Pregenerated sensors for GTF2H2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021639Ensembl transcript IDs: ENSMUST00000145266.8, ENSMUST00000232450.2
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | CCTGAATTGGCTTGTTGGGGTTTTTCAGTGACCATATaGGAGGGCCAAGTTCATGTTCCCATTGCCATCTCC | + |
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Preference number: 3 (lower is better) Translates to: PELACWGFSVTI*EGQVHVPIAIS Trigger: GGAGATGGCAATGGGAACATGAACTTGGCCCTCCCATATGGTCACTGAAAAACCCCAACAAGCCAATTCAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000145266.8 ENSMUST00000232450.2 |
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| CDS-3UTR CCA 90 bp | TTTTCAGTGACCATATGGGAGGGCCAAGTTCATGTTCCCATTGCCATCTCCATCCTTTGCTCGGCACTGTaGGCAGAAGTAGCCTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: FSVTIWEGQVHVPIAISILCSAL*AEVASQ Trigger: CTGGGAGGCTACTTCTGCCCACAGTGCCGAGCAAAG...GATGGAGATGGCAATGGGAACATGAACTTGGCCCTCCCATATGGTCACTGAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000145266.8 ENSMUST00000232450.2 |
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| CDS-3UTR CCA 90 bp | GGTTTTTCAGTGACCATATGGGAGGGCCAAGTTCATGTTCCCATTGCCATCTCCTCCCAGTGTAAGCCCTaGCTCAGTGCTGTTGTTATC | + |
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Preference number: 4 (lower is better) Translates to: GFSVTIWEGQVHVPIAISSQCKP*LSAVVI Trigger: GATAACAACAGCACTGAGCCAGGGCTTACACTGGGA...GGAGATGGCAATGGGAACATGAACTTGGCCCTCCCATATGGTCACTGAAAAACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000145266.8 |
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| CDS-3UTR GCA 90 bp | GGTTTTTCAGTGACCATATGGGAGGGCCAAGTTCATGTTCCCATTGCCATCTCCGGGGCTCACATGATGTaGCAACAACTCCTTGTAATG | + |
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Preference number: 4 (lower is better) Translates to: GFSVTIWEGQVHVPIAISGAHMM*QQLLVM Trigger: CATTACAAGGAGTTGTTGGCACATCATGTGAGCCCC...GGAGATGGCAATGGGAACATGAACTTGGCCCTCCCATATGGTCACTGAAAAACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000145266.8 |
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| CDS-3UTR CCA 90 bp | CCATTGCCATCTCCATCTTCATCCACTAAGGAGAAAACTTCTTTAGTTCAGCAGCTTTGCTCGGCACTGTaGGCAGAAGTAGCCTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: PLPSPSSSTKEKTSLVQQLCSAL*AEVASQ Trigger: CTGGGAGGCTACTTCTGCCCACAGTGCCGAGCAAAG...CTGCTGAACTAAAGAAGTTTTCTCCTTAGTGGATGAAGATGGAGATGGCAATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000145266.8 ENSMUST00000232450.2 |
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| CDS-3UTR TCA 90 bp | ATTCTGGGATATCCTGAATTGGCTTGTTGGGGTTTTTCAGTGACCATATGGGAGTCAGTCATGATGCGCTaGAGGAGTTGGGATCTTATG | + |
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Preference number: 4 (lower is better) Translates to: ILGYPELACWGFSVTIWESVMMR*RSWDLM Trigger: CATAAGATCCCAACTCCTTCAGCGCATCATGACTGA...CTCCCATATGGTCACTGAAAAACCCCAACAAGCCAATTCAGGATATCCCAGAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000232450.2 |
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| CDS-3UTR TCA 90 bp | TATCCTGAATTGGCTTGTTGGGGTTTTTCAGTGACCATATGGGAGGGCCAAGTTTTTCCTTGGGTTTCCTaGGAGTTCAGTCAGTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: YPELACWGFSVTIWEGQVFPWVS*EFSQFF Trigger: GAAAAACTGACTGAACTCTCAGGAAACCCAAGGAAA...AACTTGGCCCTCCCATATGGTCACTGAAAAACCCCAACAAGCCAATTCAGGATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000145266.8 |
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| CDS-3UTR GCA 90 bp | TATCCTGAATTGGCTTGTTGGGGTTTTTCAGTGACCATATGGGAGGGCCAAGTTCCAGCAACTTTAAAGTaGAAGTCAGTCTATTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: YPELACWGFSVTIWEGQVPATLK*KSVYWA Trigger: AGCCCAATAGACTGACTTGCACTTTAAAGTTGCTGG...AACTTGGCCCTCCCATATGGTCACTGAAAAACCCCAACAAGCCAATTCAGGATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000145266.8 |
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| CDS-3UTR GCA 90 bp | CCATCTTCATCCACTAAGGAGAAAACTTCTTTAGTTCAGCAGTTTGTTTTCAGCGCTGAAGGATGGTTTTaGATCCTGATCAGACAAAGA | + |
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Preference number: 4 (lower is better) Translates to: PSSSTKEKTSLVQQFVFSAEGWF*ILIRQR Trigger: TCTTTGTCTGATCAGGATGCAAAACCATCCTTCAGC...GCTGAAAACAAACTGCTGAACTAAAGAAGTTTTCTCCTTAGTGGATGAAGATGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000145266.8 |
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| CDS-3UTR CCA 90 bp | CCATCTCCATCTTCATCCACTAAGGAGAAAACTTCTTTAGTTCAGCAGTTTGTTTCATCTAAGATAACATaGTATGTGCCACCAGTTTCA | + |
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Preference number: 4 (lower is better) Translates to: PSPSSSTKEKTSLVQQFVSSKIT*YVPPVS Trigger: TGAAACTGGTGGCACATACCATGTTATCTTAGATGA...AACAAACTGCTGAACTAAAGAAGTTTTCTCCTTAGTGGATGAAGATGGAGATGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145266.8 |
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| CDS-3UTR CAA 90 bp | TCCACTAACATATTTCCCAAACGGCTGGTAGTGCCCTTCTTTCTCCACATTCAGATGTTATATGTTTCCTaGGGTTTCCTGAGAGTTCAG | + |
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Preference number: 5 (lower is better) Translates to: STNIFPKRLVVPFFLHIQMLYVS*GFLRVQ Trigger: CTGAACTCTCAGGAAACCCAAGGAAACATATAACAT...CTGAATGTGGAGAAAGAAGGGCACTACCAGCCGTTTGGGAAATATGTTAGTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145266.8 |
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