RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GTF2A1L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024154

Ensembl transcript IDs: ENSMUST00000024970.11, ENSMUST00000161481.2

Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GGAGGAAAGCCCACACCGGGAAGGCTGAGGTATGGAGAGCTTTCCTaGGGCCTCAGCTCATTTCCCGGGAGAAGGCGCCTGTCGCTCGCA +
Preference number: 5 (lower is better)
Translates to: GGKPTPGRLRYGELS*GLSSFPGRRRLSLA
Trigger: TGCGAGCGACAGGCGCCTTCTCCCGGGAAATGAGCTGAGGCCGCAGGAAAGCTCTCCATACCTCAGCCTTCCCGGTGTGGGCTTTCCTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024970.11
ENSMUST00000161481.2
CDS GCA 90 bp CATGCCTGCTGGGACGTGGATCGGATAGCCAGCAAAGGCAAAGTTTaGACCACAGTTGGCGGTGTTCAGGTCTTCCGGCGTAAAACTCGG +
Preference number: 5 (lower is better)
Translates to: HACWDVDRIASKGKV*TTVGGVQVFRRKTR
Trigger: CCGAGTTTTACGCCGGAAGACCTGAACACCGCCAACTGTGGTGCAAACTTTGCCTTTGCTGGCTATCCGATCCACGTCCCAGCAGGCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024970.11
CDS CCA 90 bp AAGGCGCCTGTCGCTCGCAGCATTTTCTACATGTGTCCTGTCCACTaGAGGAGGATGCAGAATGGGAGGTGGCTGCAGCACAGCTTCCAT +
Preference number: 5 (lower is better)
Translates to: KAPVARSIFYMCPVH*RRMQNGRWLQHSFH
Trigger: ATGGAAGCTGTGCTGCAGCCACCTCCCATTCTGCATCCTCCTCCAGTGGACAGGACACATGTAGAAAATGCTGCGAGCGACAGGCGCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024970.11
ENSMUST00000161481.2
CDS GCA 90 bp TGTAACACTTTGGTTTCCCAGAGCTTCTTCAGGTCTTTCAACACCTaGTCCTCGATGCCTTCCTCAGCAAACAGGTCCCGCACGCCCTCG +
Preference number: 5 (lower is better)
Translates to: CNTLVSQSFFRSFNT*SSMPSSANRSRTPS
Trigger: CGAGGGCGTGCGGGACCTGTTTGCTGAGGAAGGCATCGAGGAGCAGGTGTTGAAAGACCTGAAGAAGCTCTGGGAAACCAAAGTGTTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024970.11
ENSMUST00000161481.2
CDS CCA 90 bp GACTTTGTAAAGGTGACCAGATGCCGTCTGGAAGGCCATGCCTGCTaGGACGTGGATCGGATAGCCAGCAAAGGCAAAGTTTGCACCACA +
Preference number: 5 (lower is better)
Translates to: DFVKVTRCRLEGHAC*DVDRIASKGKVCTT
Trigger: TGTGGTGCAAACTTTGCCTTTGCTGGCTATCCGATCCACGTCCCAGCAGGCATGGCCTTCCAGACGGCATCTGGTCACCTTTACAAAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024970.11
CDS GCA 90 bp ATTGACTTTGTAAAGGTGACCAGATGCCGTCTGGAAGGCCATGCCTaGTGGGACGTGGATCGGATAGCCAGCAAAGGCAAAGTTTGCACC +
Preference number: 5 (lower is better)
Translates to: IDFVKVTRCRLEGHA*WDVDRIASKGKVCT
Trigger: GGTGCAAACTTTGCCTTTGCTGGCTATCCGATCCACGTCCCAGCAGGCATGGCCTTCCAGACGGCATCTGGTCACCTTTACAAAGTCAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024970.11
CDS CCA 90 bp TTCTACATGTGTCCTGTCCACTGGAGGAGGATGCAGAATGGGAGGTaGCTGCAGCACAGCTTCCATTCTGAGGGATTTCTCAGTTGCTGC +
Preference number: 5 (lower is better)
Translates to: FYMCPVHWRRMQNGR*LQHSFHSEGFLSCC
Trigger: GCAGCAACTGAGAAATCCCTCAGAATGGAAGCTGTGCTGCAGCCACCTCCCATTCTGCATCCTCCTCCAGTGGACAGGACACATGTAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024970.11
ENSMUST00000161481.2
CDS GCA 90 bp GGGAGGTGGCTGCAGCACAGCTTCCATTCTGAGGGATTTCTCAGTTaGTGCTTGAAGAGAACATGGGTGCAATGTTGGAACAGTGGTCTG +
Preference number: 5 (lower is better)
Translates to: GRWLQHSFHSEGFLS*CLKRTWVQCWNSGL
Trigger: CAGACCACTGTTCCAACATTGCACCCATGTTCTCTTCAAGCAGCAACTGAGAAATCCCTCAGAATGGAAGCTGTGCTGCAGCCACCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024970.11
ENSMUST00000161481.2
CDS CCA 90 bp TCTCAGTTGCTGCTTGAAGAGAACATGGGTGCAATGTTGGAACAGTaGTCTGTATTACTAAAGGCTGCCCGAGCTGCTGAAGGACTTGCT +
Preference number: 5 (lower is better)
Translates to: SQLLLEENMGAMLEQ*SVLLKAARAAEGLA
Trigger: AGCAAGTCCTTCAGCAGCTCGGGCAGCCTTTAGTAATACAGACCACTGTTCCAACATTGCACCCATGTTCTCTTCAAGCAGCAACTGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024970.11
ENSMUST00000161481.2
CDS TCA 90 bp GGCTGCAGCACAGCTTCCATTCTGAGGGATTTCTCAGTTGCTGCTTaGAGAGAACATGGGTGCAATGTTGGAACAGTGGTCTGTATTACT +
Preference number: 5 (lower is better)
Translates to: GCSTASILRDFSVAA*REHGCNVGTVVCIT
Trigger: AGTAATACAGACCACTGTTCCAACATTGCACCCATGTTCTCTTCAAGCAGCAACTGAGAAATCCCTCAGAATGGAAGCTGTGCTGCAGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024970.11
ENSMUST00000161481.2
CDS CCA 90 bp GTCCACTTCTTCAAGCACATTGAGGTCGCCGGCATCAATGATCCCTaGGAATTCATTCTCATCTGCATCCCTTATACTTCCCATCTCTTC +
Preference number: 5 (lower is better)
Translates to: VHFFKHIEVAGINDP*EFILICIPYTSHLF
Trigger: GAAGAGATGGGAAGTATAAGGGATGCAGATGAGAATGAATTCCCAGGGATCATTGATGCCGGCGACCTCAATGTGCTTGAAGAAGTGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024970.11
CDS GCA 72 bp CCCACACCGGGAAGGCTGAGGTATGGAGAGCTTTCCTaGGGCCTCAGCTCATTTCCCGGGAGAAGGCGCCTG +
Preference number: 6 (lower is better)
Translates to: PTPGRLRYGELS*GLSSFPGRRRL
Trigger: CAGGCGCCTTCTCCCGGGAAATGAGCTGAGGCCGCAGGAAAGCTCTCCATACCTCAGCCTTCCCGGTGTGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024970.11
ENSMUST00000161481.2
CDS TCA 72 bp GAGCGGCCTGAGGAGGAAAGCCCACACCGGGAAGGCTaGGGTATGGAGAGCTTTCCTGCGGCCTCAGCTCAT +
Preference number: 6 (lower is better)
Translates to: ERPEEESPHREG*GMESFPAASAH
Trigger: ATGAGCTGAGGCCGCAGGAAAGCTCTCCATACCTCAGCCTTCCCGGTGTGGGCTTTCCTCCTCAGGCCGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024970.11
ENSMUST00000161481.2
CDS TCA 72 bp AGCACTGGCTCCAGGCTAGACTCTGTCAGAGCGGCCTaGGGAGGAAAGCCCACACCGGGAAGGCTGAGGTAT +
Preference number: 6 (lower is better)
Translates to: STGSRLDSVRAA*GGKPTPGRLRY
Trigger: ATACCTCAGCCTTCCCGGTGTGGGCTTTCCTCCTCAGGCCGCTCTGACAGAGTCTAGCCTGGAGCCAGTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024970.11
ENSMUST00000161481.2
CDS CCA 72 bp GTCTTCCGGCGTAAAACTCGGCAGAGTTCTACCAGCTaGGATCAGCAGCGATGCTTCGGGCTGCAGGGCTGG +
Preference number: 6 (lower is better)
Translates to: VFRRKTRQSSTS*DQQRCFGLQGW
Trigger: CCAGCCCTGCAGCCCGAAGCATCGCTGCTGATCCCAGCTGGTAGAACTCTGCCGAGTTTTACGCCGGAAGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024970.11
CDS GCA 72 bp AGAGCTTCTTCAGGTCTTTCAACACCTGCTCCTCGATaGCTTCCTCAGCAAACAGGTCCCGCACGCCCTCGA +
Preference number: 6 (lower is better)
Translates to: RASSGLSTPAPR*LPQQTGPARPR
Trigger: TCGAGGGCGTGCGGGACCTGTTTGCTGAGGAAGGCATCGAGGAGCAGGTGTTGAAAGACCTGAAGAAGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024970.11
ENSMUST00000161481.2
CDS GCA 72 bp TGGGACGTGGATCGGATAGCCAGCAAAGGCAAAGTTTaGACCACAGTTGGCGGTGTTCAGGTCTTCCGGCGT +
Preference number: 6 (lower is better)
Translates to: WDVDRIASKGKV*TTVGGVQVFRR
Trigger: ACGCCGGAAGACCTGAACACCGCCAACTGTGGTGCAAACTTTGCCTTTGCTGGCTATCCGATCCACGTCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024970.11
CDS GCA 72 bp GTAAAGGTGACCAGATGCCGTCTGGAAGGCCATGCCTaGTGGGACGTGGATCGGATAGCCAGCAAAGGCAAA +
Preference number: 6 (lower is better)
Translates to: VKVTRCRLEGHA*WDVDRIASKGK
Trigger: TTTGCCTTTGCTGGCTATCCGATCCACGTCCCAGCAGGCATGGCCTTCCAGACGGCATCTGGTCACCTTTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024970.11
CDS TCA 72 bp GAAAGGGTCACTGTGCAGATTCTGAGTCAGGCTCGCTaGGACACCAAGCACTGGCTCCAGGCTAGACTCTGT +
Preference number: 6 (lower is better)
Translates to: ERVTVQILSQAR*DTKHWLQARLC
Trigger: ACAGAGTCTAGCCTGGAGCCAGTGCTTGGTGTCTCAGCGAGCCTGACTCAGAATCTGCACAGTGACCCTTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024970.11
ENSMUST00000161481.2
CDS GCA 72 bp TTGGTTTCCCAGAGCTTCTTCAGGTCTTTCAACACCTaGTCCTCGATGCCTTCCTCAGCAAACAGGTCCCGC +
Preference number: 6 (lower is better)
Translates to: LVSQSFFRSFNT*SSMPSSANRSR
Trigger: GCGGGACCTGTTTGCTGAGGAAGGCATCGAGGAGCAGGTGTTGAAAGACCTGAAGAAGCTCTGGGAAACCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024970.11
ENSMUST00000161481.2
CDS CCA 72 bp CTGAAGTACAATTCTTCTCTGACACACGGAGGCTGCTaGGCTCCTCTGCTTTTCTCAGTTGCTTTGTGGAGT +
Preference number: 6 (lower is better)
Translates to: LKYNSSLTHGGC*APLLFSVALWS
Trigger: ACTCCACAAAGCAACTGAGAAAAGCAGAGGAGCCCAGCAGCCTCCGTGTGTCAGAGAAGAATTGTACTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024970.11
CDS GCA 72 bp CTGCAGCACAGCTTCCATTCTGAGGGATTTCTCAGTTaGTGCTTGAAGAGAACATGGGTGCAATGTTGGAAC +
Preference number: 6 (lower is better)
Translates to: LQHSFHSEGFLS*CLKRTWVQCWN
Trigger: GTTCCAACATTGCACCCATGTTCTCTTCAAGCAGCAACTGAGAAATCCCTCAGAATGGAAGCTGTGCTGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024970.11
ENSMUST00000161481.2
CDS CCA 72 bp CTGCTTGAAGAGAACATGGGTGCAATGTTGGAACAGTaGTCTGTATTACTAAAGGCTGCCCGAGCTGCTGAA +
Preference number: 6 (lower is better)
Translates to: LLEENMGAMLEQ*SVLLKAARAAE
Trigger: TTCAGCAGCTCGGGCAGCCTTTAGTAATACAGACCACTGTTCCAACATTGCACCCATGTTCTCTTCAAGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024970.11
ENSMUST00000161481.2
CDS CAA 90 bp GTGCTGTTTCTGAAGAAGTCCTCTGTGGCTTTAGATTGTAACACTTaGGTTTCCCAGAGCTTCTTCAGGTCTTTCAACACCTGCTCCTCG +
Preference number: 6 (lower is better)
Translates to: VLFLKKSSVALDCNT*VSQSFFRSFNTCSS
Trigger: CGAGGAGCAGGTGTTGAAAGACCTGAAGAAGCTCTGGGAAACCAAAGTGTTACAATCTAAAGCCACAGAGGACTTCTTCAGAAACAGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024970.11
ENSMUST00000161481.2
CDS CAA 90 bp GCAGTTGAATCTTCATTCGATACGCTGTCCACTTCTTCAAGCACATaGAGGTCGCCGGCATCAATGATCCCTGGGAATTCATTCTCATCT +
Preference number: 6 (lower is better)
Translates to: AVESSFDTLSTSSST*RSPASMIPGNSFSS
Trigger: AGATGAGAATGAATTCCCAGGGATCATTGATGCCGGCGACCTCAATGTGCTTGAAGAAGTGGACAGCGTATCGAATGAAGATTCAACTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024970.11
CDS TCA 72 bp ACAGCTTCCATTCTGAGGGATTTCTCAGTTGCTGCTTaGAGAGAACATGGGTGCAATGTTGGAACAGTGGTC +
Preference number: 6 (lower is better)
Translates to: TASILRDFSVAA*REHGCNVGTVV
Trigger: GACCACTGTTCCAACATTGCACCCATGTTCTCTTCAAGCAGCAACTGAGAAATCCCTCAGAATGGAAGCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024970.11
ENSMUST00000161481.2
CDS CAA 72 bp TCTCAGTTGCTGCTTGAAGAGAACATGGGTGCAATGTaGGAACAGTGGTCTGTATTACTAAAGGCTGCCCGA +
Preference number: 6 (lower is better)
Translates to: SQLLLEENMGAM*EQWSVLLKAAR
Trigger: TCGGGCAGCCTTTAGTAATACAGACCACTGTTCCAACATTGCACCCATGTTCTCTTCAAGCAGCAACTGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024970.11
ENSMUST00000161481.2
CDS GCA 72 bp ATTACATTCTCTGTATCAAACAGGTCTGGCACATCCTaGTCACTGACATCATCGCCAGAATTTAGGGGATCC +
Preference number: 6 (lower is better)
Translates to: ITFSVSNRSGTS*SLTSSPEFRGS
Trigger: GGATCCCCTAAATTCTGGCGATGATGTCAGTGAGCAGGATGTGCCAGACCTGTTTGATACAGAGAATGTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024970.11
CDS CAA 72 bp GGGCATTTATTTGATGGTCCTCGTTGTCGCTGCTATTaGCAGTTGAATCTTCATTCGATACGCTGTCCACTT +
Preference number: 6 (lower is better)
Translates to: GHLFDGPRCRCY*QLNLHSIRCPL
Trigger: AAGTGGACAGCGTATCGAATGAAGATTCAACTGCAAATAGCAGCGACAACGAGGACCATCAAATAAATGCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024970.11
CDS CAA 72 bp CTCTTCAGTAGAAGAGTTATCGCCGGTTCCATCTATTaGGATTATTTCATTAATATCATCATCGGTTACCCG +
Preference number: 6 (lower is better)
Translates to: LFSRRVIAGSIY*DYFINIIIGYP
Trigger: CGGGTAACCGATGATGATATTAATGAAATAATCCAAATAGATGGAACCGGCGATAACTCTTCTACTGAAGAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024970.11
CDS CAA 90 bp ACTTCCCATCTCTTCAGTAGAAGAGTTATCGCCGGTTCCATCTATTaGGATTATTTCATTAATATCATCATCGGTTACCCGAATATTCAG +
Preference number: 6 (lower is better)
Translates to: TSHLFSRRVIAGSIY*DYFINIIIGYPNIQ
Trigger: CTGAATATTCGGGTAACCGATGATGATATTAATGAAATAATCCAAATAGATGGAACCGGCGATAACTCTTCTACTGAAGAGATGGGAAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024970.11