTCGGAGGCGTCCAGCACCCCCAGAATaGTGTCAGCCTGCTCCAGCCTGTGGCGGGCCCTGC +
Preference number: 3 (lower is better)
Translates to: RRPGRRRPAPPE*CQPAPACGGPC
Trigger: GCAGGGCCCGCCACAGGCTGGAGCAGGCTGACATCATTCTGGGGGTGCTGGACGCCTCCGACCTGGCCTCCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR GCA 72 bp TCGGAGGCGTCCAGCACCCCCAGAATGATGTCAGCCTaGTCCAGCCTGTGGCGGGCCCTGCGCACACCCTCC +
Preference number: 3 (lower is better)
Translates to: SEASSTPRMMSA*SSLWRALRTPS
Trigger: GGAGGGTGTGCGCAGGGCCCGCCACAGGCTGGAGCAGGCTGACATCATTCTGGGGGTGCTGGACGCCTCCGA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR GCA 72 bp TCCCCACACACCGCAGCCAGCTCGGTCTTCAGGGCCTaGAGGAGGCTGTCCATCCCGGCTCCCGTGTGGCAG +
Preference number: 3 (lower is better)
Translates to: SPHTAASSVFRA*RRLSIPAPVWQ
Trigger: CTGCCACACGGGAGCCGGGATGGACAGCCTCCTGCAGGCCCTGAAGACCGAGCTGGCTGCGGTGTGTGGGGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR CAA 90 bp GGGCCCTGCGCACACCCTCCTGCTCAACAGCGCCCACGCCTTCCCGGAGCCCTGAGCAGATCAGATTTGTaGAGCAGCAGCAGGAGGCGC +
Preference number: 3 (lower is better)
Translates to: GPCAHPPAQQRPRLPGALSRSDL*SSSRRR
Trigger: GCGCCTCCTGCTGCTGCTCAACAAATCTGATCTGCT...CAGGGCTCCGGGAAGGCGTGGGCGCTGTTGAGCAGGAGGGTGTGCGCAGGGCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR CCA 72 bp GTGCCTGACCCGGGTCAAGAGCGGTGGTCCTGTGGATaGGTCCCCACACACCGCAGCCAGCTCGGTCTTCAG +
Preference number: 3 (lower is better)
Translates to: VPDPGQERWSCG*VPTHRSQLGLQ
Trigger: CTGAAGACCGAGCTGGCTGCGGTGTGTGGGGACCCATCCACAGGACCACCGCTCTTGACCCGGGTCAGGCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR TCA 72 bp AGGCATCCAGGCAGCCCTGGAGGTGGTACTGGTGCCTaGCCCGGGTCAAGAGCGGTGGTCCTGTGGATGGGT +
Preference number: 3 (lower is better)
Translates to: RHPGSPGGGTGA*PGSRAVVLWMG
Trigger: ACCCATCCACAGGACCACCGCTCTTGACCCGGGTCAGGCACCAGTACCACCTCCAGGGCTGCCTGGATGCCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR GCA 72 bp CTCCTGCTCAACAGCGCCCACGCCTTCCCGGAGCCCTaGAGTGTCGCTCAGCAAGACAGGGAACCCAGCCAA +
Preference number: 3 (lower is better)
Translates to: LLLNSAHAFPEP*SVAQQDREPSQ
Trigger: TTGGCTGGGTTCCCTGTCTTGCTGAGCGACACTGCAGGGCTCCGGGAAGGCGTGGGCGCTGTTGAGCAGGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR CCA 72 bp CAGCCAAGTCCACGGGAGTCTCCAGCACGTCACGGGTaGTCCCAGGCTCTGGGGACACGATGGACACTGGCT +
Preference number: 3 (lower is better)
Translates to: QPSPRESPARHG*SQALGTRWTLA
Trigger: AGCCAGTGTCCATCGTGTCCCCAGAGCCTGGGACCACCCGTGACGTGCTGGAGACTCCCGTGGACTTGGCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR CCA 72 bp TTGAGCAGCAGCAGGAGGCGCTGCCCACCGCTGTCTTaGCTTTGTGCTAGCAGTGGGGTCACTACAGTGTCC +
Preference number: 3 (lower is better)
Translates to: LSSSRRRCPPLS*LCASSGVTTVS
Trigger: GGACACTGTAGTGACCCCACTGCTAGCACAAAGCCAAGACAGCGGTGGGCAGCGCCTCCTGCTGCTGCTCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR CAA 90 bp TGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCAGGCTCTGGACCTCACTaGCCCACACAGAAGTCCTGG +
Preference number: 3 (lower is better)
Translates to: CQIPDPCLSPHCGGLQTPGSGPH*PTQKSW
Trigger: CCAGGACTTCTGTGTGGGCAAGTGAGGTCCAGAGCC...TGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR CAA 90 bp CTTGCCCACACAGAAGTCCTGGAAGATGAGATCCAGGATCTCCTCCGTTCCTCCCTGCTCTTGCCCGCATaGGGAGGTCCAGTGACCACA +
Preference number: 3 (lower is better)
Translates to: LAHTEVLEDEIQDLLRSSLLLPA*GGPVTT
Trigger: TGTGGTCACTGGACCTCCCAATGCGGGCAAGAGCAG...GGAGGAACGGAGGAGATCCTGGATCTCATCTTCCAGGACTTCTGTGTGGGCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
3UTR TCA 72 bp CCATCTTGGATCATGACCTTGTGGGAACTCCGAGGCTaGGTCCCAGGCTCTGGACCTCACTTGCCCACACAG +
Preference number: 3 (lower is better)
Translates to: PSWIMTLWELRG*VPGSGPHLPTQ
Trigger: CTGTGTGGGCAAGTGAGGTCCAGAGCCTGGGACTCAGCCTCGGAGTTCCCACAAGGTCATGATCCAAGATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR TCA 72 bp TCACCAGACTGCTCTTGCCCGCATTGGGAGGTCCAGTaGCCACAACATTTGCCCCCGAGAGGAGCCTTTGTC +
Preference number: 3 (lower is better)
Translates to: SPDCSCPHWEVQ*PQHLPPRGAFV
Trigger: GACAAAGGCTCCTCTCGGGGGCAAATGTTGTGGTCACTGGACCTCCCAATGCGGGCAAGAGCAGTCTGGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
3UTR GCA 72 bp AGCAGATCAGATTTGTTGAGCAGCAGCAGGAGGCGCTaGCCACCGCTGTCTTGGCTTTGTGCTAGCAGTGGG +
Preference number: 3 (lower is better)
Translates to: SRSDLLSSSRRR*PPLSWLCASSG
Trigger: CCCACTGCTAGCACAAAGCCAAGACAGCGGTGGGCAGCGCCTCCTGCTGCTGCTCAACAAATCTGATCTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR GCA 72 bp AGGCCAGAGCCTGGGGAGGAGGGGAGATGTCACAGGTaGTCTCTCAGTCTCAGGTCTAACTCCAGTTTGATC +
Preference number: 3 (lower is better)
Translates to: RPEPGEEGRCHR*SLSLRSNSSLI
Trigger: GATCAAACTGGAGTTAGACCTGAGACTGAGAGAGCACCTGTGACATCTCCCCTCCTCCCCAGGCTCTGGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
3UTR CCA 72 bp CAGGAGCAGGTGAGGAGGCAGGGCTATGTCGCAGGCTaGGGCATTAGCAGACAGCAGATCAGATTTGTTGAG +
Preference number: 3 (lower is better)
Translates to: QEQVRRQGYVAG*GISRQQIRFVE
Trigger: CTCAACAAATCTGATCTGCTGTCTGCTAATGCCCCAGCCTGCGACATAGCCCTGCCTCCTCACCTGCTCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR GCA 72 bp AGCGCCACCTCCAGGGCTCGAACTTCTCTGTCCGCCTaGTCCAACACACCCTCTTCCAAATTATCATCCTCT +
Preference number: 3 (lower is better)
Translates to: SATSRARTSLSA*SNTPSSKLSSS
Trigger: AGAGGATGATAATTTGGAAGAGGGTGTGTTGGAGCAGGCGGACAGAGAAGTTCGAGCCCTGGAGGTGGCGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
3UTR CCA 72 bp TTGCGGGTTCCAGAAGGCTGTGGGCAGCACGGAGCTTaGCCTACATGGAGATTTACAATGGGTTCACTCTGG +
Preference number: 3 (lower is better)
Translates to: LRVPEGCGQHGA*PTWRFTMGSLW
Trigger: CCAGAGTGAACCCATTGTAAATCTCCATGTAGGCCAAGCTCCGTGCTGCCCACAGCCTTCTGGAACCCGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
3UTR CCA 72 bp AGCACGTGTGCCGGTCGGAGGACAATTTGTAGCTGTTaGTTGTCTCCTTCCACCATGTGGCTCTGGGAGCAA +
Preference number: 3 (lower is better)
Translates to: STCAGRRTICSC*LSPSTMWLWEQ
Trigger: TTGCTCCCAGAGCCACATGGTGGAAGGAGACAACCAACAGCTACAAATTGTCCTCCGACCGGCACACGTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
3UTR-3UTR CAA 90 bp GAGGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGAGCAGATCAGATTTGTaGAGCAGCAGCAGGAGGCGC +
Preference number: 3 (lower is better)
Translates to: EEVSTVRSLIHVSLLTVESRSDL*SSSRRR
Trigger: GCGCCTCCTGCTGCTGCTCAACAAATCTGATCTGCT...CTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR CCA 72 bp CGGGTTTCACATCCAGCACTACATCATTCAGGCACTTaGCAAGGTGATGCTGACCTTAATCCCGACATCGGG +
Preference number: 3 (lower is better)
Translates to: RVSHPALHHSGT*QGDADLNPDIG
Trigger: CCCGATGTCGGGATTAAGGTCAGCATCACCTTGCCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR CCA 72 bp CCAGAAGGCTGTGGGCAGCACGGAGCTTGGCCTACATaGAGATTTACAATGGGTTCACTCTGGTTAATCCAG +
Preference number: 3 (lower is better)
Translates to: PEGCGQHGAWPT*RFTMGSLWLIQ
Trigger: CTGGATTAACCAGAGTGAACCCATTGTAAATCTCCATGTAGGCCAAGCTCCGTGCTGCCCACAGCCTTCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
3UTR-3UTR CAA 90 bp GAGGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGACAGCAGATCAGATTaGTTGAGCAGCAGCAGGAGG +
Preference number: 3 (lower is better)
Translates to: EEVSTVRSLIHVSLLTVEDSRSD*LSSSRR
Trigger: CCTCCTGCTGCTGCTCAACAAATCTGATCTGCTGTC...CTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
3UTR-3UTR CAA 90 bp TTTGCCATCTTGGATCATGACCTTGTGGGAACTCCGAGGCTGAGTCCCAGGCTCATTTGTAGCTGTTGGTaGTCTCCTTCCACCATGTGG +
Preference number: 3 (lower is better)
Translates to: FAILDHDLVGTPRLSPRLICSCW*SPSTMW
Trigger: CCACATGGTGGAAGGAGACAACCAACAGCTACAAAT...GAGCCTGGGACTCAGCCTCGGAGTTCCCACAAGGTCATGATCCAAGATGGCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
3UTR-3UTR CAA 90 bp GAGTTCCAGGACAGCCAGGACTACACAGAGAAGCCCTGTCGTGGCTCAGCATATAAGCACAGGAGATACTaGGATGAAACTGTCACAGCA +
Preference number: 3 (lower is better)
Translates to: EFQDSQDYTEKPCRGSAYKHRRY*DETVTA
Trigger: TGCTGTGACAGTTTCATCCAAGTATCTCCTGTGCTT...ATATGCTGAGCCACGACAGGGCTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR TCA 72 bp ACAGGTGCTCTCTCAGTCTCAGGTCTAACTCCAGTTTaGTCTATACAACCAGACTGGCCTCTCACAGGCCTA +
Preference number: 3 (lower is better)
Translates to: TGALSVSGLTPV*SIQPDWPLTGL
Trigger: TAGGCCTGTGAGAGGCCAGTCTGGTTGTATAGATCAAACTGGAGTTAGACCTGAGACTGAGAGAGCACCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
3UTR GCA 72 bp ACACAGAGAAGCCCTGTCGTGGCTCAGCATATAACATaGAACGGGTTTCACATCCAGCACTACATCATTCAG +
Preference number: 3 (lower is better)
Translates to: TQRSPVVAQHIT*NGFHIQHYIIQ
Trigger: CTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTGAGCCACGACAGGGCTTCTCTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR CAA 90 bp ATAACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCAAGAAGCACAGGAGATACTaGGATGAAACTGTCACAGCA +
Preference number: 3 (lower is better)
Translates to: ITCNGFHIQHYIIQALGKKHRRY*DETVTA
Trigger: TGCTGTGACAGTTTCATCCAAGTATCTCCTGTGCTT...CTTGCCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR-3UTR CAA 90 bp CCTTTGGTAATTAAAAATGAAATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGAAGCACAGGAGATACTaGGATGAAACTGTCACAGCA +
Preference number: 3 (lower is better)
Translates to: PLVIKNEMPLIPALGRQRKHRRY*DETVTA
Trigger: TGCTGTGACAGTTTCATCCAAGTATCTCCTGTGCTT...CCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATTTCATTTTTAATTACCAAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
3UTR CCA 72 bp TCGGCCATGATTCTCTTATCTGACTTTCTGACACTGTaGGAAGACTATACTGGAATCTTCCACAAGTTCACT +
Preference number: 3 (lower is better)
Translates to: SAMILLSDFLTL*EDYTGIFHKFT
Trigger: AGTGAACTTGTGGAAGATTCCAGTATAGTCTTCCCACAGTGTCAGAAAGTCAGATAAGAGAATCATGGCCGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
CDS-3UTR TCA 90 bp TGCTCCAGCCTGTGGCGGGCCCTGCGCACACCCTCCTGCTCAACAGCGCCCACGGCTCCTGGAGCGCCGTaGGGCTGCGGAGCGCGAGCC +
Preference number: 4 (lower is better)
Translates to: CSSLWRALRTPSCSTAPTAPGAP*GCGARA
Trigger: GGCTCGCGCTCCGCAGCCTCACGGCGCTCCAGGAGC...CGTGGGCGCTGTTGAGCAGGAGGGTGTGCGCAGGGCCCGCCACAGGCTGGAGCA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
CDS-3UTR CCA 90 bp GCGCACACCCTCCTGCTCAACAGCGCCCACGCCTTCCCGGAGCCCTGCAGTGTCTGCGGATCACTGCGATaGCGCAGCGTCCCTGGCCGG +
Preference number: 4 (lower is better)
Translates to: AHTLLLNSAHAFPEPCSVCGSLR*RSVPGR
Trigger: CCGGCCAGGGACGCTGCGCCATCGCAGTGATCCGCA...GACACTGCAGGGCTCCGGGAAGGCGTGGGCGCTGTTGAGCAGGAGGGTGTGCGC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
CDS-3UTR GCA 90 bp GTACTGGTGCCTGACCCGGGTCAAGAGCGGTGGTCCTGTGGATGGGTCCCCACAGGCGCAGGCAGGCTCTaGGGGCAGGAGGCGGCTCCT +
Preference number: 4 (lower is better)
Translates to: VLVPDPGQERWSCGWVPTGAGRL*GQEAAP
Trigger: AGGAGCCGCCTCCTGCCCGCAGAGCCTGCCTGCGCC...TGTGGGGACCCATCCACAGGACCACCGCTCTTGACCCGGGTCAGGCACCAGTAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
CDS-3UTR GCA 90 bp AGCAAGACAGGGAACCCAGCCAAGTCCACGGGAGTCTCCAGCACGTCACGGGTGGGCGCAGGCAGGCTCTaGGGGCAGGAGGCGGCTCCT +
Preference number: 4 (lower is better)
Translates to: SKTGNPAKSTGVSSTSRVGAGRL*GQEAAP
Trigger: AGGAGCCGCCTCCTGCCCGCAGAGCCTGCCTGCGCC...CACCCGTGACGTGCTGGAGACTCCCGTGGACTTGGCTGGGTTCCCTGTCTTGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
CDS-3UTR CCA 90 bp CAGCGCCCACGCCTTCCCGGAGCCCTGCAGTGTCGCTCAGCAAGACAGGGAACCCAGCCCTGGCAGAGCTaGCTCAGTTCCCCATCCAGC +
Preference number: 4 (lower is better)
Translates to: QRPRLPGALQCRSARQGTQPWQS*LSSPSS
Trigger: GCTGGATGGGGAACTGAGCCAGCTCTGCCAGGGCTG...GGTTCCCTGTCTTGCTGAGCGACACTGCAGGGCTCCGGGAAGGCGTGGGCGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
CDS-3UTR CCA 90 bp GCGCACACCCTCCTGCTCAACAGCGCCCACGCCTTCCCGGAGCCCTGCAGTGTCAGGCTCAGCTTGCCATaGGCAAATGCCCTCCTGGTG +
Preference number: 4 (lower is better)
Translates to: AHTLLLNSAHAFPEPCSVRLSLP*ANALLV
Trigger: CACCAGGAGGGCATTTGCCCATGGCAAGCTGAGCCT...GACACTGCAGGGCTCCGGGAAGGCGTGGGCGCTGTTGAGCAGGAGGGTGTGCGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
CDS-3UTR CCA 90 bp CGGGAGTCTCCAGCACGTCACGGGTGGTCCCAGGCTCTGGGGACACGATGGACACTAGCATCTCGCAGGTaGGAACCCAGCGCCACCTCC +
Preference number: 4 (lower is better)
Translates to: RESPARHGWSQALGTRWTLASRR*EPSATS
Trigger: GGAGGTGGCGCTGGGTTCCCACCTGCGAGATGCTAG...TGTCCATCGTGTCCCCAGAGCCTGGGACCACCCGTGACGTGCTGGAGACTCCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095259.10
CDS-3UTR TCA 90 bp GGGTTCCAGAAGGCTGTGGGCAGCACGGAGCTTGGCCTACATGGAGATTTACAAGCTCCTGGAGCGCCGTaGGGCTGCGGAGCGCGAGCC +
Preference number: 4 (lower is better)
Translates to: GFQKAVGSTELGLHGDLQAPGAP*GCGARA
Trigger: GGCTCGCGCTCCGCAGCCTCACGGCGCTCCAGGAGC...TTGTAAATCTCCATGTAGGCCAAGCTCCGTGCTGCCCACAGCCTTCTGGAACCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
CDS-3UTR TCA 90 bp AGGGCCTGCAGGAGGCTGTCCATCCCGGCTCCCGTGTGGCAGGACAGGAGCAGGATGCCCTCTTCTTGGTaGGAGTCTTTGCCCAGCCCT +
Preference number: 4 (lower is better)
Translates to: RACRRLSIPAPVWQDRSRMPSSW*ESLPSP
Trigger: AGGGCTGGGCAAAGACTCTCACCAAGAAGAGGGCAT...CCTGCTCCTGTCCTGCCACACGGGAGCCGGGATGGACAGCCTCCTGCAGGCCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
CDS-3UTR GCA 90 bp CGGTCTTCAGGGCCTGCAGGAGGCTGTCCATCCCGGCTCCCGTGTGGCAGGACACAGTCAGGCTCAGCTTaGCATGGGCAAATGCCCTCC +
Preference number: 4 (lower is better)
Translates to: RSSGPAGGCPSRLPCGRTQSGSA*HGQMPS
Trigger: GGAGGGCATTTGCCCATGGCAAGCTGAGCCTGACTG...TGTCCTGCCACACGGGAGCCGGGATGGACAGCCTCCTGCAGGCCCTGAAGACCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
CDS-3UTR GCA 90 bp TCAACAGCGCCCACGCCTTCCCGGAGCCCTGCAGTGTCGCTCAGCAAGACAGGGAGTTCCCCATCCAGCTaGCTCAGAGCCTGTCGACGC +
Preference number: 4 (lower is better)
Translates to: STAPTPSRSPAVSLSKTGSSPSS*LRACRR
Trigger: GCGTCGACAGGCTCTGAGGCAGCTGGATGGGGAACT...CCCTGTCTTGCTGAGCGACACTGCAGGGCTCCGGGAAGGCGTGGGCGCTGTTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
CDS-3UTR CCA 90 bp GGCATCCAGGCAGCCCTGGAGGTGGTACTGGTGCCTGACCCGGGTCAAGAGCGGAGGCTCAGCTTGCCATaGGCAAATGCCCTCCTGGTG +
Preference number: 4 (lower is better)
Translates to: GIQAALEVVLVPDPGQERRLSLP*ANALLV
Trigger: CACCAGGAGGGCATTTGCCCATGGCAAGCTGAGCCT...CCGCTCTTGACCCGGGTCAGGCACCAGTACCACCTCCAGGGCTGCCTGGATGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
CDS-3UTR TCA 90 bp GTCCTGTGGATGGGTCCCCACACACCGCAGCCAGCTCGGTCTTCAGGGCCTGCATCTCTGTCCGCTTGGTaGGAGTCTTTGCCCAGCCCT +
Preference number: 4 (lower is better)
Translates to: VLWMGPHTPQPARSSGPASLSAW*ESLPSP
Trigger: AGGGCTGGGCAAAGACTCTCACCAAGCGGACAGAGA...TGCAGGCCCTGAAGACCGAGCTGGCTGCGGTGTGTGGGGACCCATCCACAGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095259.10
CDS-3UTR GCA 90 bp TCCAGAAGGCTGTGGGCAGCACGGAGCTTGGCCTACATGGAGATTTACAATGGGGGCGCAGGCAGGCTCTaGGGGCAGGAGGCGGCTCCT +
Preference number: 4 (lower is better)
Translates to: SRRLWAARSLAYMEIYNGGAGRL*GQEAAP
Trigger: AGGAGCCGCCTCCTGCCCGCAGAGCCTGCCTGCGCC...CCCATTGTAAATCTCCATGTAGGCCAAGCTCCGTGCTGCCCACAGCCTTCTGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
CDS-3UTR GCA 90 bp GGGAGTCTCCAGCACGTCACGGGTGGTCCCAGGCTCTGGGGACACGATGGACACCAGTCAGGCTCAGCTTaGCATGGGCAAATGCCCTCC +
Preference number: 4 (lower is better)
Translates to: GSLQHVTGGPRLWGHDGHQSGSA*HGQMPS
Trigger: GGAGGGCATTTGCCCATGGCAAGCTGAGCCTGACTG...GTGTCCATCGTGTCCCCAGAGCCTGGGACCACCCGTGACGTGCTGGAGACTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
CDS-3UTR CCA 90 bp CAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCAGTGCCAGCACGTCACGGGTaGTCCCAGGCTCTGGGGACA +
Preference number: 4 (lower is better)
Translates to: QIPDPCLSPHCGGLQTPVPARHG*SQALGT
Trigger: TGTCCCCAGAGCCTGGGACCACCCGTGACGTGCTGG...CACTGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp AGCAAGACAGGGAACCCAGCCAAGTCCACGGGAGTCTCCAGCACGTCACGGGTGTCACCCGTGAAACTCTaGGGTCCTGGGAACCAGAGG +
Preference number: 4 (lower is better)
Translates to: SKTGNPAKSTGVSSTSRVSPVKL*GPGNQR
Trigger: CCTCTGGTTCCCAGGACCCCAGAGTTTCACGGGTGA...CACCCGTGACGTGCTGGAGACTCCCGTGGACTTGGCTGGGTTCCCTGTCTTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
CDS-3UTR CCA 90 bp TGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCAAGGCAGCCCTGGAGGTaGTACTGGTGCCTGACCCGG +
Preference number: 4 (lower is better)
Translates to: CQIPDPCLSPHCGGLQTPRQPWR*YWCLTR
Trigger: CCGGGTCAGGCACCAGTACCACCTCCAGGGCTGCCT...TGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
3UTR CAA 72 bp TCGCAGGCTGGGGCATTAGCAGACAGCAGATCAGATTaGTTGAGCAGCAGCAGGAGGCGCTGCCCACCGCTG +
Preference number: 4 (lower is better)
Translates to: SQAGALADSRSD*LSSSRRRCPPL
Trigger: CAGCGGTGGGCAGCGCCTCCTGCTGCTGCTCAACAAATCTGATCTGCTGTCTGCTAATGCCCCAGCCTGCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
CDS-3UTR GCA 90 bp CCTGTCGTGGCTCAGCATATAACATGCAACGGGTTTCACATCCAGCACTACATCGGCGCAGGCAGGCTCTaGGGGCAGGAGGCGGCTCCT +
Preference number: 4 (lower is better)
Translates to: PVVAQHITCNGFHIQHYIGAGRL*GQEAAP
Trigger: AGGAGCCGCCTCCTGCCCGCAGAGCCTGCCTGCGCC...GATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTGAGCCACGACAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp CAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCAGTGAGTTCCCCATCCAGCTaGCTCAGAGCCTGTCGACGC +
Preference number: 4 (lower is better)
Translates to: QIPDPCLSPHCGGLQTPVSSPSS*LRACRR
Trigger: GCGTCGACAGGCTCTGAGGCAGCTGGATGGGGAACT...CACTGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp TGTGGGCAGCACGGAGCTTGGCCTACATGGAGATTTACAATGGGTTCACTCTGGTGCGGATCACTGCGATaGCGCAGCGTCCCTGGCCGG +
Preference number: 4 (lower is better)
Translates to: CGQHGAWPTWRFTMGSLWCGSLR*RSVPGR
Trigger: CCGGCCAGGGACGCTGCGCCATCGCAGTGATCCGCA...CCAGAGTGAACCCATTGTAAATCTCCATGTAGGCCAAGCTCCGTGCTGCCCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
CDS-3UTR CCA 90 bp TGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCACTAGCATCTCGCAGGTaGGAACCCAGCGCCACCTCC +
Preference number: 4 (lower is better)
Translates to: CQIPDPCLSPHCGGLQTPLASRR*EPSATS
Trigger: GGAGGTGGCGCTGGGTTCCCACCTGCGAGATGCTAG...TGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp TCCAGAAGGCTGTGGGCAGCACGGAGCTTGGCCTACATGGAGATTTACAATGGGCCAGCACGTCACGGGTaGTCCCAGGCTCTGGGGACA +
Preference number: 4 (lower is better)
Translates to: SRRLWAARSLAYMEIYNGPARHG*SQALGT
Trigger: TGTCCCCAGAGCCTGGGACCACCCGTGACGTGCTGG...CCCATTGTAAATCTCCATGTAGGCCAAGCTCCGTGCTGCCCACAGCCTTCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
CDS-3UTR CCA 90 bp TGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCACCAGGAAGCTGCAGCTaGATGAGGAGGCCAGGTCGG +
Preference number: 4 (lower is better)
Translates to: CQIPDPCLSPHCGGLQTPPGSCS*MRRPGR
Trigger: CCGACCTGGCCTCCTCATCCAGCTGCAGCTTCCTGG...TGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp TTTGCCATCTTGGATCATGACCTTGTGGGAACTCCGAGGCTGAGTCCCAGGCTCAGGCAGCCCTGGAGGTaGTACTGGTGCCTGACCCGG +
Preference number: 4 (lower is better)
Translates to: FAILDHDLVGTPRLSPRLRQPWR*YWCLTR
Trigger: CCGGGTCAGGCACCAGTACCACCTCCAGGGCTGCCT...GAGCCTGGGACTCAGCCTCGGAGTTCCCACAAGGTCATGATCCAAGATGGCAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
3UTR CAA 72 bp TCCAGTGACCACAACATTTGCCCCCGAGAGGAGCCTTaGTCCACGCCTAGCATCTCGCAGGTGGGAACCCAG +
Preference number: 4 (lower is better)
Translates to: SSDHNICPREEP*STPSISQVGTQ
Trigger: CTGGGTTCCCACCTGCGAGATGCTAGGCGTGGACAAAGGCTCCTCTCGGGGGCAAATGTTGTGGTCACTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
CDS-3UTR TCA 90 bp TGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCAAGGCCAGAGCCTTGGTaGGAGTCTTTGCCCAGCCCT +
Preference number: 4 (lower is better)
Translates to: CQIPDPCLSPHCGGLQTPRPEPW*ESLPSP
Trigger: AGGGCTGGGCAAAGACTCTCACCAAGGCTCTGGCCT...TGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp TGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCAAGAATGATGTCAGCCTaGTCCAGCCTGTGGCGGGCC +
Preference number: 4 (lower is better)
Translates to: CQIPDPCLSPHCGGLQTPRMMSA*SSLWRA
Trigger: GGCCCGCCACAGGCTGGAGCAGGCTGACATCATTCT...TGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp GAGGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGTGCGGATCACTGCGATaGCGCAGCGTCCCTGGCCGG +
Preference number: 4 (lower is better)
Translates to: EEVSTVRSLIHVSLLTVECGSLR*RSVPGR
Trigger: CCGGCCAGGGACGCTGCGCCATCGCAGTGATCCGCA...CTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp TTTGCCATCTTGGATCATGACCTTGTGGGAACTCCGAGGCTGAGTCCCAGGCTCCAGCCCTGGCAGAGCTaGCTCAGTTCCCCATCCAGC +
Preference number: 4 (lower is better)
Translates to: FAILDHDLVGTPRLSPRLQPWQS*LSSPSS
Trigger: GCTGGATGGGGAACTGAGCCAGCTCTGCCAGGGCTG...GAGCCTGGGACTCAGCCTCGGAGTTCCCACAAGGTCATGATCCAAGATGGCAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp TGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCAGTCTTTGCCCAGCCCTaGCAGAGCTGGCTCAGTTCC +
Preference number: 4 (lower is better)
Translates to: CQIPDPCLSPHCGGLQTPVFAQP*QSWLSS
Trigger: GGAACTGAGCCAGCTCTGCCAGGGCTGGGCAAAGAC...TGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp GTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCCTAGCATCTCGCAGGTaGGAACCCAGCGCCACCTCC +
Preference number: 4 (lower is better)
Translates to: VSTVRSLIHVSLLTVEGCLASRR*EPSATS
Trigger: GGAGGTGGCGCTGGGTTCCCACCTGCGAGATGCTAG...GCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp TTTGCCATCTTGGATCATGACCTTGTGGGAACTCCGAGGCTGAGTCCCAGGCTCGGTGGTCCCAGGCTCTaGGGACACGATGGACACTGG +
Preference number: 4 (lower is better)
Translates to: FAILDHDLVGTPRLSPRLGGPRL*GHDGHW
Trigger: CCAGTGTCCATCGTGTCCCCAGAGCCTGGGACCACC...GAGCCTGGGACTCAGCCTCGGAGTTCCCACAAGGTCATGATCCAAGATGGCAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR TCA 90 bp TTGATCTATACAACCAGACTGGCCTCTCACAGGCCTAGAACTTTCTCTAAAGGAGCTCCTGGAGCGCCGTaGGGCTGCGGAGCGCGAGCC +
Preference number: 4 (lower is better)
Translates to: LIYTTRLASHRPRTFSKGAPGAP*GCGARA
Trigger: GGCTCGCGCTCCGCAGCCTCACGGCGCTCCAGGAGC...TCCTTTAGAGAAAGTTCTAGGCCTGTGAGAGGCCAGTCTGGTTGTATAGATCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
CDS-3UTR TCA 90 bp GAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCCCAGCACCCCCAGAATaGTGTCAGCCTGCTCCAGCC +
Preference number: 4 (lower is better)
Translates to: EVSTVRSLIHVSLLTVEGPAPPE*CQPAPA
Trigger: GGCTGGAGCAGGCTGACATCATTCTGGGGGTGCTGG...GCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR TCA 90 bp GGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCAGGACAGGAGCAGGTaGGGAGGCAGGGCTATGTCG +
Preference number: 4 (lower is better)
Translates to: GSIHCQIPDPCLSPHCGGQDRSR*GGRAMS
Trigger: CGACATAGCCCTGCCTCCTCACCTGCTCCTGTCCTG...CCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp TGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCACAGTCAGGCTCAGCTTaGCATGGGCAAATGCCCTCC +
Preference number: 4 (lower is better)
Translates to: CQIPDPCLSPHCGGLQTPQSGSA*HGQMPS
Trigger: GGAGGGCATTTGCCCATGGCAAGCTGAGCCTGACTG...TGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp CTTGCCCACACAGAAGTCCTGGAAGATGAGATCCAGGATCTCCTCCGTTCCTCCAGTTCCCCATCCAGCTaGCTCAGAGCCTGTCGACGC +
Preference number: 4 (lower is better)
Translates to: LAHTEVLEDEIQDLLRSSSSPSS*LRACRR
Trigger: GCGTCGACAGGCTCTGAGGCAGCTGGATGGGGAACT...GGAGGAACGGAGGAGATCCTGGATCTCATCTTCCAGGACTTCTGTGTGGGCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
CDS-3UTR GCA 90 bp GTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGAATGATGTCAGCCTaGTCCAGCCTGTGGCGGGCC +
Preference number: 4 (lower is better)
Translates to: VSTVRSLIHVSLLTVEGCRMMSA*SSLWRA
Trigger: GGCCCGCCACAGGCTGGAGCAGGCTGACATCATTCT...GCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp TTTGCCATCTTGGATCATGACCTTGTGGGAACTCCGAGGCTGAGTCCCAGGCTCGTCTTTGCCCAGCCCTaGCAGAGCTGGCTCAGTTCC +
Preference number: 4 (lower is better)
Translates to: FAILDHDLVGTPRLSPRLVFAQP*QSWLSS
Trigger: GGAACTGAGCCAGCTCTGCCAGGGCTGGGCAAAGAC...GAGCCTGGGACTCAGCCTCGGAGTTCCCACAAGGTCATGATCCAAGATGGCAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp GAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCCTAGCATCTCGCAGGTaGGAACCCAGCGCCACCTCC +
Preference number: 4 (lower is better)
Translates to: EVSTVRSLIHVSLLTVEGLASRR*EPSATS
Trigger: GGAGGTGGCGCTGGGTTCCCACCTGCGAGATGCTAG...GCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp GAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCCCAGGAAGCTGCAGCTaGATGAGGAGGCCAGGTCGG +
Preference number: 4 (lower is better)
Translates to: EVSTVRSLIHVSLLTVEGPGSCS*MRRPGR
Trigger: CCGACCTGGCCTCCTCATCCAGCTGCAGCTTCCTGG...GCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp GGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGGCATCCAGGCAGCCCTaGAGGTGGTACTGGTGCCTG +
Preference number: 4 (lower is better)
Translates to: GSIHCQIPDPCLSPHCGGASRQP*RWYWCL
Trigger: CAGGCACCAGTACCACCTCCAGGGCTGCCTGGATGC...CCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR TCA 90 bp TCCAGAAGGCTGTGGGCAGCACGGAGCTTGGCCTACATGGAGATTTACAATGGGCATTGGGAGGTCCAGTaGCCACAACATTTGCCCCCG +
Preference number: 4 (lower is better)
Translates to: SRRLWAARSLAYMEIYNGHWEVQ*PQHLPP
Trigger: CGGGGGCAAATGTTGTGGTCACTGGACCTCCCAATG...CCCATTGTAAATCTCCATGTAGGCCAAGCTCCGTGCTGCCCACAGCCTTCTGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
CDS-3UTR GCA 90 bp GGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGAGTTCCCCATCCAGCTaGCTCAGAGCCTGTCGACGC +
Preference number: 4 (lower is better)
Translates to: GSIHCQIPDPCLSPHCGGSSPSS*LRACRR
Trigger: GCGTCGACAGGCTCTGAGGCAGCTGGATGGGGAACT...CCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp GAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCAGTTCCCCATCCAGCTaGCTCAGAGCCTGTCGACGC +
Preference number: 4 (lower is better)
Translates to: EVSTVRSLIHVSLLTVEGSSPSS*LRACRR
Trigger: GCGTCGACAGGCTCTGAGGCAGCTGGATGGGGAACT...GCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp CAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCAGTGGTAGATTCACCAGACTaGTCTTGCCCGCATTGGGAG +
Preference number: 4 (lower is better)
Translates to: QIPDPCLSPHCGGLQTPVVDSPD*SCPHWE
Trigger: CTCCCAATGCGGGCAAGAGCAGTCTGGTGAATCTAC...CACTGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp ATTGATGGTGTATGTGCACGTCACAGCACGTGTGCCGGTCGGAGGACAATTTGTTCGGTCTTCAGGGCCTaGAGGAGGCTGTCCATCCCG +
Preference number: 4 (lower is better)
Translates to: IDGVCARHSTCAGRRTICSVFRA*RRLSIP
Trigger: CGGGATGGACAGCCTCCTGCAGGCCCTGAAGACCGA...ACAAATTGTCCTCCGACCGGCACACGTGCTGTGACGTGCACATACACCATCAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
CDS-3UTR CCA 90 bp TTTGCCATCTTGGATCATGACCTTGTGGGAACTCCGAGGCTGAGTCCCAGGCTCTCACCCGTGAAACTCTaGGGTCCTGGGAACCAGAGG +
Preference number: 4 (lower is better)
Translates to: FAILDHDLVGTPRLSPRLSPVKL*GPGNQR
Trigger: CCTCTGGTTCCCAGGACCCCAGAGTTTCACGGGTGA...GAGCCTGGGACTCAGCCTCGGAGTTCCCACAAGGTCATGATCCAAGATGGCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
CDS-3UTR CCA 90 bp TTTGCCATCTTGGATCATGACCTTGTGGGAACTCCGAGGCTGAGTCCCAGGCTCAGGCTCAGCTTGCCATaGGCAAATGCCCTCCTGGTG +
Preference number: 4 (lower is better)
Translates to: FAILDHDLVGTPRLSPRLRLSLP*ANALLV
Trigger: CACCAGGAGGGCATTTGCCCATGGCAAGCTGAGCCT...GAGCCTGGGACTCAGCCTCGGAGTTCCCACAAGGTCATGATCCAAGATGGCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp GAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCGTCTTTGCCCAGCCCTaGCAGAGCTGGCTCAGTTCC +
Preference number: 4 (lower is better)
Translates to: EVSTVRSLIHVSLLTVEGVFAQP*QSWLSS
Trigger: GGAACTGAGCCAGCTCTGCCAGGGCTGGGCAAAGAC...GCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp CTCCTTCCACCATGTGGCTCTGGGAGCAAATTCAGGTCACGAAGCTTTCAAGTGCCCTGGAGGTGGTACTaGTGCCTGACCCGGGTCAAG +
Preference number: 4 (lower is better)
Translates to: LLPPCGSGSKFRSRSFQVPWRWY*CLTRVK
Trigger: CTTGACCCGGGTCAGGCACCAGTACCACCTCCAGGG...CACTTGAAAGCTTCGTGACCTGAATTTGCTCCCAGAGCCACATGGTGGAAGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
CDS-3UTR CCA 90 bp TGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCATCACCCGTGAAACTCTaGGGTCCTTCTGGGAACCAG +
Preference number: 4 (lower is better)
Translates to: CQIPDPCLSPHCGGLQTPSPVKL*GPSGNQ
Trigger: CTGGTTCCCAGAAGGACCCCAGAGTTTCACGGGTGA...TGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168847.8
3UTR CAA 72 bp TGGCTGAGTAGATTCACCAGACTGCTCTTGCCCGCATaGGGAGGTCCAGTGACCACAACATTTGCCCCCGAG +
Preference number: 4 (lower is better)
Translates to: WLSRFTRLLLPA*GGPVTTTFAPE
Trigger: CTCGGGGGCAAATGTTGTGGTCACTGGACCTCCCAATGCGGGCAAGAGCAGTCTGGTGAATCTACTCAGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
CDS-3UTR TCA 90 bp ATTGATGGTGTATGTGCACGTCACAGCACGTGTGCCGGTCGGAGGACAATTTGTAGGCCAGAGCCTTGGTaGGAGTCTTTGCCCAGCCCT +
Preference number: 4 (lower is better)
Translates to: IDGVCARHSTCAGRRTICRPEPW*ESLPSP
Trigger: AGGGCTGGGCAAAGACTCTCACCAAGGCTCTGGCCT...ACAAATTGTCCTCCGACCGGCACACGTGCTGTGACGTGCACATACACCATCAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
CDS-3UTR TCA 90 bp GGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCATTGGGAGGTCCAGTaGCCACAACATTTGCCCCCG +
Preference number: 4 (lower is better)
Translates to: GSIHCQIPDPCLSPHCGGHWEVQ*PQHLPP
Trigger: CGGGGGCAAATGTTGTGGTCACTGGACCTCCCAATG...CCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR TCA 90 bp ACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCAAGGTGCCAGCACCCCCAGAATaGTGTCAGCCTGCTCCAGCC +
Preference number: 4 (lower is better)
Translates to: TCNGFHIQHYIIQALGKVPAPPE*CQPAPA
Trigger: GGCTGGAGCAGGCTGACATCATTCTGGGGGTGCTGG...CACCTTGCCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp CCTTTGGTAATTAAAAATGAAATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGGGCGCAGGCAGGCTCTaGGGGCAGGAGGCGGCTCCT +
Preference number: 4 (lower is better)
Translates to: PLVIKNEMPLIPALGRQRGAGRL*GQEAAP
Trigger: AGGAGCCGCCTCCTGCCCGCAGAGCCTGCCTGCGCC...CCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATTTCATTTTTAATTACCAAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp GAGTTCCAGGACAGCCAGGACTACACAGAGAAGCCCTGTCGTGGCTCAGCATATCTTGCCATGGGCAAATaGCCTCCTGGTGAACTCTCC +
Preference number: 4 (lower is better)
Translates to: EFQDSQDYTEKPCRGSAYLAMGK*PPGELS
Trigger: GGAGAGTTCACCAGGAGGGCATTTGCCCATGGCAAG...ATATGCTGAGCCACGACAGGGCTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp GGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCAGTGTCCAGGAAGCTaGAGCTGGATGAGGAGGCCA +
Preference number: 4 (lower is better)
Translates to: GSIHCQIPDPCLSPHCGGQCPGS*SWMRRP
Trigger: TGGCCTCCTCATCCAGCTGCAGCTTCCTGGACACTG...CCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp GCATATAACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGTGCGGATCACTGCGATaGCGCAGCGTCCCTGGCCGG +
Preference number: 4 (lower is better)
Translates to: AYNMQRVSHPALHHSGTWCGSLR*RSVPGR
Trigger: CCGGCCAGGGACGCTGCGCCATCGCAGTGATCCGCA...CCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp ATTGATGGTGTATGTGCACGTCACAGCACGTGTGCCGGTCGGAGGACAATTTGTGTCTTTGCCCAGCCCTaGCAGAGCTGGCTCAGTTCC +
Preference number: 4 (lower is better)
Translates to: IDGVCARHSTCAGRRTICVFAQP*QSWLSS
Trigger: GGAACTGAGCCAGCTCTGCCAGGGCTGGGCAAAGAC...ACAAATTGTCCTCCGACCGGCACACGTGCTGTGACGTGCACATACACCATCAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
CDS-3UTR CCA 90 bp GAGGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGTCTTTGCCCAGCCCTaGCAGAGCTGGCTCAGTTCC +
Preference number: 4 (lower is better)
Translates to: EEVSTVRSLIHVSLLTVEVFAQP*QSWLSS
Trigger: GGAACTGAGCCAGCTCTGCCAGGGCTGGGCAAAGAC...CTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp AAGCCCTGTCGTGGCTCAGCATATAACATGCAACGGGTTTCACATCCAGCACTAGGTGGTCCCAGGCTCTaGGGACACGATGGACACTGG +
Preference number: 4 (lower is better)
Translates to: KPCRGSAYNMQRVSHPALGGPRL*GHDGHW
Trigger: CCAGTGTCCATCGTGTCCCCAGAGCCTGGGACCACC...TAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTGAGCCACGACAGGGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp CCTGTCGTGGCTCAGCATATAACATGCAACGGGTTTCACATCCAGCACTACATCCCCTGGAGGTGGTACTaGTGCCTGACCCGGGTCAAG +
Preference number: 4 (lower is better)
Translates to: PVVAQHITCNGFHIQHYIPWRWY*CLTRVK
Trigger: CTTGACCCGGGTCAGGCACCAGTACCACCTCCAGGG...GATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTGAGCCACGACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp CCTGTCGTGGCTCAGCATATAACATGCAACGGGTTTCACATCCAGCACTACATCGCATCCAGGCAGCCCTaGAGGTGGTACTGGTGCCTG +
Preference number: 4 (lower is better)
Translates to: PVVAQHITCNGFHIQHYIASRQP*RWYWCL
Trigger: CAGGCACCAGTACCACCTCCAGGGCTGCCTGGATGC...GATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTGAGCCACGACAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR TCA 90 bp GAGGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGCATTGGGAGGTCCAGTaGCCACAACATTTGCCCCCG +
Preference number: 4 (lower is better)
Translates to: EEVSTVRSLIHVSLLTVEHWEVQ*PQHLPP
Trigger: CGGGGGCAAATGTTGTGGTCACTGGACCTCCCAATG...CTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp CCTTCCACCATGTGGCTCTGGGAGCAAATTCAGGTCACGAAGCTTTCAAGTGTCCAGTCAGGCTCAGCTTaGCATGGGCAAATGCCCTCC +
Preference number: 4 (lower is better)
Translates to: PSTMWLWEQIQVTKLSSVQSGSA*HGQMPS
Trigger: GGAGGGCATTTGCCCATGGCAAGCTGAGCCTGACTG...GACACTTGAAAGCTTCGTGACCTGAATTTGCTCCCAGAGCCACATGGTGGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
CDS-3UTR GCA 90 bp GAGTTCCAGGACAGCCAGGACTACACAGAGAAGCCCTGTCGTGGCTCAGCATATGTAGATTCACCAGACTaGTCTTGCCCGCATTGGGAG +
Preference number: 4 (lower is better)
Translates to: EFQDSQDYTEKPCRGSAYVDSPD*SCPHWE
Trigger: CTCCCAATGCGGGCAAGAGCAGTCTGGTGAATCTAC...ATATGCTGAGCCACGACAGGGCTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp ACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCAAGGTGAGAATGATGTCAGCCTaGTCCAGCCTGTGGCGGGCC +
Preference number: 4 (lower is better)
Translates to: TCNGFHIQHYIIQALGKVRMMSA*SSLWRA
Trigger: GGCCCGCCACAGGCTGGAGCAGGCTGACATCATTCT...CACCTTGCCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp ATTGATGGTGTATGTGCACGTCACAGCACGTGTGCCGGTCGGAGGACAATTTGTTCACCCGTGAAACTCTaGGGTCCTGGGAACCAGAGG +
Preference number: 4 (lower is better)
Translates to: IDGVCARHSTCAGRRTICSPVKL*GPGNQR
Trigger: CCTCTGGTTCCCAGGACCCCAGAGTTTCACGGGTGA...ACAAATTGTCCTCCGACCGGCACACGTGCTGTGACGTGCACATACACCATCAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
CDS-3UTR CCA 90 bp GTCGTGGCTCAGCATATAACATGCAACGGGTTTCACATCCAGCACTACATCATTAGGCAGCCCTGGAGGTaGTACTGGTGCCTGACCCGG +
Preference number: 4 (lower is better)
Translates to: VVAQHITCNGFHIQHYIIRQPWR*YWCLTR
Trigger: CCGGGTCAGGCACCAGTACCACCTCCAGGGCTGCCT...AATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTGAGCCACGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR TCA 90 bp GTCACAGCAATACTCATTCCAGGTACCACATGCTACTACACAAGTAAAAATTTAGCTCCTGGAGCGCCGTaGGGCTGCGGAGCGCGAGCC +
Preference number: 4 (lower is better)
Translates to: VTAILIPGTTCYYTSKNLAPGAP*GCGARA
Trigger: GGCTCGCGCTCCGCAGCCTCACGGCGCTCCAGGAGC...TAAATTTTTACTTGTGTAGTAGCATGTGGTACCTGGAATGAGTATTGCTGTGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
CDS-3UTR TCA 90 bp ACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCAAGGTGCATTGGGAGGTCCAGTaGCCACAACATTTGCCCCCG +
Preference number: 4 (lower is better)
Translates to: TCNGFHIQHYIIQALGKVHWEVQ*PQHLPP
Trigger: CGGGGGCAAATGTTGTGGTCACTGGACCTCCCAATG...CACCTTGCCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000168847.8
CDS-3UTR TCA 90 bp GCATATAACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCAGGACAGGAGCAGGTaGGGAGGCAGGGCTATGTCG +
Preference number: 4 (lower is better)
Translates to: AYNMQRVSHPALHHSGTWQDRSR*GGRAMS
Trigger: CGACATAGCCCTGCCTCCTCACCTGCTCCTGTCCTG...CCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR TCA 90 bp CTAAGGAAAGGACCTCATGGCTGTGAAGGACTTTGCGGGTTCCAGAAGGCTGTGAGAAGTCCTGGAAGATaGGATCCAGGATCTCCTCCG +
Preference number: 4 (lower is better)
Translates to: LRKGPHGCEGLCGFQKAVRSPGR*DPGSPP
Trigger: CGGAGGAGATCCTGGATCTCATCTTCCAGGACTTCT...CACAGCCTTCTGGAACCCGCAAAGTCCTTCACAGCCATGAGGTCCTTTCCTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
CDS-3UTR GCA 90 bp TGGGCAGCACGGAGCTTGGCCTACATGGAGATTTACAATGGGTTCACTCTGGTTCTTGCCATGGGCAAATaGCCTCCTGGTGAACTCTCC +
Preference number: 4 (lower is better)
Translates to: WAARSLAYMEIYNGFTLVLAMGK*PPGELS
Trigger: GGAGAGTTCACCAGGAGGGCATTTGCCCATGGCAAG...AACCAGAGTGAACCCATTGTAAATCTCCATGTAGGCCAAGCTCCGTGCTGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
CDS-3UTR GCA 90 bp GAGGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGACTTCTCTGTCCGCCTaGTCCAACACACCCTCTTCC +
Preference number: 4 (lower is better)
Translates to: EEVSTVRSLIHVSLLTVETSLSA*SNTPSS
Trigger: GGAAGAGGGTGTGTTGGAGCAGGCGGACAGAGAAGT...CTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp CCTGTCGTGGCTCAGCATATAACATGCAACGGGTTTCACATCCAGCACTACATCCAGTGTCCAGGAAGCTaGAGCTGGATGAGGAGGCCA +
Preference number: 4 (lower is better)
Translates to: PVVAQHITCNGFHIQHYIQCPGS*SWMRRP
Trigger: TGGCCTCCTCATCCAGCTGCAGCTTCCTGGACACTG...GATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTGAGCCACGACAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp GCATATAACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCAGCCCTGGCAGAGCTaGCTCAGTTCCCCATCCAGC +
Preference number: 4 (lower is better)
Translates to: AYNMQRVSHPALHHSGTWQPWQS*LSSPSS
Trigger: GCTGGATGGGGAACTGAGCCAGCTCTGCCAGGGCTG...CCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp ATAACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCAAGCAGCCCTGGCAGAGCTaGCTCAGTTCCCCATCCAGC +
Preference number: 4 (lower is better)
Translates to: ITCNGFHIQHYIIQALGKQPWQS*LSSPSS
Trigger: GCTGGATGGGGAACTGAGCCAGCTCTGCCAGGGCTG...CTTGCCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp CAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCAGTGATGGACACTGGCTTTTaGCTGAGTAGATTCACCAGA +
Preference number: 4 (lower is better)
Translates to: QIPDPCLSPHCGGLQTPVMDTGF*LSRFTR
Trigger: TCTGGTGAATCTACTCAGCCAAAAGCCAGTGTCCAT...CACTGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp GCATATAACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCCAGGAAGCTGCAGCTaGATGAGGAGGCCAGGTCGG +
Preference number: 4 (lower is better)
Translates to: AYNMQRVSHPALHHSGTWPGSCS*MRRPGR
Trigger: CCGACCTGGCCTCCTCATCCAGCTGCAGCTTCCTGG...CCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp GCATATAACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCCCTGGAGGTGGTACTaGTGCCTGACCCGGGTCAAG +
Preference number: 4 (lower is better)
Translates to: AYNMQRVSHPALHHSGTWPWRWY*CLTRVK
Trigger: CTTGACCCGGGTCAGGCACCAGTACCACCTCCAGGG...CCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR TCA 90 bp GCAAGTGAGATAAGGGAAGGGCATGATCAAAGCACAGGAGATACTTGGATGAAACCAGCACCCCCAGAATaGTGTCAGCCTGCTCCAGCC +
Preference number: 4 (lower is better)
Translates to: ASEIREGHDQSTGDTWMKPAPPE*CQPAPA
Trigger: GGCTGGAGCAGGCTGACATCATTCTGGGGGTGCTGG...TTTCATCCAAGTATCTCCTGTGCTTTGATCATGCCCTTCCCTTATCTCACTTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp AAGCCCTGTCGTGGCTCAGCATATAACATGCAACGGGTTTCACATCCAGCACTAACTTCTCTGTCCGCCTaGTCCAACACACCCTCTTCC +
Preference number: 4 (lower is better)
Translates to: KPCRGSAYNMQRVSHPALTSLSA*SNTPSS
Trigger: GGAAGAGGGTGTGTTGGAGCAGGCGGACAGAGAAGT...TAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTGAGCCACGACAGGGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp TGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCAATGGACACTGGCTTTTaGCTGAGTAGATTCACCAGA +
Preference number: 4 (lower is better)
Translates to: CQIPDPCLSPHCGGLQTPMDTGF*LSRFTR
Trigger: TCTGGTGAATCTACTCAGCCAAAAGCCAGTGTCCAT...TGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR TCA 90 bp CAGCATATAACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTAGGCCAGAGCCTTGGTaGGAGTCTTTGCCCAGCCCT +
Preference number: 4 (lower is better)
Translates to: QHITCNGFHIQHYIIQALRPEPW*ESLPSP
Trigger: AGGGCTGGGCAAAGACTCTCACCAAGGCTCTGGCCT...AAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR TCA 90 bp AAGCCCTGTCGTGGCTCAGCATATAACATGCAACGGGTTTCACATCCAGCACTAAGAAGTCCTGGAAGATaGGATCCAGGATCTCCTCCG +
Preference number: 4 (lower is better)
Translates to: KPCRGSAYNMQRVSHPALRSPGR*DPGSPP
Trigger: CGGAGGAGATCCTGGATCTCATCTTCCAGGACTTCT...TAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTGAGCCACGACAGGGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp GCATATAACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCAGTGTCCAGGAAGCTaGAGCTGGATGAGGAGGCCA +
Preference number: 4 (lower is better)
Translates to: AYNMQRVSHPALHHSGTWQCPGS*SWMRRP
Trigger: TGGCCTCCTCATCCAGCTGCAGCTTCCTGGACACTG...CCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp GCATATAACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGAGGCTCAGCTTGCCATaGGCAAATGCCCTCCTGGTG +
Preference number: 4 (lower is better)
Translates to: AYNMQRVSHPALHHSGTWRLSLP*ANALLV
Trigger: CACCAGGAGGGCATTTGCCCATGGCAAGCTGAGCCT...CCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp GAAACTGTCACAGCAATACTCATTCCAGGTACCACATGCTACTACACAAGTAAACCAGCACGTCACGGGTaGTCCCAGGCTCTGGGGACA +
Preference number: 4 (lower is better)
Translates to: ETVTAILIPGTTCYYTSKPARHG*SQALGT
Trigger: TGTCCCCAGAGCCTGGGACCACCCGTGACGTGCTGG...TTTACTTGTGTAGTAGCATGTGGTACCTGGAATGAGTATTGCTGTGACAGTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
3UTR CAA 72 bp CACAGGTGCTCTCTCAGTCTCAGGTCTAACTCCAGTTaGATCTATACAACCAGACTGGCCTCTCACAGGCCT +
Preference number: 4 (lower is better)
Translates to: HRCSLSLRSNSS*IYTTRLASHRP
Trigger: AGGCCTGTGAGAGGCCAGTCTGGTTGTATAGATCAAACTGGAGTTAGACCTGAGACTGAGAGAGCACCTGTG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
3UTR CAA 72 bp ACTGGCTTTTGGCTGAGTAGATTCACCAGACTGCTCTaGCCCGCATTGGGAGGTCCAGTGACCACAACATTT +
Preference number: 4 (lower is better)
Translates to: TGFWLSRFTRLL*PALGGPVTTTF
Trigger: AAATGTTGTGGTCACTGGACCTCCCAATGCGGGCAAGAGCAGTCTGGTGAATCTACTCAGCCAAAAGCCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
CDS-3UTR TCA 90 bp ATAACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCAAGGGACCTCCGTGTACGTaGAACTCCACGCAATCCTCA +
Preference number: 4 (lower is better)
Translates to: ITCNGFHIQHYIIQALGKGPPCT*NSTQSS
Trigger: TGAGGATTGCGTGGAGTTTCACGTACACGGAGGTCC...CTTGCCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
CDS-3UTR TCA 90 bp CCAGACTGGCCTCTCACAGGCCTAGAACTTTCTCTAAAGGATGCATGGATGGAGATCTGTAATGGGATCTaGTGCCCTCTTCTTGGTGAG +
Preference number: 4 (lower is better)
Translates to: PDWPLTGLELSLKDAWMEICNGI*CPLLGE
Trigger: CTCACCAAGAAGAGGGCATCAGATCCCATTACAGAT...CTCCATCCATGCATCCTTTAGAGAAAGTTCTAGGCCTGTGAGAGGCCAGTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
CDS-3UTR GCA 90 bp GAAACTGTCACAGCAATACTCATTCCAGGTACCACATGCTACTACACAAGTAAATCGGTCTTCAGGGCCTaGAGGAGGCTGTCCATCCCG +
Preference number: 4 (lower is better)
Translates to: ETVTAILIPGTTCYYTSKSVFRA*RRLSIP
Trigger: CGGGATGGACAGCCTCCTGCAGGCCCTGAAGACCGA...TTTACTTGTGTAGTAGCATGTGGTACCTGGAATGAGTATTGCTGTGACAGTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp GTCACAGCAATACTCATTCCAGGTACCACATGCTACTACACAAGTAAAAATTTATGCGGATCACTGCGATaGCGCAGCGTCCCTGGCCGG +
Preference number: 4 (lower is better)
Translates to: VTAILIPGTTCYYTSKNLCGSLR*RSVPGR
Trigger: CCGGCCAGGGACGCTGCGCCATCGCAGTGATCCGCA...TAAATTTTTACTTGTGTAGTAGCATGTGGTACCTGGAATGAGTATTGCTGTGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp CAGCATATAACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTAGGCTCAGCTTGCCATaGGCAAATGCCCTCCTGGTG +
Preference number: 4 (lower is better)
Translates to: QHITCNGFHIQHYIIQALRLSLP*ANALLV
Trigger: CACCAGGAGGGCATTTGCCCATGGCAAGCTGAGCCT...AAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp GCAAGTGAGATAAGGGAAGGGCATGATCAAAGCACAGGAGATACTTGGATGAAACTTGCCATGGGCAAATaGCCTCCTGGTGAACTCTCC +
Preference number: 4 (lower is better)
Translates to: ASEIREGHDQSTGDTWMKLAMGK*PPGELS
Trigger: GGAGAGTTCACCAGGAGGGCATTTGCCCATGGCAAG...TTTCATCCAAGTATCTCCTGTGCTTTGATCATGCCCTTCCCTTATCTCACTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp CCTTTGGTAATTAAAAATGAAATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGTCAGGCTCAGCTTaGCATGGGCAAATGCCCTCC +
Preference number: 4 (lower is better)
Translates to: PLVIKNEMPLIPALGRQRQSGSA*HGQMPS
Trigger: GGAGGGCATTTGCCCATGGCAAGCTGAGCCTGACTG...CCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATTTCATTTTTAATTACCAAAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp CCTTTGGTAATTAAAAATGAAATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGTCACCCGTGAAACTCTaGGGTCCTGGGAACCAGAGG +
Preference number: 4 (lower is better)
Translates to: PLVIKNEMPLIPALGRQRSPVKL*GPGNQR
Trigger: CCTCTGGTTCCCAGGACCCCAGAGTTTCACGGGTGA...CCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATTTCATTTTTAATTACCAAAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
CDS-3UTR CCA 90 bp GAGGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGATGGACACTGGCTTTTaGCTGAGTAGATTCACCAGA +
Preference number: 4 (lower is better)
Translates to: EEVSTVRSLIHVSLLTVEMDTGF*LSRFTR
Trigger: TCTGGTGAATCTACTCAGCCAAAAGCCAGTGTCCAT...CTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR TCA 90 bp GCAAGTGAGATAAGGGAAGGGCATGATCAAAGCACAGGAGATACTTGGATGAAAAGAAGTCCTGGAAGATaGGATCCAGGATCTCCTCCG +
Preference number: 4 (lower is better)
Translates to: ASEIREGHDQSTGDTWMKRSPGR*DPGSPP
Trigger: CGGAGGAGATCCTGGATCTCATCTTCCAGGACTTCT...TTTCATCCAAGTATCTCCTGTGCTTTGATCATGCCCTTCCCTTATCTCACTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp GCAAGTGAGATAAGGGAAGGGCATGATCAAAGCACAGGAGATACTTGGATGAAAGTAGATTCACCAGACTaGTCTTGCCCGCATTGGGAG +
Preference number: 4 (lower is better)
Translates to: ASEIREGHDQSTGDTWMKVDSPD*SCPHWE
Trigger: CTCCCAATGCGGGCAAGAGCAGTCTGGTGAATCTAC...TTTCATCCAAGTATCTCCTGTGCTTTGATCATGCCCTTCCCTTATCTCACTTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp GTCACAGCAATACTCATTCCAGGTACCACATGCTACTACACAAGTAAAAATTTATCGGTCTTCAGGGCCTaGAGGAGGCTGTCCATCCCG +
Preference number: 4 (lower is better)
Translates to: VTAILIPGTTCYYTSKNLSVFRA*RRLSIP
Trigger: CGGGATGGACAGCCTCCTGCAGGCCCTGAAGACCGA...TAAATTTTTACTTGTGTAGTAGCATGTGGTACCTGGAATGAGTATTGCTGTGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp GTCACAGCAATACTCATTCCAGGTACCACATGCTACTACACAAGTAAAAATTTACAGCCCTGGCAGAGCTaGCTCAGTTCCCCATCCAGC +
Preference number: 4 (lower is better)
Translates to: VTAILIPGTTCYYTSKNLQPWQS*LSSPSS
Trigger: GCTGGATGGGGAACTGAGCCAGCTCTGCCAGGGCTG...TAAATTTTTACTTGTGTAGTAGCATGTGGTACCTGGAATGAGTATTGCTGTGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
CDS-3UTR CCA 90 bp GTCACAGCAATACTCATTCCAGGTACCACATGCTACTACACAAGTAAAAATTTAGCATCCAGGCAGCCCTaGAGGTGGTACTGGTGCCTG +
Preference number: 4 (lower is better)
Translates to: VTAILIPGTTCYYTSKNLASRQP*RWYWCL
Trigger: CAGGCACCAGTACCACCTCCAGGGCTGCCTGGATGC...TAAATTTTTACTTGTGTAGTAGCATGTGGTACCTGGAATGAGTATTGCTGTGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp GTCACAGCAATACTCATTCCAGGTACCACATGCTACTACACAAGTAAAAATTTACTTGCCATGGGCAAATaGCCTCCTGGTGAACTCTCC +
Preference number: 4 (lower is better)
Translates to: VTAILIPGTTCYYTSKNLLAMGK*PPGELS
Trigger: GGAGAGTTCACCAGGAGGGCATTTGCCCATGGCAAG...TAAATTTTTACTTGTGTAGTAGCATGTGGTACCTGGAATGAGTATTGCTGTGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
CDS-3UTR GCA 90 bp GCAAGTGAGATAAGGGAAGGGCATGATCAAAGCACAGGAGATACTTGGATGAAACAGCAACCATATGGTTaGTCACAACCATCTGTAATG +
Preference number: 4 (lower is better)
Translates to: ASEIREGHDQSTGDTWMKQQPYG*SQPSVM
Trigger: CATTACAGATGGTTGTGAGCAACCATATGGTTGCTG...TTTCATCCAAGTATCTCCTGTGCTTTGATCATGCCCTTCCCTTATCTCACTTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
CDS CCA 90 bp CGGCTCCTGGAGCGCCGTGAGGCTGCGGAGCGCGAGCCCGCTAGCTaGACCGCTGGTGCGGATCACTGCGATGGCGCAGCGTCCCTGGCC +
Preference number: 5 (lower is better)
Translates to: RLLERREAAEREPAS*TAGADHCDGAASLA
Trigger: GGCCAGGGACGCTGCGCCATCGCAGTGATCCGCACCAGCGGTCCAGCTAGCGGGCTCGCGCTCCGCAGCCTCACGGCGCTCCAGGAGCCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS GCA 90 bp GCTGCGGAGCGCGAGCCCGCTAGCTGGACCGCTGGTGCGGATCACTaGGATGGCGCAGCGTCCCTGGCCGGAGCTGAGTGCGAAGATGGT +
Preference number: 5 (lower is better)
Translates to: AAEREPASWTAGADH*DGAASLAGAECEDG
Trigger: ACCATCTTCGCACTCAGCTCCGGCCAGGGACGCTGCGCCATCGCAGTGATCCGCACCAGCGGTCCAGCTAGCGGGCTCGCGCTCCGCAGC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS TCA 90 bp CTCACCCGTGAAACTCTGGGGTCCTTCTGGGAACCAGAGGACGAGTaGGCGGTCCAGTGGCTCCCCGGAGCACGGGTGGCGGAGAAGGCG +
Preference number: 5 (lower is better)
Translates to: LTRETLGSFWEPEDE*AVQWLPGARVAEKA
Trigger: CGCCTTCTCCGCCACCCGTGCTCCGGGGAGCCACTGGACCGCTCACTCGTCCTCTGGTTCCCAGAAGGACCCCAGAGTTTCACGGGTGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168847.8
CDS TCA 90 bp CGCTGGTGCGGATCACTGCGATGGCGCAGCGTCCCTGGCCGGAGCTaGGTGCGAAGATGGTGCTGCTGGGGACTAAGGACTCTGCACTGG +
Preference number: 5 (lower is better)
Translates to: RWCGSLRWRSVPGRS*VRRWCCWGLRTLHW
Trigger: CCAGTGCAGAGTCCTTAGTCCCCAGCAGCACCATCTTCGCACTCAGCTCCGGCCAGGGACGCTGCGCCATCGCAGTGATCCGCACCAGCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CAA 90 bp CAGCGCCCACGCCTTCCCGGAGCCCTGCAGTGTCGCTCAGCAAGACAGGGAACCCTGCTCTTGCCCGCATaGGGAGGTCCAGTGACCACA +
Preference number: 5 (lower is better)
Translates to: QRPRLPGALQCRSARQGTLLLPA*GGPVTT
Trigger: TGTGGTCACTGGACCTCCCAATGCGGGCAAGAGCAG...GGTTCCCTGTCTTGCTGAGCGACACTGCAGGGCTCCGGGAAGGCGTGGGCGCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095259.10
CDS CCA 90 bp AAATGCCCTCCTGGTGAACTCTCCGGCCTCGGCTGGCCGCAGTCCTaGCACACTACCCAATGCCTGCAAGACACCGCTGACCACCGCAGG +
Preference number: 5 (lower is better)
Translates to: KCPPGELSGLGWPQS*HTTQCLQDTADHRR
Trigger: CCTGCGGTGGTCAGCGGTGTCTTGCAGGCATTGGGTAGTGTGCCAGGACTGCGGCCAGCCGAGGCCGGAGAGTTCACCAGGAGGGCATTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CAA 90 bp CAGCGCCCACGCCTTCCCGGAGCCCTGCAGTGTCGCTCAGCAAGACAGGGAACCTCAGTCAGGCTCAGCTaGCCATGGGCAAATGCCCTC +
Preference number: 5 (lower is better)
Translates to: QRPRLPGALQCRSARQGTSVRLS*PWANAL
Trigger: GAGGGCATTTGCCCATGGCAAGCTGAGCCTGACTGA...GGTTCCCTGTCTTGCTGAGCGACACTGCAGGGCTCCGGGAAGGCGTGGGCGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095259.10
ENSMUST00000127741.2
CDS CCA 90 bp CTTGCCATGGGCAAATGCCCTCCTGGTGAACTCTCCGGCCTCGGCTaGCCGCAGTCCTGGCACACTACCCAATGCCTGCAAGACACCGCT +
Preference number: 5 (lower is better)
Translates to: LAMGKCPPGELSGLG*PQSWHTTQCLQDTA
Trigger: AGCGGTGTCTTGCAGGCATTGGGTAGTGTGCCAGGACTGCGGCCAGCCGAGGCCGGAGAGTTCACCAGGAGGGCATTTGCCCATGGCAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS GCA 90 bp CCACCTCCAGGGCTCGAACTTCTCTGTCCGCTTGGTGAGAGTCTTTaGCCAGCCCTGGCAGAGCTGGCTCAGTTCCCCATCCAGCTGCCT +
Preference number: 5 (lower is better)
Translates to: PPPGLELLCPLGESL*PALAELAQFPIQLP
Trigger: AGGCAGCTGGATGGGGAACTGAGCCAGCTCTGCCAGGGCTGGGCAAAGACTCTCACCAAGCGGACAGAGAAGTTCGAGCCCTGGAGGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095259.10
CDS TCA 90 bp CTGGCCGCAGTCCTGGCACACTACCCAATGCCTGCAAGACACCGCTaGCCACCGCAGGACCTCCGTGTACGTGAAACTCCACGCAATCCT +
Preference number: 5 (lower is better)
Translates to: LAAVLAHYPMPARHR*PPQDLRVRETPRNP
Trigger: AGGATTGCGTGGAGTTTCACGTACACGGAGGTCCTGCGGTGGTCAGCGGTGTCTTGCAGGCATTGGGTAGTGTGCCAGGACTGCGGCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS CCA 90 bp ATAAGATCTGCCAGTCCCTCCACTTCAGTCAGGCTCAGCTTGCCATaGGCAAATGCCCTCCTGGTGAACTCTCCGGCCTCGGCTGGCCGC +
Preference number: 5 (lower is better)
Translates to: IRSASPSTSVRLSLP*ANALLVNSPASAGR
Trigger: GCGGCCAGCCGAGGCCGGAGAGTTCACCAGGAGGGCATTTGCCCATGGCAAGCTGAGCCTGACTGAAGTGGAGGGACTGGCAGATCTTAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS CCA 90 bp GGCTCGAACTTCTCTGTCCGCTTGGTGAGAGTCTTTGCCCAGCCCTaGCAGAGCTGGCTCAGTTCCCCATCCAGCTGCCTCAGAGCCTGT +
Preference number: 5 (lower is better)
Translates to: GSNFSVRLVRVFAQP*QSWLSSPSSCLRAC
Trigger: ACAGGCTCTGAGGCAGCTGGATGGGGAACTGAGCCAGCTCTGCCAGGGCTGGGCAAAGACTCTCACCAAGCGGACAGAGAAGTTCGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095259.10
CDS TCA 90 bp AATGCCTGCAAGACACCGCTGACCACCGCAGGACCTCCGTGTACGTaGAACTCCACGCAATCCTCACCCGTGAAACTCTGGGGTCCTGGG +
Preference number: 5 (lower is better)
Translates to: NACKTPLTTAGPPCT*NSTQSSPVKLWGPG
Trigger: CCCAGGACCCCAGAGTTTCACGGGTGAGGATTGCGTGGAGTTTCACGTACACGGAGGTCCTGCGGTGGTCAGCGGTGTCTTGCAGGCATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
CDS TCA 90 bp CCGCAGGACCTCCGTGTACGTGAAACTCCACGCAATCCTCACCCGTaGAACTCTGGGGTCCTTCTGGGAACCAGAGGACGAGTGAGCGGT +
Preference number: 5 (lower is better)
Translates to: PQDLRVRETPRNPHP*NSGVLLGTRGRVSG
Trigger: ACCGCTCACTCGTCCTCTGGTTCCCAGAAGGACCCCAGAGTTTCACGGGTGAGGATTGCGTGGAGTTTCACGTACACGGAGGTCCTGCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168847.8
CDS CCA 90 bp AGCTGGCTCAGTTCCCCATCCAGCTGCCTCAGAGCCTGTCGACGCTaGGCCTCAGTTTCTGCACGGATAAGATCTGCCAGTCCCTCCACT +
Preference number: 5 (lower is better)
Translates to: SWLSSPSSCLRACRR*ASVSARIRSASPST
Trigger: AGTGGAGGGACTGGCAGATCTTATCCGTGCAGAAACTGAGGCCCAGCGTCGACAGGCTCTGAGGCAGCTGGATGGGGAACTGAGCCAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS TCA 90 bp CCTCTCCGAAGTCAATGTAGGCCTCCACATAGGCCAGAGCCTTGGTaGGAGTCTTTGCCCAGCCCTGGCAGAGCTGGCTCAGTTCCCCAT +
Preference number: 5 (lower is better)
Translates to: PLRSQCRPPHRPEPW*ESLPSPGRAGSVPH
Trigger: ATGGGGAACTGAGCCAGCTCTGCCAGGGCTGGGCAAAGACTCTCACCAAGGCTCTGGCCTATGTGGAGGCCTACATTGACTTCGGAGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CAA 90 bp CAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCAGTGTCAGTCAGGCTCAGCTaGCCATGGGCAAATGCCCTC +
Preference number: 5 (lower is better)
Translates to: QIPDPCLSPHCGGLQTPVSVRLS*PWANAL
Trigger: GAGGGCATTTGCCCATGGCAAGCTGAGCCTGACTGA...CACTGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CAA 90 bp CCAGCCAAGTCCACGGGAGTCTCCAGCACGTCACGGGTGGTCCCAGGCTCTGGGCCAGCAACCATATGGTaGCTCACAACCATCTGTAAT +
Preference number: 5 (lower is better)
Translates to: PAKSTGVSSTSRVVPGSGPATIW*LTTICN
Trigger: ATTACAGATGGTTGTGAGCAACCATATGGTTGCTGG...CCCAGAGCCTGGGACCACCCGTGACGTGCTGGAGACTCCCGTGGACTTGGCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
CDS TCA 90 bp AATGCCTGCAAGACACCGCTGACCACCGCAGGACCTCCGTGTACGTaGAACTCCACGCAATCCTCACCCGTGAAACTCTGGGGTCCTTCT +
Preference number: 5 (lower is better)
Translates to: NACKTPLTTAGPPCT*NSTQSSPVKLWGPS
Trigger: AGAAGGACCCCAGAGTTTCACGGGTGAGGATTGCGTGGAGTTTCACGTACACGGAGGTCCTGCGGTGGTCAGCGGTGTCTTGCAGGCATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168847.8
CDS GCA 90 bp CAGAGCCTGTCGACGCTGGGCCTCAGTTTCTGCACGGATAAGATCTaGCAGTCCCTCCACTTCAGTCAGGCTCAGCTTGCCATGGGCAAA +
Preference number: 5 (lower is better)
Translates to: QSLSTLGLSFCTDKI*QSLHFSQAQLAMGK
Trigger: TTTGCCCATGGCAAGCTGAGCCTGACTGAAGTGGAGGGACTGGCAGATCTTATCCGTGCAGAAACTGAGGCCCAGCGTCGACAGGCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CAA 90 bp TGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCAGACGCCATCAGTCAGGCTCAGCTaGCCATGGGCAAATGCCCTC +
Preference number: 5 (lower is better)
Translates to: CQIPDPCLSPHCGGLQTPSVRLS*PWANAL
Trigger: GAGGGCATTTGCCCATGGCAAGCTGAGCCTGACTGA...TGGCGTCTGCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CAA 90 bp GGGTTCCAGAAGGCTGTGGGCAGCACGGAGCTTGGCCTACATGGAGATTTACAACTGCTCTTGCCCGCATaGGGAGGTCCAGTGACCACA +
Preference number: 5 (lower is better)
Translates to: GFQKAVGSTELGLHGDLQLLLPA*GGPVTT
Trigger: TGTGGTCACTGGACCTCCCAATGCGGGCAAGAGCAG...TTGTAAATCTCCATGTAGGCCAAGCTCCGTGCTGCCCACAGCCTTCTGGAACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150969.8
CDS-3UTR CAA 90 bp TTTGCCATCTTGGATCATGACCTTGTGGGAACTCCGAGGCTGAGTCCCAGGCTCTTCACCAGACTGCTCTaGCCCGCATTGGGAGGTCCA +
Preference number: 5 (lower is better)
Translates to: FAILDHDLVGTPRLSPRLFTRLL*PALGGP
Trigger: TGGACCTCCCAATGCGGGCAAGAGCAGTCTGGTGAA...GAGCCTGGGACTCAGCCTCGGAGTTCCCACAAGGTCATGATCCAAGATGGCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CAA 90 bp GAGGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGCTGCTCTTGCCCGCATaGGGAGGTCCAGTGACCACA +
Preference number: 5 (lower is better)
Translates to: EEVSTVRSLIHVSLLTVELLLPA*GGPVTT
Trigger: TGTGGTCACTGGACCTCCCAATGCGGGCAAGAGCAG...CTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CAA 90 bp GAGGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGTTCACCAGACTGCTCTaGCCCGCATTGGGAGGTCCA +
Preference number: 5 (lower is better)
Translates to: EEVSTVRSLIHVSLLTVEFTRLL*PALGGP
Trigger: TGGACCTCCCAATGCGGGCAAGAGCAGTCTGGTGAA...CTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CAA 90 bp GAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCAGCAGATCAGATTTGTaGAGCAGCAGCAGGAGGCGC +
Preference number: 5 (lower is better)
Translates to: EVSTVRSLIHVSLLTVEGSRSDL*SSSRRR
Trigger: GCGCCTCCTGCTGCTGCTCAACAAATCTGATCTGCT...GCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CAA 90 bp GTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGCTGCGACAGCAGATCAGATTaGTTGAGCAGCAGCAGGAGG +
Preference number: 5 (lower is better)
Translates to: VSTVRSLIHVSLLTVEGCDSRSD*LSSSRR
Trigger: CCTCCTGCTGCTGCTCAACAAATCTGATCTGCTGTC...GCAGCCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CAA 90 bp GGGAGGAGGGGAGATGTCACAGGTGCTCTCTCAGTCTCAGGTCTAACTCCAGTTTCTGATGCCCTCTTCTaGGTGAGAGTCTTTGCCCAG +
Preference number: 5 (lower is better)
Translates to: GRRGDVTGALSVSGLTPVSDALF*VRVFAQ
Trigger: CTGGGCAAAGACTCTCACCAAGAAGAGGGCATCAGA...AACTGGAGTTAGACCTGAGACTGAGAGAGCACCTGTGACATCTCCCCTCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2
CDS-3UTR CAA 90 bp CCTGTCGTGGCTCAGCATATAACATGCAACGGGTTTCACATCCAGCACTACATCTCAGTCAGGCTCAGCTaGCCATGGGCAAATGCCCTC +
Preference number: 5 (lower is better)
Translates to: PVVAQHITCNGFHIQHYISVRLS*PWANAL
Trigger: GAGGGCATTTGCCCATGGCAAGCTGAGCCTGACTGA...GATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTGAGCCACGACAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
CDS-3UTR CAA 90 bp ACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCAAGGTGTCAGTCAGGCTCAGCTaGCCATGGGCAAATGCCCTC +
Preference number: 5 (lower is better)
Translates to: TCNGFHIQHYIIQALGKVSVRLS*PWANAL
Trigger: GAGGGCATTTGCCCATGGCAAGCTGAGCCTGACTGA...CACCTTGCCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000168847.8
CDS-3UTR CAA 90 bp GGAAGTATCCACTGTCAGATCCCTGATCCATGTCTCTCTCCTCACTGTGGAGGGGACAGCAGATCAGATTaGTTGAGCAGCAGCAGGAGG +
Preference number: 5 (lower is better)
Translates to: GSIHCQIPDPCLSPHCGGDSRSD*LSSSRR
Trigger: CCTCCTGCTGCTGCTCAACAAATCTGATCTGCTGTC...CCCTCCACAGTGAGGAGAGAGACATGGATCAGGGATCTGACAGTGGATACTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS-3UTR CAA 90 bp GTCGTGGCTCAGCATATAACATGCAACGGGTTTCACATCCAGCACTACATCATTCTGCTCTTGCCCGCATaGGGAGGTCCAGTGACCACA +
Preference number: 5 (lower is better)
Translates to: VVAQHITCNGFHIQHYIILLLPA*GGPVTT
Trigger: TGTGGTCACTGGACCTCCCAATGCGGGCAAGAGCAG...AATGATGTAGTGCTGGATGTGAAACCCGTTGCATGTTATATGCTGAGCCACGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000168847.8
CDS-3UTR CAA 90 bp ACATGCAACGGGTTTCACATCCAGCACTACATCATTCAGGCACTTGGCAAGGTGGACAGCAGATCAGATTaGTTGAGCAGCAGCAGGAGG +
Preference number: 5 (lower is better)
Translates to: TCNGFHIQHYIIQALGKVDSRSD*LSSSRR
Trigger: CCTCCTGCTGCTGCTCAACAAATCTGATCTGCTGTC...CACCTTGCCAAGTGCCTGAATGATGTAGTGCTGGATGTGAAACCCGTTGCATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR CAA 90 bp CCTTTGGTAATTAAAAATGAAATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGTTCACCAGACTGCTCTaGCCCGCATTGGGAGGTCCA +
Preference number: 5 (lower is better)
Translates to: PLVIKNEMPLIPALGRQRFTRLL*PALGGP
Trigger: TGGACCTCCCAATGCGGGCAAGAGCAGTCTGGTGAA...CCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATTTCATTTTTAATTACCAAAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS-3UTR CAA 90 bp GCAAGTGAGATAAGGGAAGGGCATGATCAAAGCACAGGAGATACTTGGATGAAAAGCAGATCAGATTTGTaGAGCAGCAGCAGGAGGCGC +
Preference number: 5 (lower is better)
Translates to: ASEIREGHDQSTGDTWMKSRSDL*SSSRRR
Trigger: GCGCCTCCTGCTGCTGCTCAACAAATCTGATCTGCT...TTTCATCCAAGTATCTCCTGTGCTTTGATCATGCCCTTCCCTTATCTCACTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000007754.13
ENSMUST00000168847.8
CDS CCA 72 bp AGGCGCAGGCAGGCTCTGCGGGCAGGAGGCGGCTCCTaGAGCGCCGTGAGGCTGCGGAGCGCGAGCCCGCTA +
Preference number: 6 (lower is better)
Translates to: RRRQALRAGGGS*SAVRLRSASPL
Trigger: TAGCGGGCTCGCGCTCCGCAGCCTCACGGCGCTCCAGGAGCCGCCTCCTGCCCGCAGAGCCTGCCTGCGCCT
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS TCA 72 bp AGGACTCTGCACTGGTGCTGCAGCGTGCGCACAGCCTaGGGGGCGCCCACGCCGCCTGGGTCACCAGGGCGC +
Preference number: 6 (lower is better)
Translates to: RTLHWCCSVRTA*GAPTPPGSPGR
Trigger: GCGCCCTGGTGACCCAGGCGGCGTGGGCGCCCCTCAGGCTGTGCGCACGCTGCAGCACCAGTGCAGAGTCCT
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS CCA 72 bp GAGCGCCGTGAGGCTGCGGAGCGCGAGCCCGCTAGCTaGACCGCTGGTGCGGATCACTGCGATGGCGCAGCG +
Preference number: 6 (lower is better)
Translates to: ERREAAEREPAS*TAGADHCDGAA
Trigger: CGCTGCGCCATCGCAGTGATCCGCACCAGCGGTCCAGCTAGCGGGCTCGCGCTCCGCAGCCTCACGGCGCTC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS TCA 72 bp CGTGAAACTCTGGGGTCCTGGGAACCAGAGGACGAGTaGGCGGTCCAGTGGCTCCCCGGAGCACGGGTGGCG +
Preference number: 6 (lower is better)
Translates to: RETLGSWEPEDE*AVQWLPGARVA
Trigger: CGCCACCCGTGCTCCGGGGAGCCACTGGACCGCTCACTCGTCCTCTGGTTCCCAGGACCCCAGAGTTTCACG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
CDS TCA 72 bp GAAACTCTGGGGTCCTTCTGGGAACCAGAGGACGAGTaGGCGGTCCAGTGGCTCCCCGGAGCACGGGTGGCG +
Preference number: 6 (lower is better)
Translates to: ETLGSFWEPEDE*AVQWLPGARVA
Trigger: CGCCACCCGTGCTCCGGGGAGCCACTGGACCGCTCACTCGTCCTCTGGTTCCCAGAAGGACCCCAGAGTTTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168847.8
CDS GCA 72 bp CTCCACTTCAGTCAGGCTCAGCTTGCCATGGGCAAATaGCCTCCTGGTGAACTCTCCGGCCTCGGCTGGCCG +
Preference number: 6 (lower is better)
Translates to: LHFSQAQLAMGK*PPGELSGLGWP
Trigger: CGGCCAGCCGAGGCCGGAGAGTTCACCAGGAGGGCATTTGCCCATGGCAAGCTGAGCCTGACTGAAGTGGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS GCA 72 bp CAGCCCTGGCAGAGCTGGCTCAGTTCCCCATCCAGCTaGCTCAGAGCCTGTCGACGCTGGGCCTCAGTTTCT +
Preference number: 6 (lower is better)
Translates to: QPWQSWLSSPSS*LRACRRWASVS
Trigger: AGAAACTGAGGCCCAGCGTCGACAGGCTCTGAGGCAGCTGGATGGGGAACTGAGCCAGCTCTGCCAGGGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS CCA 72 bp GGCAAATGCCCTCCTGGTGAACTCTCCGGCCTCGGCTaGCCGCAGTCCTGGCACACTACCCAATGCCTGCAA +
Preference number: 6 (lower is better)
Translates to: GKCPPGELSGLG*PQSWHTTQCLQ
Trigger: TTGCAGGCATTGGGTAGTGTGCCAGGACTGCGGCCAGCCGAGGCCGGAGAGTTCACCAGGAGGGCATTTGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS TCA 72 bp GCCACCTCCAGGGCTCGAACTTCTCTGTCCGCTTGGTaGGAGTCTTTGCCCAGCCCTGGCAGAGCTGGCTCA +
Preference number: 6 (lower is better)
Translates to: ATSRARTSLSAW*ESLPSPGRAGS
Trigger: TGAGCCAGCTCTGCCAGGGCTGGGCAAAGACTCTCACCAAGCGGACAGAGAAGTTCGAGCCCTGGAGGTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095259.10
CDS GCA 72 bp GGCCTCCACATAGGCCAGAGCCTTGGTGAGAGTCTTTaGCCAGCCCTGGCAGAGCTGGCTCAGTTCCCCATC +
Preference number: 6 (lower is better)
Translates to: GLHIGQSLGESL*PALAELAQFPI
Trigger: GATGGGGAACTGAGCCAGCTCTGCCAGGGCTGGGCAAAGACTCTCACCAAGGCTCTGGCCTATGTGGAGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000007754.13
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS CCA 72 bp GCCAGTCCCTCCACTTCAGTCAGGCTCAGCTTGCCATaGGCAAATGCCCTCCTGGTGAACTCTCCGGCCTCG +
Preference number: 6 (lower is better)
Translates to: ASPSTSVRLSLP*ANALLVNSPAS
Trigger: CGAGGCCGGAGAGTTCACCAGGAGGGCATTTGCCCATGGCAAGCTGAGCCTGACTGAAGTGGAGGGACTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS CAA 90 bp GCACGGATAAGATCTGCCAGTCCCTCCACTTCAGTCAGGCTCAGCTaGCCATGGGCAAATGCCCTCCTGGTGAACTCTCCGGCCTCGGCT +
Preference number: 6 (lower is better)
Translates to: ARIRSASPSTSVRLS*PWANALLVNSPASA
Trigger: AGCCGAGGCCGGAGAGTTCACCAGGAGGGCATTTGCCCATGGCAAGCTGAGCCTGACTGAAGTGGAGGGACTGGCAGATCTTATCCGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS TCA 72 bp CTCCGTGTACGTGAAACTCCACGCAATCCTCACCCGTaGAACTCTGGGGTCCTGGGAACCAGAGGACGAGTG +
Preference number: 6 (lower is better)
Translates to: LRVRETPRNPHP*NSGVLGTRGRV
Trigger: CACTCGTCCTCTGGTTCCCAGGACCCCAGAGTTTCACGGGTGAGGATTGCGTGGAGTTTCACGTACACGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
CDS TCA 72 bp AAGACACCGCTGACCACCGCAGGACCTCCGTGTACGTaGAACTCCACGCAATCCTCACCCGTGAAACTCTGG +
Preference number: 6 (lower is better)
Translates to: KTPLTTAGPPCT*NSTQSSPVKLW
Trigger: CCAGAGTTTCACGGGTGAGGATTGCGTGGAGTTTCACGTACACGGAGGTCCTGCGGTGGTCAGCGGTGTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS GCA 72 bp TCGACGCTGGGCCTCAGTTTCTGCACGGATAAGATCTaGCAGTCCCTCCACTTCAGTCAGGCTCAGCTTGCC +
Preference number: 6 (lower is better)
Translates to: STLGLSFCTDKI*QSLHFSQAQLA
Trigger: GGCAAGCTGAGCCTGACTGAAGTGGAGGGACTGGCAGATCTTATCCGTGCAGAAACTGAGGCCCAGCGTCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS GCA 72 bp CTGCCTCAGAGCCTGTCGACGCTGGGCCTCAGTTTCTaGACGGATAAGATCTGCCAGTCCCTCCACTTCAGT +
Preference number: 6 (lower is better)
Translates to: LPQSLSTLGLSF*TDKICQSLHFS
Trigger: ACTGAAGTGGAGGGACTGGCAGATCTTATCCGTGCAGAAACTGAGGCCCAGCGTCGACAGGCTCTGAGGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000007754.13
ENSMUST00000095259.10
ENSMUST00000127741.2
ENSMUST00000150969.8
ENSMUST00000168847.8
CDS CAA 72 bp TCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTaGGTGAGAGTCTTTGCCCAGCCCTGGCAGAGCTGG +
Preference number: 6 (lower is better)
Translates to: SQPSVMGSDALF*VRVFAQPWQSW
Trigger: CCAGCTCTGCCAGGGCTGGGCAAAGACTCTCACCAAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127741.2