Pregenerated sensors for GTF3C6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019837Ensembl transcript IDs: ENSMUST00000019982.9, ENSMUST00000213628.2, ENSMUST00000217537.2
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCTCTTAGGAAGGACAGGACTGCAATCCCAGCACCACATGGCTCATaGCCATCTCTATCTCCAGTTCTAAGAGGCCCAAAGTCTCTTCAG | + |
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Preference number: 1 (lower is better) Translates to: ALRKDRTAIPAPHGS*PSLSPVLRGPKSLQ Trigger: CTGAAGAGACTTTGGGCCTCTTAGAACTGGAGATAGAGATGGCCATGAGCCATGTGGTGCTGGGATTGCAGTCCTGTCCTTCCTAAGAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR TCA 90 bp | CTGGGGCTCACAGAGGCCAGAAGCAGGCATCAGATCTCTGGAAACTaGAGTCTCAGATGGCTCCAAACTGCCACGTATACACTAGAAATC | + |
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Preference number: 1 (lower is better) Translates to: LGLTEARSRHQISGN*SLRWLQTATYTLEI Trigger: GATTTCTAGTGTATACGTGGCAGTTTGGAGCCATCTGAGACTTCAGTTTCCAGAGATCTGATGCCTGCTTCTGGCCTCTGTGAGCCCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR GCA 90 bp | GGTCTGTGCATTTGTGTGCTCTGTTTTGGGGTGAGGATCTTGAAATaGAGCCAGTGCTGGCATAGAGCTGTTGACCGTGCTGGTGTAGAA | + |
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Preference number: 1 (lower is better) Translates to: GLCICVLCFGVRILK*SQCWHRAVDRAGVE Trigger: TTCTACACCAGCACGGTCAACAGCTCTATGCCAGCACTGGCTGCATTTCAAGATCCTCACCCCAAAACAGAGCACACAAATGCACAGACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR TCA 90 bp | CTTGGCTCTCTTGAAACTCATTTTGTAGACTGGCTGCCCTTGAACTaGGAAATGTGCCTGCTTCTGCTTCCGGAGTGCTGGGATCAAAGG | + |
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Preference number: 1 (lower is better) Translates to: LGSLETHFVDWLPLN*EMCLLLLPECWDQR Trigger: CCTTTGATCCCAGCACTCCGGAAGCAGAAGCAGGCACATTTCTCAGTTCAAGGGCAGCCAGTCTACAAAATGAGTTTCAAGAGAGCCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR TCA 90 bp | TCACTTTCTCTGGCCTGTAACTTGCTATATAGATCACCGGGATCTTaGATTCTGTGTTGTTTCTGCCACTTGAGTGACAAAAATTACAGT | + |
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Preference number: 1 (lower is better) Translates to: SLSLACNLLYRSPGS*ILCCFCHLSDKNYS Trigger: ACTGTAATTTTTGTCACTCAAGTGGCAGAAACAACACAGAATTCAAGATCCCGGTGATCTATATAGCAAGTTACAGGCCAGAGAAAGTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR-3UTR TCA 90 bp | AGTTCTAAGAGGCCCAAAGTCTCTTCAGACCTCCTTGAAACTCTTGGCTCTCTTGTGTGGAGAGGGCTGTaGGGCGGCCCAACAGGTAAA | + |
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Preference number: 2 (lower is better) Translates to: SSKRPKVSSDLLETLGSLVWRGL*GGPTGK Trigger: TTTACCTGTTGGGCCGCCTCACAGCCCTCTCCACAC...AAGAGAGCCAAGAGTTTCAAGGAGGTCTGAAGAGACTTTGGGCCTCTTAGAACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR-3UTR CCA 90 bp | TGTGGAGAGGGCTGTGAGGCGGCCCAACAGGTAAAGTGTTCGCTGCACAAGGCTCGAATCCAGGTCCTCTaGAAGAGCATTTTAACTATG | + |
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Preference number: 2 (lower is better) Translates to: CGEGCEAAQQVKCSLHKARIQVL*KSILTM Trigger: CATAGTTAAAATGCTCTTCCAGAGGACCTGGATTCG...AGCCTTGTGCAGCGAACACTTTACCTGTTGGGCCGCCTCACAGCCCTCTCCACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR-3UTR TCA 90 bp | GGCAAGTTAGGAAGGTGGCTTCTAAATAGCTTTAAAGGCCTGGCTGGAGCTACCTGGCTGCCCTTGAACTaGGAAATGTGCCTGCTTCTG | + |
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Preference number: 2 (lower is better) Translates to: GKLGRWLLNSFKGLAGATWLPLN*EMCLLL Trigger: CAGAAGCAGGCACATTTCTCAGTTCAAGGGCAGCCA...GGTAGCTCCAGCCAGGCCTTTAAAGCTATTTAGAAGCCACCTTCCTAACTTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR-3UTR GCA 90 bp | GGCAAGTTAGGAAGGTGGCTTCTAAATAGCTTTAAAGGCCTGGCTGGAGCTACCAAACACAAGAACACTTaGTGCGGTCAGAAGGCTAGA | + |
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Preference number: 2 (lower is better) Translates to: GKLGRWLLNSFKGLAGATKHKNT*CGQKAR Trigger: TCTAGCCTTCTGACCGCAGCAAGTGTTCTTGTGTTT...GGTAGCTCCAGCCAGGCCTTTAAAGCTATTTAGAAGCCACCTTCCTAACTTGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR-3UTR CCA 90 bp | CCATTGCAAGGTCTGTGCATTTGTGTGCTCTGTTTTGGGGTGAGGATCTTGAAACAGGCATCAGATCTCTaGAAACTGAAGTCTCAGATG | + |
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Preference number: 2 (lower is better) Translates to: PLQGLCICVLCFGVRILKQASDL*KLKSQM Trigger: CATCTGAGACTTCAGTTTCCAGAGATCTGATGCCTG...TTTCAAGATCCTCACCCCAAAACAGAGCACACAAATGCACAGACCTTGCAATGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR-3UTR CCA 90 bp | ACAAGTGACCTAATTTACCATTGCAAGGTCTGTGCATTTGTGTGCTCTGTTTTGCTAGAGATGGCACGATaGTATGGGGCTGTGGATCTG | + |
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Preference number: 2 (lower is better) Translates to: TSDLIYHCKVCAFVCSVLLEMAR*YGAVDL Trigger: CAGATCCACAGCCCCATACCATCGTGCCATCTCTAG...CAAAACAGAGCACACAAATGCACAGACCTTGCAATGGTAAATTAGGTCACTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR-3UTR CCA 90 bp | TTATTGCATTCTTCACAGGATGACTTTAAAACACAAGAACACTTGCTGCGGTCAGCACCACATGGCTCATaGCCATCTCTATCTCCAGTT | + |
|
Preference number: 2 (lower is better) Translates to: LLHSSQDDFKTQEHLLRSAPHGS*PSLSPV Trigger: AACTGGAGATAGAGATGGCCATGAGCCATGTGGTGC...TGACCGCAGCAAGTGTTCTTGTGTTTTAAAGTCATCCTGTGAAGAATGCAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR-3UTR CCA 90 bp | ACAAGTGACCTAATTTACCATTGCAAGGTCTGTGCATTTGTGTGCTCTGTTTTGTGCTGCCTTTCCCTATaGACCACTGGAACTAAATGC | + |
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Preference number: 2 (lower is better) Translates to: TSDLIYHCKVCAFVCSVLCCLSL*TTGTKC Trigger: GCATTTAGTTCCAGTGGTCCATAGGGAAAGGCAGCA...CAAAACAGAGCACACAAATGCACAGACCTTGCAATGGTAAATTAGGTCACTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR CAA 90 bp | ACCAAGATTAAAGGCATGTCCTGCCATTCCAGGAAATCCATCTTTTaGCATATTGGGATGGATAATGGCAAGTTAGGAAGGTGGCTTCTA | + |
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Preference number: 2 (lower is better) Translates to: TKIKGMSCHSRKSIF*HIGMDNGKLGRWLL Trigger: TAGAAGCCACCTTCCTAACTTGCCATTATCCATCCCAATATGCAAAAAGATGGATTTCCTGGAATGGCAGGACATGCCTTTAATCTTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR-3UTR GCA 90 bp | GAAGAGCATTTTAACTATGATGCTCTCTCTCATGTTCTAAAAGCTGAATTCCTGCAGCTAAGCAGTAATTaGATACAAGACCACTTCTTT | + |
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Preference number: 2 (lower is better) Translates to: EEHFNYDALSHVLKAEFLQLSSN*IQDHFF Trigger: AAAGAAGTGGTCTTGTATGCAATTACTGCTTAGCTG...CAGGAATTCAGCTTTTAGAACATGAGAGAGAGCATCATAGTTAAAATGCTCTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| 3UTR CCA 72 bp | GGGGCTCACAGAGGCCAGAAGCAGGCATCAGATCTCTaGAAACTGAAGTCTCAGATGGCTCCAAACTGCCAC | + |
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Preference number: 3 (lower is better) Translates to: GAHRGQKQASDL*KLKSQMAPNCH Trigger: GTGGCAGTTTGGAGCCATCTGAGACTTCAGTTTCCAGAGATCTGATGCCTGCTTCTGGCCTCTGTGAGCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR CCA 72 bp | AAGGACAGGACTGCAATCCCAGCACCACATGGCTCATaGCCATCTCTATCTCCAGTTCTAAGAGGCCCAAAG | + |
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Preference number: 3 (lower is better) Translates to: KDRTAIPAPHGS*PSLSPVLRGPK Trigger: CTTTGGGCCTCTTAGAACTGGAGATAGAGATGGCCATGAGCCATGTGGTGCTGGGATTGCAGTCCTGTCCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR GCA 72 bp | TGCTTCTGCTTCCGGAGTGCTGGGATCAAAGGTGTGTaGCACCAACTGCCCCACATAAGTATTTTTAGGAGG | + |
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Preference number: 3 (lower is better) Translates to: CFCFRSAGIKGV*HQLPHISIFRR Trigger: CCTCCTAAAAATACTTATGTGGGGCAGTTGGTGGCACACACCTTTGATCCCAGCACTCCGGAAGCAGAAGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR GCA 72 bp | CTCTGTTTTGGGGTGAGGATCTTGAAATGCAGCCAGTaGTGGCATAGAGCTGTTGACCGTGCTGGTGTAGAA | + |
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Preference number: 3 (lower is better) Translates to: LCFGVRILKCSQ*WHRAVDRAGVE Trigger: TTCTACACCAGCACGGTCAACAGCTCTATGCCAGCACTGGCTGCATTTCAAGATCCTCACCCCAAAACAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR CCA 72 bp | TGTTTTGGGGTGAGGATCTTGAAATGCAGCCAGTGCTaGCATAGAGCTGTTGACCGTGCTGGTGTAGAACCT | + |
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Preference number: 3 (lower is better) Translates to: CFGVRILKCSQC*HRAVDRAGVEP Trigger: AGGTTCTACACCAGCACGGTCAACAGCTCTATGCCAGCACTGGCTGCATTTCAAGATCCTCACCCCAAAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR TCA 72 bp | ACAGAGGCCAGAAGCAGGCATCAGATCTCTGGAAACTaGAGTCTCAGATGGCTCCAAACTGCCACGTATACA | + |
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Preference number: 3 (lower is better) Translates to: TEARSRHQISGN*SLRWLQTATYT Trigger: TGTATACGTGGCAGTTTGGAGCCATCTGAGACTTCAGTTTCCAGAGATCTGATGCCTGCTTCTGGCCTCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR TCA 72 bp | CTTGAAACTCATTTTGTAGACTGGCTGCCCTTGAACTaGGAAATGTGCCTGCTTCTGCTTCCGGAGTGCTGG | + |
|
Preference number: 3 (lower is better) Translates to: LETHFVDWLPLN*EMCLLLLPECW Trigger: CCAGCACTCCGGAAGCAGAAGCAGGCACATTTCTCAGTTCAAGGGCAGCCAGTCTACAAAATGAGTTTCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR CCA 72 bp | TTATTACTTCAAAGAGCTCACATACCCATCCACGAGTaGCACGGTGTTGCCTGGAATTGCCTAGTCTGCTGT | + |
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Preference number: 3 (lower is better) Translates to: LLLQRAHIPIHE*HGVAWNCLVCC Trigger: ACAGCAGACTAGGCAATTCCAGGCAACACCGTGCCACTCGTGGATGGGTATGTGAGCTCTTTGAAGTAATAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR CCA 72 bp | TACTTGAGATTAGCATGTAGACTAGAGATGGCACGATaGTATGGGGCTGTGGATCTGACACTAAGTCCAGGT | + |
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Preference number: 3 (lower is better) Translates to: YLRLACRLEMAR*YGAVDLTLSPG Trigger: ACCTGGACTTAGTGTCAGATCCACAGCCCCATACCATCGTGCCATCTCTAGTCTACATGCTAATCTCAAGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR CCA 72 bp | TGTGCTAGCAAGCAATTGAAGGTGAGAAAAGCATTGTaGGAACATTCAGTTTGTAGGCAAGTCAGAGGCGGT | + |
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Preference number: 3 (lower is better) Translates to: CASKQLKVRKAL*EHSVCRQVRGG Trigger: ACCGCCTCTGACTTGCCTACAAACTGAATGTTCCCACAATGCTTTTCTCACCTTCAATTGCTTGCTAGCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR TCA 72 bp | CTGGCCTGTAACTTGCTATATAGATCACCGGGATCTTaGATTCTGTGTTGTTTCTGCCACTTGAGTGACAAA | + |
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Preference number: 3 (lower is better) Translates to: LACNLLYRSPGS*ILCCFCHLSDK Trigger: TTTGTCACTCAAGTGGCAGAAACAACACAGAATTCAAGATCCCGGTGATCTATATAGCAAGTTACAGGCCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR GCA 72 bp | CTTCACAGGATGACTTTAAAACACAAGAACACTTGCTaGGGTCAGAAGGCTAGAGAATTTAAGGCTAGTCTG | + |
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Preference number: 3 (lower is better) Translates to: LHRMTLKHKNTC*GQKAREFKASL Trigger: CAGACTAGCCTTAAATTCTCTAGCCTTCTGACCGCAGCAAGTGTTCTTGTGTTTTAAAGTCATCCTGTGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR CCA 72 bp | TGCCACGTATACACTAGAAATCGAATCCAGGTCCTCTaGAAGAGCATTTTAACTATGATGCTCTCTCTCATG | + |
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Preference number: 3 (lower is better) Translates to: CHVYTRNRIQVL*KSILTMMLSLM Trigger: CATGAGAGAGAGCATCATAGTTAAAATGCTCTTCCAGAGGACCTGGATTCGATTTCTAGTGTATACGTGGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR TCA 72 bp | GGGATCTTGAATTCTGTGTTGTTTCTGCCACTTGAGTaGCAAAAATTACAGTCATTTGCCACCACAAGTGAC | + |
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Preference number: 3 (lower is better) Translates to: GILNSVLFLPLE*QKLQSFATTSD Trigger: GTCACTTGTGGTGGCAAATGACTGTAATTTTTGTCACTCAAGTGGCAGAAACAACACAGAATTCAAGATCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR-3UTR CAA 90 bp | ACAAGTGACCTAATTTACCATTGCAAGGTCTGTGCATTTGTGTGCTCTGTTTTGACCTCCTTGAAACTCTaGGCTCTCTTGAAACTCATT | + |
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Preference number: 3 (lower is better) Translates to: TSDLIYHCKVCAFVCSVLTSLKL*ALLKLI Trigger: AATGAGTTTCAAGAGAGCCAAGAGTTTCAAGGAGGT...CAAAACAGAGCACACAAATGCACAGACCTTGCAATGGTAAATTAGGTCACTTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR GCA 72 bp | ATTCTTCACAGGATGACTTTAAAACACAAGAACACTTaGTGCGGTCAGAAGGCTAGAGAATTTAAGGCTAGT | + |
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Preference number: 3 (lower is better) Translates to: ILHRMTLKHKNT*CGQKAREFKAS Trigger: ACTAGCCTTAAATTCTCTAGCCTTCTGACCGCAGCAAGTGTTCTTGTGTTTTAAAGTCATCCTGTGAAGAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| CDS-3UTR GCA 90 bp | TGTGGAGAGGGCTGTGAGGCGGCCCAACAGGTAAAGTGTTCGCTGCACAAGGCTATCAGAGGCCGGCCCTaGAGCCTCATCTTCATGTTC | + |
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Preference number: 4 (lower is better) Translates to: CGEGCEAAQQVKCSLHKAIRGRP*SLIFMF Trigger: GAACATGAAGATGAGGCTGCAGGGCCGGCCTCTGAT...AGCCTTGTGCAGCGAACACTTTACCTGTTGGGCCGCCTCACAGCCCTCTCCACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| CDS-3UTR TCA 90 bp | GTCCTACGTGACTCTGGTATACTAAGTCCTGACGTACCTGGAAACGCATACTGTAGAAGGGGTCTCCCCTaGAGGAGCAGGGTCCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: VLRDSGILSPDVPGNAYCRRGLP*RSRVLH Trigger: GTGGAGGACCCTGCTCCTTCAGGGGAGACCCCTTCT...ACAGTATGCGTTTCCAGGTACGTCAGGACTTAGTATACCAGAGTCACGTAGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| CDS-3UTR TCA 90 bp | AAGCTGAATTCCTGTGTGGTCCTACGTGACTCTGGTATACTAAGTCCTGACGTAAGAAGGGGTCTCCCCTaGAGGAGCAGGGTCCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: KLNSCVVLRDSGILSPDVRRGLP*RSRVLH Trigger: GTGGAGGACCCTGCTCCTTCAGGGGAGACCCCTTCT...TACGTCAGGACTTAGTATACCAGAGTCACGTAGGACCACACAGGAATTCAGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| CDS-3UTR GCA 90 bp | GTCCTACGTGACTCTGGTATACTAAGTCCTGACGTACCTGGAAACGCATACTGTTGCTCCACCTTCTCCTaGTCCTGTGTCTGCTCCGCA | + |
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Preference number: 4 (lower is better) Translates to: VLRDSGILSPDVPGNAYCCSTFS*SCVCSA Trigger: TGCGGAGCAGACACAGGAGCAGGAGAAGGTGGAGCA...ACAGTATGCGTTTCCAGGTACGTCAGGACTTAGTATACCAGAGTCACGTAGGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| 3UTR CAA 72 bp | CTGTGCATTTGTGTGCTCTGTTTTGGGGTGAGGATCTaGAAATGCAGCCAGTGCTGGCATAGAGCTGTTGAC | + |
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Preference number: 4 (lower is better) Translates to: LCICVLCFGVRI*KCSQCWHRAVD Trigger: GTCAACAGCTCTATGCCAGCACTGGCTGCATTTCAAGATCCTCACCCCAAAACAGAGCACACAAATGCACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| CDS-3UTR GCA 90 bp | GGCAAGTTAGGAAGGTGGCTTCTAAATAGCTTTAAAGGCCTGGCTGGAGCTACCGAAGCGTCCTTGTCATaGTCAGCTTCTTCATCGTGT | + |
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Preference number: 4 (lower is better) Translates to: GKLGRWLLNSFKGLAGATEASLS*SASSSC Trigger: ACACGATGAAGAAGCTGAGCATGACAAGGACGCTTC...GGTAGCTCCAGCCAGGCCTTTAAAGCTATTTAGAAGCCACCTTCCTAACTTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| CDS-3UTR GCA 90 bp | AACTATGATGCTCTCTCTCATGTTCTAAAAGCTGAATTCCTGTGTGGTCCTACGTGCTCCACCTTCTCCTaGTCCTGTGTCTGCTCCGCA | + |
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Preference number: 4 (lower is better) Translates to: NYDALSHVLKAEFLCGPTCSTFS*SCVCSA Trigger: TGCGGAGCAGACACAGGAGCAGGAGAAGGTGGAGCA...CGTAGGACCACACAGGAATTCAGCTTTTAGAACATGAGAGAGAGCATCATAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| CDS-3UTR GCA 90 bp | AACTATGATGCTCTCTCTCATGTTCTAAAAGCTGAATTCCTGTGTGGTCCTACGATCAGAGGCCGGCCCTaGAGCCTCATCTTCATGTTC | + |
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Preference number: 4 (lower is better) Translates to: NYDALSHVLKAEFLCGPTIRGRP*SLIFMF Trigger: GAACATGAAGATGAGGCTGCAGGGCCGGCCTCTGAT...CGTAGGACCACACAGGAATTCAGCTTTTAGAACATGAGAGAGAGCATCATAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| CDS-3UTR TCA 90 bp | AACTATGATGCTCTCTCTCATGTTCTAAAAGCTGAATTCCTGTGTGGTCCTACGGCACTGCCTTTCATCTaGCTCTCTTGGTCTTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: NYDALSHVLKAEFLCGPTALPFI*LSWSSS Trigger: GCTGGAAGACCAAGAGAGTCAGATGAAAGGCAGTGC...CGTAGGACCACACAGGAATTCAGCTTTTAGAACATGAGAGAGAGCATCATAGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| CDS-3UTR CCA 90 bp | CCATTGCAAGGTCTGTGCATTTGTGTGCTCTGTTTTGGGGTGAGGATCTTGAAAAGCTTCTTCATCGTGTaGCACTTGTACTTCAGCACC | + |
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Preference number: 4 (lower is better) Translates to: PLQGLCICVLCFGVRILKSFFIV*HLYFST Trigger: GGTGCTGAAGTACAAGTGCCACACGATGAAGAAGCT...TTTCAAGATCCTCACCCCAAAACAGAGCACACAAATGCACAGACCTTGCAATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| 3UTR CAA 72 bp | ATGGTATGGGGCTGTGGATCTGACACTAAGTCCAGGTaGACTAAGGATCAGAACTTCAGAACTGGATTAGGT | + |
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Preference number: 4 (lower is better) Translates to: MVWGCGSDTKSR*TKDQNFRTGLG Trigger: ACCTAATCCAGTTCTGAAGTTCTGATCCTTAGTCAACCTGGACTTAGTGTCAGATCCACAGCCCCATACCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| CDS-3UTR GCA 90 bp | GAAGAGCATTTTAACTATGATGCTCTCTCTCATGTTCTAAAAGCTGAATTCCTGTCCTGCTCCTGTGTCTaGTCCGCACTGCCTTTCATC | + |
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Preference number: 4 (lower is better) Translates to: EEHFNYDALSHVLKAEFLSCSCV*SALPFI Trigger: GATGAAAGGCAGTGCGGAGCAGACACAGGAGCAGGA...CAGGAATTCAGCTTTTAGAACATGAGAGAGAGCATCATAGTTAAAATGCTCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| CDS-3UTR GCA 90 bp | AACTATGATGCTCTCTCTCATGTTCTAAAAGCTGAATTCCTGTGTGGTCCTACGTCTACCAGAACAAACTaGTCCTCCTCTAGCTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: NYDALSHVLKAEFLCGPTSTRTN*SSSSSS Trigger: AGAGGAGCTAGAGGAGGAGCAGTTTGTTCTGGTAGA...CGTAGGACCACACAGGAATTCAGCTTTTAGAACATGAGAGAGAGCATCATAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| CDS-3UTR CCA 90 bp | CCAGTTCTAAGAGGCCCAAAGTCTCTTCAGACCTCCTTGAAACTCTTGGCTCTCTCATCTTCATGTTCATaGAGAAAGCTGCAAATCATG | + |
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Preference number: 4 (lower is better) Translates to: PVLRGPKSLQTSLKLLALSSSCS*RKLQIM Trigger: CATGATTTGCAGCTTTCTCCATGAACATGAAGATGA...GAGAGCCAAGAGTTTCAAGGAGGTCTGAAGAGACTTTGGGCCTCTTAGAACTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| CDS-3UTR TCA 90 bp | GAAGAGCATTTTAACTATGATGCTCTCTCTCATGTTCTAAAAGCTGAATTCCTGGCACTGCCTTTCATCTaGCTCTCTTGGTCTTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: EEHFNYDALSHVLKAEFLALPFI*LSWSSS Trigger: GCTGGAAGACCAAGAGAGTCAGATGAAAGGCAGTGC...CAGGAATTCAGCTTTTAGAACATGAGAGAGAGCATCATAGTTAAAATGCTCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| 3UTR CAA 72 bp | AAAGGCATGTCCTGCCATTCCAGGAAATCCATCTTTTaGCATATTGGGATGGATAATGGCAAGTTAGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: KGMSCHSRKSIF*HIGMDNGKLGR Trigger: CCTTCCTAACTTGCCATTATCCATCCCAATATGCAAAAAGATGGATTTCCTGGAATGGCAGGACATGCCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| CDS-3UTR GCA 90 bp | GAAGAGCATTTTAACTATGATGCTCTCTCTCATGTTCTAAAAGCTGAATTCCTGGAAGCGTCCTTGTCATaGTCAGCTTCTTCATCGTGT | + |
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Preference number: 4 (lower is better) Translates to: EEHFNYDALSHVLKAEFLEASLS*SASSSC Trigger: ACACGATGAAGAAGCTGAGCATGACAAGGACGCTTC...CAGGAATTCAGCTTTTAGAACATGAGAGAGAGCATCATAGTTAAAATGCTCTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| CDS-3UTR CCA 90 bp | GAAGAGCATTTTAACTATGATGCTCTCTCTCATGTTCTAAAAGCTGAATTCCTGAGCTTCTTCATCGTGTaGCACTTGTACTTCAGCACC | + |
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Preference number: 4 (lower is better) Translates to: EEHFNYDALSHVLKAEFLSFFIV*HLYFST Trigger: GGTGCTGAAGTACAAGTGCCACACGATGAAGAAGCT...CAGGAATTCAGCTTTTAGAACATGAGAGAGAGCATCATAGTTAAAATGCTCTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| CDS-3UTR CCA 90 bp | GAAGAGCATTTTAACTATGATGCTCTCTCTCATGTTCTAAAAGCTGAATTCCTGTCATCTTCATGTTCATaGAGAAAGCTGCAAATCATG | + |
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Preference number: 4 (lower is better) Translates to: EEHFNYDALSHVLKAEFLSSSCS*RKLQIM Trigger: CATGATTTGCAGCTTTCTCCATGAACATGAAGATGA...CAGGAATTCAGCTTTTAGAACATGAGAGAGAGCATCATAGTTAAAATGCTCTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| CDS GCA 90 bp | CTTCCGAGTGCTCCACCTTCTCCTGCTCCTGTGTCTGCTCCGCACTaGCTTTCATCTGACTCTCTTGGTCTTCCAGCTCCACAGGTTTAT | + |
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Preference number: 5 (lower is better) Translates to: LPSAPPSPAPVSAPH*LSSDSLGLPAPQVY Trigger: ATAAACCTGTGGAGCTGGAAGACCAAGAGAGTCAGATGAAAGGCAGTGCGGAGCAGACACAGGAGCAGGAGAAGGTGGAGCACTCGGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| CDS-3UTR CAA 90 bp | CCAGTTCTAAGAGGCCCAAAGTCTCTTCAGACCTCCTTGAAACTCTTGGCTCTCCTGTCAGAAGCGTCCTaGTCATGCTCAGCTTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: PVLRGPKSLQTSLKLLALLSEAS*SCSASS Trigger: TGAAGAAGCTGAGCATGACAAGGACGCTTCTGACAG...GAGAGCCAAGAGTTTCAAGGAGGTCTGAAGAGACTTTGGGCCTCTTAGAACTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| CDS-3UTR CAA 90 bp | GTCCTACGTGACTCTGGTATACTAAGTCCTGACGTACCTGGAAACGCATACTGTCTGTCAGAAGCGTCCTaGTCATGCTCAGCTTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: VLRDSGILSPDVPGNAYCLSEAS*SCSASS Trigger: TGAAGAAGCTGAGCATGACAAGGACGCTTCTGACAG...ACAGTATGCGTTTCCAGGTACGTCAGGACTTAGTATACCAGAGTCACGTAGGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| CDS-3UTR CAA 90 bp | AAGCTGAATTCCTGTGTGGTCCTACGTGACTCTGGTATACTAAGTCCTGACGTATTTCATCTGACTCTCTaGGTCTTCCAGCTCCACAGG | + |
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Preference number: 5 (lower is better) Translates to: KLNSCVVLRDSGILSPDVFHLTL*VFQLHR Trigger: CCTGTGGAGCTGGAAGACCAAGAGAGTCAGATGAAA...TACGTCAGGACTTAGTATACCAGAGTCACGTAGGACCACACAGGAATTCAGCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| CDS-3UTR CAA 90 bp | AAGCTGAATTCCTGTGTGGTCCTACGTGACTCTGGTATACTAAGTCCTGACGTAATCATTATCCTTCATTaGCAGCCACTCTACGCCATC | + |
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Preference number: 5 (lower is better) Translates to: KLNSCVVLRDSGILSPDVIIILH*QPLYAI Trigger: GATGGCGTAGAGTGGCTGCAAATGAAGGATAATGAT...TACGTCAGGACTTAGTATACCAGAGTCACGTAGGACCACACAGGAATTCAGCTT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| CDS-3UTR CAA 90 bp | CACGGGATGGTGAGCCACACACAGCTAAGCAGTAATTGCATACAAGACCACTTCAGAAACATTTCCATCTaGAGTTCCCATGAAAACAGA | + |
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Preference number: 5 (lower is better) Translates to: HGMVSHTQLSSNCIQDHFRNISI*SSHENR Trigger: TCTGTTTTCATGGGAACTCAAGATGGAAATGTTTCT...GAAGTGGTCTTGTATGCAATTACTGCTTAGCTGTGTGTGGCTCACCATCCCGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| CDS-3UTR CAA 90 bp | AGTTCTAAGAGGCCCAAAGTCTCTTCAGACCTCCTTGAAACTCTTGGCTCTCTTTCACGACTGGTTGTTTaGAGAAACATTTCCATCTTG | + |
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Preference number: 5 (lower is better) Translates to: SSKRPKVSSDLLETLGSLSRLVV*RNISIL Trigger: CAAGATGGAAATGTTTCTCAAAACAACCAGTCGTGA...AAGAGAGCCAAGAGTTTCAAGGAGGTCTGAAGAGACTTTGGGCCTCTTAGAACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| CDS-3UTR CAA 90 bp | GAAGAGCATTTTAACTATGATGCTCTCTCTCATGTTCTAAAAGCTGAATTCCTGATCATTATCCTTCATTaGCAGCCACTCTACGCCATC | + |
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Preference number: 5 (lower is better) Translates to: EEHFNYDALSHVLKAEFLIIILH*QPLYAI Trigger: GATGGCGTAGAGTGGCTGCAAATGAAGGATAATGAT...CAGGAATTCAGCTTTTAGAACATGAGAGAGAGCATCATAGTTAAAATGCTCTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| CDS-3UTR CAA 90 bp | ACAAGTGACCTAATTTACCATTGCAAGGTCTGTGCATTTGTGTGCTCTGTTTTGAGAAACATTTCCATCTaGAGTTCCCATGAAAACAGA | + |
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Preference number: 5 (lower is better) Translates to: TSDLIYHCKVCAFVCSVLRNISI*SSHENR Trigger: TCTGTTTTCATGGGAACTCAAGATGGAAATGTTTCT...CAAAACAGAGCACACAAATGCACAGACCTTGCAATGGTAAATTAGGTCACTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217537.2 |
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| CDS-3UTR CAA 90 bp | GAAGAGCATTTTAACTATGATGCTCTCTCTCATGTTCTAAAAGCTGAATTCCTGTCACGACTGGTTGTTTaGAGAAACATTTCCATCTTG | + |
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Preference number: 5 (lower is better) Translates to: EEHFNYDALSHVLKAEFLSRLVV*RNISIL Trigger: CAAGATGGAAATGTTTCTCAAAACAACCAGTCGTGA...CAGGAATTCAGCTTTTAGAACATGAGAGAGAGCATCATAGTTAAAATGCTCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| CDS GCA 72 bp | GTCTCCCCTGAAGGAGCAGGGTCCTCCACTTCCGAGTaGTCCACCTTCTCCTGCTCCTGTGTCTGCTCCGCA | + |
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Preference number: 6 (lower is better) Translates to: VSPEGAGSSTSE*STFSCSCVCSA Trigger: TGCGGAGCAGACACAGGAGCAGGAGAAGGTGGAGCACTCGGAAGTGGAGGACCCTGCTCCTTCAGGGGAGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019982.9 ENSMUST00000217537.2 |
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| CDS CAA 72 bp | CTGTGTCTGCTCCGCACTGCCTTTCATCTGACTCTCTaGGTCTTCCAGCTCCACAGGTTTATCAGAGGCCGG | + |
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Preference number: 6 (lower is better) Translates to: LCLLRTAFHLTL*VFQLHRFIRGR Trigger: CCGGCCTCTGATAAACCTGTGGAGCTGGAAGACCAAGAGAGTCAGATGAAAGGCAGTGCGGAGCAGACACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019982.9 ENSMUST00000213628.2 ENSMUST00000217537.2 |
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| CDS GCA 72 bp | GTCTTCCAGCTCCACAGGTTTATCAGAGGCCGGCCCTaGAGCCTCATCTTCATGTTCATGGAGAAAGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: VFQLHRFIRGRP*SLIFMFMEKAA Trigger: TGCAGCTTTCTCCATGAACATGAAGATGAGGCTGCAGGGCCGGCCTCTGATAAACCTGTGGAGCTGGAAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019982.9 ENSMUST00000213628.2 ENSMUST00000217537.2 |
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| CDS TCA 72 bp | TCCTGCTCCTGTGTCTGCTCCGCACTGCCTTTCATCTaGCTCTCTTGGTCTTCCAGCTCCACAGGTTTATCA | + |
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Preference number: 6 (lower is better) Translates to: SCSCVCSALPFI*LSWSSSSTGLS Trigger: TGATAAACCTGTGGAGCTGGAAGACCAAGAGAGTCAGATGAAAGGCAGTGCGGAGCAGACACAGGAGCAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019982.9 ENSMUST00000213628.2 ENSMUST00000217537.2 |
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