Pregenerated sensors for GTF2F2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067995Ensembl transcript IDs: ENSMUST00000088922.5
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGTCTTGCTGTGTATTCCAGGCTGGTCTCAAACTCACACCTGCCTaGCTCAGTCTCCTGAGTTTTGGACACATTCATGTGCCAGCATGC | + |
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Preference number: 1 (lower is better) Translates to: RSCCVFQAGLKLTPA*LSLLSFGHIHVPAC Trigger: GCATGCTGGCACATGAATGTGTCCAAAACTCAGGAGACTGAGGCAGGCAGGTGTGAGTTTGAGACCAGCCTGGAATACACAGCAAGACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| 3UTR-3UTR TCA 90 bp | GAGAGGAGTGGTAGACCCAGGTGTCTTTGTCCTGTCAAGGCAGGCAGGCAGGCAAGGCCTGCCTGTGACTaGCTCTTTAGCACACGAGTC | + |
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Preference number: 2 (lower is better) Translates to: ERSGRPRCLCPVKAGRQARPACD*LFSTRV Trigger: GACTCGTGTGCTAAAGAGTCAGTCACAGGCAGGCCT...TGCCTGCCTGCCTGCCTTGACAGGACAAAGACACCTGGGTCTACCACTCCTCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| 3UTR-3UTR CCA 90 bp | GTGAAACATTACCTCTGCAGACAGGGACAAGTTCCCTCTTCAGTTGCAGAAGGAAGGCAACTTGTGGTGTaGGCTGGCCAGGCCTGCCTG | + |
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Preference number: 2 (lower is better) Translates to: VKHYLCRQGQVPSSVAEGRQLVV*AGQACL Trigger: CAGGCAGGCCTGGCCAGCCCACACCACAAGTTGCCT...TCCTTCTGCAACTGAAGAGGGAACTTGTCCCTGTCTGCAGAGGTAATGTTTCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| 3UTR-3UTR GCA 90 bp | ACAGGGACAAGTTCCCTCTTCAGTTGCAGAAGGAATTTGGACTCTGTGTTCCTGTCTCAAACTCACACCTaGCTGCCTCAGTCTCCTGAG | + |
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Preference number: 2 (lower is better) Translates to: TGTSSLFSCRRNLDSVFLSQTHT*LPQSPE Trigger: CTCAGGAGACTGAGGCAGGCAGGTGTGAGTTTGAGA...CAGGAACACAGAGTCCAAATTCCTTCTGCAACTGAAGAGGGAACTTGTCCCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| 3UTR-3UTR CCA 90 bp | GGAGGTGAAACATTACCTCTGCAGACAGGGACAAGTTCCCTCTTCAGTTGCAGACTGTGTATTCCAGGCTaGTCTCAAACTCACACCTGC | + |
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Preference number: 2 (lower is better) Translates to: GGETLPLQTGTSSLFSCRLCIPG*SQTHTC Trigger: GCAGGTGTGAGTTTGAGACCAGCCTGGAATACACAG...TCTGCAACTGAAGAGGGAACTTGTCCCTGTCTGCAGAGGTAATGTTTCACCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| 3UTR TCA 72 bp | CTGGTCTCAAACTCACACCTGCCTGCCTCAGTCTCCTaGGTTTTGGACACATTCATGTGCCAGCATGCCCGC | + |
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Preference number: 3 (lower is better) Translates to: LVSNSHLPASVS*VLDTFMCQHAR Trigger: GCGGGCATGCTGGCACATGAATGTGTCCAAAACTCAGGAGACTGAGGCAGGCAGGTGTGAGTTTGAGACCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| 3UTR CCA 72 bp | CAAACTCACACCTGCCTGCCTCAGTCTCCTGAGTTTTaGACACATTCATGTGCCAGCATGCCCGCTGAATGG | + |
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Preference number: 3 (lower is better) Translates to: QTHTCLPQSPEF*THSCASMPAEW Trigger: CCATTCAGCGGGCATGCTGGCACATGAATGTGTCCAAAACTCAGGAGACTGAGGCAGGCAGGTGTGAGTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| 3UTR GCA 72 bp | TGTGTATTCCAGGCTGGTCTCAAACTCACACCTGCCTaGCTCAGTCTCCTGAGTTTTGGACACATTCATGTG | + |
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Preference number: 3 (lower is better) Translates to: CVFQAGLKLTPA*LSLLSFGHIHV Trigger: CACATGAATGTGTCCAAAACTCAGGAGACTGAGGCAGGCAGGTGTGAGTTTGAGACCAGCCTGGAATACACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| 3UTR GCA 72 bp | TTGCTGTGTATTCCAGGCTGGTCTCAAACTCACACCTaGCTGCCTCAGTCTCCTGAGTTTTGGACACATTCA | + |
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Preference number: 3 (lower is better) Translates to: LLCIPGWSQTHT*LPQSPEFWTHS Trigger: TGAATGTGTCCAAAACTCAGGAGACTGAGGCAGGCAGGTGTGAGTTTGAGACCAGCCTGGAATACACAGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| CDS-3UTR CCA 90 bp | CAGGCTGGTCTCAAACTCACACCTGCCTGCCTCAGTCTCCTGAGTTTTGGACACCGCCGGTGTTCTGTTTaGCGCCCGTCAGATCGAGTT | + |
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Preference number: 4 (lower is better) Translates to: QAGLKLTPACLSLLSFGHRRCSV*RPSDRV Trigger: AACTCGATCTGACGGGCGCCAAACAGAACACCGGCG...GTGTCCAAAACTCAGGAGACTGAGGCAGGCAGGTGTGAGTTTGAGACCAGCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| CDS-3UTR CCA 90 bp | GAGAGGAGTGGTAGACCCAGGTGTCTTTGTCCTGTCAAGGCAGGCAGGCAGGCAGCTTTTGCCCATTGCTaGGACAAATATTTAGGAACC | + |
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Preference number: 4 (lower is better) Translates to: ERSGRPRCLCPVKAGRQAAFAHC*DKYLGT Trigger: GGTTCCTAAATATTTGTCCCAGCAATGGGCAAAAGC...TGCCTGCCTGCCTGCCTTGACAGGACAAAGACACCTGGGTCTACCACTCCTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| CDS-3UTR TCA 90 bp | CCTCAGTCTCCTGAGTTTTGGACACATTCATGTGCCAGCATGCCCGCTGAATGGACCTCAGTCCTTCCTTaGTTTTTGGCAATCCTCAGT | + |
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Preference number: 4 (lower is better) Translates to: PQSPEFWTHSCASMPAEWTSVLP*FLAILS Trigger: ACTGAGGATTGCCAAAAATCAAGGAAGGACTGAGGT...CCATTCAGCGGGCATGCTGGCACATGAATGTGTCCAAAACTCAGGAGACTGAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| CDS-3UTR GCA 90 bp | ACTCACACCTGCCTGCCTCAGTCTCCTGAGTTTTGGACACATTCATGTGCCAGCTGTCCGCCAACACTTTaGAAGACAAATGGGTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: THTCLPQSPEFWTHSCASCPPTL*KTNGCS Trigger: AGAACACCCATTTGTCTTGCAAAGTGTTGGCGGACA...GCTGGCACATGAATGTGTCCAAAACTCAGGAGACTGAGGCAGGCAGGTGTGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| CDS-3UTR GCA 90 bp | ACAGGGACAAGTTCCCTCTTCAGTTGCAGAAGGAATTTGGACTCTGTGTTCCTGGACGTGTTGTTTGTCTaGCCGAGCTCGCTTTCCATC | + |
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Preference number: 4 (lower is better) Translates to: TGTSSLFSCRRNLDSVFLDVLFV*PSSLSI Trigger: GATGGAAAGCGAGCTCGGGCAGACAAACAACACGTC...CAGGAACACAGAGTCCAAATTCCTTCTGCAACTGAAGAGGGAACTTGTCCCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| CDS-3UTR TCA 90 bp | GTGGAGGTGAAACATTACCTCTGCAGACAGGGACAAGTTCCCTCTTCAGTTGCACTCGTTCAAAGTAAATaGTACCTCAGTCCTTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: VEVKHYLCRQGQVPSSVALVQSK*YLSPSL Trigger: CAAGGAAGGACTGAGGTATCATTTACTTTGAACGAG...TGCAACTGAAGAGGGAACTTGTCCCTGTCTGCAGAGGTAATGTTTCACCTCCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| CDS-3UTR CCA 90 bp | GTGGAGGTGAAACATTACCTCTGCAGACAGGGACAAGTTCCCTCTTCAGTTGCACAACAGGCTTGTAATTaGTTGTCACAACTTTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: VEVKHYLCRQGQVPSSVAQQACN*LSQLCP Trigger: TGGACAAAGTTGTGACAACCAATTACAAGCCTGTTG...TGCAACTGAAGAGGGAACTTGTCCCTGTCTGCAGAGGTAATGTTTCACCTCCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| 3UTR CAA 72 bp | ATTACCTCTGCAGACAGGGACAAGTTCCCTCTTCAGTaGCAGAAGGAATTTGGACTCTGTGTTCCTGTAATC | + |
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Preference number: 4 (lower is better) Translates to: ITSADRDKFPLQ*QKEFGLCVPVI Trigger: GATTACAGGAACACAGAGTCCAAATTCCTTCTGCAACTGAAGAGGGAACTTGTCCCTGTCTGCAGAGGTAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| CDS-3UTR TCA 90 bp | TTAGTTCCTCAGAGACAAAATTTTCATTTAGGAGATATCCCATTTACGCTTGCATCTAGGAGCACTGACTaGAGCTGGTTTCCCACCGAT | + |
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Preference number: 4 (lower is better) Translates to: LVPQRQNFHLGDIPFTLASRSTD*SWFPTD Trigger: ATCGGTGGGAAACCAGCTTCAGTCAGTGCTCCTAGA...TGCAAGCGTAAATGGGATATCTCCTAAATGAAAATTTTGTCTCTGAGGAACTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| CDS-3UTR TCA 90 bp | CCCACCTTTCTCCTTTCTTACCTTAGTTCCTCAGAGACAAAATTTTCATTTAGGTTCCCACCGATGTCATaGATATTTGCAAGATCCTCG | + |
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Preference number: 4 (lower is better) Translates to: PTFLLSYLSSSETKFSFRFPPMS*IFARSS Trigger: CGAGGATCTTGCAAATATTCATGACATCGGTGGGAA...CCTAAATGAAAATTTTGTCTCTGAGGAACTAAGGTAAGAAAGGAGAAAGGTGGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| CDS-3UTR CAA 90 bp | AGTGGTAGACCCAGGTGTCTTTGTCCTGTCAAGGCAGGCAGGCAGGCAACTTGTTTGGTTGTCACAACTTaGTCCAGCTGTTGTGAGAGC | + |
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Preference number: 5 (lower is better) Translates to: SGRPRCLCPVKAGRQATCLVVTT*SSCCES Trigger: GCTCTCACAACAGCTGGACAAAGTTGTGACAACCAA...ACAAGTTGCCTGCCTGCCTGCCTTGACAGGACAAAGACACCTGGGTCTACCACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| CDS-3UTR CAA 90 bp | TTGCTGTGTATTCCAGGCTGGTCTCAAACTCACACCTGCCTGCCTCAGTCTCCTCAGGCTTGTAATTGGTaGTCACAACTTTGTCCAGCT | + |
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Preference number: 5 (lower is better) Translates to: LLCIPGWSQTHTCLPQSPQACNW*SQLCPA Trigger: AGCTGGACAAAGTTGTGACAACCAATTACAAGCCTG...AGGAGACTGAGGCAGGCAGGTGTGAGTTTGAGACCAGCCTGGAATACACAGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| CDS-3UTR CAA 90 bp | GAGTTTTGGACACATTCATGTGCCAGCATGCCCGCTGAATGGTGTAACATGAGTTACCTCAGTCCTTCCTaGATTTTTGGCAATCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: EFWTHSCASMPAEWCNMSYLSPS*IFGNPQ Trigger: CTGAGGATTGCCAAAAATCAAGGAAGGACTGAGGTA...ACTCATGTTACACCATTCAGCGGGCATGCTGGCACATGAATGTGTCCAAAACTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| CDS-3UTR CAA 90 bp | TTATGGAATCTCAGCTTTAACAGTTTACTGAGAGGAGTGGTAGACCCAGGTGTCAGAGGCTTTTGCCCATaGCTGGGACAAATATTTAGG | + |
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Preference number: 5 (lower is better) Translates to: LWNLSFNSLLRGVVDPGVRGFCP*LGQIFR Trigger: CCTAAATATTTGTCCCAGCAATGGGCAAAAGCCTCT...GACACCTGGGTCTACCACTCCTCTCAGTAAACTGTTAAAGCTGAGATTCCATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| CDS-3UTR CAA 90 bp | TTAGTTCCTCAGAGACAAAATTTTCATTTAGGAGATATCCCATTTACGCTTGCACTCTTCCAGAGGCTTTaGCCCATTGCTGGGACAAAT | + |
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Preference number: 5 (lower is better) Translates to: LVPQRQNFHLGDIPFTLALFQRL*PIAGTN Trigger: ATTTGTCCCAGCAATGGGCAAAAGCCTCTGGAAGAG...TGCAAGCGTAAATGGGATATCTCCTAAATGAAAATTTTGTCTCTGAGGAACTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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| CDS CAA 72 bp | TTAGGAACCTTGACCAGCCACACGCCGGTGTTCTGTTaGGCGCCCGTCAGATCGAGTTCCCCGCGCTCCGCC | + |
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Preference number: 6 (lower is better) Translates to: LGTLTSHTPVFC*APVRSSSPRSA Trigger: GGCGGAGCGCGGGGAACTCGATCTGACGGGCGCCAAACAGAACACCGGCGTGTGGCTGGTCAAGGTTCCTAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088922.5 |
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