Pregenerated sensors for GSTT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001663Ensembl transcript IDs: ENSMUST00000001713.10, ENSMUST00000120177.8, ENSMUST00000139724.3
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGAGGTGCATCCCCAGTGTAATGCAAGTTGTGAATTGTGAACTGTaGGTTGTGAACTGCCGCAGCTGGTGCAGGGATGAAGCGTCTGAC | + |
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Preference number: 1 (lower is better) Translates to: VRCIPSVMQVVNCEL*VVNCRSWCRDEASD Trigger: GTCAGACGCTTCATCCCTGCACCAGCTGCGGCAGTTCACAACTCACAGTTCACAATTCACAACTTGCATTACACTGGGGATGCACCTCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| 3UTR-3UTR CCA 90 bp | TCACAGAAAAAGGGTGAAGATGGAGCTGAGCCTGAGAGCCATCATGGTGTGAGGGTGAACTGCCGCAGCTaGTGCAGGGATGAAGCGTCT | + |
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Preference number: 2 (lower is better) Translates to: SQKKGEDGAEPESHHGVRVNCRS*CRDEAS Trigger: AGACGCTTCATCCCTGCACCAGCTGCGGCAGTTCAC...CCTCACACCATGATGGCTCTCAGGCTCAGCTCCATCTTCACCCTTTTTCTGTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| 3UTR TCA 72 bp | ATCCCCAGTGTAATGCAAGTTGTGAATTGTGAACTGTaGGTTGTGAACTGCCGCAGCTGGTGCAGGGATGAA | + |
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Preference number: 3 (lower is better) Translates to: IPSVMQVVNCEL*VVNCRSWCRDE Trigger: TTCATCCCTGCACCAGCTGCGGCAGTTCACAACTCACAGTTCACAATTCACAACTTGCATTACACTGGGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| 3UTR TCA 72 bp | ATTACCCAGACTCAAGGGGAAAGTAGTGATTATAGTTaGGGTCATGTGTGGCTATCACAGAAAAAGGGTGAA | + |
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Preference number: 3 (lower is better) Translates to: ITQTQGESSDYS*GHVWLSQKKGE Trigger: TTCACCCTTTTTCTGTGATAGCCACACATGACCTCAACTATAATCACTACTTTCCCCTTGAGTCTGGGTAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| CDS-3UTR GCA 90 bp | GATGGAGCTGAGCCTGAGAGCCATCATGGTGTGAGGAGTGAGGTGCATCCCCAGACACGAGCACGAGCCTaGAGGTCTTGGGGGTACCAG | + |
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Preference number: 4 (lower is better) Translates to: DGAEPESHHGVRSEVHPQTRARA*RSWGYQ Trigger: CTGGTACCCCCAAGACCTGCAGGCTCGTGCTCGTGT...CTGGGGATGCACCTCACTCCTCACACCATGATGGCTCTCAGGCTCAGCTCCATC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| CDS-3UTR GCA 90 bp | GGTGAAGATGGAGCTGAGCCTGAGAGCCATCATGGTGTGAGGAGTGAGGTGCATGGGAACATCACCTTATaGCACAGGGCCCTGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: GEDGAEPESHHGVRSEVHGNITL*HRALRQ Trigger: CTGCCTCAGGGCCCTGTGGCATAAGGTGATGTTCCC...ATGCACCTCACTCCTCACACCATGATGGCTCTCAGGCTCAGCTCCATCTTCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| CDS-3UTR GCA 90 bp | GAGAGCCATCATGGTGTGAGGAGTGAGGTGCATCCCCAGTGTAATGCAAGTTGTCACTCGCTGGTACCATaGAGCCAGCCTGGGATGCCC | + |
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Preference number: 4 (lower is better) Translates to: ESHHGVRSEVHPQCNASCHSLVP*SQPGMP Trigger: GGGCATCCCAGGCTGGCTGCATGGTACCAGCGAGTG...ACAACTTGCATTACACTGGGGATGCACCTCACTCCTCACACCATGATGGCTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| CDS-3UTR GCA 90 bp | GAGAGCCATCATGGTGTGAGGAGTGAGGTGCATCCCCAGTGTAATGCAAGTTGTATGGCGCGACAGGGCTaGGACAGCAGATCCAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: ESHHGVRSEVHPQCNASCMARQG*DSRSRY Trigger: GTACCTGGATCTGCTGTCGCAGCCCTGTCGCGCCAT...ACAACTTGCATTACACTGGGGATGCACCTCACTCCTCACACCATGATGGCTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| CDS-3UTR CCA 90 bp | TCACAGAAAAAGGGTGAAGATGGAGCTGAGCCTGAGAGCCATCATGGTGTGAGGTTCAGGATGACTTCATaGGCTTCCCGGAAGAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: SQKKGEDGAEPESHHGVRFRMTS*ASRKRS Trigger: GGACCTCTTCCGGGAAGCCCATGAAGTCATCCTGAA...CCTCACACCATGATGGCTCTCAGGCTCAGCTCCATCTTCACCCTTTTTCTGTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| CDS-3UTR TCA 90 bp | GGGAAAGTAGTGATTATAGTTGAGGTCATGTGTGGCTATCACAGAAAAAGGGTGTATGCCACAGGGCCCTaGGGCAGCTTCTCCGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: GKVVIIVEVMCGYHRKRVYATGP*GSFSEG Trigger: GCCTTCGGAGAAGCTGCCTCAGGGCCCTGTGGCATA...CACCCTTTTTCTGTGATAGCCACACATGACCTCAACTATAATCACTACTTTCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| CDS-3UTR GCA 90 bp | CCCAAATCAAGCCCCAGTTTATTACCCAGACTCAAGGGGAAAGTAGTGATTATAGCAGCCAGCCTGGGATaGCCTTCAAAGACTGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: PKSSPSLLPRLKGKVVIIAASLG*PSKTGQ Trigger: CTGCCCAGTCTTTGAAGGGCATCCCAGGCTGGCTGC...TATAATCACTACTTTCCCCTTGAGTCTGGGTAATAAACTGGGGCTTGATTTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| CDS-3UTR GCA 90 bp | GAGAGCCATCATGGTGTGAGGAGTGAGGTGCATCCCCAGTGTAATGCAAGTTGTCTGGGCATCAGCTTCTaGTTTATGATGAGGTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: ESHHGVRSEVHPQCNASCLGISF*FMMRSA Trigger: TGCTGACCTCATCATAAAGCAGAAGCTGATGCCCAG...ACAACTTGCATTACACTGGGGATGCACCTCACTCCTCACACCATGATGGCTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| CDS-3UTR GCA 90 bp | TCACAGAAAAAGGGTGAAGATGGAGCTGAGCCTGAGAGCCATCATGGTGTGAGGGTTTCAGGAGGTATTTaGTCACCAAGGAAAACAGGG | + |
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Preference number: 4 (lower is better) Translates to: SQKKGEDGAEPESHHGVRVSGGI*SPRKTG Trigger: CCCTGTTTTCCTTGGTGAGCAAATACCTCCTGAAAC...CCTCACACCATGATGGCTCTCAGGCTCAGCTCCATCTTCACCCTTTTTCTGTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| CDS-3UTR CCA 90 bp | TCAAGCCCCAGTTTATTACCCAGACTCAAGGGGAAAGTAGTGATTATAGTTGAGCCAGTTCTGCCAACGTaGCTGCCAGTGTTTCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: SSPSLLPRLKGKVVIIVEPVLPT*LPVFQE Trigger: CTCCTGAAACACTGGCAGCCACGTTGGCAGAACTGG...CTCAACTATAATCACTACTTTCCCCTTGAGTCTGGGTAATAAACTGGGGCTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| CDS-3UTR CCA 90 bp | AAGGGGAAAGTAGTGATTATAGTTGAGGTCATGTGTGGCTATCACAGAAAAAGGACCATGCAGCCAGCCTaGGATGCCCTTCAAAGACTG | + |
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Preference number: 4 (lower is better) Translates to: KGKVVIIVEVMCGYHRKRTMQPA*DALQRL Trigger: CAGTCTTTGAAGGGCATCCCAGGCTGGCTGCATGGT...CCTTTTTCTGTGATAGCCACACATGACCTCAACTATAATCACTACTTTCCCCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| CDS-3UTR CCA 90 bp | AGCCCCAGTTTATTACCCAGACTCAAGGGGAAAGTAGTGATTATAGTTGAGGTCTCTTGGGGGTACCAGTaGTCAGGAACCTTATACTTG | + |
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Preference number: 4 (lower is better) Translates to: SPSLLPRLKGKVVIIVEVSWGYQ*SGTLYL Trigger: CAAGTATAAGGTTCCTGACCACTGGTACCCCCAAGA...GACCTCAACTATAATCACTACTTTCCCCTTGAGTCTGGGTAATAAACTGGGGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| CDS-3UTR CCA 90 bp | AAGGGGAAAGTAGTGATTATAGTTGAGGTCATGTGTGGCTATCACAGAAAAAGGTCATTGCCAGCACTCTaGGCATCAGCTTCTGCTTTA | + |
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Preference number: 4 (lower is better) Translates to: KGKVVIIVEVMCGYHRKRSLPAL*ASASAL Trigger: TAAAGCAGAAGCTGATGCCCAGAGTGCTGGCAATGA...CCTTTTTCTGTGATAGCCACACATGACCTCAACTATAATCACTACTTTCCCCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| CDS-3UTR CCA 90 bp | AAATCAAGCCCCAGTTTATTACCCAGACTCAAGGGGAAAGTAGTGATTATAGTTAGGAAGTCTTTGTCCTaGAGGAACTTGTCTTCAAGC | + |
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Preference number: 4 (lower is better) Translates to: KSSPSLLPRLKGKVVIIVRKSLS*RNLSSS Trigger: GCTTGAAGACAAGTTCCTCCAGGACAAAGACTTCCT...AACTATAATCACTACTTTCCCCTTGAGTCTGGGTAATAAACTGGGGCTTGATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| CDS TCA 90 bp | CGGGCAAACGCATCGCTGAGGTGCTCACCTGCAGATAGTCCAGCATaGGGGAGGAGAACACTGGGGGTCTCTGATAGCCTGGGCCAAGGT | + |
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Preference number: 5 (lower is better) Translates to: RANASLRCSPADSPA*GRRTLGVSDSLGQG Trigger: ACCTTGGCCCAGGCTATCAGAGACCCCCAGTGTTCTCCTCCCTCATGCTGGACTATCTGCAGGTGAGCACCTCAGCGATGCGTTTGCCCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120177.8 |
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| CDS TCA 90 bp | CTTCAAAGACTGGGCAGCCACCACCTACAGGATGCATCAGCTCTGTaGTGGCCACCAAGTCGGCCAGGGAGATGTGGGGCCCAACAAGGA | + |
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Preference number: 5 (lower is better) Translates to: LQRLGSHHLQDASAL*WPPSRPGRCGAQQG Trigger: TCCTTGTTGGGCCCCACATCTCCCTGGCCGACTTGGTGGCCATCACAGAGCTGATGCATCCTGTAGGTGGTGGCTGCCCAGTCTTTGAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001713.10 ENSMUST00000120177.8 |
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| CDS TCA 90 bp | TGGCTGGTACCCTCTTCATGGGGTTCACCCGGGCAAACGCATCGCTaGGGTGCTCACCTGCAGATAGTCCAGCATGAGGGAGGAGAACAC | + |
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Preference number: 5 (lower is better) Translates to: WLVPSSWGSPGQTHR*GAHLQIVQHEGGEH Trigger: GTGTTCTCCTCCCTCATGCTGGACTATCTGCAGGTGAGCACCTCAGCGATGCGTTTGCCCGGGTGAACCCCATGAAGAGGGTACCAGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120177.8 |
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| CDS CCA 90 bp | GATAGCCACACTCTCACACAGGGTGAAGCCACCATCCATCATGGCTaGTACCCTCTTCATGGGGTTCACCCGGGCAAACGCATCGCTGAG | + |
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Preference number: 5 (lower is better) Translates to: DSHTLTQGEATIHHG*YPLHGVHPGKRIAE Trigger: CTCAGCGATGCGTTTGCCCGGGTGAACCCCATGAAGAGGGTACCAGCCATGATGGATGGTGGCTTCACCCTGTGTGAGAGTGTGGCTATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001713.10 ENSMUST00000120177.8 |
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| CDS-3UTR CAA 90 bp | GATGGAGCTGAGCCTGAGAGCCATCATGGTGTGAGGAGTGAGGTGCATCCCCAGTTGTCCTGGAGGAACTaGTCTTCAAGCACCTGTAGG | + |
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Preference number: 5 (lower is better) Translates to: DGAEPESHHGVRSEVHPQLSWRN*SSSTCR Trigger: CCTACAGGTGCTTGAAGACAAGTTCCTCCAGGACAA...CTGGGGATGCACCTCACTCCTCACACCATGATGGCTCTCAGGCTCAGCTCCATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| CDS GCA 90 bp | ACATCCAGTTCTGCCAACGTGGCTGCCAGTGTTTCAGGAGGTATTTaGTCACCAAGGAAAACAGGGAACATCACCTTATGCCACAGGGCC | + |
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Preference number: 5 (lower is better) Translates to: TSSSANVAASVSGGI*SPRKTGNITLCHRA Trigger: GGCCCTGTGGCATAAGGTGATGTTCCCTGTTTTCCTTGGTGAGCAAATACCTCCTGAAACACTGGCAGCCACGTTGGCAGAACTGGATGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000001713.10 ENSMUST00000120177.8 ENSMUST00000139724.3 |
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| CDS-3UTR CAA 90 bp | AAGGGGAAAGTAGTGATTATAGTTGAGGTCATGTGTGGCTATCACAGAAAAAGGCTGAGGTGCTCACCCTaGCGCAGCTCCACCGTGTGC | + |
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Preference number: 5 (lower is better) Translates to: KGKVVIIVEVMCGYHRKRLRCSP*RSSTVC Trigger: GCACACGGTGGAGCTGCGCAAGGGTGAGCACCTCAG...CCTTTTTCTGTGATAGCCACACATGACCTCAACTATAATCACTACTTTCCCCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| CDS-3UTR CAA 90 bp | AAGCCCAAATCAAGCCCCAGTTTATTACCCAGACTCAAGGGGAAAGTAGTGATTCCAACAAGGAAGTCTTaGTCCTGGAGGAACTTGTCT | + |
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Preference number: 5 (lower is better) Translates to: KPKSSPSLLPRLKGKVVIPTRKS*SWRNLS Trigger: AGACAAGTTCCTCCAGGACAAAGACTTCCTTGTTGG...AATCACTACTTTCCCCTTGAGTCTGGGTAATAAACTGGGGCTTGATTTGGGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001713.10 |
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| CDS GCA 72 bp | AGGGCCCTGAGGCAGCTTCTCCGAAGGCCCGTATGCTaGCATGCCAGGTACTCGTCTACACGAGCACGAGCC | + |
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Preference number: 6 (lower is better) Translates to: RALRQLLRRPVC*HARYSSTRARA Trigger: GGCTCGTGCTCGTGTAGACGAGTACCTGGCATGGCAGCATACGGGCCTTCGGAGAAGCTGCCTCAGGGCCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000001713.10 ENSMUST00000120177.8 ENSMUST00000139724.3 |
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| CDS GCA 72 bp | CACAGGGCCCTGAGGCAGCTTCTCCGAAGGCCCGTATaGTGCCATGCCAGGTACTCGTCTACACGAGCACGA | + |
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Preference number: 6 (lower is better) Translates to: HRALRQLLRRPV*CHARYSSTRAR Trigger: TCGTGCTCGTGTAGACGAGTACCTGGCATGGCAGCATACGGGCCTTCGGAGAAGCTGCCTCAGGGCCCTGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000001713.10 ENSMUST00000120177.8 ENSMUST00000139724.3 |
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| CDS GCA 72 bp | GCCTCCACTCGCTGGTACCATGCAGCCAGCCTGGGATaGCCTTCAAAGACTGGGCAGCCACCACCTACAGGA | + |
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Preference number: 6 (lower is better) Translates to: ASTRWYHAASLG*PSKTGQPPPTG Trigger: TCCTGTAGGTGGTGGCTGCCCAGTCTTTGAAGGGCATCCCAGGCTGGCTGCATGGTACCAGCGAGTGGAGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001713.10 ENSMUST00000120177.8 |
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| CDS GCA 72 bp | GTCCTTCCCCACAGCTGCCTCCACTCGCTGGTACCATaGAGCCAGCCTGGGATGCCCTTCAAAGACTGGGCA | + |
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Preference number: 6 (lower is better) Translates to: VLPHSCLHSLVP*SQPGMPFKDWA Trigger: TGCCCAGTCTTTGAAGGGCATCCCAGGCTGGCTGCATGGTACCAGCGAGTGGAGGCAGCTGTGGGGAAGGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001713.10 ENSMUST00000120177.8 |
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| CDS TCA 72 bp | CCCTCTTCATGGGGTTCACCCGGGCAAACGCATCGCTaGGGTGCTCACCTGCAGATAGTCCAGCATGAGGGA | + |
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Preference number: 6 (lower is better) Translates to: PSSWGSPGQTHR*GAHLQIVQHEG Trigger: TCCCTCATGCTGGACTATCTGCAGGTGAGCACCTCAGCGATGCGTTTGCCCGGGTGAACCCCATGAAGAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120177.8 |
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| CDS TCA 72 bp | GGAAAACAGGGAACATCACCTTATGCCACAGGGCCCTaGGGCAGCTTCTCCGAAGGCCCGTATGCTGCCATG | + |
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Preference number: 6 (lower is better) Translates to: GKQGTSPYATGP*GSFSEGPYAAM Trigger: CATGGCAGCATACGGGCCTTCGGAGAAGCTGCCTCAGGGCCCTGTGGCATAAGGTGATGTTCCCTGTTTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000001713.10 ENSMUST00000120177.8 ENSMUST00000139724.3 |
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| CDS TCA 72 bp | GCATCGCTGAGGTGCTCACCTGCAGATAGTCCAGCATaGGGGAGGAGAACACTGGGGGTCTCTGATAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: ASLRCSPADSPA*GRRTLGVSDSL Trigger: CAGGCTATCAGAGACCCCCAGTGTTCTCCTCCCTCATGCTGGACTATCTGCAGGTGAGCACCTCAGCGATGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120177.8 |
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| CDS CCA 72 bp | ACTCTCACACAGGGTGAAGCCACCATCCATCATGGCTaGTACCCTCTTCATGGGGTTCACCCGGGCAAACGC | + |
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Preference number: 6 (lower is better) Translates to: TLTQGEATIHHG*YPLHGVHPGKR Trigger: GCGTTTGCCCGGGTGAACCCCATGAAGAGGGTACCAGCCATGATGGATGGTGGCTTCACCCTGTGTGAGAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001713.10 ENSMUST00000120177.8 |
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| CDS CCA 72 bp | GTACCATGCAGCCAGCCTGGGATGCCCTTCAAAGACTaGGCAGCCACCACCTACAGGATGCATCAGCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: VPCSQPGMPFKD*AATTYRMHQLC Trigger: ACAGAGCTGATGCATCCTGTAGGTGGTGGCTGCCCAGTCTTTGAAGGGCATCCCAGGCTGGCTGCATGGTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001713.10 ENSMUST00000120177.8 |
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| CDS GCA 72 bp | CACTGGATCATTGCCAGCACTCTGGGCATCAGCTTCTaGTTTATGATGAGGTCAGCAGGGGGACAGTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: HWIIASTLGISF*FMMRSAGGQSF Trigger: GAAGGACTGTCCCCCTGCTGACCTCATCATAAAGCAGAAGCTGATGCCCAGAGTGCTGGCAATGATCCAGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001713.10 ENSMUST00000120177.8 |
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| CDS CAA 90 bp | AGGGAGATGTGGGGCCCAACAAGGAAGTCTTTGTCCTGGAGGAACTaGTCTTCAAGCACCTGTAGGTTAACATCCAGTTCTGCCAACGTG | + |
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Preference number: 6 (lower is better) Translates to: REMWGPTRKSLSWRN*SSSTCRLTSSSANV Trigger: CACGTTGGCAGAACTGGATGTTAACCTACAGGTGCTTGAAGACAAGTTCCTCCAGGACAAAGACTTCCTTGTTGGGCCCCACATCTCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000001713.10 ENSMUST00000120177.8 ENSMUST00000139724.3 |
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| CDS GCA 72 bp | TCTGCCAACGTGGCTGCCAGTGTTTCAGGAGGTATTTaGTCACCAAGGAAAACAGGGAACATCACCTTATGC | + |
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Preference number: 6 (lower is better) Translates to: SANVAASVSGGI*SPRKTGNITLC Trigger: GCATAAGGTGATGTTCCCTGTTTTCCTTGGTGAGCAAATACCTCCTGAAACACTGGCAGCCACGTTGGCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000001713.10 ENSMUST00000120177.8 ENSMUST00000139724.3 |
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| CDS CAA 72 bp | TGGGGCCCAACAAGGAAGTCTTTGTCCTGGAGGAACTaGTCTTCAAGCACCTGTAGGTTAACATCCAGTTCT | + |
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Preference number: 6 (lower is better) Translates to: WGPTRKSLSWRN*SSSTCRLTSSS Trigger: AGAACTGGATGTTAACCTACAGGTGCTTGAAGACAAGTTCCTCCAGGACAAAGACTTCCTTGTTGGGCCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000001713.10 ENSMUST00000120177.8 ENSMUST00000139724.3 |
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