RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GTF2A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020962

Ensembl transcript IDs: ENSMUST00000021345.14, ENSMUST00000063314.7

Found 136 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGAAGTGAGCTGTGTGAGCGAGAGTCCCTGCAGGTCCCAGGAGGCTaGCTCTTTGTTCTGTGGAGCCCCTTACAGGAACAGAGCTACACA +
Preference number: 1 (lower is better)
Translates to: RSELCERESLQVPGG*LFVLWSPLQEQSYT
Trigger: TGTGTAGCTCTGTTCCTGTAAGGGGCTCCACAGAACAAAGAGGCAGCCTCCTGGGACCTGCAGGGACTCTCGCTCACACAGCTCACTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR CCA 90 bp AGGTGCTACAGTTCCACGGCTTGCCGGTCTGAAGTAGTGTCTATGTaGTCAAGGCCTAGCTCTGCTCCAGGAGCTTTGCTTCTACTGCGC +
Preference number: 1 (lower is better)
Translates to: RCYSSTACRSEVVSM*SRPSSAPGALLLLR
Trigger: GCGCAGTAGAAGCAAAGCTCCTGGAGCAGAGCTAGGCCTTGACCACATAGACACTACTTCAGACCGGCAAGCCGTGGAACTGTAGCACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR TCA 90 bp CACATCTCACGTGTGCTGTACAACTGCAGCTCCATGGGACCTTTGTaGGATGAAAACAGATTCCTGAGAGCCCATTTGGGGTTTCCTCTT +
Preference number: 1 (lower is better)
Translates to: HISRVLYNCSSMGPL*DENRFLRAHLGFPL
Trigger: AAGAGGAAACCCCAAATGGGCTCTCAGGAATCTGTTTTCATCTCACAAAGGTCCCATGGAGCTGCAGTTGTACAGCACACGTGAGATGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR TCA 90 bp AAAAGGTGCCGTCACTCTGGGTACACGTCGAAACGGATCAGTTTCTaGAGACACTGCTTGCGTCCCTGGTTCCACCTTTTGGATAAACTT +
Preference number: 1 (lower is better)
Translates to: KRCRHSGYTSKRISF*RHCLRPWFHLLDKL
Trigger: AAGTTTATCCAAAAGGTGGAACCAGGGACGCAAGCAGTGTCTTCAGAAACTGATCCGTTTCGACGTGTACCCAGAGTGACGGCACCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR TCA 90 bp CTCACGTGTGCTGTACAACTGCAGCTCCATGGGACCTTTGTGAGATaGAAACAGATTCCTGAGAGCCCATTTGGGGTTTCCTCTTATAGA +
Preference number: 1 (lower is better)
Translates to: LTCAVQLQLHGTFVR*KQIPESPFGVSSYR
Trigger: TCTATAAGAGGAAACCCCAAATGGGCTCTCAGGAATCTGTTTTCATCTCACAAAGGTCCCATGGAGCTGCAGTTGTACAGCACACGTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR CCA 90 bp CACAGACTAGAGACTATACTGAGGGAGGGACAACTCAGCAACTCCTaGGATTCTGTTGTTCGCCAAGTTCTATACTTAAACCAGAACTGC +
Preference number: 1 (lower is better)
Translates to: HRLETILREGQLSNS*DSVVRQVLYLNQNC
Trigger: GCAGTTCTGGTTTAAGTATAGAACTTGGCGAACAACAGAATCCCAGGAGTTGCTGAGTTGTCCCTCCCTCAGTATAGTCTCTAGTCTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR CCA 90 bp GCATTTAACAAGCAGGAAAACCTAATTAAACCAAGCATCCATTCCTaGGTCAACTTCGTCTCCAAGCTGTGCCCATCGATCCTTTTCTTT +
Preference number: 1 (lower is better)
Translates to: AFNKQENLIKPSIHS*VNFVSKLCPSILFF
Trigger: AAAGAAAAGGATCGATGGGCACAGCTTGGAGACGAAGTTGACCCAGGAATGGATGCTTGGTTTAATTAGGTTTTCCTGCTTGTTAAATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR GCA 90 bp ATTAAACCAAGCATCCATTCCTGGGTCAACTTCGTCTCCAAGCTGTaGCCATCGATCCTTTTCTTTAAATCTTACGTAGATGTTCAGACA +
Preference number: 1 (lower is better)
Translates to: IKPSIHSWVNFVSKL*PSILFFKSYVDVQT
Trigger: TGTCTGAACATCTACGTAAGATTTAAAGAAAAGGATCGATGGGCACAGCTTGGAGACGAAGTTGACCCAGGAATGGATGCTTGGTTTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR TCA 90 bp TCTATCAAAAGGGTAATTCTTCGGGTCATTCCAACAAATATCTTCTaGTTGAGCCCAACTTGGAGAAACAAATATAGACAAAGCTTTACA +
Preference number: 1 (lower is better)
Translates to: SIKRVILRVIPTNIF*LSPTWRNKYRQSFT
Trigger: TGTAAAGCTTTGTCTATATTTGTTTCTCCAAGTTGGGCTCAATCAGAAGATATTTGTTGGAATGACCCGAAGAATTACCCTTTTGATAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR-3UTR GCA 90 bp CAACAGCAGTCGACAATAGTAGCTCCGAACAGCTATGGCCGGCCCCTCCCACCCCAGGTCCCAGGAGGCTaGCTCTTTGTTCTGTGGAGC +
Preference number: 2 (lower is better)
Translates to: QQQSTIVAPNSYGRPLPPQVPGG*LFVLWS
Trigger: GCTCCACAGAACAAAGAGGCAGCCTCCTGGGACCTG...GGGTGGGAGGGGCCGGCCATAGCTGTTCGGAGCTACTATTGTCGACTGCTGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR-3UTR TCA 90 bp CACACAGACTCGGGCACAGTAAGCACACACGCAGCCCAGAAGGAAAACCTCCACGGGACCTTTGTGAGATaGAAACAGATTCCTGAGAGC +
Preference number: 2 (lower is better)
Translates to: HTDSGTVSTHAAQKENLHGTFVR*KQIPES
Trigger: GCTCTCAGGAATCTGTTTTCATCTCACAAAGGTCCC...GTGGAGGTTTTCCTTCTGGGCTGCGTGTGTGCTTACTGTGCCCGAGTCTGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR-3UTR TCA 90 bp CCAGGAGGCTGCCTCTTTGTTCTGTGGAGCCCCTTACAGGAACAGAGCTACACAGGGACCTTTGTGAGATaGAAACAGATTCCTGAGAGC +
Preference number: 2 (lower is better)
Translates to: PGGCLFVLWSPLQEQSYTGTFVR*KQIPES
Trigger: GCTCTCAGGAATCTGTTTTCATCTCACAAAGGTCCC...TGTGTAGCTCTGTTCCTGTAAGGGGCTCCACAGAACAAAGAGGCAGCCTCCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR-3UTR GCA 90 bp TGCAGGTCCCAGGAGGCTGCCTCTTTGTTCTGTGGAGCCCCTTACAGGAACAGATGCGCCTTTCTGACATaGAGAAGTGAAGTTTTGGCT +
Preference number: 2 (lower is better)
Translates to: CRSQEAASLFCGAPYRNRCAFLT*RSEVLA
Trigger: AGCCAAAACTTCACTTCTGCATGTCAGAAAGGCGCA...TCTGTTCCTGTAAGGGGCTCCACAGAACAAAGAGGCAGCCTCCTGGGACCTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR-3UTR TCA 90 bp CACACAGACTCGGGCACAGTAAGCACACACGCAGCCCAGAAGGAAAACCTCCACCCAACAAATATCTTCTaGTTGAGCCCAACTTGGAGA +
Preference number: 2 (lower is better)
Translates to: HTDSGTVSTHAAQKENLHPTNIF*LSPTWR
Trigger: TCTCCAAGTTGGGCTCAATCAGAAGATATTTGTTGG...GTGGAGGTTTTCCTTCTGGGCTGCGTGTGTGCTTACTGTGCCCGAGTCTGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR-3UTR CCA 90 bp CACACGCAGCCCAGAAGGAAAACCTCCACATCTCACGTGTGCTGTACAACTGCAGAAGTAGTGTCTATGTaGTCAAGGCCTAGCTCTGCT +
Preference number: 2 (lower is better)
Translates to: HTQPRRKTSTSHVCCTTAEVVSM*SRPSSA
Trigger: AGCAGAGCTAGGCCTTGACCACATAGACACTACTTC...TGCAGTTGTACAGCACACGTGAGATGTGGAGGTTTTCCTTCTGGGCTGCGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR-3UTR GCA 90 bp GCAAGAGCTCATCTACTGAAAGGCACACACTTCCATGTTAGTCATCTATGTGAATCACTGGAGCAGCACTaGTGGGCTGCCATAGGTAGT +
Preference number: 2 (lower is better)
Translates to: ARAHLLKGTHFHVSHLCESLEQH*WAAIGS
Trigger: ACTACCTATGGCAGCCCAGCAGTGCTGCTCCAGTGA...TTCACATAGATGACTAACATGGAAGTGTGTGCCTTTCAGTAGATGAGCTCTTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR-3UTR TCA 90 bp GCAAGAGCTCATCTACTGAAAGGCACACACTTCCATGTTAGTCATCTATGTGAAGGGAAGCGAGAGGTATaGGTACTGAGGAGAGTGACA +
Preference number: 2 (lower is better)
Translates to: ARAHLLKGTHFHVSHLCEGKREV*VLRRVT
Trigger: TGTCACTCTCCTCAGTACTCATACCTCTCGCTTCCC...TTCACATAGATGACTAACATGGAAGTGTGTGCCTTTCAGTAGATGAGCTCTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR CAA 90 bp CTGATATACAAGTCAAATCTCTGTATTTTCTTTCCAATGTGCAAATaGGAGCCCAAGTCTACATCACCAATGGCCTGGAAGGGCCACCCA +
Preference number: 2 (lower is better)
Translates to: LIYKSNLCIFFPMCK*EPKSTSPMAWKGHP
Trigger: TGGGTGGCCCTTCCAGGCCATTGGTGATGTAGACTTGGGCTCCAATTTGCACATTGGAAAGAAAATACAGAGATTTGACTTGTATATCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR-3UTR TCA 90 bp GTTTCCTCTTATAGAGTGGGACTGAGCAGTTTTTCTGTACAGAAATTAAGCTGTGGGAAGCGAGAGGTATaGGTACTGAGGAGAGTGACA +
Preference number: 2 (lower is better)
Translates to: VSSYRVGLSSFSVQKLSCGKREV*VLRRVT
Trigger: TGTCACTCTCCTCAGTACTCATACCTCTCGCTTCCC...ACAGCTTAATTTCTGTACAGAAAAACTGCTCAGTCCCACTCTATAAGAGGAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR-3UTR CCA 90 bp GCAAGAGCTCATCTACTGAAAGGCACACACTTCCATGTTAGTCATCTATGTGAAGAAGTAGTGTCTATGTaGTCAAGGCCTAGCTCTGCT +
Preference number: 2 (lower is better)
Translates to: ARAHLLKGTHFHVSHLCEEVVSM*SRPSSA
Trigger: AGCAGAGCTAGGCCTTGACCACATAGACACTACTTC...TTCACATAGATGACTAACATGGAAGTGTGTGCCTTTCAGTAGATGAGCTCTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR-3UTR GCA 90 bp TACTCAGTTGTCCATATACCAATGTCGCTGACTAGTAAGCAAAGCAAGCAACATAGAGGGAGACAACTCTaGATTCGTCCATACAAGCCA +
Preference number: 2 (lower is better)
Translates to: YSVVHIPMSLTSKQSKQHRGRQL*IRPYKP
Trigger: TGGCTTGTATGGACGAATGCAGAGTTGTCTCCCTCT...ATGTTGCTTGCTTTGCTTACTAGTCAGCGACATTGGTATATGGACAACTGAGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR CAA 90 bp GGTACAAATATAAATGGTCAGTTCCTGCTTCAAGACAAGCCCCCTTaGTGTCACTCTGAAAGAAGTGGTTGTTCATGTTTGACAATGTAC +
Preference number: 2 (lower is better)
Translates to: GTNINGQFLLQDKPP*CHSERSGCSCLTMY
Trigger: GTACATTGTCAAACATGAACAACCACTTCTTTCAGAGTGACACAAAGGGGGCTTGTCTTGAAGCAGGAACTGACCATTTATATTTGTACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR-3UTR TCA 90 bp GCAAGAGCTCATCTACTGAAAGGCACACACTTCCATGTTAGTCATCTATGTGAACAAATATCTTCTGATTaGGCCCAACTTGGAGAAACA +
Preference number: 2 (lower is better)
Translates to: ARAHLLKGTHFHVSHLCEQISSD*AQLGET
Trigger: TGTTTCTCCAAGTTGGGCTCAATCAGAAGATATTTG...TTCACATAGATGACTAACATGGAAGTGTGTGCCTTTCAGTAGATGAGCTCTTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR-3UTR TCA 90 bp TGTTTAATAAAAATCCAGTCCTCATCCGTTGCCCTTATGCTTAGACCAACGCACCAAATATCTTCTGATTaGGCCCAACTTGGAGAAACA +
Preference number: 2 (lower is better)
Translates to: CLIKIQSSSVALMLRPTHQISSD*AQLGET
Trigger: TGTTTCTCCAAGTTGGGCTCAATCAGAAGATATTTG...GTGCGTTGGTCTAAGCATAAGGGCAACGGATGAGGACTGGATTTTTATTAAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR-3UTR CCA 90 bp TACTCAGTTGTCCATATACCAATGTCGCTGACTAGTAAGCAAAGCAAGCAACATTGGTTTATTCAATGGTaGTTTGTTCTCCCCGCAAAC +
Preference number: 2 (lower is better)
Translates to: YSVVHIPMSLTSKQSKQHWFIQW*FVLPAN
Trigger: GTTTGCGGGGAGAACAAACCACCATTGAATAAACCA...ATGTTGCTTGCTTTGCTTACTAGTCAGCGACATTGGTATATGGACAACTGAGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR-3UTR TCA 90 bp TACTCAGTTGTCCATATACCAATGTCGCTGACTAGTAAGCAAAGCAAGCAACATACACCGCATGCTACTTaGTTTAAATGGAACACAACA +
Preference number: 2 (lower is better)
Translates to: YSVVHIPMSLTSKQSKQHTPHAT*FKWNTT
Trigger: TGTTGTGTTCCATTTAAATCAAGTAGCATGCGGTGT...ATGTTGCTTGCTTTGCTTACTAGTCAGCGACATTGGTATATGGACAACTGAGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR-3UTR GCA 90 bp AGTTCAGTCTATCAAAAGGGTAATTCTTCGGGTCATTCCAACAAATATCTTCTGTGCGCCTTTCTGACATaGAGAAGTGAAGTTTTGGCT +
Preference number: 2 (lower is better)
Translates to: SSVYQKGNSSGHSNKYLLCAFLT*RSEVLA
Trigger: AGCCAAAACTTCACTTCTGCATGTCAGAAAGGCGCA...CAGAAGATATTTGTTGGAATGACCCGAAGAATTACCCTTTTGATAGACTGAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR-3UTR CCA 90 bp GCAAGAGCTCATCTACTGAAAGGCACACACTTCCATGTTAGTCATCTATGTGAAAGGTACAAATATAAATaGTCAGTTCCTGCTTCAAGA +
Preference number: 2 (lower is better)
Translates to: ARAHLLKGTHFHVSHLCERYKYK*SVPASR
Trigger: TCTTGAAGCAGGAACTGACCATTTATATTTGTACCT...TTCACATAGATGACTAACATGGAAGTGTGTGCCTTTCAGTAGATGAGCTCTTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR GCA 72 bp CCGCCCAGCAACCCCAGGTGCTACAGTTCCACGGCTTaGCGGTCTGAAGTAGTGTCTATGTGGTCAAGGCCT +
Preference number: 3 (lower is better)
Translates to: PPSNPRCYSSTA*RSEVVSMWSRP
Trigger: AGGCCTTGACCACATAGACACTACTTCAGACCGGCAAGCCGTGGAACTGTAGCACCTGGGGTTGCTGGGCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR GCA 72 bp CTGTGTGAGCGAGAGTCCCTGCAGGTCCCAGGAGGCTaGCTCTTTGTTCTGTGGAGCCCCTTACAGGAACAG +
Preference number: 3 (lower is better)
Translates to: LCERESLQVPGG*LFVLWSPLQEQ
Trigger: CTGTTCCTGTAAGGGGCTCCACAGAACAAAGAGGCAGCCTCCTGGGACCTGCAGGGACTCTCGCTCACACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR CCA 72 bp ACAACAGCAGTCGACAATAGTAGCTCCGAACAGCTATaGCCGGCCCCTCCCACCCGGTGTAACCGATGCACA +
Preference number: 3 (lower is better)
Translates to: TTAVDNSSSEQL*PAPPTRCNRCT
Trigger: TGTGCATCGGTTACACCGGGTGGGAGGGGCCGGCCATAGCTGTTCGGAGCTACTATTGTCGACTGCTGTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR-3UTR CAA 90 bp CACAGACTGTCATCCCAGGGCTCACACAGACTCGGGCACAGTAAGCACACACGCTCTGCTCCAGGAGCTTaGCTTCTACTGCGCCTTTCT +
Preference number: 3 (lower is better)
Translates to: HRLSSQGSHRLGHSKHTRSAPGA*LLLRLS
Trigger: AGAAAGGCGCAGTAGAAGCAAAGCTCCTGGAGCAGA...GCGTGTGTGCTTACTGTGCCCGAGTCTGTGTGAGCCCTGGGATGACAGTCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR GCA 72 bp ACTAGAACAGAAGTGAGCTGTGTGAGCGAGAGTCCCTaGAGGTCCCAGGAGGCTGCCTCTTTGTTCTGTGGA +
Preference number: 3 (lower is better)
Translates to: TRTEVSCVSESP*RSQEAASLFCG
Trigger: TCCACAGAACAAAGAGGCAGCCTCCTGGGACCTGCAGGGACTCTCGCTCACACAGCTCACTTCTGTTCTAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR GCA 72 bp ACGCAGCCCAGAAGGAAAACCTCCACATCTCACGTGTaGTGTACAACTGCAGCTCCATGGGACCTTTGTGAG +
Preference number: 3 (lower is better)
Translates to: TQPRRKTSTSHV*CTTAAPWDLCE
Trigger: CTCACAAAGGTCCCATGGAGCTGCAGTTGTACAGCACACGTGAGATGTGGAGGTTTTCCTTCTGGGCTGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR GCA 72 bp AAATGGAACACAACAGAACAGCACGTAAGAGCACAGTaGGGGGCTGCTGGAGCCACCTTTCAGAGCTTTCCC +
Preference number: 3 (lower is better)
Translates to: KWNTTEQHVRAQ*GAAGATFQSFP
Trigger: GGGAAAGCTCTGAAAGGTGGCTCCAGCAGCCCCGCACTGTGCTCTTACGTGCTGTTCTGTTGTGTTCCATTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR CCA 72 bp AGTTCCACGGCTTGCCGGTCTGAAGTAGTGTCTATGTaGTCAAGGCCTAGCTCTGCTCCAGGAGCTTTGCTT +
Preference number: 3 (lower is better)
Translates to: SSTACRSEVVSM*SRPSSAPGALL
Trigger: AAGCAAAGCTCCTGGAGCAGAGCTAGGCCTTGACCACATAGACACTACTTCAGACCGGCAAGCCGTGGAACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR TCA 72 bp CGTCACTCTGGGTACACGTCGAAACGGATCAGTTTCTaGAGACACTGCTTGCGTCCCTGGTTCCACCTTTTG +
Preference number: 3 (lower is better)
Translates to: RHSGYTSKRISF*RHCLRPWFHLL
Trigger: CAAAAGGTGGAACCAGGGACGCAAGCAGTGTCTTCAGAAACTGATCCGTTTCGACGTGTACCCAGAGTGACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR-3UTR CAA 90 bp AATGACCACCAGGCAAGAGCTCATCTACTGAAAGGCACACACTTCCATGTTAGTCAGGAGGCTGCCTCTTaGTTCTGTGGAGCCCCTTAC +
Preference number: 3 (lower is better)
Translates to: NDHQARAHLLKGTHFHVSQEAAS*FCGAPY
Trigger: GTAAGGGGCTCCACAGAACAAAGAGGCAGCCTCCTG...ACTAACATGGAAGTGTGTGCCTTTCAGTAGATGAGCTCTTGCCTGGTGGTCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR GCA 72 bp GAAACTGCACGGGACAAAGTTGTGTCACTAAGAAAGTaGGTGTGTTCGCGGGCATTCCGGTGGTGTGAGAAT +
Preference number: 3 (lower is better)
Translates to: ETARDKVVSLRK*VCSRAFRWCEN
Trigger: ATTCTCACACCACCGGAATGCCCGCGAACACACGCACTTTCTTAGTGACACAACTTTGTCCCGTGCAGTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR-3UTR CAA 90 bp CACACGCAGCCCAGAAGGAAAACCTCCACATCTCACGTGTGCTGTACAACTGCATGCAGAAGTGAAGTTTaGGCTGATAGATGTCCCAAG +
Preference number: 3 (lower is better)
Translates to: HTQPRRKTSTSHVCCTTACRSEV*ADRCPK
Trigger: CTTGGGACATCTATCAGCCAAAACTTCACTTCTGCA...TGCAGTTGTACAGCACACGTGAGATGTGGAGGTTTTCCTTCTGGGCTGCGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR TCA 72 bp GCTGTACAACTGCAGCTCCATGGGACCTTTGTGAGATaGAAACAGATTCCTGAGAGCCCATTTGGGGTTTCC +
Preference number: 3 (lower is better)
Translates to: AVQLQLHGTFVR*KQIPESPFGVS
Trigger: GGAAACCCCAAATGGGCTCTCAGGAATCTGTTTTCATCTCACAAAGGTCCCATGGAGCTGCAGTTGTACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR TCA 72 bp CTCTGCTCCAGGAGCTTTGCTTCTACTGCGCCTTTCTaGCATGCAGAAGTGAAGTTTTGGCTGATAGATGTC +
Preference number: 3 (lower is better)
Translates to: LCSRSFASTAPF*HAEVKFWLIDV
Trigger: GACATCTATCAGCCAAAACTTCACTTCTGCATGTCAGAAAGGCGCAGTAGAAGCAAAGCTCCTGGAGCAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR-3UTR CAA 90 bp ACATCTCACGTGTGCTGTACAACTGCAGCTCCATGGGACCTTTGTGAGATGAAATGCAGAAGTGAAGTTTaGGCTGATAGATGTCCCAAG +
Preference number: 3 (lower is better)
Translates to: TSHVCCTTAAPWDLCEMKCRSEV*ADRCPK
Trigger: CTTGGGACATCTATCAGCCAAAACTTCACTTCTGCA...TTTCATCTCACAAAGGTCCCATGGAGCTGCAGTTGTACAGCACACGTGAGATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR GCA 72 bp ACACGTCGAAACGGATCAGTTTCTGAAGACACTGCTTaGGTCCCTGGTTCCACCTTTTGGATAAACTTGCTA +
Preference number: 3 (lower is better)
Translates to: TRRNGSVSEDTA*VPGSTFWINLL
Trigger: TAGCAAGTTTATCCAAAAGGTGGAACCAGGGACGCAAGCAGTGTCTTCAGAAACTGATCCGTTTCGACGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR CCA 72 bp AAGCAGGAAAACCTAATTAAACCAAGCATCCATTCCTaGGTCAACTTCGTCTCCAAGCTGTGCCCATCGATC +
Preference number: 3 (lower is better)
Translates to: KQENLIKPSIHS*VNFVSKLCPSI
Trigger: GATCGATGGGCACAGCTTGGAGACGAAGTTGACCCAGGAATGGATGCTTGGTTTAATTAGGTTTTCCTGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR CCA 72 bp GACCCCACCACTGATGCCAAATTTCACAACATAAATTaGTTCAGAAGGGTGCGAAGTGGGGAGGAGAAATCA +
Preference number: 3 (lower is better)
Translates to: DPTTDAKFHNIN*FRRVRSGEEKS
Trigger: TGATTTCTCCTCCCCACTTCGCACCCTTCTGAACCAATTTATGTTGTGAAATTTGGCATCAGTGGTGGGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR CCA 72 bp GAGACTATACTGAGGGAGGGACAACTCAGCAACTCCTaGGATTCTGTTGTTCGCCAAGTTCTATACTTAAAC +
Preference number: 3 (lower is better)
Translates to: ETILREGQLSNS*DSVVRQVLYLN
Trigger: GTTTAAGTATAGAACTTGGCGAACAACAGAATCCCAGGAGTTGCTGAGTTGTCCCTCCCTCAGTATAGTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR TCA 72 bp AAGGCACACACTTCCATGTTAGTCATCTATGTGAACTaGCCTTGGCACACTACTGGCATCGTGTCCTATAAA +
Preference number: 3 (lower is better)
Translates to: KAHTSMLVIYVN*PWHTTGIVSYK
Trigger: TTTATAGGACACGATGCCAGTAGTGTGCCAAGGTCAGTTCACATAGATGACTAACATGGAAGTGTGTGCCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR-3UTR CAA 90 bp GCTTTACATGCTAATTACCAATGGCAGGTTCCTGTATTTAAAATCGACAGTTACTCTGCTCCAGGAGCTTaGCTTCTACTGCGCCTTTCT +
Preference number: 3 (lower is better)
Translates to: ALHANYQWQVPVFKIDSYSAPGA*LLLRLS
Trigger: AGAAAGGCGCAGTAGAAGCAAAGCTCCTGGAGCAGA...GTAACTGTCGATTTTAAATACAGGAACCTGCCATTGGTAATTAGCATGTAAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR TCA 72 bp TACGTAGATGTTCAGACAGCAGGGAAGCGAGAGGTATaGGTACTGAGGAGAGTGACAAGTAAAAATGTGTTT +
Preference number: 3 (lower is better)
Translates to: YVDVQTAGKREV*VLRRVTSKNVF
Trigger: AAACACATTTTTACTTGTCACTCTCCTCAGTACTCATACCTCTCGCTTCCCTGCTGTCTGAACATCTACGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR TCA 72 bp AGAATACAAATGACCACCAGGCAAGAGCTCATCTACTaGAAGGCACACACTTCCATGTTAGTCATCTATGTG +
Preference number: 3 (lower is better)
Translates to: RIQMTTRQELIY*KAHTSMLVIYV
Trigger: CACATAGATGACTAACATGGAAGTGTGTGCCTTTCAGTAGATGAGCTCTTGCCTGGTGGTCATTTGTATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR CCA 72 bp ATCATGCACCAAAGGAAGATAACAGAAGGGCAAAGGTaGGCTTCCAGGAGGAAGAATATAAACCAGAATAAT +
Preference number: 3 (lower is better)
Translates to: IMHQRKITEGQR*ASRRKNINQNN
Trigger: ATTATTCTGGTTTATATTCTTCCTCCTGGAAGCCCACCTTTGCCCTTCTGTTATCTTCCTTTGGTGCATGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR-3UTR CAA 90 bp TTTTACTCAGTTGTCCATATACCAATGTCGCTGACTAGTAAGCAAAGCAAGCAAACCCAAGTCTTTAAGTaGCATTTAACAAGCAGGAAA +
Preference number: 3 (lower is better)
Translates to: FYSVVHIPMSLTSKQSKQTQVFK*HLTSRK
Trigger: TTTCCTGCTTGTTAAATGCAACTTAAAGACTTGGGT...TTGCTTGCTTTGCTTACTAGTCAGCGACATTGGTATATGGACAACTGAGTAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR GCA 72 bp TTTACATTTAGTTGGTGTGAATTTACCCATCCTAAATaGTTCTGTGCCTGGAATACAACTTTTGAAAGCGCT +
Preference number: 3 (lower is better)
Translates to: FTFSWCEFTHPK*FCAWNTTFESA
Trigger: AGCGCTTTCAAAAGTTGTATTCCAGGCACAGAAGCATTTAGGATGGGTAAATTCACACCAACTAAATGTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
CDS-3UTR GCA 90 bp CACACAGACTCGGGCACAGTAAGCACACACGCAGCCCAGAAGGAAAACCTCCACGGCTGGGCCTGTGGCTaGTGCTGTCCGGCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: HTDSGTVSTHAAQKENLHGWACG*CCPAAG
Trigger: GCCTGCAGCCGGACAGCAGCAGCCACAGGCCCAGCC...GTGGAGGTTTTCCTTCTGGGCTGCGTGTGTGCTTACTGTGCCCGAGTCTGTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CCA 90 bp CACACAGACTCGGGCACAGTAAGCACACACGCAGCCCAGAAGGAAAACCTCCACGGCAGGCTGGGCCTGTaGCTGCTGCTGTCCGGCTGC +
Preference number: 4 (lower is better)
Translates to: HTDSGTVSTHAAQKENLHGRLGL*LLLSGC
Trigger: GCAGCCGGACAGCAGCAGCCACAGGCCCAGCCTGCC...GTGGAGGTTTTCCTTCTGGGCTGCGTGTGTGCTTACTGTGCCCGAGTCTGTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR GCA 90 bp CACACGCAGCCCAGAAGGAAAACCTCCACATCTCACGTGTGCTGTACAACTGCAGGCTGGGCCTGTGGCTaGTGCTGTCCGGCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: HTQPRRKTSTSHVCCTTAGWACG*CCPAAG
Trigger: GCCTGCAGCCGGACAGCAGCAGCCACAGGCCCAGCC...TGCAGTTGTACAGCACACGTGAGATGTGGAGGTTTTCCTTCTGGGCTGCGTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR GCA 90 bp CACACAGACTCGGGCACAGTAAGCACACACGCAGCCCAGAAGGAAAACCTCCACAGCACCAACGGAGCTTaGTGTTGGGCAGGCTGGGCC +
Preference number: 4 (lower is better)
Translates to: HTDSGTVSTHAAQKENLHSTNGA*CWAGWA
Trigger: GGCCCAGCCTGCCCAACAGCAAGCTCCGTTGGTGCT...GTGGAGGTTTTCCTTCTGGGCTGCGTGTGTGCTTACTGTGCCCGAGTCTGTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR GCA 90 bp CACAGACTGTCATCCCAGGGCTCACACAGACTCGGGCACAGTAAGCACACACGCCACTCCTGCAGGCAGTaGCAAGGTAGCAGCTGTAGC +
Preference number: 4 (lower is better)
Translates to: HRLSSQGSHRLGHSKHTRHSCRQ*QGSSCS
Trigger: GCTACAGCTGCTACCTTGGCACTGCCTGCAGGAGTG...GCGTGTGTGCTTACTGTGCCCGAGTCTGTGTGAGCCCTGGGATGACAGTCTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR GCA 90 bp CACACAGACTCGGGCACAGTAAGCACACACGCAGCCCAGAAGGAAAACCTCCACCTGGGCACCATTGGCTaGTCTGACCACCTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: HTDSGTVSTHAAQKENLHLGTIG*SDHLKQ
Trigger: CTGCTTCAGGTGGTCAGAGCAGCCAATGGTGCCCAG...GTGGAGGTTTTCCTTCTGGGCTGCGTGTGTGCTTACTGTGCCCGAGTCTGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR GCA 90 bp CACACGCAGCCCAGAAGGAAAACCTCCACATCTCACGTGTGCTGTACAACTGCAAGCACCAACGGAGCTTaGTGTTGGGCAGGCTGGGCC +
Preference number: 4 (lower is better)
Translates to: HTQPRRKTSTSHVCCTTASTNGA*CWAGWA
Trigger: GGCCCAGCCTGCCCAACAGCAAGCTCCGTTGGTGCT...TGCAGTTGTACAGCACACGTGAGATGTGGAGGTTTTCCTTCTGGGCTGCGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR GCA 90 bp CAACAGCAGTCGACAATAGTAGCTCCGAACAGCTATGGCCGGCCCCTCCCACCCGGCTCTTCTTCCACCTaGCCATCTTCAGCTCCATCT +
Preference number: 4 (lower is better)
Translates to: QQQSTIVAPNSYGRPLPPGSSST*PSSAPS
Trigger: AGATGGAGCTGAAGATGGGCAGGTGGAAGAAGAGCC...GGGTGGGAGGGGCCGGCCATAGCTGTTCGGAGCTACTATTGTCGACTGCTGTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
CDS-3UTR TCA 90 bp TGCAGGTCCCAGGAGGCTGCCTCTTTGTTCTGTGGAGCCCCTTACAGGAACAGAGCTGCTCTGACCACCTaGAGCAGCTGGCCTGAATTT +
Preference number: 4 (lower is better)
Translates to: CRSQEAASLFCGAPYRNRAALTT*SSWPEF
Trigger: AAATTCAGGCCAGCTGCTTCAGGTGGTCAGAGCAGC...TCTGTTCCTGTAAGGGGCTCCACAGAACAAAGAGGCAGCCTCCTGGGACCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
CDS-3UTR GCA 90 bp CACAGACTGTCATCCCAGGGCTCACACAGACTCGGGCACAGTAAGCACACACGCGTGTCAAAGAGTTCCTaGCCTTCCTCGTCACTGACG +
Preference number: 4 (lower is better)
Translates to: HRLSSQGSHRLGHSKHTRVSKSS*PSSSLT
Trigger: CGTCAGTGACGAGGAAGGGCAGGAACTCTTTGACAC...GCGTGTGTGCTTACTGTGCCCGAGTCTGTGTGAGCCCTGGGATGACAGTCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR GCA 90 bp CACACAGACTCGGGCACAGTAAGCACACACGCAGCCCAGAAGGAAAACCTCCACTGTGGTGCTGTAGCTTaGTGGGATGCAGGAATGAGG +
Preference number: 4 (lower is better)
Translates to: HTDSGTVSTHAAQKENLHCGAVA*WDAGMR
Trigger: CCTCATTCCTGCATCCCAGCAAGCTACAGCACCACA...GTGGAGGTTTTCCTTCTGGGCTGCGTGTGTGCTTACTGTGCCCGAGTCTGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR GCA 90 bp CACACAGACTCGGGCACAGTAAGCACACACGCAGCCCAGAAGGAAAACCTCCACAGTGGGGCTAAGACCTaGTGGATAACAGGAGCTTGG +
Preference number: 4 (lower is better)
Translates to: HTDSGTVSTHAAQKENLHSGAKT*WITGAW
Trigger: CCAAGCTCCTGTTATCCAGCAGGTCTTAGCCCCACT...GTGGAGGTTTTCCTTCTGGGCTGCGTGTGTGCTTACTGTGCCCGAGTCTGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR GCA 90 bp CACACAGACTCGGGCACAGTAAGCACACACGCAGCCCAGAAGGAAAACCTCCACGTGTCAAAGAGTTCCTaGCCTTCCTCGTCACTGACG +
Preference number: 4 (lower is better)
Translates to: HTDSGTVSTHAAQKENLHVSKSS*PSSSLT
Trigger: CGTCAGTGACGAGGAAGGGCAGGAACTCTTTGACAC...GTGGAGGTTTTCCTTCTGGGCTGCGTGTGTGCTTACTGTGCCCGAGTCTGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CCA 90 bp GCAAGAGCTCATCTACTGAAAGGCACACACTTCCATGTTAGTCATCTATGTGAAGGCAGGCTGGGCCTGTaGCTGCTGCTGTCCGGCTGC +
Preference number: 4 (lower is better)
Translates to: ARAHLLKGTHFHVSHLCEGRLGL*LLLSGC
Trigger: GCAGCCGGACAGCAGCAGCCACAGGCCCAGCCTGCC...TTCACATAGATGACTAACATGGAAGTGTGTGCCTTTCAGTAGATGAGCTCTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
CDS-3UTR TCA 90 bp ACATCTCACGTGTGCTGTACAACTGCAGCTCCATGGGACCTTTGTGAGATGAAACGTCATCCTCGCTGTTaGGCGGCTCTTCTTCCACCT +
Preference number: 4 (lower is better)
Translates to: TSHVCCTTAAPWDLCEMKRHPRC*AALLPP
Trigger: AGGTGGAAGAAGAGCCGCTCAACAGCGAGGATGACG...TTTCATCTCACAAAGGTCCCATGGAGCTGCAGTTGTACAGCACACGTGAGATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CCA 90 bp TGCAGGTCCCAGGAGGCTGCCTCTTTGTTCTGTGGAGCCCCTTACAGGAACAGAAGGAACAATAACTTGTaGTGCTGTAGCTTGCTGGGA +
Preference number: 4 (lower is better)
Translates to: CRSQEAASLFCGAPYRNRRNNNL*CCSLLG
Trigger: TCCCAGCAAGCTACAGCACCACAAGTTATTGTTCCT...TCTGTTCCTGTAAGGGGCTCCACAGAACAAAGAGGCAGCCTCCTGGGACCTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
CDS-3UTR TCA 90 bp CACACAGACTCGGGCACAGTAAGCACACACGCAGCCCAGAAGGAAAACCTCCACAAGCTGCTGTTCTTCTaGATGAAATCCATCTACTGC +
Preference number: 4 (lower is better)
Translates to: HTDSGTVSTHAAQKENLHKLLFF*MKSIYC
Trigger: GCAGTAGATGGATTTCATTCAGAAGAACAGCAGCTT...GTGGAGGTTTTCCTTCTGGGCTGCGTGTGTGCTTACTGTGCCCGAGTCTGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR TCA 90 bp AATGACCACCAGGCAAGAGCTCATCTACTGAAAGGCACACACTTCCATGTTAGTGACGCCTGTCTGTGGTaGAATCCCTCCAGGAAGTGG +
Preference number: 4 (lower is better)
Translates to: NDHQARAHLLKGTHFHVSDACLW*NPSRKW
Trigger: CCACTTCCTGGAGGGATTTCACCACAGACAGGCGTC...ACTAACATGGAAGTGTGTGCCTTTCAGTAGATGAGCTCTTGCCTGGTGGTCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
CDS-3UTR GCA 90 bp CACACAGACTCGGGCACAGTAAGCACACACGCAGCCCAGAAGGAAAACCTCCACCCTGTAAATAAGATTTaGTGTGGCTGGATGATGACG +
Preference number: 4 (lower is better)
Translates to: HTDSGTVSTHAAQKENLHPVNKI*CGWMMT
Trigger: CGTCATCATCCAGCCACAGCAAATCTTATTTACAGG...GTGGAGGTTTTCCTTCTGGGCTGCGTGTGTGCTTACTGTGCCCGAGTCTGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR GCA 90 bp ACATCTCACGTGTGCTGTACAACTGCAGCTCCATGGGACCTTTGTGAGATGAAATGTAGCTTGCTGGGATaGAGGAATGAGGACCTGCTG +
Preference number: 4 (lower is better)
Translates to: TSHVCCTTAAPWDLCEMKCSLLG*RNEDLL
Trigger: CAGCAGGTCCTCATTCCTGCATCCCAGCAAGCTACA...TTTCATCTCACAAAGGTCCCATGGAGCTGCAGTTGTACAGCACACGTGAGATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR GCA 90 bp CCAGGAGGCTGCCTCTTTGTTCTGTGGAGCCCCTTACAGGAACAGAGCTACACACCTGTAAATAAGATTTaGTGTGGCTGGATGATGACG +
Preference number: 4 (lower is better)
Translates to: PGGCLFVLWSPLQEQSYTPVNKI*CGWMMT
Trigger: CGTCATCATCCAGCCACAGCAAATCTTATTTACAGG...TGTGTAGCTCTGTTCCTGTAAGGGGCTCCACAGAACAAAGAGGCAGCCTCCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
CDS-3UTR GCA 90 bp TGTTTAATAAAAATCCAGTCCTCATCCGTTGCCCTTATGCTTAGACCAACGCACCTGGGCACCATTGGCTaGTCTGACCACCTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: CLIKIQSSSVALMLRPTHLGTIG*SDHLKQ
Trigger: CTGCTTCAGGTGGTCAGAGCAGCCAATGGTGCCCAG...GTGCGTTGGTCTAAGCATAAGGGCAACGGATGAGGACTGGATTTTTATTAAACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CCA 90 bp CACACAGACTCGGGCACAGTAAGCACACACGCAGCCCAGAAGGAAAACCTCCACTGTATCTTATCATACTaGCAGACGACAACATTCTCA +
Preference number: 4 (lower is better)
Translates to: HTDSGTVSTHAAQKENLHCILSY*QTTTFS
Trigger: TGAGAATGTTGTCGTCTGCCAGTATGATAAGATACA...GTGGAGGTTTTCCTTCTGGGCTGCGTGTGTGCTTACTGTGCCCGAGTCTGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR GCA 90 bp TGTTTAATAAAAATCCAGTCCTCATCCGTTGCCCTTATGCTTAGACCAACGCACGACCTGCTGGGTCTGTaGTTGCTGAGGTACCGTTTG +
Preference number: 4 (lower is better)
Translates to: CLIKIQSSSVALMLRPTHDLLGL*LLRYRL
Trigger: CAAACGGTACCTCAGCAAGCACAGACCCAGCAGGTC...GTGCGTTGGTCTAAGCATAAGGGCAACGGATGAGGACTGGATTTTTATTAAACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR TCA 90 bp GTTTCCTCTTATAGAGTGGGACTGAGCAGTTTTTCTGTACAGAAATTAAGCTGTCGTCATCCTCGCTGTTaGGCGGCTCTTCTTCCACCT +
Preference number: 4 (lower is better)
Translates to: VSSYRVGLSSFSVQKLSCRHPRC*AALLPP
Trigger: AGGTGGAAGAAGAGCCGCTCAACAGCGAGGATGACG...ACAGCTTAATTTCTGTACAGAAAAACTGCTCAGTCCCACTCTATAAGAGGAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR GCA 90 bp TGTTTAATAAAAATCCAGTCCTCATCCGTTGCCCTTATGCTTAGACCAACGCACGGCTCTTCTTCCACCTaGCCATCTTCAGCTCCATCT +
Preference number: 4 (lower is better)
Translates to: CLIKIQSSSVALMLRPTHGSSST*PSSAPS
Trigger: AGATGGAGCTGAAGATGGGCAGGTGGAAGAAGAGCC...GTGCGTTGGTCTAAGCATAAGGGCAACGGATGAGGACTGGATTTTTATTAAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR TCA 90 bp AGTTCAGTCTATCAAAAGGGTAATTCTTCGGGTCATTCCAACAAATATCTTCTGGACGCCTGTCTGTGGTaGAATCCCTCCAGGAAGTGG +
Preference number: 4 (lower is better)
Translates to: SSVYQKGNSSGHSNKYLLDACLW*NPSRKW
Trigger: CCACTTCCTGGAGGGATTTCACCACAGACAGGCGTC...CAGAAGATATTTGTTGGAATGACCCGAAGAATTACCCTTTTGATAGACTGAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR GCA 90 bp AGTTCAGTCTATCAAAAGGGTAATTCTTCGGGTCATTCCAACAAATATCTTCTGGACCTGCTGGGTCTGTaGTTGCTGAGGTACCGTTTG +
Preference number: 4 (lower is better)
Translates to: SSVYQKGNSSGHSNKYLLDLLGL*LLRYRL
Trigger: CAAACGGTACCTCAGCAAGCACAGACCCAGCAGGTC...CAGAAGATATTTGTTGGAATGACCCGAAGAATTACCCTTTTGATAGACTGAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CCA 90 bp TTTTACTCAGTTGTCCATATACCAATGTCGCTGACTAGTAAGCAAAGCAAGCAAGGCTGCAAGATATACTaGGCACCATTGGCTGCTCTG +
Preference number: 4 (lower is better)
Translates to: FYSVVHIPMSLTSKQSKQGCKIY*APLAAL
Trigger: CAGAGCAGCCAATGGTGCCCAGTATATCTTGCAGCC...TTGCTTGCTTTGCTTACTAGTCAGCGACATTGGTATATGGACAACTGAGTAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
CDS-3UTR CCA 90 bp TTTTACTCAGTTGTCCATATACCAATGTCGCTGACTAGTAAGCAAAGCAAGCAAGGGGCTAAGACCTGCTaGATAACAGGAGCTTGGACT +
Preference number: 4 (lower is better)
Translates to: FYSVVHIPMSLTSKQSKQGAKTC*ITGAWT
Trigger: AGTCCAAGCTCCTGTTATCCAGCAGGTCTTAGCCCC...TTGCTTGCTTTGCTTACTAGTCAGCGACATTGGTATATGGACAACTGAGTAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
CDS-3UTR TCA 90 bp TATTCAATGGTGGTTTGTTCTCCCCGCAAACGGGAGGAAACTTTTATTCTTCAATTTGTTAGTAGCTGTTaGACCGGAGTCACTCCTGCA +
Preference number: 4 (lower is better)
Translates to: YSMVVCSPRKREETFILQFVSSC*TGVTPA
Trigger: TGCAGGAGTGACTCCGGTTCAACAGCTACTAACAAA...TTGAAGAATAAAAGTTTCCTCCCGTTTGCGGGGAGAACAAACCACCATTGAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
CDS-3UTR GCA 90 bp GTGAAGTTTTGGCTGATAGATGTCCCAAGTTTCAAACCGTCCATTTTAACTTTTTGTGGTGCTGTAGCTTaGTGGGATGCAGGAATGAGG +
Preference number: 4 (lower is better)
Translates to: VKFWLIDVPSFKPSILTFCGAVA*WDAGMR
Trigger: CCTCATTCCTGCATCCCAGCAAGCTACAGCACCACA...AAAAGTTAAAATGGACGGTTTGAAACTTGGGACATCTATCAGCCAAAACTTCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR GCA 90 bp GTGAAGTTTTGGCTGATAGATGTCCCAAGTTTCAAACCGTCCATTTTAACTTTTAGTGGGGCTAAGACCTaGTGGATAACAGGAGCTTGG +
Preference number: 4 (lower is better)
Translates to: VKFWLIDVPSFKPSILTFSGAKT*WITGAW
Trigger: CCAAGCTCCTGTTATCCAGCAGGTCTTAGCCCCACT...AAAAGTTAAAATGGACGGTTTGAAACTTGGGACATCTATCAGCCAAAACTTCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CCA 90 bp AGTTCAGTCTATCAAAAGGGTAATTCTTCGGGTCATTCCAACAAATATCTTCTGGGCTGCAAGATATACTaGGCACCATTGGCTGCTCTG +
Preference number: 4 (lower is better)
Translates to: SSVYQKGNSSGHSNKYLLGCKIY*APLAAL
Trigger: CAGAGCAGCCAATGGTGCCCAGTATATCTTGCAGCC...CAGAAGATATTTGTTGGAATGACCCGAAGAATTACCCTTTTGATAGACTGAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
3UTR CAA 72 bp ATAAATGGTCAGTTCCTGCTTCAAGACAAGCCCCCTTaGTGTCACTCTGAAAGAAGTGGTTGTTCATGTTTG +
Preference number: 4 (lower is better)
Translates to: INGQFLLQDKPP*CHSERSGCSCL
Trigger: CAAACATGAACAACCACTTCTTTCAGAGTGACACAAAGGGGGCTTGTCTTGAAGCAGGAACTGACCATTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR CAA 72 bp ACAAACGCCTCATATAAATATCCCCTCCTATCCTGTTaGACTCTAGAAACTGCACGGGACAAAGTTGTGTCA +
Preference number: 4 (lower is better)
Translates to: TNASYKYPLLSC*TLETARDKVVS
Trigger: TGACACAACTTTGTCCCGTGCAGTTTCTAGAGTCAAACAGGATAGGAGGGGATATTTATATGAGGCGTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
3UTR CAA 72 bp AAGTCAAATCTCTGTATTTTCTTTCCAATGTGCAAATaGGAGCCCAAGTCTACATCACCAATGGCCTGGAAG +
Preference number: 4 (lower is better)
Translates to: KSNLCIFFPMCK*EPKSTSPMAWK
Trigger: CTTCCAGGCCATTGGTGATGTAGACTTGGGCTCCAATTTGCACATTGGAAAGAAAATACAGAGATTTGACTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
CDS-3UTR TCA 90 bp AGTTCAGTCTATCAAAAGGGTAATTCTTCGGGTCATTCCAACAAATATCTTCTGTTTGTTAGTAGCTGTTaGACCGGAGTCACTCCTGCA +
Preference number: 4 (lower is better)
Translates to: SSVYQKGNSSGHSNKYLLFVSSC*TGVTPA
Trigger: TGCAGGAGTGACTCCGGTTCAACAGCTACTAACAAA...CAGAAGATATTTGTTGGAATGACCCGAAGAATTACCCTTTTGATAGACTGAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR GCA 90 bp TATTCAATGGTGGTTTGTTCTCCCCGCAAACGGGAGGAAACTTTTATTCTTCAATCTACTGCCCTAGACTaGATTAGTTTATTCTCCCAC +
Preference number: 4 (lower is better)
Translates to: YSMVVCSPRKREETFILQSTALD*ISLFSH
Trigger: GTGGGAGAATAAACTAATGCAGTCTAGGGCAGTAGA...TTGAAGAATAAAAGTTTCCTCCCGTTTGCGGGGAGAACAAACCACCATTGAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
CDS-3UTR CCA 90 bp GCTTTACATGCTAATTACCAATGGCAGGTTCCTGTATTTAAAATCGACAGTTACAAGATTTGCTGTGGCTaGATGATGACGCCTGTCTGT +
Preference number: 4 (lower is better)
Translates to: ALHANYQWQVPVFKIDSYKICCG*MMTPVC
Trigger: ACAGACAGGCGTCATCATCCAGCCACAGCAAATCTT...GTAACTGTCGATTTTAAATACAGGAACCTGCCATTGGTAATTAGCATGTAAAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CCA 90 bp GTGAAGTTTTGGCTGATAGATGTCCCAAGTTTCAAACCGTCCATTTTAACTTTTAAGATTTGCTGTGGCTaGATGATGACGCCTGTCTGT +
Preference number: 4 (lower is better)
Translates to: VKFWLIDVPSFKPSILTFKICCG*MMTPVC
Trigger: ACAGACAGGCGTCATCATCCAGCCACAGCAAATCTT...AAAAGTTAAAATGGACGGTTTGAAACTTGGGACATCTATCAGCCAAAACTTCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR TCA 90 bp TGTTTAATAAAAATCCAGTCCTCATCCGTTGCCCTTATGCTTAGACCAACGCACGTTGTAGGAATGACCTaGGTCTTATTTCCTGTAAAT +
Preference number: 4 (lower is better)
Translates to: CLIKIQSSSVALMLRPTHVVGMT*VLFPVN
Trigger: ATTTACAGGAAATAAGACTCAGGTCATTCCTACAAC...GTGCGTTGGTCTAAGCATAAGGGCAACGGATGAGGACTGGATTTTTATTAAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CCA 90 bp GCTTTACATGCTAATTACCAATGGCAGGTTCCTGTATTTAAAATCGACAGTTACAGGAACAATAACTTGTaGTGCTGTAGCTTGCTGGGA +
Preference number: 4 (lower is better)
Translates to: ALHANYQWQVPVFKIDSYRNNNL*CCSLLG
Trigger: TCCCAGCAAGCTACAGCACCACAAGTTATTGTTCCT...GTAACTGTCGATTTTAAATACAGGAACCTGCCATTGGTAATTAGCATGTAAAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR TCA 90 bp TCTTATAGAGTGGGACTGAGCAGTTTTTCTGTACAGAAATTAAGCTGTCACTTTAAGCTGCTGTTCTTCTaGATGAAATCCATCTACTGC +
Preference number: 4 (lower is better)
Translates to: SYRVGLSSFSVQKLSCHFKLLFF*MKSIYC
Trigger: GCAGTAGATGGATTTCATTCAGAAGAACAGCAGCTT...AAAGTGACAGCTTAATTTCTGTACAGAAAAACTGCTCAGTCCCACTCTATAAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR GCA 90 bp GCTTTACATGCTAATTACCAATGGCAGGTTCCTGTATTTAAAATCGACAGTTACTCTACTGCCCTAGACTaGATTAGTTTATTCTCCCAC +
Preference number: 4 (lower is better)
Translates to: ALHANYQWQVPVFKIDSYSTALD*ISLFSH
Trigger: GTGGGAGAATAAACTAATGCAGTCTAGGGCAGTAGA...GTAACTGTCGATTTTAAATACAGGAACCTGCCATTGGTAATTAGCATGTAAAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CCA 90 bp GTTTCCTCTTATAGAGTGGGACTGAGCAGTTTTTCTGTACAGAAATTAAGCTGTTGTATCTTATCATACTaGCAGACGACAACATTCTCA +
Preference number: 4 (lower is better)
Translates to: VSSYRVGLSSFSVQKLSCCILSY*QTTTFS
Trigger: TGAGAATGTTGTCGTCTGCCAGTATGATAAGATACA...ACAGCTTAATTTCTGTACAGAAAAACTGCTCAGTCCCACTCTATAAGAGGAAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR TCA 90 bp GTGAAGTTTTGGCTGATAGATGTCCCAAGTTTCAAACCGTCCATTTTAACTTTTGTTGTAGGAATGACCTaGGTCTTATTTCCTGTAAAT +
Preference number: 4 (lower is better)
Translates to: VKFWLIDVPSFKPSILTFVVGMT*VLFPVN
Trigger: ATTTACAGGAAATAAGACTCAGGTCATTCCTACAAC...AAAAGTTAAAATGGACGGTTTGAAACTTGGGACATCTATCAGCCAAAACTTCAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS GCA 90 bp TGCAGCACCAACGGAGCTTGCTGTTGGGCAGGCTGGGCCTGTGGCTaGTGCTGTCCGGCTGCAGGCATCGGCGCTTGTGCCGGGGCGGGT +
Preference number: 5 (lower is better)
Translates to: CSTNGACCWAGWACG*CCPAAGIGACAGAG
Trigger: ACCCGCCCCGGCACAAGCGCCGATGCCTGCAGCCGGACAGCAGCAGCCACAGGCCCAGCCTGCCCAACAGCAAGCTCCGTTGGTGCTGCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CAA 90 bp CAACAGCAGTCGACAATAGTAGCTCCGAACAGCTATGGCCGGCCCCTCCCACCCTTGCTGAGGTTGCGCTaGCTGGTGCTGGTGGTGGTG +
Preference number: 5 (lower is better)
Translates to: QQQSTIVAPNSYGRPLPPLLRLR*LVLVVV
Trigger: CACCACCACCAGCACCAGCAAGCGCAACCTCAGCAA...GGGTGGGAGGGGCCGGCCATAGCTGTTCGGAGCTACTATTGTCGACTGCTGTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
CDS-3UTR CAA 90 bp CACAGACTGTCATCCCAGGGCTCACACAGACTCGGGCACAGTAAGCACACACGCTTGCTGAGGTTGCGCTaGCTGGTGCTGGTGGTGGTG +
Preference number: 5 (lower is better)
Translates to: HRLSSQGSHRLGHSKHTRLLRLR*LVLVVV
Trigger: CACCACCACCAGCACCAGCAAGCGCAACCTCAGCAA...GCGTGTGTGCTTACTGTGCCCGAGTCTGTGTGAGCCCTGGGATGACAGTCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CAA 90 bp CAACAGCAGTCGACAATAGTAGCTCCGAACAGCTATGGCCGGCCCCTCCCACCCTACCGTTTGCTGAGGTaGCGCTTGCTGGTGCTGGTG +
Preference number: 5 (lower is better)
Translates to: QQQSTIVAPNSYGRPLPPYRLLR*RLLVLV
Trigger: CACCAGCACCAGCAAGCGCAACCTCAGCAAACGGTA...GGGTGGGAGGGGCCGGCCATAGCTGTTCGGAGCTACTATTGTCGACTGCTGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
CDS GCA 90 bp TGCTGTAGCTTGCTGGGATGCAGGAATGAGGACCTGCTGGGTCTGTaGTTGCTGAGGTACCGTTTGCTGAGGTTGCGCTTGCTGGTGCTG +
Preference number: 5 (lower is better)
Translates to: CCSLLGCRNEDLLGL*LLRYRLLRLRLLVL
Trigger: CAGCACCAGCAAGCGCAACCTCAGCAAACGGTACCTCAGCAAGCACAGACCCAGCAGGTCCTCATTCCTGCATCCCAGCAAGCTACAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CAA 90 bp TGCAGGTCCCAGGAGGCTGCCTCTTTGTTCTGTGGAGCCCCTTACAGGAACAGACTGCTGGGTCTGTGCTaGCTGAGGTACCGTTTGCTG +
Preference number: 5 (lower is better)
Translates to: CRSQEAASLFCGAPYRNRLLGLC*LRYRLL
Trigger: CAGCAAACGGTACCTCAGCAAGCACAGACCCAGCAG...TCTGTTCCTGTAAGGGGCTCCACAGAACAAAGAGGCAGCCTCCTGGGACCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
CDS GCA 90 bp TCATCTTCATCTTCCTCAGAAGATGTATCCCCTGTTCCATCAACTTaGAGCACCAACGGAGCTTGCTGTTGGGCAGGCTGGGCCTGTGGC +
Preference number: 5 (lower is better)
Translates to: SSSSSSEDVSPVPST*STNGACCWAGWACG
Trigger: GCCACAGGCCCAGCCTGCCCAACAGCAAGCTCCGTTGGTGCTGCAAGTTGATGGAACAGGGGATACATCTTCTGAGGAAGATGAAGATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS TCA 90 bp GGCGCTTGTGCCGGGGCGGGTGCTGCCACTGTTGTAGGAATGACCTaGGTCTTATTTCCTGTAAATAAGATTTGCTGTGGCTGGATGATG +
Preference number: 5 (lower is better)
Translates to: GACAGAGAATVVGMT*VLFPVNKICCGWMM
Trigger: CATCATCCAGCCACAGCAAATCTTATTTACAGGAAATAAGACTCAGGTCATTCCTACAACAGTGGCAGCACCCGCCCCGGCACAAGCGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CAA 90 bp TGCAGGTCCCAGGAGGCTGCCTCTTTGTTCTGTGGAGCCCCTTACAGGAACAGAATCAGGAACAATAACTaGTGGTGCTGTAGCTTGCTG +
Preference number: 5 (lower is better)
Translates to: CRSQEAASLFCGAPYRNRIRNNN*WCCSLL
Trigger: CAGCAAGCTACAGCACCACAAGTTATTGTTCCTGAT...TCTGTTCCTGTAAGGGGCTCCACAGAACAAAGAGGCAGCCTCCTGGGACCTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
CDS TCA 90 bp CTGACTGCTGAGGCTGCAAGATATACTGGGCACCATTGGCTGCTCTaGCCACCTGAAGCAGCTGGCCTGAATTTGTTAGTAGCTGTTGAA +
Preference number: 5 (lower is better)
Translates to: LTAEAARYTGHHWLL*PPEAAGLNLLVAVE
Trigger: TTCAACAGCTACTAACAAATTCAGGCCAGCTGCTTCAGGTGGTCAGAGCAGCCAATGGTGCCCAGTATATCTTGCAGCCTCAGCAGTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CAA 90 bp AAGGGTAATTCTTCGGGTCATTCCAACAAATATCTTCTGATTGAGCCCAACTTGCAACGGAGCTTGCTGTaGGGCAGGCTGGGCCTGTGG +
Preference number: 5 (lower is better)
Translates to: KGNSSGHSNKYLLIEPNLQRSLL*GRLGLW
Trigger: CCACAGGCCCAGCCTGCCCAACAGCAAGCTCCGTTG...CAAGTTGGGCTCAATCAGAAGATATTTGTTGGAATGACCCGAAGAATTACCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CAA 90 bp CACACGCAGCCCAGAAGGAAAACCTCCACATCTCACGTGTGCTGTACAACTGCATCCACCAGGCTGCATTaGTGGTATAACTTGTTGTTG +
Preference number: 5 (lower is better)
Translates to: HTQPRRKTSTSHVCCTTASTRLH*WYNLLL
Trigger: CAACAACAAGTTATACCACAAATGCAGCCTGGTGGA...TGCAGTTGTACAGCACACGTGAGATGTGGAGGTTTTCCTTCTGGGCTGCGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CAA 90 bp AGTTCAGTCTATCAAAAGGGTAATTCTTCGGGTCATTCCAACAAATATCTTCTGCAACGGAGCTTGCTGTaGGGCAGGCTGGGCCTGTGG +
Preference number: 5 (lower is better)
Translates to: SSVYQKGNSSGHSNKYLLQRSLL*GRLGLW
Trigger: CCACAGGCCCAGCCTGCCCAACAGCAAGCTCCGTTG...CAGAAGATATTTGTTGGAATGACCCGAAGAATTACCCTTTTGATAGACTGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CAA 90 bp AAGGGTAATTCTTCGGGTCATTCCAACAAATATCTTCTGATTGAGCCCAACTTGCTGCTGGGTCTGTGCTaGCTGAGGTACCGTTTGCTG +
Preference number: 5 (lower is better)
Translates to: KGNSSGHSNKYLLIEPNLLLGLC*LRYRLL
Trigger: CAGCAAACGGTACCTCAGCAAGCACAGACCCAGCAG...CAAGTTGGGCTCAATCAGAAGATATTTGTTGGAATGACCCGAAGAATTACCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CAA 90 bp AAGGGTAATTCTTCGGGTCATTCCAACAAATATCTTCTGATTGAGCCCAACTTGACGTCATCCTCGCTGTaGAGCGGCTCTTCTTCCACC +
Preference number: 5 (lower is better)
Translates to: KGNSSGHSNKYLLIEPNLTSSSL*SGSSST
Trigger: GGTGGAAGAAGAGCCGCTCAACAGCGAGGATGACGT...CAAGTTGGGCTCAATCAGAAGATATTTGTTGGAATGACCCGAAGAATTACCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CAA 90 bp AATGACCACCAGGCAAGAGCTCATCTACTGAAAGGCACACACTTCCATGTTAGTATGCTGCTGCTGAACTaGCAACAAAAGCTGCTGTTC +
Preference number: 5 (lower is better)
Translates to: NDHQARAHLLKGTHFHVSMLLLN*QQKLLF
Trigger: GAACAGCAGCTTTTGTTGCAAGTTCAGCAGCAGCAT...ACTAACATGGAAGTGTGTGCCTTTCAGTAGATGAGCTCTTGCCTGGTGGTCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021345.14
CDS-3UTR CAA 90 bp ACATCTCACGTGTGCTGTACAACTGCAGCTCCATGGGACCTTTGTGAGATGAAATCCACCAGGCTGCATTaGTGGTATAACTTGTTGTTG +
Preference number: 5 (lower is better)
Translates to: TSHVCCTTAAPWDLCEMKSTRLH*WYNLLL
Trigger: CAACAACAAGTTATACCACAAATGCAGCCTGGTGGA...TTTCATCTCACAAAGGTCCCATGGAGCTGCAGTTGTACAGCACACGTGAGATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CAA 90 bp GTTTCCTCTTATAGAGTGGGACTGAGCAGTTTTTCTGTACAGAAATTAAGCTGTTTGCTGAGGTACCGTTaGCTGAGGTTGCGCTTGCTG +
Preference number: 5 (lower is better)
Translates to: VSSYRVGLSSFSVQKLSCLLRYR*LRLRLL
Trigger: CAGCAAGCGCAACCTCAGCAAACGGTACCTCAGCAA...ACAGCTTAATTTCTGTACAGAAAAACTGCTCAGTCCCACTCTATAAGAGGAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CAA 90 bp AAGGGTAATTCTTCGGGTCATTCCAACAAATATCTTCTGATTGAGCCCAACTTGTTGTGGTGCTGTAGCTaGCTGGGATGCAGGAATGAG +
Preference number: 5 (lower is better)
Translates to: KGNSSGHSNKYLLIEPNLLWCCS*LGCRNE
Trigger: CTCATTCCTGCATCCCAGCAAGCTACAGCACCACAA...CAAGTTGGGCTCAATCAGAAGATATTTGTTGGAATGACCCGAAGAATTACCCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CAA 90 bp TCTTATAGAGTGGGACTGAGCAGTTTTTCTGTACAGAAATTAAGCTGTCACTTTTTGCTGAGGTACCGTTaGCTGAGGTTGCGCTTGCTG +
Preference number: 5 (lower is better)
Translates to: SYRVGLSSFSVQKLSCHFLLRYR*LRLRLL
Trigger: CAGCAAGCGCAACCTCAGCAAACGGTACCTCAGCAA...AAAGTGACAGCTTAATTTCTGTACAGAAAAACTGCTCAGTCCCACTCTATAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CAA 90 bp GCTTTACATGCTAATTACCAATGGCAGGTTCCTGTATTTAAAATCGACAGTTACTTGTGGTGCTGTAGCTaGCTGGGATGCAGGAATGAG +
Preference number: 5 (lower is better)
Translates to: ALHANYQWQVPVFKIDSYLWCCS*LGCRNE
Trigger: CTCATTCCTGCATCCCAGCAAGCTACAGCACCACAA...GTAACTGTCGATTTTAAATACAGGAACCTGCCATTGGTAATTAGCATGTAAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CAA 90 bp GTTTCCTCTTATAGAGTGGGACTGAGCAGTTTTTCTGTACAGAAATTAAGCTGTATGCTGCTGCTGAACTaGCAACAAAAGCTGCTGTTC +
Preference number: 5 (lower is better)
Translates to: VSSYRVGLSSFSVQKLSCMLLLN*QQKLLF
Trigger: GAACAGCAGCTTTTGTTGCAAGTTCAGCAGCAGCAT...ACAGCTTAATTTCTGTACAGAAAAACTGCTCAGTCCCACTCTATAAGAGGAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS-3UTR CAA 90 bp GTGAAGTTTTGGCTGATAGATGTCCCAAGTTTCAAACCGTCCATTTTAACTTTTATCAGGAACAATAACTaGTGGTGCTGTAGCTTGCTG +
Preference number: 5 (lower is better)
Translates to: VKFWLIDVPSFKPSILTFIRNNN*WCCSLL
Trigger: CAGCAAGCTACAGCACCACAAGTTATTGTTCCTGAT...AAAAGTTAAAATGGACGGTTTGAAACTTGGGACATCTATCAGCCAAAACTTCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS CAA 72 bp CTGTGGCTGCTGCTGTCCGGCTGCAGGCATCGGCGCTaGTGCCGGGGCGGGTGCTGCCACTGTTGTAGGAAT +
Preference number: 6 (lower is better)
Translates to: LWLLLSGCRHRR*CRGGCCHCCRN
Trigger: ATTCCTACAACAGTGGCAGCACCCGCCCCGGCACAAGCGCCGATGCCTGCAGCCGGACAGCAGCAGCCACAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS CAA 90 bp CTGCTGGGTCTGTGCTTGCTGAGGTACCGTTTGCTGAGGTTGCGCTaGCTGGTGCTGGTGGTGGTGGTGGTGATGCTGCTGCTGCTGGGG +
Preference number: 6 (lower is better)
Translates to: LLGLCLLRYRLLRLR*LVLVVVVVMLLLLG
Trigger: CCCCAGCAGCAGCAGCATCACCACCACCACCACCAGCACCAGCAAGCGCAACCTCAGCAAACGGTACCTCAGCAAGCACAGACCCAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS CAA 90 bp GAGGACCTGCTGGGTCTGTGCTTGCTGAGGTACCGTTTGCTGAGGTaGCGCTTGCTGGTGCTGGTGGTGGTGGTGGTGATGCTGCTGCTG +
Preference number: 6 (lower is better)
Translates to: EDLLGLCLLRYRLLR*RLLVLVVVVVMLLL
Trigger: CAGCAGCAGCATCACCACCACCACCACCAGCACCAGCAAGCGCAACCTCAGCAAACGGTACCTCAGCAAGCACAGACCCAGCAGGTCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS GCA 72 bp GGCTGCAGGCATCGGCGCTTGTGCCGGGGCGGGTGCTaGCACTGTTGTAGGAATGACCTGAGTCTTATTTCC +
Preference number: 6 (lower is better)
Translates to: GCRHRRLCRGGC*HCCRNDLSLIS
Trigger: GGAAATAAGACTCAGGTCATTCCTACAACAGTGGCAGCACCCGCCCCGGCACAAGCGCCGATGCCTGCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS GCA 72 bp TCCGGCTGCAGGCATCGGCGCTTGTGCCGGGGCGGGTaGTGCCACTGTTGTAGGAATGACCTGAGTCTTATT +
Preference number: 6 (lower is better)
Translates to: SGCRHRRLCRGG*CHCCRNDLSLI
Trigger: AATAAGACTCAGGTCATTCCTACAACAGTGGCAGCACCCGCCCCGGCACAAGCGCCGATGCCTGCAGCCGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS CAA 72 bp GAGGACCTGCTGGGTCTGTGCTTGCTGAGGTACCGTTaGCTGAGGTTGCGCTTGCTGGTGCTGGTGGTGGTG +
Preference number: 6 (lower is better)
Translates to: EDLLGLCLLRYR*LRLRLLVLVVV
Trigger: CACCACCACCAGCACCAGCAAGCGCAACCTCAGCAAACGGTACCTCAGCAAGCACAGACCCAGCAGGTCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS CAA 72 bp CTGTGCTTGCTGAGGTACCGTTTGCTGAGGTTGCGCTaGCTGGTGCTGGTGGTGGTGGTGGTGATGCTGCTG +
Preference number: 6 (lower is better)
Translates to: LCLLRYRLLRLR*LVLVVVVVMLL
Trigger: CAGCAGCATCACCACCACCACCACCAGCACCAGCAAGCGCAACCTCAGCAAACGGTACCTCAGCAAGCACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS CAA 90 bp TGTAGCTTGCTGGGATGCAGGAATGAGGACCTGCTGGGTCTGTGCTaGCTGAGGTACCGTTTGCTGAGGTTGCGCTTGCTGGTGCTGGTG +
Preference number: 6 (lower is better)
Translates to: CSLLGCRNEDLLGLC*LRYRLLRLRLLVLV
Trigger: CACCAGCACCAGCAAGCGCAACCTCAGCAAACGGTACCTCAGCAAGCACAGACCCAGCAGGTCCTCATTCCTGCATCCCAGCAAGCTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS GCA 72 bp TTGCTGGGATGCAGGAATGAGGACCTGCTGGGTCTGTaGTTGCTGAGGTACCGTTTGCTGAGGTTGCGCTTG +
Preference number: 6 (lower is better)
Translates to: LLGCRNEDLLGL*LLRYRLLRLRL
Trigger: CAAGCGCAACCTCAGCAAACGGTACCTCAGCAAGCACAGACCCAGCAGGTCCTCATTCCTGCATCCCAGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS GCA 72 bp TGGCAGACGACAACATTCTCAGTGTCAAAGAGTTCCTaGCCTTCCTCGTCACTGACGTCATCCTCGCTGTTG +
Preference number: 6 (lower is better)
Translates to: WQTTTFSVSKSS*PSSSLTSSSLL
Trigger: CAACAGCGAGGATGACGTCAGTGACGAGGAAGGGCAGGAACTCTTTGACACTGAGAATGTTGTCGTCTGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS CAA 72 bp ATCTTCCTCAGAAGATGTATCCCCTGTTCCATCAACTaGCAGCACCAACGGAGCTTGCTGTTGGGCAGGCTG +
Preference number: 6 (lower is better)
Translates to: IFLRRCIPCSIN*QHQRSLLLGRL
Trigger: CAGCCTGCCCAACAGCAAGCTCCGTTGGTGCTGCAAGTTGATGGAACAGGGGATACATCTTCTGAGGAAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7
CDS TCA 72 bp GCCGGGGCGGGTGCTGCCACTGTTGTAGGAATGACCTaGGTCTTATTTCCTGTAAATAAGATTTGCTGTGGC +
Preference number: 6 (lower is better)
Translates to: AGAGAATVVGMT*VLFPVNKICCG
Trigger: GCCACAGCAAATCTTATTTACAGGAAATAAGACTCAGGTCATTCCTACAACAGTGGCAGCACCCGCCCCGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021345.14
ENSMUST00000063314.7