RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GTPBP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042535

Ensembl transcript IDs: ENSMUST00000046463.10, ENSMUST00000228991.2, ENSMUST00000229046.2, ENSMUST00000229583.2, ENSMUST00000230262.2, ENSMUST00000230898.2, ENSMUST00000231095.2

Found 239 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAGCCAGCTGAGGATCTGTCCTGGCTGAGAAGGAGCACCCTAGCCTaGGGCGATGGTGCAGGGCTGTGCCCACACTGCTCTGGGCAGCCC +
Preference number: 1 (lower is better)
Translates to: QPAEDLSWLRRSTLA*GDGAGLCPHCSGQP
Trigger: GGGCTGCCCAGAGCAGTGTGGGCACAGCCCTGCACCATCGCCTCAGGCTAGGGTGCTCCTTCTCAGCCAGGACAGATCCTCAGCTGGCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR CCA 90 bp GTGGGCCGGTGGTGGTCAAAGATTCTCTGCCCAGTTGGTGAGCAGTaGCCAGTGAGCAATGAGGATCCCATGGGTGGTCAAGTGGACCTG +
Preference number: 1 (lower is better)
Translates to: VGRWWSKILCPVGEQ*PVSNEDPMGGQVDL
Trigger: CAGGTCCACTTGACCACCCATGGGATCCTCATTGCTCACTGGCCACTGCTCACCAACTGGGCAGAGAATCTTTGACCACCACCGGCCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR CCA 90 bp ATACAGACGGATGGAAGGACAGGCAGGCAGTCAGCTCTTGGAGGCTaGTGTCCAGCTAGGACCGAAACGGAGACTGACAGGGTCAGCTGC +
Preference number: 1 (lower is better)
Translates to: IQTDGRTGRQSALGG*CPARTETETDRVSC
Trigger: GCAGCTGACCCTGTCAGTCTCCGTTTCGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCCTTCCATCCGTCTGTAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR TCA 90 bp GGTGGTGGTCAAAGATTCTCTGCCCAGTTGGTGAGCAGTGGCCAGTaGGCAATGAGGATCCCATGGGTGGTCAAGTGGACCTGGGGGACA +
Preference number: 1 (lower is better)
Translates to: GGGQRFSAQLVSSGQ*AMRIPWVVKWTWGT
Trigger: TGTCCCCCAGGTCCACTTGACCACCCATGGGATCCTCATTGCTCACTGGCCACTGCTCACCAACTGGGCAGAGAATCTTTGACCACCACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR CCA 90 bp GGCCTAGAAGGGTCTGCATTGCCACCTGCCCTTGTATACCCCAAATaGGGCATCAGGGCTCAGACCCTTCACTGCTATGTGGCATGGCTG +
Preference number: 1 (lower is better)
Translates to: GLEGSALPPALVYPK*GIRAQTLHCYVAWL
Trigger: CAGCCATGCCACATAGCAGTGAAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGGTGGCAATGCAGACCCTTCTAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR GCA 90 bp CTGACAGGGTCAGCTGCACTCCTGCACACACCTGCTATAGGCGTGTaGATGCACACACTCACACAGACACACATAGACACACAGATACAC +
Preference number: 1 (lower is better)
Translates to: LTGSAALLHTPAIGV*MHTLTQTHIDTQIH
Trigger: GTGTATCTGTGTGTCTATGTGTGTCTGTGTGAGTGTGTGCATGCACACGCCTATAGCAGGTGTGTGCAGGAGTGCAGCTGACCCTGTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR CCA 90 bp TTCCCTAAAGGTTCTGAGGATCTCACTGAGACAAATACAGACGGATaGAAGGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGC +
Preference number: 1 (lower is better)
Translates to: FPKGSEDLTETNTDG*KDRQAVSSWRLVSS
Trigger: GCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCCTTCCATCCGTCTGTATTTGTCTCAGTGAGATCCTCAGAACCTTTAGGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR CCA 90 bp CCAGAGGTCGGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCCATTGGCCAGGGAGGACTCTCTGGCTGTaGACTGGAGTGGGCCGGTGG +
Preference number: 2 (lower is better)
Translates to: PEVGPKEGLLAKRGHWPGRTLWL*TGVGRW
Trigger: CCACCGGCCCACTCCAGTCCACAGCCAGAGAGTCCT...CCCTGGCCAATGGCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCCGACCTCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR GCA 90 bp AGGTGGGGCTGTAGAGGGCTCCAGCCAGCTGAGGATCTGTCCTGGCTGAGAAGGGATGGTGCAGGGCTGTaGCCACACTGCTCTGGGCAG +
Preference number: 2 (lower is better)
Translates to: RWGCRGLQPAEDLSWLRRDGAGL*PHCSGQ
Trigger: CTGCCCAGAGCAGTGTGGGCACAGCCCTGCACCATC...CCTTCTCAGCCAGGACAGATCCTCAGCTGGCTGGAGCCCTCTACAGCCCCACCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR CCA 90 bp AGGTGGGGCTGTAGAGGGCTCCAGCCAGCTGAGGATCTGTCCTGGCTGAGAAGGGGCTGTGGACTGGAGTaGGCCGGTGGTGGTCAAAGA +
Preference number: 2 (lower is better)
Translates to: RWGCRGLQPAEDLSWLRRGCGLE*AGGGQR
Trigger: TCTTTGACCACCACCGGCCCACTCCAGTCCACAGCC...CCTTCTCAGCCAGGACAGATCCTCAGCTGGCTGGAGCCCTCTACAGCCCCACCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR GCA 90 bp CCAGAGGTCGGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCCATTGGCCAGGGCCTGCTATAGGCGTGTaGATGCACACACTCACACAG +
Preference number: 2 (lower is better)
Translates to: PEVGPKEGLLAKRGHWPGPAIGV*MHTLTQ
Trigger: CTGTGTGAGTGTGTGCATGCACACGCCTATAGCAGG...CCCTGGCCAATGGCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCCGACCTCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR GCA 90 bp CCTGCCCTTGTATACCCCAAATGGGGCATCAGGGCTCAGACCCTTCACTGCTATACTGACAGGGTCAGCTaGACTCCTGCACACACCTGC +
Preference number: 2 (lower is better)
Translates to: PALVYPKWGIRAQTLHCYTDRVS*TPAHTC
Trigger: GCAGGTGTGTGCAGGAGTGCAGCTGACCCTGTCAGT...ATAGCAGTGAAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR CCA 90 bp GTCGTTCAGTTTGATCAGGCCCCGCAGGGTGGTCCCAGACACCACTGTCCCCACGTGACATTGGAGATCTaGAATATCGGGCACATCCTC +
Preference number: 2 (lower is better)
Translates to: VVQFDQAPQGGPRHHCPHVTLEI*NIGHIL
Trigger: GAGGATGTGCCCGATATTCCAGATCTCCAATGTCAC...GTGGGGACAGTGGTGTCTGGGACCACCCTGCGGGGCCTGATCAAACTGAACGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
3UTR-3UTR TCA 90 bp CCCCACCAAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAAGTGAGCAGTGGCCAGTaGGCAATGAGGATCCCATGG +
Preference number: 2 (lower is better)
Translates to: PHQRRYYKTRKTQSSSPEVSSGQ*AMRIPW
Trigger: CCATGGGATCCTCATTGCTCACTGGCCACTGCTCAC...TTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTTGGTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR TCA 90 bp CCTGCCCTTGTATACCCCAAATGGGGCATCAGGGCTCAGACCCTTCACTGCTATATTTCTAGTCCTGGCTaGACTCAGGAGCACCTCCCC +
Preference number: 2 (lower is better)
Translates to: PALVYPKWGIRAQTLHCYISSPG*TQEHLP
Trigger: GGGGAGGTGCTCCTGAGTTCAGCCAGGACTAGAAAT...ATAGCAGTGAAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR CCA 90 bp CCCCACCAAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAAGGAGTGGGCCGGTGGTaGTCAAAGATTCTCTGCCCA +
Preference number: 2 (lower is better)
Translates to: PHQRRYYKTRKTQSSSPEGVGRW*SKILCP
Trigger: TGGGCAGAGAATCTTTGACCACCACCGGCCCACTCC...TTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTTGGTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR CCA 90 bp CCCCACCAAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAATCAGCTCTTGGAGGCTaGTGTCCAGCTAGGACCGAA +
Preference number: 2 (lower is better)
Translates to: PHQRRYYKTRKTQSSSPESALGG*CPARTE
Trigger: TTCGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGA...TTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTTGGTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR CAA 90 bp GGCTCAGACCCTTCACTGCTATGTGGCATGGCTGTAGCGGTTGTGTaGGGTGACATTGGGAAAGGAGCATTTCTAGTCCTGGCTGAACTC +
Preference number: 2 (lower is better)
Translates to: GSDPSLLCGMAVAVV*GDIGKGAFLVLAEL
Trigger: GAGTTCAGCCAGGACTAGAAATGCTCCTTTCCCAATGTCACCCAACACAACCGCTACAGCCATGCCACATAGCAGTGAAGGGTCTGAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR CAA 90 bp ATCCTCTCAGAGCTGAAGTTGGAGGCTGTGACAATCACATCATCTTaGCTCTGCACCAGGACAGGGATCTTCCGGCAGCCTGGTGACTTC +
Preference number: 2 (lower is better)
Translates to: ILSELKLEAVTITSS*LCTRTGIFRQPGDF
Trigger: GAAGTCACCAGGCTGCCGGAAGATCCCTGTCCTGGTGCAGAGCAAAGATGATGTGATTGTCACAGCCTCCAACTTCAGCTCTGAGAGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
3UTR-3UTR GCA 90 bp CCCCACCAAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAAACTCCTGCACACACCTaGTATAGGCGTGTGCATGCA +
Preference number: 2 (lower is better)
Translates to: PHQRRYYKTRKTQSSSPETPAHT*YRRVHA
Trigger: TGCATGCACACGCCTATAGCAGGTGTGTGCAGGAGT...TTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTTGGTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR GCA 90 bp TGGTCCCAGACACCACTGTCCCCACGCCAGGGACAGAGTAGGTGTCATCTATCTACATCATCTTTGCTCTaGACCAGGACAGGGATCTTC +
Preference number: 2 (lower is better)
Translates to: WSQTPLSPRQGQSRCHLSTSSLL*TRTGIF
Trigger: GAAGATCCCTGTCCTGGTGCAGAGCAAAGATGATGT...AGATAGATGACACCTACTCTGTCCCTGGCGTGGGGACAGTGGTGTCTGGGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
3UTR-3UTR GCA 90 bp TGGTCCCAGACACCACTGTCCCCACGCCAGGGACAGAGTAGGTGTCATCTATCTCAATCACATCATCTTTaGTCTGCACCAGGACAGGGA +
Preference number: 2 (lower is better)
Translates to: WSQTPLSPRQGQSRCHLSQSHHL*SAPGQG
Trigger: TCCCTGTCCTGGTGCAGAGCAAAGATGATGTGATTG...AGATAGATGACACCTACTCTGTCCCTGGCGTGGGGACAGTGGTGTCTGGGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
3UTR-3UTR TCA 90 bp TCAGCCAGAGATCTAAGTAGAAACAGGAAGAGCCTCCTGCGGGCACAGAAGCCACATCACAGGTGCCACTaGAGAGCTTGGAGGAAAAAG +
Preference number: 2 (lower is better)
Translates to: SARDLSRNRKSLLRAQKPHHRCH*RAWRKK
Trigger: CTTTTTCCTCCAAGCTCTTCAGTGGCACCTGTGATG...TGGCTTCTGTGCCCGCAGGAGGCTCTTCCTGTTTCTACTTAGATCTCTGGCTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR TCA 90 bp GGACAGAGTAGGTGTCATCTATCTGGAACTCAGCAGGCTCCTCCTCCCGGTAGCCAAGGTTCTCACCTGTaGCATTGGAGATCTGGAATA +
Preference number: 2 (lower is better)
Translates to: GQSRCHLSGTQQAPPPGSQGSHL*HWRSGI
Trigger: TATTCCAGATCTCCAATGTCACAGGTGAGAACCTTG...GCTACCGGGAGGAGGAGCCTGCTGAGTTCCAGATAGATGACACCTACTCTGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
3UTR-3UTR GCA 90 bp CCCCACCAAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAATGGTCAAAGATTCTCTaGCCAGTTGGTGAGCAGTGG +
Preference number: 2 (lower is better)
Translates to: PHQRRYYKTRKTQSSSPEWSKIL*PVGEQW
Trigger: CCACTGCTCACCAACTGGGCAGAGAATCTTTGACCA...TTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTTGGTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR CCA 90 bp AAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAACTCTGAGGCAATGAGGATCCCATaGGTGGTCAAGTGGACCTGG +
Preference number: 2 (lower is better)
Translates to: KGGTTKPGRPSLVARNSEAMRIP*VVKWTW
Trigger: CCAGGTCCACTTGACCACCCATGGGATCCTCATTGC...CTCAGAGTTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR CAA 90 bp CAGGCAAGCCCAGGATTGTCTCTAAAGATGAGCCCACCTAGTTCTTaGGATCCATGGCAAGGGTCAAGAGTCAGAGTAGGTGGTCCTACA +
Preference number: 2 (lower is better)
Translates to: QASPGLSLKMSPPSS*DPWQGSRVRVGGPT
Trigger: TGTAGGACCACCTACTCTGACTCTTGACCCTTGCCATGGATCCAAAGAACTAGGTGGGCTCATCTTTAGAGACAATCCTGGGCTTGCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR TCA 90 bp AAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAACTCTGAGAAGGAAGGTGGCATGTaGCAGTCAGTCCTCGGACAT +
Preference number: 2 (lower is better)
Translates to: KGGTTKPGRPSLVARNSEKEGGM*QSVLGH
Trigger: ATGTCCGAGGACTGACTGTCACATGCCACCTTCCTT...CTCAGAGTTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR CCA 90 bp ATGGCTGTAGCGGTTGTGTTGGGTGACATTGGGAAAGGAGCATTTCTAGTCCTGCCAGTTGGTGAGCAGTaGCCAGTGAGCAATGAGGAT +
Preference number: 2 (lower is better)
Translates to: MAVAVVLGDIGKGAFLVLPVGEQ*PVSNED
Trigger: ATCCTCATTGCTCACTGGCCACTGCTCACCAACTGG...CAGGACTAGAAATGCTCCTTTCCCAATGTCACCCAACACAACCGCTACAGCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR CCA 90 bp CCCCACCAAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAAAAGAGTCAGAGTAGGTaGTCCTACAATGTAGTCCCC +
Preference number: 2 (lower is better)
Translates to: PHQRRYYKTRKTQSSSPEKSQSR*SYNVVP
Trigger: GGGGACTACATTGTAGGACCACCTACTCTGACTCTT...TTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTTGGTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR CCA 90 bp CCTGCCCTTGTATACCCCAAATGGGGCATCAGGGCTCAGACCCTTCACTGCTATAGTTCTTTGGATCCATaGCAAGGGTCAAGAGTCAGA +
Preference number: 2 (lower is better)
Translates to: PALVYPKWGIRAQTLHCYSSLDP*QGSRVR
Trigger: TCTGACTCTTGACCCTTGCCATGGATCCAAAGAACT...ATAGCAGTGAAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR CCA 90 bp ATGGCTGTAGCGGTTGTGTTGGGTGACATTGGGAAAGGAGCATTTCTAGTCCTGACAAATACAGACGGATaGAAGGACAGGCAGGCAGTC +
Preference number: 2 (lower is better)
Translates to: MAVAVVLGDIGKGAFLVLTNTDG*KDRQAV
Trigger: GACTGCCTGCCTGTCCTTCCATCCGTCTGTATTTGT...CAGGACTAGAAATGCTCCTTTCCCAATGTCACCCAACACAACCGCTACAGCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR GCA 72 bp CTGGCTGAGAAGGAGCACCCTAGCCTGAGGCGATGGTaGAGGGCTGTGCCCACACTGCTCTGGGCAGCCCAC +
Preference number: 3 (lower is better)
Translates to: LAEKEHPSLRRW*RAVPTLLWAAH
Trigger: GTGGGCTGCCCAGAGCAGTGTGGGCACAGCCCTGCACCATCGCCTCAGGCTAGGGTGCTCCTTCTCAGCCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR TCA 72 bp AGGGGTCTGGGCCCAGCAGCAGTGTGTCGTTCAGTTTaGTCAGGCCCCGCAGGGTGGTCCCAGACACCACTG +
Preference number: 3 (lower is better)
Translates to: RGLGPAAVCRSV*SGPAGWSQTPL
Trigger: CAGTGGTGTCTGGGACCACCCTGCGGGGCCTGATCAAACTGAACGACACACTGCTGCTGGGCCCAGACCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
3UTR TCA 72 bp GAGGATCTGTCCTGGCTGAGAAGGAGCACCCTAGCCTaGGGCGATGGTGCAGGGCTGTGCCCACACTGCTCT +
Preference number: 3 (lower is better)
Translates to: EDLSWLRRSTLA*GDGAGLCPHCS
Trigger: AGAGCAGTGTGGGCACAGCCCTGCACCATCGCCTCAGGCTAGGGTGCTCCTTCTCAGCCAGGACAGATCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR CAA 90 bp AGGTGGGGCTGTAGAGGGCTCCAGCCAGCTGAGGATCTGTCCTGGCTGAGAAGGCATTGCCACCTGCCCTaGTATACCCCAAATGGGGCA +
Preference number: 3 (lower is better)
Translates to: RWGCRGLQPAEDLSWLRRHCHLP*YTPNGA
Trigger: TGCCCCATTTGGGGTATACAAGGGCAGGTGGCAATG...CCTTCTCAGCCAGGACAGATCCTCAGCTGGCTGGAGCCCTCTACAGCCCCACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR CCA 72 bp AGGACTCTCTGGCTGTGGACTGGAGTGGGCCGGTGGTaGTCAAAGATTCTCTGCCCAGTTGGTGAGCAGTGG +
Preference number: 3 (lower is better)
Translates to: RTLWLWTGVGRW*SKILCPVGEQW
Trigger: CCACTGCTCACCAACTGGGCAGAGAATCTTTGACCACCACCGGCCCACTCCAGTCCACAGCCAGAGAGTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR CCA 72 bp CTGTGGCAACGAGGACTCTCTGGCTGTGGACTGGAGTaGGCCGGTGGTGGTCAAAGATTCTCTGCCCAGTTG +
Preference number: 3 (lower is better)
Translates to: LWQRGLSGCGLE*AGGGQRFSAQL
Trigger: CAACTGGGCAGAGAATCTTTGACCACCACCGGCCCACTCCAGTCCACAGCCAGAGAGTCCTCGTTGCCACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR CCA 72 bp GATGGAAGGACAGGCAGGCAGTCAGCTCTTGGAGGCTaGTGTCCAGCTAGGACCGAAACGGAGACTGACAGG +
Preference number: 3 (lower is better)
Translates to: DGRTGRQSALGG*CPARTETETDR
Trigger: CCTGTCAGTCTCCGTTTCGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCCTTCCATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR CCA 72 bp GGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCCATTaGCCAGGGAAGACAGGTGCCTTAGGCTCTGAGGTT +
Preference number: 3 (lower is better)
Translates to: GPKEGLLAKRGH*PGKTGALGSEV
Trigger: AACCTCAGAGCCTAAGGCACCTGTCTTCCCTGGCCAATGGCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR CAA 90 bp AGGTGGGGCTGTAGAGGGCTCCAGCCAGCTGAGGATCTGTCCTGGCTGAGAAGGGCTGTAGCGGTTGTGTaGGGTGACATTGGGAAAGGA +
Preference number: 3 (lower is better)
Translates to: RWGCRGLQPAEDLSWLRRAVAVV*GDIGKG
Trigger: TCCTTTCCCAATGTCACCCAACACAACCGCTACAGC...CCTTCTCAGCCAGGACAGATCCTCAGCTGGCTGGAGCCCTCTACAGCCCCACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR CAA 90 bp GCCCAGCAGCAGTGTGTCGTTCAGTTTGATCAGGCCCCGCAGGGTGGTCCCAGACTCTCAGAGCTGAAGTaGGAGGCTGTGACAATCACA +
Preference number: 3 (lower is better)
Translates to: AQQQCVVQFDQAPQGGPRLSELK*EAVTIT
Trigger: TGTGATTGTCACAGCCTCCAACTTCAGCTCTGAGAG...TCTGGGACCACCCTGCGGGGCCTGATCAAACTGAACGACACACTGCTGCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
3UTR GCA 72 bp TGGACTGGAGTGGGCCGGTGGTGGTCAAAGATTCTCTaGCCAGTTGGTGAGCAGTGGCCAGTGAGCAATGAG +
Preference number: 3 (lower is better)
Translates to: WTGVGRWWSKIL*PVGEQWPVSNE
Trigger: CTCATTGCTCACTGGCCACTGCTCACCAACTGGGCAGAGAATCTTTGACCACCACCGGCCCACTCCAGTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR TCA 72 bp GGGCCATTGGCCAGGGAAGACAGGTGCCTTAGGCTCTaGGGTTCCCTAAAGGTTCTGAGGATCTCACTGAGA +
Preference number: 3 (lower is better)
Translates to: GPLAREDRCLRL*GSLKVLRISLR
Trigger: TCTCAGTGAGATCCTCAGAACCTTTAGGGAACCTCAGAGCCTAAGGCACCTGTCTTCCCTGGCCAATGGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR CAA 90 bp CCACGCCAGGGACAGAGTAGGTGTCATCTATCTGGAACTCAGCAGGCTCCTCCTACAATCACATCATCTTaGCTCTGCACCAGGACAGGG +
Preference number: 3 (lower is better)
Translates to: PRQGQSRCHLSGTQQAPPTITSS*LCTRTG
Trigger: CCCTGTCCTGGTGCAGAGCAAAGATGATGTGATTGT...AGGAGGAGCCTGCTGAGTTCCAGATAGATGACACCTACTCTGTCCCTGGCGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
3UTR-3UTR CAA 90 bp CAGTGTGTCGTTCAGTTTGATCAGGCCCCGCAGGGTGGTCCCAGACACCACTGTTTCTCACCTGTGACATaGGAGATCTGGAATATCGGG +
Preference number: 3 (lower is better)
Translates to: QCVVQFDQAPQGGPRHHCFSPVT*EIWNIG
Trigger: CCCGATATTCCAGATCTCCAATGTCACAGGTGAGAA...ACAGTGGTGTCTGGGACCACCCTGCGGGGCCTGATCAAACTGAACGACACACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
3UTR CCA 72 bp TGGTGGTCAAAGATTCTCTGCCCAGTTGGTGAGCAGTaGCCAGTGAGCAATGAGGATCCCATGGGTGGTCAA +
Preference number: 3 (lower is better)
Translates to: WWSKILCPVGEQ*PVSNEDPMGGQ
Trigger: TTGACCACCCATGGGATCCTCATTGCTCACTGGCCACTGCTCACCAACTGGGCAGAGAATCTTTGACCACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR CCA 72 bp GGTTCTGAGGATCTCACTGAGACAAATACAGACGGATaGAAGGACAGGCAGGCAGTCAGCTCTTGGAGGCTG +
Preference number: 3 (lower is better)
Translates to: GSEDLTETNTDG*KDRQAVSSWRL
Trigger: CAGCCTCCAAGAGCTGACTGCCTGCCTGTCCTTCCATCCGTCTGTATTTGTCTCAGTGAGATCCTCAGAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR-3UTR CAA 90 bp TCAGCCAGAGATCTAAGTAGAAACAGGAAGAGCCTCCTGCGGGCACAGAAGCCACAGGCAAGCCCAGGATaGTCTCTAAAGATGAGCCCA +
Preference number: 3 (lower is better)
Translates to: SARDLSRNRKSLLRAQKPQASPG*SLKMSP
Trigger: TGGGCTCATCTTTAGAGACAATCCTGGGCTTGCCTG...TGGCTTCTGTGCCCGCAGGAGGCTCTTCCTGTTTCTACTTAGATCTCTGGCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR TCA 72 bp AGATGTACGAAAGCCGTGAGTAAGGAAGGTGGCATGTaGCAGTCAGTCCTCGGACATCTAGTCCCTCCTCAC +
Preference number: 3 (lower is better)
Translates to: RCTKAVSKEGGM*QSVLGHLVPPH
Trigger: GTGAGGAGGGACTAGATGTCCGAGGACTGACTGTCACATGCCACCTTCCTTACTCACGGCTTTCGTACATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR GCA 72 bp TCAGCTGCACTCCTGCACACACCTGCTATAGGCGTGTaGATGCACACACTCACACAGACACACATAGACACA +
Preference number: 3 (lower is better)
Translates to: SAALLHTPAIGV*MHTLTQTHIDT
Trigger: TGTGTCTATGTGTGTCTGTGTGAGTGTGTGCATGCACACGCCTATAGCAGGTGTGTGCAGGAGTGCAGCTGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR CCA 72 bp AGCAGGTCAAGGTTCTCACCTGTGACATTGGAGATCTaGAATATCGGGCACATCCTCTCAGAGCTGAAGTTG +
Preference number: 3 (lower is better)
Translates to: SRSRFSPVTLEI*NIGHILSELKL
Trigger: CAACTTCAGCTCTGAGAGGATGTGCCCGATATTCCAGATCTCCAATGTCACAGGTGAGAACCTTGACCTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS-3UTR GCA 90 bp CCAGAGGTCGGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCCATTGGCCAGGGGTCGCCGGCCCCCACTaGTGGGCTTGGGCTGTGGCT +
Preference number: 4 (lower is better)
Translates to: PEVGPKEGLLAKRGHWPGVAGPH*WAWAVA
Trigger: AGCCACAGCCCAAGCCCAGCAGTGGGGGCCGGCGAC...CCCTGGCCAATGGCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCCGACCTCTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp CCAGAGGTCGGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCCATTGGCCAGGGTTCACCTTGTGGCGCTaGCCCCCTCGTCGCCGGCCC +
Preference number: 4 (lower is better)
Translates to: PEVGPKEGLLAKRGHWPGFTLWR*PPRRRP
Trigger: GGGCCGGCGACGAGGGGGCCAGCGCCACAAGGTGAA...CCCTGGCCAATGGCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCCGACCTCTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp AAGCTGCTAAGCCCAGAGGTCGGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCCCCGACTTCACCTTGTaGCGCTGGCCCCCTCGTCGC +
Preference number: 4 (lower is better)
Translates to: KLLSPEVGPKEGLLAKRGPDFTL*RWPPRR
Trigger: GCGACGAGGGGGCCAGCGCCACAAGGTGAAGTCGGG...GCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCCGACCTCTGGGCTTAGCAGCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp ATCAGGCCCCGCAGGGTGGTCCCAGACACCACTGTCCCCACGCCAGGGACAGAGAGCCCAGATGCTCCTTaGTCATCCCCACAATGCCAG +
Preference number: 4 (lower is better)
Translates to: IRPRRVVPDTTVPTPGTESPDAP*SSPQCQ
Trigger: CTGGCATTGTGGGGATGACCAAGGAGCATCTGGGCT...CTCTGTCCCTGGCGTGGGGACAGTGGTGTCTGGGACCACCCTGCGGGGCCTGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS-3UTR CCA 90 bp AAGCTGCTAAGCCCAGAGGTCGGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCGCAAAGGAGGCTGTCTaGCCCCCGCGCACCTCCTTG +
Preference number: 4 (lower is better)
Translates to: KLLSPEVGPKEGLLAKRGAKEAV*PPRTSL
Trigger: CAAGGAGGTGCGCGGGGGCCAGACAGCCTCCTTTGC...GCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCCGACCTCTGGGCTTAGCAGCTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp GGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGCTAGGACCGAAACGGGGCTTGGGCTGTGGCTaGAGCCCACTGGTTGAGGCA +
Preference number: 4 (lower is better)
Translates to: GQAGSQLLEAGVQLGPKRGLGCG*SPLVEA
Trigger: TGCCTCAACCAGTGGGCTCCAGCCACAGCCCAAGCC...CCGTTTCGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR TCA 90 bp GGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGCTAGGACCGAAACGGCCCCGCGCACCTCCTTaGCTGGCATACGTTTGCGAT +
Preference number: 4 (lower is better)
Translates to: GQAGSQLLEAGVQLGPKRPRAPP*LAYVCD
Trigger: ATCGCAAACGTATGCCAGTCAAGGAGGTGCGCGGGG...CCGTTTCGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR GCA 90 bp AAGCTGCTAAGCCCAGAGGTCGGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCCCTCGCCGTCCTCGCTaGAGTCAGAATCGAAGCCGC +
Preference number: 4 (lower is better)
Translates to: KLLSPEVGPKEGLLAKRGPRRPR*SQNRSR
Trigger: GCGGCTTCGATTCTGACTGCAGCGAGGACGGCGAGG...GCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCCGACCTCTGGGCTTAGCAGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp GCATTGCCACCTGCCCTTGTATACCCCAAATGGGGCATCAGGGCTCAGACCCTTCCCCACTGCTGGGCTTaGGCTGTGGCTGGAGCCCAC +
Preference number: 4 (lower is better)
Translates to: ALPPALVYPKWGIRAQTLPHCWA*AVAGAH
Trigger: GTGGGCTCCAGCCACAGCCCAAGCCCAGCAGTGGGG...AAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGGTGGCAATGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
3UTR CAA 72 bp AAGGGGTCTGGGCCCAGCAGCAGTGTGTCGTTCAGTTaGATCAGGCCCCGCAGGGTGGTCCCAGACACCACT +
Preference number: 4 (lower is better)
Translates to: KGSGPSSSVSFS*IRPRRVVPDTT
Trigger: AGTGGTGTCTGGGACCACCCTGCGGGGCCTGATCAAACTGAACGACACACTGCTGCTGGGCCCAGACCCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS-3UTR TCA 90 bp AAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAACTCTGAGGCTCCGGCTCGCCGTTaGGCGCCTCGCCGTCCTCGC +
Preference number: 4 (lower is better)
Translates to: KGGTTKPGRPSLVARNSEAPARR*APRRPR
Trigger: GCGAGGACGGCGAGGCGCTCAACGGCGAGCCGGAGC...CTCAGAGTTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR TCA 90 bp AGGTGGGGCTGTAGAGGGCTCCAGCCAGCTGAGGATCTGTCCTGGCTGAGAAGGCCACCACTGCCACCCTaGCCTCCAGGAAGTCATTGT +
Preference number: 4 (lower is better)
Translates to: RWGCRGLQPAEDLSWLRRPPLPP*PPGSHC
Trigger: ACAATGACTTCCTGGAGGTCAGGGTGGCAGTGGTGG...CCTTCTCAGCCAGGACAGATCCTCAGCTGGCTGGAGCCCTCTACAGCCCCACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR TCA 90 bp GCATTGCCACCTGCCCTTGTATACCCCAAATGGGGCATCAGGGCTCAGACCCTTCTGGAGCCCACTGGTTaGGGCAGCCTGTGCAGTCCC +
Preference number: 4 (lower is better)
Translates to: ALPPALVYPKWGIRAQTLLEPTG*GSLCSP
Trigger: GGGACTGCACAGGCTGCCTCAACCAGTGGGCTCCAG...AAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGGTGGCAATGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR GCA 90 bp CCAGAGGTCGGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCCATTGGCCAGGGGGACTCCCAGGAGTGTaGTTTTGCCAGCATCCACGT +
Preference number: 4 (lower is better)
Translates to: PEVGPKEGLLAKRGHWPGGLPGV*FCQHPR
Trigger: ACGTGGATGCTGGCAAAAGCACACTCCTGGGAGTCC...CCCTGGCCAATGGCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCCGACCTCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp AGGTGGGGCTGTAGAGGGCTCCAGCCAGCTGAGGATCTGTCCTGGCTGAGAAGGCCATGCTCTTCACGGTaGCGTAGGAGGCCTCCATGT +
Preference number: 4 (lower is better)
Translates to: RWGCRGLQPAEDLSWLRRPCSSR*RRRPPC
Trigger: ACATGGAGGCCTCCTACGCCACCGTGAAGAGCATGG...CCTTCTCAGCCAGGACAGATCCTCAGCTGGCTGGAGCCCTCTACAGCCCCACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR TCA 90 bp GGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGCTAGGACCGAAACGGCATTGCTGCCCACCATaGGCATGCAGAAGTCAGGCA +
Preference number: 4 (lower is better)
Translates to: GQAGSQLLEAGVQLGPKRHCCPP*ACRSQA
Trigger: TGCCTGACTTCTGCATGCTCATGGTGGGCAGCAATG...CCGTTTCGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR TCA 90 bp CCGCAGGGTGGTCCCAGACACCACTGTCCCCACGCCAGGGACAGAGTAGGTGTCAATGCCACAATGCCTTaGAGGATGTTGGCAGGACAC +
Preference number: 4 (lower is better)
Translates to: PQGGPRHHCPHARDRVGVNATMP*RMLAGH
Trigger: GTGTCCTGCCAACATCCTTCAAGGCATTGTGGCATT...GACACCTACTCTGTCCCTGGCGTGGGGACAGTGGTGTCTGGGACCACCCTGCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS-3UTR GCA 90 bp GGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGCTAGGACCGAAACGGCCAGGAGTGTGCTTTTaGCAGCATCCACGTTGCCCA +
Preference number: 4 (lower is better)
Translates to: GQAGSQLLEAGVQLGPKRPGVCF*QHPRCP
Trigger: TGGGCAACGTGGATGCTGGCAAAAGCACACTCCTGG...CCGTTTCGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR GCA 90 bp TCGTTCAGTTTGATCAGGCCCCGCAGGGTGGTCCCAGACACCACTGTCCCCACGTGGTCATCCCCACAATaGCAGCATTGCTGCCCACCA +
Preference number: 4 (lower is better)
Translates to: SFSLIRPRRVVPDTTVPTWSSPQ*QHCCPP
Trigger: TGGTGGGCAGCAATGCTGGCATTGTGGGGATGACCA...CGTGGGGACAGTGGTGTCTGGGACCACCCTGCGGGGCCTGATCAAACTGAACGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS-3UTR CCA 90 bp AGGTGGGGCTGTAGAGGGCTCCAGCCAGCTGAGGATCTGTCCTGGCTGAGAAGGAGCCCAGATGCTCCTTaGTCATCCCCACAATGCCAG +
Preference number: 4 (lower is better)
Translates to: RWGCRGLQPAEDLSWLRRSPDAP*SSPQCQ
Trigger: CTGGCATTGTGGGGATGACCAAGGAGCATCTGGGCT...CCTTCTCAGCCAGGACAGATCCTCAGCTGGCTGGAGCCCTCTACAGCCCCACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp ATGGAAGGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGCTAGGACCGCTGGGGATTCAGGCGTaGGGAAACCATCACCATGCC +
Preference number: 4 (lower is better)
Translates to: MEGQAGSQLLEAGVQLGPLGIQA*GNHHHA
Trigger: GGCATGGTGATGGTTTCCCCACGCCTGAATCCCCAG...CGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCCTTCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp TCGTTCAGTTTGATCAGGCCCCGCAGGGTGGTCCCAGACACCACTGTCCCCACGACACGGCCTTCTCTCTaGCCAGACTTCCAGGGTAAG +
Preference number: 4 (lower is better)
Translates to: SFSLIRPRRVVPDTTVPTTRPSL*PDFQGK
Trigger: CTTACCCTGGAAGTCTGGCCAGAGAGAAGGCCGTGT...CGTGGGGACAGTGGTGTCTGGGACCACCCTGCGGGGCCTGATCAAACTGAACGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS-3UTR TCA 90 bp CCAGAGGTCGGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCCATTGGCCAGGGCTCCAACTCGTTTCCTaGCTAGGTAATCACGCACAC +
Preference number: 4 (lower is better)
Translates to: PEVGPKEGLLAKRGHWPGLQLVS*LGNHAH
Trigger: GTGTGCGTGATTACCTAGTCAGGAAACGAGTTGGAG...CCCTGGCCAATGGCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCCGACCTCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp AGGTGGGGCTGTAGAGGGCTCCAGCCAGCTGAGGATCTGTCCTGGCTGAGAAGGGCGCACCTCCTTGACTaGCATACGTTTGCGATGGAT +
Preference number: 4 (lower is better)
Translates to: RWGCRGLQPAEDLSWLRRAHLLD*HTFAMD
Trigger: ATCCATCGCAAACGTATGCCAGTCAAGGAGGTGCGC...CCTTCTCAGCCAGGACAGATCCTCAGCTGGCTGGAGCCCTCTACAGCCCCACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp AGGTGGGGCTGTAGAGGGCTCCAGCCAGCTGAGGATCTGTCCTGGCTGAGAAGGTCATGGGGGAGTTGTTaGTTGTCTGGAGGAGCTTGG +
Preference number: 4 (lower is better)
Translates to: RWGCRGLQPAEDLSWLRRSWGSC*LSGGAW
Trigger: CCAAGCTCCTCCAGACAACCAACAACTCCCCCATGA...CCTTCTCAGCCAGGACAGATCCTCAGCTGGCTGGAGCCCTCTACAGCCCCACCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp TGCCACCTGCCCTTGTATACCCCAAATGGGGCATCAGGGCTCAGACCCTTCACTCGCCGGCACCCCACATaGACCTCCTTCCTCTCGTTT +
Preference number: 4 (lower is better)
Translates to: CHLPLYTPNGASGLRPFTRRHPT*TSFLSF
Trigger: AAACGAGAGGAAGGAGGTCCATGTGGGGTGCCGGCG...AGTGAAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGGTGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR TCA 90 bp ATGGAAGGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGCTAGGACCGCTGATCCCTGCCCAATaGCATATATGGTCTCTCCGC +
Preference number: 4 (lower is better)
Translates to: MEGQAGSQLLEAGVQLGPLIPAQ*HIWSLR
Trigger: GCGGAGAGACCATATATGTCATTGGGCAGGGATCAG...CGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCCTTCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR TCA 90 bp GGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGCTAGGACCGAAACGGCAAACACAGGTACATTaGGTGCCAATGCCAAGCCCA +
Preference number: 4 (lower is better)
Translates to: GQAGSQLLEAGVQLGPKRQTQVH*VPMPSP
Trigger: TGGGCTTGGCATTGGCACTCAATGTACCTGTGTTTG...CCGTTTCGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR TCA 90 bp GTCGTTCAGTTTGATCAGGCCCCGCAGGGTGGTCCCAGACACCACTGTCCCCACCAAACACAGGTACATTaGGTGCCAATGCCAAGCCCA +
Preference number: 4 (lower is better)
Translates to: VVQFDQAPQGGPRHHCPHQTQVH*VPMPSP
Trigger: TGGGCTTGGCATTGGCACTCAATGTACCTGTGTTTG...GTGGGGACAGTGGTGTCTGGGACCACCCTGCGGGGCCTGATCAAACTGAACGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS-3UTR GCA 90 bp CCAGAGGTCGGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCCATTGGCCAGGGAGTAGGCTGTCATACTaGTCTGATGTAGGGCTCACT +
Preference number: 4 (lower is better)
Translates to: PEVGPKEGLLAKRGHWPGSRLSY*SDVGLT
Trigger: AGTGAGCCCTACATCAGAGCAGTATGACAGCCTACT...CCCTGGCCAATGGCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCCGACCTCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR GCA 90 bp CCTGCCCTTGTATACCCCAAATGGGGCATCAGGGCTCAGACCCTTCACTGCTATCACGTTGCCCACCACTaGCACCCTGACCTCCAGGAA +
Preference number: 4 (lower is better)
Translates to: PALVYPKWGIRAQTLHCYHVAHH*HPDLQE
Trigger: TTCCTGGAGGTCAGGGTGGCAGTGGTGGGCAACGTG...ATAGCAGTGAAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR GCA 90 bp CCAGAGGTCGGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCCATTGGCCAGGGCAATCACATCATCTTTaGTCTGCACCAGGACAGGGA +
Preference number: 4 (lower is better)
Translates to: PEVGPKEGLLAKRGHWPGQSHHL*SAPGQG
Trigger: TCCCTGTCCTGGTGCAGAGCAAAGATGATGTGATTG...CCCTGGCCAATGGCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCCGACCTCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp GGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGCTAGGACCGAAACGGTTGATGAAGCGGAAGTaGACAGTGGCCTTGTCTCCT +
Preference number: 4 (lower is better)
Translates to: GQAGSQLLEAGVQLGPKRLMKRK*TVALSP
Trigger: AGGAGACAAGGCCACTGTCCACTTCCGCTTCATCAA...CCGTTTCGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR GCA 90 bp GCATTGCCACCTGCCCTTGTATACCCCAAATGGGGCATCAGGGCTCAGACCCTTTGGTCATCCCCACAATaGCAGCATTGCTGCCCACCA +
Preference number: 4 (lower is better)
Translates to: ALPPALVYPKWGIRAQTLWSSPQ*QHCCPP
Trigger: TGGTGGGCAGCAATGCTGGCATTGTGGGGATGACCA...AAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGGTGGCAATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp ATGGAAGGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGCTAGGACCGGAGTTGTTGGTTGTCTaGAGGAGCTTGGTGATGGTG +
Preference number: 4 (lower is better)
Translates to: MEGQAGSQLLEAGVQLGPELLVV*RSLVMV
Trigger: CACCATCACCAAGCTCCTCCAGACAACCAACAACTC...CGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCCTTCCAT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp CCTTCACTGCTATGTGGCATGGCTGTAGCGGTTGTGTTGGGTGACATTGGGAAAGTGGCTGGAGCCCACTaGTTGAGGCAGCCTGTGCAG +
Preference number: 4 (lower is better)
Translates to: PSLLCGMAVAVVLGDIGKVAGAH*LRQPVQ
Trigger: CTGCACAGGCTGCCTCAACCAGTGGGCTCCAGCCAC...TTTCCCAATGTCACCCAACACAACCGCTACAGCCATGCCACATAGCAGTGAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR GCA 90 bp AAGCTGCTAAGCCCAGAGGTCGGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCTGTCATTGCCCACACTaGTGGTTCGACCAGATTCAA +
Preference number: 4 (lower is better)
Translates to: KLLSPEVGPKEGLLAKRGCHCPH*WFDQIQ
Trigger: TTGAATCTGGTCGAACCAGCAGTGTGGGCAATGACA...GCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCCGACCTCTGGGCTTAGCAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR GCA 90 bp TGCCACCTGCCCTTGTATACCCCAAATGGGGCATCAGGGCTCAGACCCTTCACTAATGCCAAGCCCAGATaGTCCTTGGTCATCCCCACA +
Preference number: 4 (lower is better)
Translates to: CHLPLYTPNGASGLRPFTNAKPR*SLVIPT
Trigger: TGTGGGGATGACCAAGGAGCATCTGGGCTTGGCATT...AGTGAAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGGTGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR GCA 90 bp GGACAGAGTAGGTGTCATCTATCTGGAACTCAGCAGGCTCCTCCTCCCGGTAGCAATGCCAAGCCCAGATaGTCCTTGGTCATCCCCACA +
Preference number: 4 (lower is better)
Translates to: GQSRCHLSGTQQAPPPGSNAKPR*SLVIPT
Trigger: TGTGGGGATGACCAAGGAGCATCTGGGCTTGGCATT...GCTACCGGGAGGAGGAGCCTGCTGAGTTCCAGATAGATGACACCTACTCTGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS-3UTR GCA 90 bp CAGTGTGTCGTTCAGTTTGATCAGGCCCCGCAGGGTGGTCCCAGACACCACTGTCACAGGTACATTGAGTaGCAATGCCAAGCCCAGATG +
Preference number: 4 (lower is better)
Translates to: QCVVQFDQAPQGGPRHHCHRYIE*QCQAQM
Trigger: CATCTGGGCTTGGCATTGGCACTCAATGTACCTGTG...ACAGTGGTGTCTGGGACCACCCTGCGGGGCCTGATCAAACTGAACGACACACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS-3UTR GCA 90 bp GGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGCTAGGACCGAAACGGGACTGCATTTTAATCTaGTGGGGCTTGGAGTTCATG +
Preference number: 4 (lower is better)
Translates to: GQAGSQLLEAGVQLGPKRDCILI*WGLEFM
Trigger: CATGAACTCCAAGCCCCAGCAGATTAAAATGCAGTC...CCGTTTCGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR TCA 90 bp GGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGCTAGGACCGAAACGGACATGTCAATCTTGGTaGCAACCACAAACACAGGTA +
Preference number: 4 (lower is better)
Translates to: GQAGSQLLEAGVQLGPKRTCQSW*QPQTQV
Trigger: TACCTGTGTTTGTGGTTGTCACCAAGATTGACATGT...CCGTTTCGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR TCA 90 bp GGACAGAGTAGGTGTCATCTATCTGGAACTCAGCAGGCTCCTCCTCCCGGTAGCAGGTGCACTCAATACTaGTGCAAGCAGGAGTCAGAC +
Preference number: 4 (lower is better)
Translates to: GQSRCHLSGTQQAPPPGSRCTQY*CKQESD
Trigger: GTCTGACTCCTGCTTGCATCAGTATTGAGTGCACCT...GCTACCGGGAGGAGGAGCCTGCTGAGTTCCAGATAGATGACACCTACTCTGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS-3UTR GCA 90 bp ATGGAAGGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGCTAGGACCGGTTTGTTCACTACATTaGCTTCGCTGTCAAAGCCCA +
Preference number: 4 (lower is better)
Translates to: MEGQAGSQLLEAGVQLGPVCSLH*LRCQSP
Trigger: TGGGCTTTGACAGCGAAGGCAATGTAGTGAACAAAC...CGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCCTTCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR GCA 90 bp CAGTGTGTCGTTCAGTTTGATCAGGCCCCGCAGGGTGGTCCCAGACACCACTGTTACATTGAGTGCCAATaGCAAGCCCAGATGCTCCTT +
Preference number: 4 (lower is better)
Translates to: QCVVQFDQAPQGGPRHHCYIECQ*QAQMLL
Trigger: AAGGAGCATCTGGGCTTGGCATTGGCACTCAATGTA...ACAGTGGTGTCTGGGACCACCCTGCGGGGCCTGATCAAACTGAACGACACACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS-3UTR GCA 90 bp GCATTGCCACCTGCCCTTGTATACCCCAAATGGGGCATCAGGGCTCAGACCCTTCACAGGTACATTGAGTaGCAATGCCAAGCCCAGATG +
Preference number: 4 (lower is better)
Translates to: ALPPALVYPKWGIRAQTLHRYIE*QCQAQM
Trigger: CATCTGGGCTTGGCATTGGCACTCAATGTACCTGTG...AAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGGTGGCAATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp CCCCACCAAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAATGGCGAAAGAGTTTTTaGCGGGCAAAGCCACGGCCA +
Preference number: 4 (lower is better)
Translates to: PHQRRYYKTRKTQSSSPEWRKSF*RAKPRP
Trigger: TGGCCGTGGCTTTGCCCGCCAAAAACTCTTTCGCCA...TTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTTGGTGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp CCCCACCAAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAATCGAGGCTGCCACCATaGCTGTCGGGTTTGTTCACT +
Preference number: 4 (lower is better)
Translates to: PHQRRYYKTRKTQSSSPESRLPP*LSGLFT
Trigger: AGTGAACAAACCCGACAGCCATGGTGGCAGCCTCGA...TTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTTGGTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp TGCCACCTGCCCTTGTATACCCCAAATGGGGCATCAGGGCTCAGACCCTTCACTCTAATTGTGGTGGGGTaGTGGAGGACAAGGATCTCA +
Preference number: 4 (lower is better)
Translates to: CHLPLYTPNGASGLRPFTLIVVG*WRTRIS
Trigger: TGAGATCCTTGTCCTCCACCACCCCACCACAATTAG...AGTGAAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGGTGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp CAGCAGTGTGTCGTTCAGTTTGATCAGGCCCCGCAGGGTGGTCCCAGACACCACTGCCTTGAAGGATGTTaGCAGGACACATGTCAATCT +
Preference number: 4 (lower is better)
Translates to: QQCVVQFDQAPQGGPRHHCLEGC*QDTCQS
Trigger: AGATTGACATGTGTCCTGCCAACATCCTTCAAGGCA...GTGGTGTCTGGGACCACCCTGCGGGGCCTGATCAAACTGAACGACACACTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS-3UTR GCA 90 bp CCTTCACTGCTATGTGGCATGGCTGTAGCGGTTGTGTTGGGTGACATTGGGAAAACGTCAGCCTCTATCTaGTCCGCCATGCTCTTCACG +
Preference number: 4 (lower is better)
Translates to: PSLLCGMAVAVVLGDIGKTSASI*SAMLFT
Trigger: CGTGAAGAGCATGGCGGAGCAGATAGAGGCTGACGT...TTTCCCAATGTCACCCAACACAACCGCTACAGCCATGCCACATAGCAGTGAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp CCTTCACTGCTATGTGGCATGGCTGTAGCGGTTGTGTTGGGTGACATTGGGAAATGGTGCCAACAGCCTTaGTTCGACCTTCCCGGAACA +
Preference number: 4 (lower is better)
Translates to: PSLLCGMAVAVVLGDIGKWCQQP*FDLPGT
Trigger: TGTTCCGGGAAGGTCGAACCAAGGCTGTTGGCACCA...TTTCCCAATGTCACCCAACACAACCGCTACAGCCATGCCACATAGCAGTGAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp CCCCACCAAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAAGGGGCTTGGAGTTCATaGGGGAGTTGTTGGTTGTCT +
Preference number: 4 (lower is better)
Translates to: PHQRRYYKTRKTQSSSPEGAWSS*GSCWLS
Trigger: AGACAACCAACAACTCCCCCATGAACTCCAAGCCCC...TTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTTGGTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR GCA 90 bp TCAGCCAGAGATCTAAGTAGAAACAGGAAGAGCCTCCTGCGGGCACAGAAGCCAATCCTCTCCCACATCTaGCGAAGTAGGCTGTCATAC +
Preference number: 4 (lower is better)
Translates to: SARDLSRNRKSLLRAQKPILSHI*RSRLSY
Trigger: GTATGACAGCCTACTTCGGCAGATGTGGGAGAGGAT...TGGCTTCTGTGCCCGCAGGAGGCTCTTCCTGTTTCTACTTAGATCTCTGGCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR GCA 90 bp CCTGCCCTTGTATACCCCAAATGGGGCATCAGGGCTCAGACCCTTCACTGCTATACATCATCTTTGCTCTaGACCAGGACAGGGATCTTC +
Preference number: 4 (lower is better)
Translates to: PALVYPKWGIRAQTLHCYTSSLL*TRTGIF
Trigger: GAAGATCCCTGTCCTGGTGCAGAGCAAAGATGATGT...ATAGCAGTGAAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp AAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAACTCTGAGATTGTGGTGGGGTGGTaGAGGACAAGGATCTCAGCC +
Preference number: 4 (lower is better)
Translates to: KGGTTKPGRPSLVARNSEIVVGW*RTRISA
Trigger: GGCTGAGATCCTTGTCCTCCACCACCCCACCACAAT...CTCAGAGTTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp CCCCACCAAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAACATGGCTTGGTATCGTaGACTAATTGTGGTGGGGTG +
Preference number: 4 (lower is better)
Translates to: PHQRRYYKTRKTQSSSPEHGLVS*TNCGGV
Trigger: CACCCCACCACAATTAGTCCACGATACCAAGCCATG...TTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTTGGTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp TCAGCCAGAGATCTAAGTAGAAACAGGAAGAGCCTCCTGCGGGCACAGAAGCCACGGAACACCAACCGCTaGTCTATGTGCAGATACTCT +
Preference number: 4 (lower is better)
Translates to: SARDLSRNRKSLLRAQKPRNTNR*SMCRYS
Trigger: AGAGTATCTGCACATAGACCAGCGGTTGGTGTTCCG...TGGCTTCTGTGCCCGCAGGAGGCTCTTCCTGTTTCTACTTAGATCTCTGGCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR TCA 90 bp CCACGCCAGGGACAGAGTAGGTGTCATCTATCTGGAACTCAGCAGGCTCCTCCTACATGTCAATCTTGGTaGCAACCACAAACACAGGTA +
Preference number: 4 (lower is better)
Translates to: PRQGQSRCHLSGTQQAPPTCQSW*QPQTQV
Trigger: TACCTGTGTTTGTGGTTGTCACCAAGATTGACATGT...AGGAGGAGCCTGCTGAGTTCCAGATAGATGACACCTACTCTGTCCCTGGCGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS-3UTR TCA 90 bp CCTTCACTGCTATGTGGCATGGCTGTAGCGGTTGTGTTGGGTGACATTGGGAAAAGCTTCAGGGTTTCTTaGAGGATGTTGGCAGGACAC +
Preference number: 4 (lower is better)
Translates to: PSLLCGMAVAVVLGDIGKSFRVS*RMLAGH
Trigger: GTGTCCTGCCAACATCCTTCAAGAAACCCTGAAGCT...TTTCCCAATGTCACCCAACACAACCGCTACAGCCATGCCACATAGCAGTGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR TCA 90 bp CCCCACCAAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAATGCGATGGATTGACTTaGCAGCAATGGACAGGAAGT +
Preference number: 4 (lower is better)
Translates to: PHQRRYYKTRKTQSSSPECDGLT*QQWTGS
Trigger: ACTTCCTGTCCATTGCTGTCAAGTCAATCCATCGCA...TTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTTGGTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR GCA 90 bp ATGGCTGTAGCGGTTGTGTTGGGTGACATTGGGAAAGGAGCATTTCTAGTCCTGGGGAAACCATCACCATaGCTTTCCGGATGGATGAGC +
Preference number: 4 (lower is better)
Translates to: MAVAVVLGDIGKGAFLVLGKPSP*LSGWMS
Trigger: GCTCATCCATCCGGAAAGGCATGGTGATGGTTTCCC...CAGGACTAGAAATGCTCCTTTCCCAATGTCACCCAACACAACCGCTACAGCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR GCA 90 bp TCAGCCAGAGATCTAAGTAGAAACAGGAAGAGCCTCCTGCGGGCACAGAAGCCAAGAATTGTAGCTGTTTaGCGGATGCTCCCACAGTGT +
Preference number: 4 (lower is better)
Translates to: SARDLSRNRKSLLRAQKPRIVAV*RMLPQC
Trigger: ACACTGTGGGAGCATCCGGCAAACAGCTACAATTCT...TGGCTTCTGTGCCCGCAGGAGGCTCTTCCTGTTTCTACTTAGATCTCTGGCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp TCAGCCAGAGATCTAAGTAGAAACAGGAAGAGCCTCCTGCGGGCACAGAAGCCATTAAGGTACTTCTCGTaGCCAGCCAAGTCGATGAAG +
Preference number: 4 (lower is better)
Translates to: SARDLSRNRKSLLRAQKPLRYFS*PAKSMK
Trigger: CTTCATCGACTTGGCTGGCCACGAGAAGTACCTTAA...TGGCTTCTGTGCCCGCAGGAGGCTCTTCCTGTTTCTACTTAGATCTCTGGCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp AGGGACAGAGTAGGTGTCATCTATCTGGAACTCAGCAGGCTCCTCCTCCCGGTAAGTCAGACAGACAGATaGACCAGTGTTAAATGCCAC +
Preference number: 4 (lower is better)
Translates to: RDRVGVIYLELSRLLLPVSQTDR*TSVKCH
Trigger: GTGGCATTTAACACTGGTCCATCTGTCTGTCTGACT...TACCGGGAGGAGGAGCCTGCTGAGTTCCAGATAGATGACACCTACTCTGTCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
3UTR CAA 72 bp CCTTCACTGCTATGTGGCATGGCTGTAGCGGTTGTGTaGGGTGACATTGGGAAAGGAGCATTTCTAGTCCTG +
Preference number: 4 (lower is better)
Translates to: PSLLCGMAVAVV*GDIGKGAFLVL
Trigger: CAGGACTAGAAATGCTCCTTTCCCAATGTCACCCAACACAACCGCTACAGCCATGCCACATAGCAGTGAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp TGCCACCTGCCCTTGTATACCCCAAATGGGGCATCAGGGCTCAGACCCTTCACTTTTCTTGAAGGATGTTaGCAGGACACATGTCAATCT +
Preference number: 4 (lower is better)
Translates to: CHLPLYTPNGASGLRPFTFLEGC*QDTCQS
Trigger: AGATTGACATGTGTCCTGCCAACATCCTTCAAGAAA...AGTGAAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGGTGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp CCTTCACTGCTATGTGGCATGGCTGTAGCGGTTGTGTTGGGTGACATTGGGAAAGTGACATTGGAGATCTaGAATATCGGGCACATCCTC +
Preference number: 4 (lower is better)
Translates to: PSLLCGMAVAVVLGDIGKVTLEI*NIGHIL
Trigger: GAGGATGTGCCCGATATTCCAGATCTCCAATGTCAC...TTTCCCAATGTCACCCAACACAACCGCTACAGCCATGCCACATAGCAGTGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp TCAGCCAGAGATCTAAGTAGAAACAGGAAGAGCCTCCTGCGGGCACAGAAGCCATATGTGCAGATACTCTaGGGTCTTGATGAAGCGGAA +
Preference number: 4 (lower is better)
Translates to: SARDLSRNRKSLLRAQKPYVQIL*GLDEAE
Trigger: TTCCGCTTCATCAAGACCCCAGAGTATCTGCACATA...TGGCTTCTGTGCCCGCAGGAGGCTCTTCCTGTTTCTACTTAGATCTCTGGCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR TCA 90 bp AAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAACTCTGAGACGTTTGCGATGGATTaGCTTGACAGCAATGGACAG +
Preference number: 4 (lower is better)
Translates to: KGGTTKPGRPSLVARNSETFAMD*LDSNGQ
Trigger: CTGTCCATTGCTGTCAAGTCAATCCATCGCAAACGT...CTCAGAGTTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR GCA 90 bp ATGGCTGTAGCGGTTGTGTTGGGTGACATTGGGAAAGGAGCATTTCTAGTCCTGTACATTGAGTGCCAATaGCAAGCCCAGATGCTCCTT +
Preference number: 4 (lower is better)
Translates to: MAVAVVLGDIGKGAFLVLYIECQ*QAQMLL
Trigger: AAGGAGCATCTGGGCTTGGCATTGGCACTCAATGTA...CAGGACTAGAAATGCTCCTTTCCCAATGTCACCCAACACAACCGCTACAGCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CCA 90 bp ATGGCTGTAGCGGTTGTGTTGGGTGACATTGGGAAAGGAGCATTTCTAGTCCTGCATTGCCCACACTGCTaGTTCGACCAGATTCAATCT +
Preference number: 4 (lower is better)
Translates to: MAVAVVLGDIGKGAFLVLHCPHC*FDQIQS
Trigger: AGATTGAATCTGGTCGAACCAGCAGTGTGGGCAATG...CAGGACTAGAAATGCTCCTTTCCCAATGTCACCCAACACAACCGCTACAGCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR TCA 90 bp AAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAACTCTGAGCAAGGTTCTCACCTGTaGCATTGGAGATCTGGAATA +
Preference number: 4 (lower is better)
Translates to: KGGTTKPGRPSLVARNSEQGSHL*HWRSGI
Trigger: TATTCCAGATCTCCAATGTCACAGGTGAGAACCTTG...CTCAGAGTTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR GCA 90 bp TGGAATATCGGGCACATCCTCTCAGAGCTGAAGTTGGAGGCTGTGACAATCACATGGACCAGTGTTAAATaGCACAATGCCTTGAAGGAT +
Preference number: 4 (lower is better)
Translates to: WNIGHILSELKLEAVTITWTSVK*HNALKD
Trigger: ATCCTTCAAGGCATTGTGGCATTTAACACTGGTCCA...TGTGATTGTCACAGCCTCCAACTTCAGCTCTGAGAGGATGTGCCCGATATTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS CCA 90 bp TTGAGCGCCTCGCCGTCCTCGCTGCAGTCAGAATCGAAGCCGCCATaGAGTCGGGCCGCGGCCGCGGCGGCCCGAGCCGCCCCCGGAGAG +
Preference number: 5 (lower is better)
Translates to: LSASPSSLQSESKPP*SRAAAAAARAAPGE
Trigger: CTCTCCGGGGGCGGCTCGGGCCGCCGCGGCCGCGGCCCGACTCCATGGCGGCTTCGATTCTGACTGCAGCGAGGACGGCGAGGCGCTCAA
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS CCA 90 bp CCGCTGGCAGGAGTCACACAGGCTCCCGACTTCACCTTGTGGCGCTaGCCCCCTCGTCGCCGGCCCCCACTGCTGGGCTTGGGCTGTGGC +
Preference number: 5 (lower is better)
Translates to: PLAGVTQAPDFTLWR*PPRRRPPLLGLGCG
Trigger: GCCACAGCCCAAGCCCAGCAGTGGGGGCCGGCGACGAGGGGGCCAGCGCCACAAGGTGAAGTCGGGAGCCTGTGTGACTCCTGCCAGCGG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
CDS-3UTR CAA 90 bp CCAGAGGTCGGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCCATTGGCCAGGGGTGGCGAAAGAGTTTTaGGCGGGCAAAGCCACGGCC +
Preference number: 5 (lower is better)
Translates to: PEVGPKEGLLAKRGHWPGVAKEF*AGKATA
Trigger: GGCCGTGGCTTTGCCCGCCAAAAACTCTTTCGCCAC...CCCTGGCCAATGGCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCCGACCTCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CAA 90 bp ATGGAAGGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGCTAGGACCGGCTGGAGCCCACTGGTaGAGGCAGCCTGTGCAGTCC +
Preference number: 5 (lower is better)
Translates to: MEGQAGSQLLEAGVQLGPAGAHW*RQPVQS
Trigger: GGACTGCACAGGCTGCCTCAACCAGTGGGCTCCAGC...CGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCCTTCCAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS CCA 90 bp CCACCACCATGCCCAAGGCCAAGAGAGGCCCTGCTTACCTGTGGCTaGAGCCCACTGGTTGAGGCAGCCTGTGCAGTCCCTAGTGAGGAA +
Preference number: 5 (lower is better)
Translates to: PPPCPRPREALLTCG*SPLVEAACAVPSEE
Trigger: TTCCTCACTAGGGACTGCACAGGCTGCCTCAACCAGTGGGCTCCAGCCACAGGTAAGCAGGGCCTCTCTTGGCCTTGGGCATGGTGGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229583.2
CDS CCA 90 bp GCCCAAGGCCAAGAGAGGCCCTGCTTACCTGTGGCTGGAGCCCACTaGTTGAGGCAGCCTGTGCAGTCCCTAGTGAGGAAGCTTCATCTC +
Preference number: 5 (lower is better)
Translates to: AQGQERPCLPVAGAH*LRQPVQSLVRKLHL
Trigger: GAGATGAAGCTTCCTCACTAGGGACTGCACAGGCTGCCTCAACCAGTGGGCTCCAGCCACAGGTAAGCAGGGCCTCTCTTGGCCTTGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229583.2
CDS-3UTR CAA 90 bp ATGGAAGGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGCTAGGACCGCCCAGGAGTGTGCTTTaGCCAGCATCCACGTTGCCC +
Preference number: 5 (lower is better)
Translates to: MEGQAGSQLLEAGVQLGPPRSVL*PASTLP
Trigger: GGGCAACGTGGATGCTGGCAAAAGCACACTCCTGGG...CGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCCTTCCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS CCA 90 bp GGGTGGTGGAGGACAAGGATCTCAGCCTCAAACTCCCAGGAGGCCTaGGGATTCAGGCGTGGGGAAACCATCACCATGCCTTTCCGGATG +
Preference number: 5 (lower is better)
Translates to: GWWRTRISASNSQEA*GFRRGETITMPFRM
Trigger: CATCCGGAAAGGCATGGTGATGGTTTCCCCACGCCTGAATCCCCAGGCCTCCTGGGAGTTTGAGGCTGAGATCCTTGTCCTCCACCACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
CDS-3UTR CAA 90 bp TGCCACCTGCCCTTGTATACCCCAAATGGGGCATCAGGGCTCAGACCCTTCACTTTGCCAGCATCCACGTaGCCCACCACTGCCACCCTG +
Preference number: 5 (lower is better)
Translates to: CHLPLYTPNGASGLRPFTLPAST*PTTATL
Trigger: CAGGGTGGCAGTGGTGGGCAACGTGGATGCTGGCAA...AGTGAAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGGTGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CAA 90 bp AGGTGGGGCTGTAGAGGGCTCCAGCCAGCTGAGGATCTGTCCTGGCTGAGAAGGGAGTTCATGGGGGAGTaGTTGGTTGTCTGGAGGAGC +
Preference number: 5 (lower is better)
Translates to: RWGCRGLQPAEDLSWLRREFMGE*LVVWRS
Trigger: GCTCCTCCAGACAACCAACAACTCCCCCATGAACTC...CCTTCTCAGCCAGGACAGATCCTCAGCTGGCTGGAGCCCTCTACAGCCCCACCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CAA 90 bp CCCCACCAAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAAGCTCCCGACTTCACCTaGTGGCGCTGGCCCCCTCGT +
Preference number: 5 (lower is better)
Translates to: PHQRRYYKTRKTQSSSPEAPDFT*WRWPPR
Trigger: ACGAGGGGGCCAGCGCCACAAGGTGAAGTCGGGAGC...TTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTTGGTGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS TCA 90 bp AATCACGCACACGGCCGCCCGCTTCTTGACGTTCTCGTAAGAGGATaGCGTCAGCCTCTATCTGCTCCGCCATGCTCTTCACGGTGGCGT +
Preference number: 5 (lower is better)
Translates to: NHAHGRPLLDVLVRG*RQPLSAPPCSSRWR
Trigger: ACGCCACCGTGAAGAGCATGGCGGAGCAGATAGAGGCTGACGTCATCCTCTTACGAGAACGTCAAGAAGCGGGCGGCCGTGTGCGTGATT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046463.10
ENSMUST00000229046.2
ENSMUST00000230262.2
ENSMUST00000230898.2
CDS-3UTR CAA 90 bp AAGCTGCTAAGCCCAGAGGTCGGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCAAGCCCAGAATGTCATaGCCCACACTGCTGGTTCGA +
Preference number: 5 (lower is better)
Translates to: KLLSPEVGPKEGLLAKRGKPRMS*PTLLVR
Trigger: TCGAACCAGCAGTGTGGGCAATGACATTCTGGGCTT...GCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCCGACCTCTGGGCTTAGCAGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CAA 90 bp GGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGCTAGGACCGAAACGGGGTTTGTTCACTACATaGCCTTCGCTGTCAAAGCCC +
Preference number: 5 (lower is better)
Translates to: GQAGSQLLEAGVQLGPKRGLFTT*PSLSKP
Trigger: GGGCTTTGACAGCGAAGGCAATGTAGTGAACAAACC...CCGTTTCGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CAA 90 bp AAGCTGCTAAGCCCAGAGGTCGGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCCCATGGCTGTCGGGTTaGTTCACTACATTGCCTTCG +
Preference number: 5 (lower is better)
Translates to: KLLSPEVGPKEGLLAKRGPWLSG*FTTLPS
Trigger: CGAAGGCAATGTAGTGAACAAACCCGACAGCCATGG...GCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCCGACCTCTGGGCTTAGCAGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CAA 90 bp AGGTGGGGCTGTAGAGGGCTCCAGCCAGCTGAGGATCTGTCCTGGCTGAGAAGGACTTCTCACAGATCTTaGTCCATTCGAGGCTGCCAC +
Preference number: 5 (lower is better)
Translates to: RWGCRGLQPAEDLSWLRRTSHRS*SIRGCH
Trigger: GTGGCAGCCTCGAATGGACAAAGATCTGTGAGAAGT...CCTTCTCAGCCAGGACAGATCCTCAGCTGGCTGGAGCCCTCTACAGCCCCACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CAA 90 bp AGTTTGATCAGGCCCCGCAGGGTGGTCCCAGACACCACTGTCCCCACGCCAGGGGGACACATGTCAATCTaGGTGACAACCACAAACACA +
Preference number: 5 (lower is better)
Translates to: SLIRPRRVVPDTTVPTPGGHMSI*VTTTNT
Trigger: TGTGTTTGTGGTTGTCACCAAGATTGACATGTGTCC...CCCTGGCGTGGGGACAGTGGTGTCTGGGACCACCCTGCGGGGCCTGATCAAACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS-3UTR CAA 90 bp GGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGCTAGGACCGAAACGGACAATCACATCATCTTaGCTCTGCACCAGGACAGGG +
Preference number: 5 (lower is better)
Translates to: GQAGSQLLEAGVQLGPKRTITSS*LCTRTG
Trigger: CCCTGTCCTGGTGCAGAGCAAAGATGATGTGATTGT...CCGTTTCGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CAA 90 bp TGCCACCTGCCCTTGTATACCCCAAATGGGGCATCAGGGCTCAGACCCTTCACTATGGTGCCAACAGCCTaGGTTCGACCTTCCCGGAAC +
Preference number: 5 (lower is better)
Translates to: CHLPLYTPNGASGLRPFTMVPTA*VRPSRN
Trigger: GTTCCGGGAAGGTCGAACCAAGGCTGTTGGCACCAT...AGTGAAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGGTGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CAA 90 bp AAGCTGCTAAGCCCAGAGGTCGGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCTTAATCTGCTGGGGCTaGGAGTTCATGGGGGAGTTG +
Preference number: 5 (lower is better)
Translates to: KLLSPEVGPKEGLLAKRGLICWG*EFMGEL
Trigger: CAACTCCCCCATGAACTCCAAGCCCCAGCAGATTAA...GCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCCGACCTCTGGGCTTAGCAGCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS GCA 90 bp CCCTCGTCCATCCTCTCCCACATCTGCCGAAGTAGGCTGTCATACTaGTCTGATGTAGGGCTCACTAGAACCAGCTTGCTGGTGAGGTCC +
Preference number: 5 (lower is better)
Translates to: PSSILSHICRSRLSY*SDVGLTRTSLLVRS
Trigger: GGACCTCACCAGCAAGCTGGTTCTAGTGAGCCCTACATCAGAGCAGTATGACAGCCTACTTCGGCAGATGTGGGAGAGGATGGACGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS GCA 90 bp ACAGCCTTGGTTCGACCTTCCCGGAACACCAACCGCTGGTCTATGTaGAGATACTCTGGGGTCTTGATGAAGCGGAAGTGGACAGTGGCC +
Preference number: 5 (lower is better)
Translates to: TALVRPSRNTNRWSM*RYSGVLMKRKWTVA
Trigger: GGCCACTGTCCACTTCCGCTTCATCAAGACCCCAGAGTATCTGCACATAGACCAGCGGTTGGTGTTCCGGGAAGGTCGAACCAAGGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS CCA 90 bp CAGTGTACCATGGCTTGGTATCGTGGACTAATTGTGGTGGGGTGGTaGAGGACAAGGATCTCAGCCTCAAACTCCCAGGAGGCCTGGGGA +
Preference number: 5 (lower is better)
Translates to: QCTMAWYRGLIVVGW*RTRISASNSQEAWG
Trigger: TCCCCAGGCCTCCTGGGAGTTTGAGGCTGAGATCCTTGTCCTCCACCACCCCACCACAATTAGTCCACGATACCAAGCCATGGTACACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS CCA 90 bp CCACAGTGTACCATGGCTTGGTATCGTGGACTAATTGTGGTGGGGTaGTGGAGGACAAGGATCTCAGCCTCAAACTCCCAGGAGGCCTGG +
Preference number: 5 (lower is better)
Translates to: PQCTMAWYRGLIVVG*WRTRISASNSQEAW
Trigger: CCAGGCCTCCTGGGAGTTTGAGGCTGAGATCCTTGTCCTCCACCACCCCACCACAATTAGTCCACGATACCAAGCCATGGTACACTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS-3UTR CAA 90 bp AAGCTGCTAAGCCCAGAGGTCGGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCACCTCCAGGAAGTCATaGTCTCCAACTCGTTTCCTG +
Preference number: 5 (lower is better)
Translates to: KLLSPEVGPKEGLLAKRGTSRKS*SPTRFL
Trigger: CAGGAAACGAGTTGGAGACAATGACTTCCTGGAGGT...GCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCCGACCTCTGGGCTTAGCAGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CAA 90 bp AGAGTAGGTGTCATCTATCTGGAACTCAGCAGGCTCCTCCTCCCGGTAGCTGGTCCCACAATGCCAGCATaGCTGCCCACCATGAGCATG +
Preference number: 5 (lower is better)
Translates to: RVGVIYLELSRLLLPVAGPTMPA*LPTMSM
Trigger: CATGCTCATGGTGGGCAGCAATGCTGGCATTGTGGG...ACCAGCTACCGGGAGGAGGAGCCTGCTGAGTTCCAGATAGATGACACCTACTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS-3UTR CAA 90 bp CCAGAGGTCGGCCCCAAAGAAGGGCTGCTAGCTAAGAGGGGCCATTGGCCAGGGGGACACATGTCAATCTaGGTGACAACCACAAACACA +
Preference number: 5 (lower is better)
Translates to: PEVGPKEGLLAKRGHWPGGHMSI*VTTTNT
Trigger: TGTGTTTGTGGTTGTCACCAAGATTGACATGTGTCC...CCCTGGCCAATGGCCCCTCTTAGCTAGCAGCCCTTCTTTGGGGCCGACCTCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CAA 90 bp GGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGCTAGGACCGAAACGGTTCTCACCTGTGACATaGGAGATCTGGAATATCGGG +
Preference number: 5 (lower is better)
Translates to: GQAGSQLLEAGVQLGPKRFSPVT*EIWNIG
Trigger: CCCGATATTCCAGATCTCCAATGTCACAGGTGAGAA...CCGTTTCGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CAA 90 bp ATGGAAGGACAGGCAGGCAGTCAGCTCTTGGAGGCTGGTGTCCAGCTAGGACCGAGATACTCTGGGGTCTaGATGAAGCGGAAGTGGACA +
Preference number: 5 (lower is better)
Translates to: MEGQAGSQLLEAGVQLGPRYSGV*MKRKWT
Trigger: TGTCCACTTCCGCTTCATCAAGACCCCAGAGTATCT...CGGTCCTAGCTGGACACCAGCCTCCAAGAGCTGACTGCCTGCCTGTCCTTCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS CCA 90 bp CGGATGGATGAGCGCTTTATCTTCTTCAGTGCAAAGGAGGCTGTCTaGCCCCCGCGCACCTCCTTGACTGGCATACGTTTGCGATGGATT +
Preference number: 5 (lower is better)
Translates to: RMDERFIFFSAKEAV*PPRTSLTGIRLRWI
Trigger: AATCCATCGCAAACGTATGCCAGTCAAGGAGGTGCGCGGGGGCCAGACAGCCTCCTTTGCACTGAAGAAGATAAAGCGCTCATCCATCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS CCA 90 bp TCGACCTTCCCGGAACACCAACCGCTGGTCTATGTGCAGATACTCTaGGGTCTTGATGAAGCGGAAGTGGACAGTGGCCTTGTCTCCTGT +
Preference number: 5 (lower is better)
Translates to: STFPEHQPLVYVQIL*GLDEAEVDSGLVSC
Trigger: ACAGGAGACAAGGCCACTGTCCACTTCCGCTTCATCAAGACCCCAGAGTATCTGCACATAGACCAGCGGTTGGTGTTCCGGGAAGGTCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS CCA 90 bp ATGGTGCCAACAGCCTTGGTTCGACCTTCCCGGAACACCAACCGCTaGTCTATGTGCAGATACTCTGGGGTCTTGATGAAGCGGAAGTGG +
Preference number: 5 (lower is better)
Translates to: MVPTALVRPSRNTNR*SMCRYSGVLMKRKW
Trigger: CCACTTCCGCTTCATCAAGACCCCAGAGTATCTGCACATAGACCAGCGGTTGGTGTTCCGGGAAGGTCGAACCAAGGCTGTTGGCACCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS-3UTR CAA 90 bp AGAGTAGGTGTCATCTATCTGGAACTCAGCAGGCTCCTCCTCCCGGTAGCTGGTAAGCCCAGATGCTCCTaGGTCATCCCCACAATGCCA +
Preference number: 5 (lower is better)
Translates to: RVGVIYLELSRLLLPVAGKPRCS*VIPTMP
Trigger: TGGCATTGTGGGGATGACCAAGGAGCATCTGGGCTT...ACCAGCTACCGGGAGGAGGAGCCTGCTGAGTTCCAGATAGATGACACCTACTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS GCA 90 bp TCCATTCGAGGCTGCCACCATGGCTGTCGGGTTTGTTCACTACATTaGCTTCGCTGTCAAAGCCCAGAATGTCATTGCCCACACTGCTGG +
Preference number: 5 (lower is better)
Translates to: SIRGCHHGCRVCSLH*LRCQSPECHCPHCW
Trigger: CCAGCAGTGTGGGCAATGACATTCTGGGCTTTGACAGCGAAGGCAATGTAGTGAACAAACCCGACAGCCATGGTGGCAGCCTCGAATGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CAA 90 bp AAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAACTCTGAGGCAAAGCCACGGCCATaGTCCAGCTCCCCGTGTGTT +
Preference number: 5 (lower is better)
Translates to: KGGTTKPGRPSLVARNSEAKPRP*SSSPCV
Trigger: AACACACGGGGAGCTGGACAATGGCCGTGGCTTTGC...CTCAGAGTTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CAA 90 bp CCTTCACTGCTATGTGGCATGGCTGTAGCGGTTGTGTTGGGTGACATTGGGAAACCCACAATGCCAGCATaGCTGCCCACCATGAGCATG +
Preference number: 5 (lower is better)
Translates to: PSLLCGMAVAVVLGDIGKPTMPA*LPTMSM
Trigger: CATGCTCATGGTGGGCAGCAATGCTGGCATTGTGGG...TTTCCCAATGTCACCCAACACAACCGCTACAGCCATGCCACATAGCAGTGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CAA 90 bp TGCCACCTGCCCTTGTATACCCCAAATGGGGCATCAGGGCTCAGACCCTTCACTCAGCTTCAGGGTTTCTaGAAGGATGTTGGCAGGACA +
Preference number: 5 (lower is better)
Translates to: CHLPLYTPNGASGLRPFTQLQGF*KDVGRT
Trigger: TGTCCTGCCAACATCCTTCAAGAAACCCTGAAGCTG...AGTGAAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGGTGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CAA 90 bp GCATTGCCACCTGCCCTTGTATACCCCAAATGGGGCATCAGGGCTCAGACCCTTCTCTCAGAGCTGAAGTaGGAGGCTGTGACAATCACA +
Preference number: 5 (lower is better)
Translates to: ALPPALVYPKWGIRAQTLLSELK*EAVTIT
Trigger: TGTGATTGTCACAGCCTCCAACTTCAGCTCTGAGAG...AAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGGTGGCAATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CAA 90 bp CCTGCCCTTGTATACCCCAAATGGGGCATCAGGGCTCAGACCCTTCACTGCTATCAGAATTGTAGCTGTTaGCCGGATGCTCCCACAGTG +
Preference number: 5 (lower is better)
Translates to: PALVYPKWGIRAQTLHCYQNCSC*PDAPTV
Trigger: CACTGTGGGAGCATCCGGCAAACAGCTACAATTCTG...ATAGCAGTGAAGGGTCTGAGCCCTGATGCCCCATTTGGGGTATACAAGGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS GCA 90 bp ACAACCACAAACACAGGTACATTGAGTGCCAATGCCAAGCCCAGATaGTCCTTGGTCATCCCCACAATGCCAGCATTGCTGCCCACCATG +
Preference number: 5 (lower is better)
Translates to: TTTNTGTLSANAKPR*SLVIPTMPALLPTM
Trigger: CATGGTGGGCAGCAATGCTGGCATTGTGGGGATGACCAAGGAGCATCTGGGCTTGGCATTGGCACTCAATGTACCTGTGTTTGTGGTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000231095.2
CDS CCA 90 bp CGCTGGTCTATGTGCAGATACTCTGGGGTCTTGATGAAGCGGAAGTaGACAGTGGCCTTGTCTCCTGTGCGCAGACAGTCTTTATCCATG +
Preference number: 5 (lower is better)
Translates to: RWSMCRYSGVLMKRK*TVALSPVRRQSLSM
Trigger: CATGGATAAAGACTGTCTGCGCACAGGAGACAAGGCCACTGTCCACTTCCGCTTCATCAAGACCCCAGAGTATCTGCACATAGACCAGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS-3UTR CAA 90 bp AGGGACAGAGTAGGTGTCATCTATCTGGAACTCAGCAGGCTCCTCCTCCCGGTAACTTCTCACAGATCTTaGTCCATTCGAGGCTGCCAC +
Preference number: 5 (lower is better)
Translates to: RDRVGVIYLELSRLLLPVTSHRS*SIRGCH
Trigger: GTGGCAGCCTCGAATGGACAAAGATCTGTGAGAAGT...TACCGGGAGGAGGAGCCTGCTGAGTTCCAGATAGATGACACCTACTCTGTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS-3UTR CAA 90 bp ATGGCTGTAGCGGTTGTGTTGGGTGACATTGGGAAAGGAGCATTTCTAGTCCTGAAGTGGACAGTGGCCTaGTCTCCTGTGCGCAGACAG +
Preference number: 5 (lower is better)
Translates to: MAVAVVLGDIGKGAFLVLKWTVA*SPVRRQ
Trigger: CTGTCTGCGCACAGGAGACAAGGCCACTGTCCACTT...CAGGACTAGAAATGCTCCTTTCCCAATGTCACCCAACACAACCGCTACAGCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS GCA 90 bp ACATATATGGTCTCTCCGCATCCCTCGTCCATCCTCTCCCACATCTaGCGAAGTAGGCTGTCATACTGCTCTGATGTAGGGCTCACTAGA +
Preference number: 5 (lower is better)
Translates to: TYMVSPHPSSILSHI*RSRLSYCSDVGLTR
Trigger: TCTAGTGAGCCCTACATCAGAGCAGTATGACAGCCTACTTCGGCAGATGTGGGAGAGGATGGACGAGGGATGCGGAGAGACCATATATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS CCA 90 bp TTAGAGGACTTCTCACAGATCTTTGTCCATTCGAGGCTGCCACCATaGCTGTCGGGTTTGTTCACTACATTGCCTTCGCTGACCTCCAGG +
Preference number: 5 (lower is better)
Translates to: LEDFSQIFVHSRLPP*LSGLFTTLPSLTSR
Trigger: CCTGGAGGTCAGCGAAGGCAATGTAGTGAACAAACCCGACAGCCATGGTGGCAGCCTCGAATGGACAAAGATCTGTGAGAAGTCCTCTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230262.2
CDS-3UTR CAA 90 bp ATGGCTGTAGCGGTTGTGTTGGGTGACATTGGGAAAGGAGCATTTCTAGTCCTGAAGCCCAGATGCTCCTaGGTCATCCCCACAATGCCA +
Preference number: 5 (lower is better)
Translates to: MAVAVVLGDIGKGAFLVLKPRCS*VIPTMP
Trigger: TGGCATTGTGGGGATGACCAAGGAGCATCTGGGCTT...CAGGACTAGAAATGCTCCTTTCCCAATGTCACCCAACACAACCGCTACAGCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS GCA 90 bp CCTGTGCGCAGACAGTCTTTATCCATGCTCAGAATTGTAGCTGTTTaGCGGATGCTCCCACAGTGTACCATGGCTTGGTATCGTGGACTA +
Preference number: 5 (lower is better)
Translates to: PVRRQSLSMLRIVAV*RMLPQCTMAWYRGL
Trigger: TAGTCCACGATACCAAGCCATGGTACACTGTGGGAGCATCCGGCAAACAGCTACAATTCTGAGCATGGATAAAGACTGTCTGCGCACAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS CCA 90 bp TTAGAGGACTTCTCACAGATCTTTGTCCATTCGAGGCTGCCACCATaGCTGTCGGGTTTGTTCACTACATTGCCTTCGCTGTCAAAGCCC +
Preference number: 5 (lower is better)
Translates to: LEDFSQIFVHSRLPP*LSGLFTTLPSLSKP
Trigger: GGGCTTTGACAGCGAAGGCAATGTAGTGAACAAACCCGACAGCCATGGTGGCAGCCTCGAATGGACAAAGATCTGTGAGAAGTCCTCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS-3UTR CAA 90 bp AAAGGAGGTACTACAAAACCAGGAAGACCCAGTCTAGTAGCCCGGAACTCTGAGTTCATGGGGGAGTTGTaGGTTGTCTGGAGGAGCTTG +
Preference number: 5 (lower is better)
Translates to: KGGTTKPGRPSLVARNSEFMGEL*VVWRSL
Trigger: CAAGCTCCTCCAGACAACCAACAACTCCCCCATGAA...CTCAGAGTTCCGGGCTACTAGACTGGGTCTTCCTGGTTTTGTAGTACCTCCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS GCA 90 bp GTCAATCTTGGTGACAACCACAAACACAGGTACATTGAGTGCCAATaGCAAGCCCAGATGCTCCTTGGTCATCCCCACAATGCCAGCATT +
Preference number: 5 (lower is better)
Translates to: VNLGDNHKHRYIECQ*QAQMLLGHPHNASI
Trigger: AATGCTGGCATTGTGGGGATGACCAAGGAGCATCTGGGCTTGGCATTGGCACTCAATGTACCTGTGTTTGTGGTTGTCACCAAGATTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000231095.2
CDS GCA 90 bp ACACATGTCAATCTTGGTGACAACCACAAACACAGGTACATTGAGTaGCAATGCCAAGCCCAGATGCTCCTTGGTCATCCCCACAATGCC +
Preference number: 5 (lower is better)
Translates to: THVNLGDNHKHRYIE*QCQAQMLLGHPHNA
Trigger: GGCATTGTGGGGATGACCAAGGAGCATCTGGGCTTGGCATTGGCACTCAATGTACCTGTGTTTGTGGTTGTCACCAAGATTGACATGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000231095.2
CDS CCA 90 bp ACAGGTGCACTCAATACTGATGCAAGCAGGAGTCAGACAGACAGATaGACCAGTGTTAAATGCCACAATGCCTTGAAGGATGTTGGCAGG +
Preference number: 5 (lower is better)
Translates to: TGALNTDASRSQTDR*TSVKCHNALKDVGR
Trigger: CCTGCCAACATCCTTCAAGGCATTGTGGCATTTAACACTGGTCCATCTGTCTGTCTGACTCCTGCTTGCATCAGTATTGAGTGCACCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231095.2
CDS GCA 90 bp CTACATTGCCTTCGCTGTCAAAGCCCAGAATGTCATTGCCCACACTaGTGGTTCGACCAGATTCAATCTCATGTTTGTGGCGAAAGAGTT +
Preference number: 5 (lower is better)
Translates to: LHCLRCQSPECHCPH*WFDQIQSHVCGERV
Trigger: AACTCTTTCGCCACAAACATGAGATTGAATCTGGTCGAACCAGCAGTGTGGGCAATGACATTCTGGGCTTTGACAGCGAAGGCAATGTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000229046.2
CDS GCA 90 bp GTTTGTTCACTACATTGCCTTCGCTGTCAAAGCCCAGAATGTCATTaGCCACACTGCTGGTTCGACCAGATTCAATCTCATGTTTGTGGC +
Preference number: 5 (lower is better)
Translates to: VCSLHCLRCQSPECH*PHCWFDQIQSHVCG
Trigger: GCCACAAACATGAGATTGAATCTGGTCGAACCAGCAGTGTGGGCAATGACATTCTGGGCTTTGACAGCGAAGGCAATGTAGTGAACAAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS CCA 90 bp CATTGCCTTCGCTGTCAAAGCCCAGAATGTCATTGCCCACACTGCTaGTTCGACCAGATTCAATCTCATGTTTGTGGCGAAAGAGTTTTT +
Preference number: 5 (lower is better)
Translates to: HCLRCQSPECHCPHC*FDQIQSHVCGERVF
Trigger: AAAAACTCTTTCGCCACAAACATGAGATTGAATCTGGTCGAACCAGCAGTGTGGGCAATGACATTCTGGGCTTTGACAGCGAAGGCAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000229046.2
CDS CCA 72 bp TCGCCGTCCTCGCTGCAGTCAGAATCGAAGCCGCCATaGAGTCGGGCCGCGGCCGCGGCGGCCCGAGCCGCC +
Preference number: 6 (lower is better)
Translates to: SPSSLQSESKPP*SRAAAAAARAA
Trigger: GGCGGCTCGGGCCGCCGCGGCCGCGGCCCGACTCCATGGCGGCTTCGATTCTGACTGCAGCGAGGACGGCGA
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS CCA 72 bp GGAGTCACACAGGCTCCCGACTTCACCTTGTGGCGCTaGCCCCCTCGTCGCCGGCCCCCACTGCTGGGCTTG +
Preference number: 6 (lower is better)
Translates to: GVTQAPDFTLWR*PPRRRPPLLGL
Trigger: CAAGCCCAGCAGTGGGGGCCGGCGACGAGGGGGCCAGCGCCACAAGGTGAAGTCGGGAGCCTGTGTGACTCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
CDS CCA 72 bp CCCCACTGCTGGGCTTGGGCTGTGGCTGGAGCCCACTaGTTGAGGCAGCCTGTGCAGTCCCTAGTGAGGAAG +
Preference number: 6 (lower is better)
Translates to: PHCWAWAVAGAH*LRQPVQSLVRK
Trigger: CTTCCTCACTAGGGACTGCACAGGCTGCCTCAACCAGTGGGCTCCAGCCACAGCCCAAGCCCAGCAGTGGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
CDS CAA 90 bp CTCACTAGAACCAGCTTGCTGGTGAGGTCCAGCTCCGGCTCGCCGTaGAGCGCCTCGCCGTCCTCGCTGCAGTCAGAATCGAAGCCGCCA +
Preference number: 6 (lower is better)
Translates to: LTRTSLLVRSSSGSP*SASPSSLQSESKPP
Trigger: TGGCGGCTTCGATTCTGACTGCAGCGAGGACGGCGAGGCGCTCAACGGCGAGCCGGAGCTGGACCTCACCAGCAAGCTGGTTCTAGTGAG
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS CCA 72 bp TGCCCAAGGCCAAGAGAGGCCCTGCTTACCTGTGGCTaGAGCCCACTGGTTGAGGCAGCCTGTGCAGTCCCT +
Preference number: 6 (lower is better)
Translates to: CPRPREALLTCG*SPLVEAACAVP
Trigger: AGGGACTGCACAGGCTGCCTCAACCAGTGGGCTCCAGCCACAGGTAAGCAGGGCCTCTCTTGGCCTTGGGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229583.2
CDS CCA 72 bp CGTCAGCCTCTATCTGCTCCGCCATGCTCTTCACGGTaGCGTAGGAGGCCTCCATGTCAGCTTCACTCAGCC +
Preference number: 6 (lower is better)
Translates to: RQPLSAPPCSSR*RRRPPCQLHSA
Trigger: GGCTGAGTGAAGCTGACATGGAGGCCTCCTACGCCACCGTGAAGAGCATGGCGGAGCAGATAGAGGCTGACG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046463.10
ENSMUST00000229046.2
ENSMUST00000230262.2
ENSMUST00000230898.2
CDS CCA 72 bp CAAGAGAGGCCCTGCTTACCTGTGGCTGGAGCCCACTaGTTGAGGCAGCCTGTGCAGTCCCTAGTGAGGAAG +
Preference number: 6 (lower is better)
Translates to: QERPCLPVAGAH*LRQPVQSLVRK
Trigger: CTTCCTCACTAGGGACTGCACAGGCTGCCTCAACCAGTGGGCTCCAGCCACAGGTAAGCAGGGCCTCTCTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229583.2
CDS CAA 72 bp AGCTCCCCGTGTGTTAGGACTCCCAGGAGTGTGCTTTaGCCAGCATCCACGTTGCCCACCACTGCCACCCTG +
Preference number: 6 (lower is better)
Translates to: SSPCVRTPRSVL*PASTLPTTATL
Trigger: CAGGGTGGCAGTGGTGGGCAACGTGGATGCTGGCAAAAGCACACTCCTGGGAGTCCTAACACACGGGGAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000229046.2
CDS CAA 72 bp GAGAGGCCCTGCTTACCTGTGGCTGGAGCCCACTGGTaGAGGCAGCCTGTGCAGTCCCTAGTGAGGAAGCTT +
Preference number: 6 (lower is better)
Translates to: ERPCLPVAGAHW*RQPVQSLVRKL
Trigger: AAGCTTCCTCACTAGGGACTGCACAGGCTGCCTCAACCAGTGGGCTCCAGCCACAGGTAAGCAGGGCCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229583.2
CDS CAA 90 bp CAAGGCCAAGAGAGGCCCTGCTTACCTGTGGCTGGAGCCCACTGGTaGAGGCAGCCTGTGCAGTCCCTAGTGAGGAAGCTTCATCTCCAG +
Preference number: 6 (lower is better)
Translates to: QGQERPCLPVAGAHW*RQPVQSLVRKLHLQ
Trigger: CTGGAGATGAAGCTTCCTCACTAGGGACTGCACAGGCTGCCTCAACCAGTGGGCTCCAGCCACAGGTAAGCAGGGCCTCTCTTGGCCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229583.2
CDS TCA 72 bp CACGGCCGCCCGCTTCTTGACGTTCTCGTAAGAGGATaGCGTCAGCCTCTATCTGCTCCGCCATGCTCTTCA +
Preference number: 6 (lower is better)
Translates to: HGRPLLDVLVRG*RQPLSAPPCSS
Trigger: TGAAGAGCATGGCGGAGCAGATAGAGGCTGACGTCATCCTCTTACGAGAACGTCAAGAAGCGGGCGGCCGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046463.10
ENSMUST00000229046.2
ENSMUST00000230262.2
ENSMUST00000230898.2
CDS CAA 72 bp TGGCGAAAGAGTTTTTGGCGGGCAAAGCCACGGCCATaGTCCAGCTCCCCGTGTGTTAGGACTCCCAGGAGT +
Preference number: 6 (lower is better)
Translates to: WRKSFWRAKPRP*SSSPCVRTPRS
Trigger: ACTCCTGGGAGTCCTAACACACGGGGAGCTGGACAATGGCCGTGGCTTTGCCCGCCAAAAACTCTTTCGCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000229046.2
CDS CAA 90 bp AAGGAGGCTGTCTGGCCCCCGCGCACCTCCTTGACTGGCATACGTTaGCGATGGATTGACTTGACAGCAATGGACAGGAAGTTCCCCAAG +
Preference number: 6 (lower is better)
Translates to: KEAVWPPRTSLTGIR*RWIDLTAMDRKFPK
Trigger: CTTGGGGAACTTCCTGTCCATTGCTGTCAAGTCAATCCATCGCAAACGTATGCCAGTCAAGGAGGTGCGCGGGGGCCAGACAGCCTCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS CAA 90 bp TCCCGGAACACCAACCGCTGGTCTATGTGCAGATACTCTGGGGTCTaGATGAAGCGGAAGTGGACAGTGGCCTTGTCTCCTGTGCGCAGA +
Preference number: 6 (lower is better)
Translates to: SRNTNRWSMCRYSGV*MKRKWTVALSPVRR
Trigger: TCTGCGCACAGGAGACAAGGCCACTGTCCACTTCCGCTTCATCAAGACCCCAGAGTATCTGCACATAGACCAGCGGTTGGTGTTCCGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS GCA 72 bp GTCTCTCCGCATCCCTCGTCCATCCTCTCCCACATCTaGCGAAGTAGGCTGTCATACTGCTCTGATGTAGGG +
Preference number: 6 (lower is better)
Translates to: VSPHPSSILSHI*RSRLSYCSDVG
Trigger: CCCTACATCAGAGCAGTATGACAGCCTACTTCGGCAGATGTGGGAGAGGATGGACGAGGGATGCGGAGAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS CCA 72 bp GAGCGCTTTATCTTCTTCAGTGCAAAGGAGGCTGTCTaGCCCCCGCGCACCTCCTTGACTGGCATACGTTTG +
Preference number: 6 (lower is better)
Translates to: ERFIFFSAKEAV*PPRTSLTGIRL
Trigger: CAAACGTATGCCAGTCAAGGAGGTGCGCGGGGGCCAGACAGCCTCCTTTGCACTGAAGAAGATAAAGCGCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS CAA 72 bp GGTACATTGAGTGCCAATGCCAAGCCCAGATGCTCCTaGGTCATCCCCACAATGCCAGCATTGCTGCCCACC +
Preference number: 6 (lower is better)
Translates to: GTLSANAKPRCS*VIPTMPALLPT
Trigger: GGTGGGCAGCAATGCTGGCATTGTGGGGATGACCAAGGAGCATCTGGGCTTGGCATTGGCACTCAATGTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000230262.2
ENSMUST00000231095.2
CDS CAA 72 bp TTAATCTGCTGGGGCTTGGTGATGGTGCCAACAGCCTaGGTTCGACCTTCCCGGAACACCAACCGCTGGTCT +
Preference number: 6 (lower is better)
Translates to: LICWGLVMVPTA*VRPSRNTNRWS
Trigger: AGACCAGCGGTTGGTGTTCCGGGAAGGTCGAACCAAGGCTGTTGGCACCATCACCAAGCCCCAGCAGATTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228991.2
CDS TCA 72 bp TCAGCCCGTACTCAGTCCCATCTGATCCCTGCCCAATaGCATATATGGTCTCTCCGCATCCCTCGTCCATCC +
Preference number: 6 (lower is better)
Translates to: SARTQSHLIPAQ*HIWSLRIPRPS
Trigger: GGATGGACGAGGGATGCGGAGAGACCATATATGTCATTGGGCAGGGATCAGATGGGACTGAGTACGGGCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000046463.10
ENSMUST00000229046.2
ENSMUST00000230262.2
ENSMUST00000230898.2
CDS GCA 72 bp GTTCGACCTTCCCGGAACACCAACCGCTGGTCTATGTaGAGATACTCTGGGGTCTTGATGAAGCGGAAGTGG +
Preference number: 6 (lower is better)
Translates to: VRPSRNTNRWSM*RYSGVLMKRKW
Trigger: CCACTTCCGCTTCATCAAGACCCCAGAGTATCTGCACATAGACCAGCGGTTGGTGTTCCGGGAAGGTCGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS CCA 72 bp CTTGACAGCAATGGACAGGAAGTTCCCCAAGGGGTCTaGGCCCAGCAGCAGTGTGTCGTTCAGTTTGATCAG +
Preference number: 6 (lower is better)
Translates to: LDSNGQEVPQGV*AQQQCVVQFDQ
Trigger: CTGATCAAACTGAACGACACACTGCTGCTGGGCCCAGACCCCTTGGGGAACTTCCTGTCCATTGCTGTCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS CCA 72 bp CCGGATGCTCCCACAGTGTACCATGGCTTGGTATCGTaGACTAATTGTGGTGGGGTGGTGGAGGACAAGGAT +
Preference number: 6 (lower is better)
Translates to: PDAPTVYHGLVS*TNCGGVVEDKD
Trigger: ATCCTTGTCCTCCACCACCCCACCACAATTAGTCCACGATACCAAGCCATGGTACACTGTGGGAGCATCCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS CCA 72 bp CCGGAACACCAACCGCTGGTCTATGTGCAGATACTCTaGGGTCTTGATGAAGCGGAAGTGGACAGTGGCCTT +
Preference number: 6 (lower is better)
Translates to: PEHQPLVYVQIL*GLDEAEVDSGL
Trigger: AAGGCCACTGTCCACTTCCGCTTCATCAAGACCCCAGAGTATCTGCACATAGACCAGCGGTTGGTGTTCCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS CAA 72 bp ACCAGACGCCACTCAGGACCAATTAGATCATCAGCTTaGCTGCTCCCACCACCATGCCCAAGGCCAAGAGAG +
Preference number: 6 (lower is better)
Translates to: TRRHSGPIRSSA*LLPPPCPRPRE
Trigger: CTCTCTTGGCCTTGGGCATGGTGGTGGGAGCAGCAAAGCTGATGATCTAATTGGTCCTGAGTGGCGTCTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229583.2
CDS CAA 90 bp GTCCATTCGAGGCTGCCACCATGGCTGTCGGGTTTGTTCACTACATaGCCTTCGCTGTCAAAGCCCAGAATGTCATTGCCCACACTGCTG +
Preference number: 6 (lower is better)
Translates to: VHSRLPPWLSGLFTT*PSLSKPRMSLPTLL
Trigger: CAGCAGTGTGGGCAATGACATTCTGGGCTTTGACAGCGAAGGCAATGTAGTGAACAAACCCGACAGCCATGGTGGCAGCCTCGAATGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS TCA 72 bp GCGCACCTCCTTGACTGGCATACGTTTGCGATGGATTaGCTTGACAGCAATGGACAGGAAGTTCCCCAAGGG +
Preference number: 6 (lower is better)
Translates to: AHLLDWHTFAMD*LDSNGQEVPQG
Trigger: CCCTTGGGGAACTTCCTGTCCATTGCTGTCAAGTCAATCCATCGCAAACGTATGCCAGTCAAGGAGGTGCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS GCA 72 bp GGCTGCCACCATGGCTGTCGGGTTTGTTCACTACATTaGCTTCGCTGTCAAAGCCCAGAATGTCATTGCCCA +
Preference number: 6 (lower is better)
Translates to: GCHHGCRVCSLH*LRCQSPECHCP
Trigger: TGGGCAATGACATTCTGGGCTTTGACAGCGAAGGCAATGTAGTGAACAAACCCGACAGCCATGGTGGCAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS GCA 72 bp AGGCCTGGGGATTCAGGCGTGGGGAAACCATCACCATaGCTTTCCGGATGGATGAGCGCTTTATCTTCTTCA +
Preference number: 6 (lower is better)
Translates to: RPGDSGVGKPSP*LSGWMSALSSS
Trigger: TGAAGAAGATAAAGCGCTCATCCATCCGGAAAGGCATGGTGATGGTTTCCCCACGCCTGAATCCCCAGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
CDS CCA 72 bp ACCATGGCTTGGTATCGTGGACTAATTGTGGTGGGGTaGTGGAGGACAAGGATCTCAGCCTCAAACTCCCAG +
Preference number: 6 (lower is better)
Translates to: TMAWYRGLIVVG*WRTRISASNSQ
Trigger: CTGGGAGTTTGAGGCTGAGATCCTTGTCCTCCACCACCCCACCACAATTAGTCCACGATACCAAGCCATGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS CCA 72 bp ATGTGCAGATACTCTGGGGTCTTGATGAAGCGGAAGTaGACAGTGGCCTTGTCTCCTGTGCGCAGACAGTCT +
Preference number: 6 (lower is better)
Translates to: MCRYSGVLMKRK*TVALSPVRRQS
Trigger: AGACTGTCTGCGCACAGGAGACAAGGCCACTGTCCACTTCCGCTTCATCAAGACCCCAGAGTATCTGCACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS CCA 72 bp ACAGCCTTGGTTCGACCTTCCCGGAACACCAACCGCTaGTCTATGTGCAGATACTCTGGGGTCTTGATGAAG +
Preference number: 6 (lower is better)
Translates to: TALVRPSRNTNR*SMCRYSGVLMK
Trigger: CTTCATCAAGACCCCAGAGTATCTGCACATAGACCAGCGGTTGGTGTTCCGGGAAGGTCGAACCAAGGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS CAA 72 bp AGGCTGCCACCATGGCTGTCGGGTTTGTTCACTACATaGCCTTCGCTGTCAAAGCCCAGAATGTCATTGCCC +
Preference number: 6 (lower is better)
Translates to: RLPPWLSGLFTT*PSLSKPRMSLP
Trigger: GGGCAATGACATTCTGGGCTTTGACAGCGAAGGCAATGTAGTGAACAAACCCGACAGCCATGGTGGCAGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS CAA 72 bp TCTGGGGTCTTGATGAAGCGGAAGTGGACAGTGGCCTaGTCTCCTGTGCGCAGACAGTCTTTATCCATGCTC +
Preference number: 6 (lower is better)
Translates to: SGVLMKRKWTVA*SPVRRQSLSML
Trigger: GAGCATGGATAAAGACTGTCTGCGCACAGGAGACAAGGCCACTGTCCACTTCCGCTTCATCAAGACCCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS CAA 72 bp ACCAACCGCTGGTCTATGTGCAGATACTCTGGGGTCTaGATGAAGCGGAAGTGGACAGTGGCCTTGTCTCCT +
Preference number: 6 (lower is better)
Translates to: TNRWSMCRYSGV*MKRKWTVALSP
Trigger: AGGAGACAAGGCCACTGTCCACTTCCGCTTCATCAAGACCCCAGAGTATCTGCACATAGACCAGCGGTTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS CAA 72 bp TTTGTCCATTCGAGGCTGCCACCATGGCTGTCGGGTTaGTTCACTACATTGCCTTCGCTGACCTCCAGGAAG +
Preference number: 6 (lower is better)
Translates to: FVHSRLPPWLSG*FTTLPSLTSRK
Trigger: CTTCCTGGAGGTCAGCGAAGGCAATGTAGTGAACAAACCCGACAGCCATGGTGGCAGCCTCGAATGGACAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230262.2
CDS CAA 90 bp ACAAACACAGGTACATTGAGTGCCAATGCCAAGCCCAGATGCTCCTaGGTCATCCCCACAATGCCAGCATTGCTGCCCACCATGAGCATG +
Preference number: 6 (lower is better)
Translates to: TNTGTLSANAKPRCS*VIPTMPALLPTMSM
Trigger: CATGCTCATGGTGGGCAGCAATGCTGGCATTGTGGGGATGACCAAGGAGCATCTGGGCTTGGCATTGGCACTCAATGTACCTGTGTTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000231095.2
CDS TCA 72 bp GCGTGGGGAAACCATCACCATGCCTTTCCGGATGGATaGGCGCTTTATCTTCTTCAGTGCAAAGGAGGCTGT +
Preference number: 6 (lower is better)
Translates to: AWGNHHHAFPDG*ALYLLQCKGGC
Trigger: ACAGCCTCCTTTGCACTGAAGAAGATAAAGCGCTCATCCATCCGGAAAGGCATGGTGATGGTTTCCCCACGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
CDS GCA 72 bp AACACAGGTACATTGAGTGCCAATGCCAAGCCCAGATaGTCCTTGGTCATCCCCACAATGCCAGCATTGCTG +
Preference number: 6 (lower is better)
Translates to: NTGTLSANAKPR*SLVIPTMPALL
Trigger: CAGCAATGCTGGCATTGTGGGGATGACCAAGGAGCATCTGGGCTTGGCATTGGCACTCAATGTACCTGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000230262.2
ENSMUST00000231095.2
CDS CAA 72 bp CCCACACTGCTGGTTCGACCAGATTCAATCTCATGTTaGTGGCGAAAGAGTTTTTGGCGGGCAAAGCCACGG +
Preference number: 6 (lower is better)
Translates to: PTLLVRPDSISC*WRKSFWRAKPR
Trigger: CCGTGGCTTTGCCCGCCAAAAACTCTTTCGCCACAAACATGAGATTGAATCTGGTCGAACCAGCAGTGTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000229046.2
CDS CAA 72 bp TTTGTCCATTCGAGGCTGCCACCATGGCTGTCGGGTTaGTTCACTACATTGCCTTCGCTGTCAAAGCCCAGA +
Preference number: 6 (lower is better)
Translates to: FVHSRLPPWLSG*FTTLPSLSKPR
Trigger: TCTGGGCTTTGACAGCGAAGGCAATGTAGTGAACAAACCCGACAGCCATGGTGGCAGCCTCGAATGGACAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS CAA 72 bp TTAATCTGCTGGGGCTTGGAGTTCATGGGGGAGTTGTaGGTTGTCTGGAGGAGCTTGGTGATGGTGCCAACA +
Preference number: 6 (lower is better)
Translates to: LICWGLEFMGEL*VVWRSLVMVPT
Trigger: TGTTGGCACCATCACCAAGCTCCTCCAGACAACCAACAACTCCCCCATGAACTCCAAGCCCCAGCAGATTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000229583.2
CDS CAA 90 bp TTAGTTAAAACCAGACGCCACTCAGGACCAATTAGATCATCAGCTTaGCTGCTCCCACCACCATGCCCAAGGCCAAGAGAGGCCCTGCTT +
Preference number: 6 (lower is better)
Translates to: LVKTRRHSGPIRSSA*LLPPPCPRPREALL
Trigger: AAGCAGGGCCTCTCTTGGCCTTGGGCATGGTGGTGGGAGCAGCAAAGCTGATGATCTAATTGGTCCTGAGTGGCGTCTGGTTTTAACTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229583.2
CDS CAA 90 bp ATGTCATTGCCCACACTGCTGGTTCGACCAGATTCAATCTCATGTTaGTGGCGAAAGAGTTTTTGGCGGGCAAAGCCACGGCCATTGTCC +
Preference number: 6 (lower is better)
Translates to: MSLPTLLVRPDSISC*WRKSFWRAKPRPLS
Trigger: GGACAATGGCCGTGGCTTTGCCCGCCAAAAACTCTTTCGCCACAAACATGAGATTGAATCTGGTCGAACCAGCAGTGTGGGCAATGACAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000229046.2
CDS CAA 90 bp GCAGGACACATGTCAATCTTGGTGACAACCACAAACACAGGTACATaGAGTGCCAATGCCAAGCCCAGATGCTCCTTGGTCATCCCCACA +
Preference number: 6 (lower is better)
Translates to: AGHMSILVTTTNTGT*SANAKPRCSLVIPT
Trigger: TGTGGGGATGACCAAGGAGCATCTGGGCTTGGCATTGGCACTCAATGTACCTGTGTTTGTGGTTGTCACCAAGATTGACATGTGTCCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000231095.2
CDS CAA 90 bp TCCTGTGCGCAGACAGTCTTTATCCATGCTCAGAATTGTAGCTGTTaGCCGGATGCTCCCACAGTGTACCATGGCTTGGTATCGTGGACT +
Preference number: 6 (lower is better)
Translates to: SCAQTVFIHAQNCSC*PDAPTVYHGLVSWT
Trigger: AGTCCACGATACCAAGCCATGGTACACTGTGGGAGCATCCGGCAAACAGCTACAATTCTGAGCATGGATAAAGACTGTCTGCGCACAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS CAA 90 bp TCACAGATCTTTGTCCATTCGAGGCTGCCACCATGGCTGTCGGGTTaGTTCACTACATTGCCTTCGCTGACCTCCAGGAAGTCATTGTCT +
Preference number: 6 (lower is better)
Translates to: SQIFVHSRLPPWLSG*FTTLPSLTSRKSLS
Trigger: AGACAATGACTTCCTGGAGGTCAGCGAAGGCAATGTAGTGAACAAACCCGACAGCCATGGTGGCAGCCTCGAATGGACAAAGATCTGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230262.2
CDS GCA 72 bp GGTGACAACCACAAACACAGGTACATTGAGTGCCAATaGCAAGCCCAGATGCTCCTTGGTCATCCCCACAAT +
Preference number: 6 (lower is better)
Translates to: GDNHKHRYIECQ*QAQMLLGHPHN
Trigger: ATTGTGGGGATGACCAAGGAGCATCTGGGCTTGGCATTGGCACTCAATGTACCTGTGTTTGTGGTTGTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000231095.2
CDS CCA 72 bp ACACTGCTGGTTCGACCAGATTCAATCTCATGTTTGTaGCGAAAGAGTTTTTGGCGGGCAAAGCCACGGCCA +
Preference number: 6 (lower is better)
Translates to: TLLVRPDSISCL*RKSFWRAKPRP
Trigger: TGGCCGTGGCTTTGCCCGCCAAAAACTCTTTCGCCACAAACATGAGATTGAATCTGGTCGAACCAGCAGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000229046.2
CDS CCA 72 bp TTCTCACAGATCTTTGTCCATTCGAGGCTGCCACCATaGCTGTCGGGTTTGTTCACTACATTGCCTTCGCTG +
Preference number: 6 (lower is better)
Translates to: FSQIFVHSRLPP*LSGLFTTLPSL
Trigger: CAGCGAAGGCAATGTAGTGAACAAACCCGACAGCCATGGTGGCAGCCTCGAATGGACAAAGATCTGTGAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000230262.2
CDS CAA 90 bp TCACAGATCTTTGTCCATTCGAGGCTGCCACCATGGCTGTCGGGTTaGTTCACTACATTGCCTTCGCTGTCAAAGCCCAGAATGTCATTG +
Preference number: 6 (lower is better)
Translates to: SQIFVHSRLPPWLSG*FTTLPSLSKPRMSL
Trigger: CAATGACATTCTGGGCTTTGACAGCGAAGGCAATGTAGTGAACAAACCCGACAGCCATGGTGGCAGCCTCGAATGGACAAAGATCTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS CAA 90 bp TGCAGATACTCTGGGGTCTTGATGAAGCGGAAGTGGACAGTGGCCTaGTCTCCTGTGCGCAGACAGTCTTTATCCATGCTCAGAATTGTA +
Preference number: 6 (lower is better)
Translates to: CRYSGVLMKRKWTVA*SPVRRQSLSMLRIV
Trigger: TACAATTCTGAGCATGGATAAAGACTGTCTGCGCACAGGAGACAAGGCCACTGTCCACTTCCGCTTCATCAAGACCCCAGAGTATCTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS GCA 72 bp CTTCGCTGTCAAAGCCCAGAATGTCATTGCCCACACTaGTGGTTCGACCAGATTCAATCTCATGTTTGTGGC +
Preference number: 6 (lower is better)
Translates to: LRCQSPECHCPH*WFDQIQSHVCG
Trigger: GCCACAAACATGAGATTGAATCTGGTCGAACCAGCAGTGTGGGCAATGACATTCTGGGCTTTGACAGCGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000229046.2
CDS CCA 72 bp CGCTGTCAAAGCCCAGAATGTCATTGCCCACACTGCTaGTTCGACCAGATTCAATCTCATGTTTGTGGCGAA +
Preference number: 6 (lower is better)
Translates to: RCQSPECHCPHC*FDQIQSHVCGE
Trigger: TTCGCCACAAACATGAGATTGAATCTGGTCGAACCAGCAGTGTGGGCAATGACATTCTGGGCTTTGACAGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000229046.2
CDS GCA 72 bp CTACATTGCCTTCGCTGTCAAAGCCCAGAATGTCATTaGCCACACTGCTGGTTCGACCAGATTCAATCTCAT +
Preference number: 6 (lower is better)
Translates to: LHCLRCQSPECH*PHCWFDQIQSH
Trigger: ATGAGATTGAATCTGGTCGAACCAGCAGTGTGGGCAATGACATTCTGGGCTTTGACAGCGAAGGCAATGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000229046.2
CDS CAA 72 bp ATGTCAATCTTGGTGACAACCACAAACACAGGTACATaGAGTGCCAATGCCAAGCCCAGATGCTCCTTGGTC +
Preference number: 6 (lower is better)
Translates to: MSILVTTTNTGT*SANAKPRCSLV
Trigger: GACCAAGGAGCATCTGGGCTTGGCATTGGCACTCAATGTACCTGTGTTTGTGGTTGTCACCAAGATTGACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046463.10
ENSMUST00000231095.2
CDS CAA 72 bp CAGACAGTCTTTATCCATGCTCAGAATTGTAGCTGTTaGCCGGATGCTCCCACAGTGTACCATGGCTTGGTA +
Preference number: 6 (lower is better)
Translates to: QTVFIHAQNCSC*PDAPTVYHGLV
Trigger: TACCAAGCCATGGTACACTGTGGGAGCATCCGGCAAACAGCTACAATTCTGAGCATGGATAAAGACTGTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2
CDS CAA 90 bp GGTTTGTTCACTACATTGCCTTCGCTGTCAAAGCCCAGAATGTCATaGCCCACACTGCTGGTTCGACCAGATTCAATCTCATGTTTGTGG +
Preference number: 6 (lower is better)
Translates to: GLFTTLPSLSKPRMS*PTLLVRPDSISCLW
Trigger: CCACAAACATGAGATTGAATCTGGTCGAACCAGCAGTGTGGGCAATGACATTCTGGGCTTTGACAGCGAAGGCAATGTAGTGAACAAACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046463.10
CDS GCA 72 bp AGACAGTCTTTATCCATGCTCAGAATTGTAGCTGTTTaGCGGATGCTCCCACAGTGTACCATGGCTTGGTAT +
Preference number: 6 (lower is better)
Translates to: RQSLSMLRIVAV*RMLPQCTMAWY
Trigger: ATACCAAGCCATGGTACACTGTGGGAGCATCCGGCAAACAGCTACAATTCTGAGCATGGATAAAGACTGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046463.10
ENSMUST00000228991.2
ENSMUST00000229583.2