Pregenerated sensors for GSR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031584Ensembl transcript IDs: ENSMUST00000033992.9
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | ATACTCAGAAGAAGAAAGGGCTCCCGAGTGCCTCAGCCTTCCGTCTaGCATGTACTGTCATTTCTCCTTTACCTAACCAGCCTCAAGTCT | + |
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Preference number: 2 (lower is better) Translates to: ILRRRKGSRVPQPSV*HVLSFLLYLTSLKS Trigger: AGACTTGAGGCTGGTTAGGTAAAGGAGAAATGACAGTACATGCAAGACGGAAGGCTGAGGCACTCGGGAGCCCTTTCTTCTTCTGAGTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| 3UTR-3UTR TCA 90 bp | GAAGAAGAAAGGGCTCCCGAGTGCCTCAGCCTTCCGTCTTGCATGTACTGTCATACCACCAGAAATTCCTaGTTAAAATACAGAGATCTG | + |
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Preference number: 2 (lower is better) Translates to: EEERAPECLSLPSCMYCHTTRNS*LKYRDL Trigger: CAGATCTCTGTATTTTAATCAGGAATTTCTGGTGGT...ATGACAGTACATGCAAGACGGAAGGCTGAGGCACTCGGGAGCCCTTTCTTCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| 3UTR-3UTR TCA 90 bp | ATGAACCAGGAATACTCAGAAGAAGAAAGGGCTCCCGAGTGCCTCAGCCTTCCGTCAGGTACACTAACTTaGGTGTATGTCATGTACATT | + |
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Preference number: 2 (lower is better) Translates to: MNQEYSEEERAPECLSLPSGTLT*VYVMYI Trigger: AATGTACATGACATACACTCAAGTTAGTGTACCTGA...CGGAAGGCTGAGGCACTCGGGAGCCCTTTCTTCTTCTGAGTATTCCTGGTTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| 3UTR-3UTR CCA 90 bp | GTGCCTCAGCCTTCCGTCTTGCATGTACTGTCATTTCTCCTTTACCTAACCAGCGTGCGTGTGTATAGCTaGAAATTTACACCACCAGAA | + |
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Preference number: 2 (lower is better) Translates to: VPQPSVLHVLSFLLYLTSVRVYS*KFTPPE Trigger: TTCTGGTGGTGTAAATTTCCAGCTATACACACGCAC...GCTGGTTAGGTAAAGGAGAAATGACAGTACATGCAAGACGGAAGGCTGAGGCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| 3UTR CAA 90 bp | TCCATCAGGTACACTAACTTGAGTGTATGTCATGTACATTTAAACTaGGAATGGGGCCAAAGCAAGAAAAACACAACAAACACAAGGCTG | + |
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Preference number: 2 (lower is better) Translates to: SIRYTNLSVCHVHLN*EWGQSKKNTTNTRL Trigger: CAGCCTTGTGTTTGTTGTGTTTTTCTTGCTTTGGCCCCATTCCAAGTTTAAATGTACATGACATACACTCAAGTTAGTGTACCTGATGGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| 3UTR CAA 90 bp | ATAAAAGAAATTAGCCAGCAATATTCATCCATCAGGTACACTAACTaGAGTGTATGTCATGTACATTTAAACTTGGAATGGGGCCAAAGC | + |
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Preference number: 2 (lower is better) Translates to: IKEISQQYSSIRYTN*SVCHVHLNLEWGQS Trigger: GCTTTGGCCCCATTCCAAGTTTAAATGTACATGACATACACTCAAGTTAGTGTACCTGATGGATGAATATTGCTGGCTAATTTCTTTTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| 3UTR-3UTR CAA 90 bp | ATGAACCAGGAATACTCAGAAGAAGAAAGGGCTCCCGAGTGCCTCAGCCTTCCGAGGATTCTGAGTTGTTaGAGGCCACCTTGGGCTGCA | + |
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Preference number: 3 (lower is better) Translates to: MNQEYSEEERAPECLSLPRILSC*RPPWAA Trigger: TGCAGCCCAAGGTGGCCTCAAACAACTCAGAATCCT...CGGAAGGCTGAGGCACTCGGGAGCCCTTTCTTCTTCTGAGTATTCCTGGTTCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| 3UTR GCA 72 bp | AACCAGGAATACTCAGAAGAAGAAAGGGCTCCCGAGTaGCTCAGCCTTCCGTCTTGCATGTACTGTCATTTC | + |
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Preference number: 3 (lower is better) Translates to: NQEYSEEERAPE*LSLPSCMYCHF Trigger: GAAATGACAGTACATGCAAGACGGAAGGCTGAGGCACTCGGGAGCCCTTTCTTCTTCTGAGTATTCCTGGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| 3UTR-3UTR CAA 90 bp | ATGAACCAGGAATACTCAGAAGAAGAAAGGGCTCCCGAGTGCCTCAGCCTTCCGATCAGGTACACTAACTaGAGTGTATGTCATGTACAT | + |
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Preference number: 3 (lower is better) Translates to: MNQEYSEEERAPECLSLPIRYTN*SVCHVH Trigger: ATGTACATGACATACACTCAAGTTAGTGTACCTGAT...CGGAAGGCTGAGGCACTCGGGAGCCCTTTCTTCTTCTGAGTATTCCTGGTTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR TCA 90 bp | GTGCCTCAGCCTTCCGTCTTGCATGTACTGTCATTTCTCCTTTACCTAACCAGCGTGCCACCCAGCTTGTaGCTCTCCACCACCGCGGCC | + |
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Preference number: 4 (lower is better) Translates to: VPQPSVLHVLSFLLYLTSVPPSL*LSTTAA Trigger: GGCCGCGGTGGTGGAGAGTCACAAGCTGGGTGGCAC...GCTGGTTAGGTAAAGGAGAAATGACAGTACATGCAAGACGGAAGGCTGAGGCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR TCA 90 bp | AATGAACCAGGAATACTCAGAAGAAGAAAGGGCTCCCGAGTGCCTCAGCCTTCCCTCGTGGTCACAGCGTaGTACATCGGGGTAAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: NEPGILRRRKGSRVPQPSLVVTA*YIGVKA Trigger: TGCCTTTACCCCGATGTATCACGCTGTGACCACGAG...GGAAGGCTGAGGCACTCGGGAGCCCTTTCTTCTTCTGAGTATTCCTGGTTCATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR TCA 90 bp | AATGAACCAGGAATACTCAGAAGAAGAAAGGGCTCCCGAGTGCCTCAGCCTTCCGGTGACCAGCTCCTCTaGAGAGGTAGGATGAATGGC | + |
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Preference number: 4 (lower is better) Translates to: NEPGILRRRKGSRVPQPSGDQLL*RGRMNG Trigger: GCCATTCATCCTACCTCTTCAGAGGAGCTGGTCACC...GGAAGGCTGAGGCACTCGGGAGCCCTTTCTTCTTCTGAGTATTCCTGGTTCATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR CCA 90 bp | GTGCCTCAGCCTTCCGTCTTGCATGTACTGTCATTTCTCCTTTACCTAACCAGCTTGGGTCCCGTCCAATaGCCCAGAGCAGGCAGTCAA | + |
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Preference number: 4 (lower is better) Translates to: VPQPSVLHVLSFLLYLTSLGPVQ*PRAGSQ Trigger: TTGACTGCCTGCTCTGGGCCATTGGACGGGACCCAA...GCTGGTTAGGTAAAGGAGAAATGACAGTACATGCAAGACGGAAGGCTGAGGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR TCA 90 bp | GTGCCTCAGCCTTCCGTCTTGCATGTACTGTCATTTCTCCTTTACCTAACCAGCGGCAAGTCCTCCAGCTaGAAGAAGCCATCACTGGTG | + |
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Preference number: 4 (lower is better) Translates to: VPQPSVLHVLSFLLYLTSGKSSS*KKPSLV Trigger: CACCAGTGATGGCTTCTTTCAGCTGGAGGACTTGCC...GCTGGTTAGGTAAAGGAGAAATGACAGTACATGCAAGACGGAAGGCTGAGGCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR TCA 90 bp | GTGCCTCAGCCTTCCGTCTTGCATGTACTGTCATTTCTCCTTTACCTAACCAGCCCAATCCCCTGCATGTaGATGCCAACCACCTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: VPQPSVLHVLSFLLYLTSPIPCM*MPTTFS Trigger: GGAAAAGGTGGTTGGCATTCACATGCAGGGGATTGG...GCTGGTTAGGTAAAGGAGAAATGACAGTACATGCAAGACGGAAGGCTGAGGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR CCA 90 bp | GTGCCTCAGCCTTCCGTCTTGCATGTACTGTCATTTCTCCTTTACCTAACCAGCCAGGCAGTCAACATCTaGAATCATGGTCGTGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: VPQPSVLHVLSFLLYLTSQAVNI*NHGRGG Trigger: CCCACCACGACCATGATTCCAGATGTTGACTGCCTG...GCTGGTTAGGTAAAGGAGAAATGACAGTACATGCAAGACGGAAGGCTGAGGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR CCA 90 bp | ATGAACCAGGAATACTCAGAAGAAGAAAGGGCTCCCGAGTGCCTCAGCCTTCCGCATTCAAACAGTCTATaGGCAAGTTTCCGGCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: MNQEYSEEERAPECLSLPHSNSL*ASFRPA Trigger: TGCTGGCCGGAAACTTGCCCATAGACTGTTTGAATG...CGGAAGGCTGAGGCACTCGGGAGCCCTTTCTTCTTCTGAGTATTCCTGGTTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| 3UTR CAA 72 bp | AGAAGAAAGGGCTCCCGAGTGCCTCAGCCTTCCGTCTaGCATGTACTGTCATTTCTCCTTTACCTAACCAGC | + |
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Preference number: 4 (lower is better) Translates to: RRKGSRVPQPSV*HVLSFLLYLTS Trigger: GCTGGTTAGGTAAAGGAGAAATGACAGTACATGCAAGACGGAAGGCTGAGGCACTCGGGAGCCCTTTCTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR GCA 90 bp | AATGAACCAGGAATACTCAGAAGAAGAAAGGGCTCCCGAGTGCCTCAGCCTTCCTCCCCTGCATGTGAATaGCAACCACCTTTTCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: NEPGILRRRKGSRVPQPSSPACE*QPPFPL Trigger: AAGAGGAAAAGGTGGTTGGCATTCACATGCAGGGGA...GGAAGGCTGAGGCACTCGGGAGCCCTTTCTTCTTCTGAGTATTCCTGGTTCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR TCA 90 bp | AGATACATAAGTTCTTCTGTGCGTGTGTATAGCTGGAAATTTACACCACCAGAAGGGATCTGGCTCTCGTaGGGAACTGTGGGCACGCCT | + |
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Preference number: 4 (lower is better) Translates to: RYISSSVRVYSWKFTPPEGIWLS*GTVGTP Trigger: AGGCGTGCCCACAGTTCCTCACGAGAGCCAGATCCC...TTCTGGTGGTGTAAATTTCCAGCTATACACACGCACAGAAGAACTTATGTATCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR TCA 90 bp | AATGAACCAGGAATACTCAGAAGAAGAAAGGGCTCCCGAGTGCCTCAGCCTTCCCAGCATAGACGCCTTTaGCATTGGTATTCTGGAATT | + |
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Preference number: 4 (lower is better) Translates to: NEPGILRRRKGSRVPQPSQHRRL*HWYSGI Trigger: AATTCCAGAATACCAATGTCAAAGGCGTCTATGCTG...GGAAGGCTGAGGCACTCGGGAGCCCTTTCTTCTTCTGAGTATTCCTGGTTCATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR GCA 90 bp | TACATAAGTTCTTCTGTGCGTGTGTATAGCTGGAAATTTACACCACCAGAAATTCCAGGGCAGAGAGGATaGCCGCGATCTCCACAGCAA | + |
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Preference number: 4 (lower is better) Translates to: YISSSVRVYSWKFTPPEIPGQRG*PRSPQQ Trigger: TTGCTGTGGAGATCGCGGGCATCCTCTCTGCCCTGG...AATTTCTGGTGGTGTAAATTTCCAGCTATACACACGCACAGAAGAACTTATGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR CCA 90 bp | ATGAACCAGGAATACTCAGAAGAAGAAAGGGCTCCCGAGTGCCTCAGCCTTCCGAATTATTTTGATAGATaGTGTTCAGGCGGCTCACAT | + |
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Preference number: 4 (lower is better) Translates to: MNQEYSEEERAPECLSLPNYFDR*CSGGSH Trigger: ATGTGAGCCGCCTGAACACCATCTATCAAAATAATT...CGGAAGGCTGAGGCACTCGGGAGCCCTTTCTTCTTCTGAGTATTCCTGGTTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR CCA 90 bp | ATAAGTTCTTCTGTGCGTGTGTATAGCTGGAAATTTACACCACCAGAAATTCCTTGGGCACGCCTCCTGTaGCAATCAGGATGTGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: ISSSVRVYSWKFTPPEIPWARLL*QSGCVE Trigger: CTCCACACATCCTGATTGCCACAGGAGGCGTGCCCA...AGGAATTTCTGGTGGTGTAAATTTCCAGCTATACACACGCACAGAAGAACTTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR CCA 90 bp | ATGAACCAGGAATACTCAGAAGAAGAAAGGGCTCCCGAGTGCCTCAGCCTTCCGTTGACATTGGTATTCTaGAATTCGTCTACTAGGATG | + |
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Preference number: 4 (lower is better) Translates to: MNQEYSEEERAPECLSLPLTLVF*NSSTRM Trigger: CATCCTAGTAGACGAATTCCAGAATACCAATGTCAA...CGGAAGGCTGAGGCACTCGGGAGCCCTTTCTTCTTCTGAGTATTCCTGGTTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR GCA 90 bp | AGATACATAAGTTCTTCTGTGCGTGTGTATAGCTGGAAATTTACACCACCAGAAGCTACAGCGAAGCCCTaGAGCATCTCATCACAGCCA | + |
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Preference number: 4 (lower is better) Translates to: RYISSSVRVYSWKFTPPEATAKP*SISSQP Trigger: TGGCTGTGATGAGATGCTGCAGGGCTTCGCTGTAGC...TTCTGGTGGTGTAAATTTCCAGCTATACACACGCACAGAAGAACTTATGTATCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR CCA 90 bp | AGATACATAAGTTCTTCTGTGCGTGTGTATAGCTGGAAATTTACACCACCAGAAGGCAATCAGGATGTGTaGAGCGGTAAACTTTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: RYISSSVRVYSWKFTPPEGNQDV*SGKLFP Trigger: GGGAAAAAGTTTACCGCTCCACACATCCTGATTGCC...TTCTGGTGGTGTAAATTTCCAGCTATACACACGCACAGAAGAACTTATGTATCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR GCA 90 bp | TACATAAGTTCTTCTGTGCGTGTGTATAGCTGGAAATTTACACCACCAGAAATTGAATTCCGAGTGCACTaGTGTGTTCCACATTACCTT | + |
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Preference number: 4 (lower is better) Translates to: YISSSVRVYSWKFTPPEIEFRVH*CVPHYL Trigger: AAGGTAATGTGGAACACAGCAGTGCACTCGGAATTC...AATTTCTGGTGGTGTAAATTTCCAGCTATACACACGCACAGAAGAACTTATGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR GCA 90 bp | AGATACATAAGTTCTTCTGTGCGTGTGTATAGCTGGAAATTTACACCACCAGAACTCAGTACCTTATCATaGCTGATCATAAGAGATGTC | + |
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Preference number: 4 (lower is better) Translates to: RYISSSVRVYSWKFTPPELSTLS*LIIRDV Trigger: GACATCTCTTATGATCAGGCATGATAAGGTACTGAG...TTCTGGTGGTGTAAATTTCCAGCTATACACACGCACAGAAGAACTTATGTATCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR TCA 90 bp | ATAAGTTCTTCTGTGCGTGTGTATAGCTGGAAATTTACACCACCAGAAATTCCTGTTGGAACTGATGAGTaGATCAAAATTTCTCAGTAC | + |
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Preference number: 4 (lower is better) Translates to: ISSSVRVYSWKFTPPEIPVGTDE*IKISQY Trigger: GTACTGAGAAATTTTGATTCACTCATCAGTTCCAAC...AGGAATTTCTGGTGGTGTAAATTTCCAGCTATACACACGCACAGAAGAACTTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR GCA 90 bp | TACATAAGTTCTTCTGTGCGTGTGTATAGCTGGAAATTTACACCACCAGAAATTTTCTGCTTGATGACATaGCAACTGAATTTACCCTCA | + |
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Preference number: 4 (lower is better) Translates to: YISSSVRVYSWKFTPPEIFCLMT*QLNLPS Trigger: TGAGGGTAAATTCAGTTGGCATGTCATCAAGCAGAA...AATTTCTGGTGGTGTAAATTTCCAGCTATACACACGCACAGAAGAACTTATGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR CCA 90 bp | ATAAGTTCTTCTGTGCGTGTGTATAGCTGGAAATTTACACCACCAGAAATTCCTTCCACATTACCTTTTTaGGTACACATCCAACATTCA | + |
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Preference number: 4 (lower is better) Translates to: ISSSVRVYSWKFTPPEIPSTLPF*VHIQHS Trigger: TGAATGTTGGATGTGTACCCAAAAAGGTAATGTGGA...AGGAATTTCTGGTGGTGTAAATTTCCAGCTATACACACGCACAGAAGAACTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR GCA 90 bp | TACATAAGTTCTTCTGTGCGTGTGTATAGCTGGAAATTTACACCACCAGAAATTATTTGGAATCTTGTTTaGATTCAAACAGTCTATGGG | + |
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Preference number: 4 (lower is better) Translates to: YISSSVRVYSWKFTPPEIIWNLV*IQTVYG Trigger: CCCATAGACTGTTTGAATGCAAACAAGATTCCAAAT...AATTTCTGGTGGTGTAAATTTCCAGCTATACACACGCACAGAAGAACTTATGTA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| 3UTR CAA 72 bp | TACACTAACTTGAGTGTATGTCATGTACATTTAAACTaGGAATGGGGCCAAAGCAAGAAAAACACAACAAAC | + |
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Preference number: 4 (lower is better) Translates to: YTNLSVCHVHLN*EWGQSKKNTTN Trigger: GTTTGTTGTGTTTTTCTTGCTTTGGCCCCATTCCAAGTTTAAATGTACATGACATACACTCAAGTTAGTGTA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS CCA 90 bp | TCACGCAAGTGCCACCCAGCTTGTGACTCTCCACCACCGCGGCCCTaGCGCCGAGCTCCGCCGCCCGCCGCGCGCTGGCCAGCCCGCCGG | + |
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Preference number: 5 (lower is better) Translates to: SRKCHPACDSPPPRP*RRAPPPAARWPARR Trigger: CCGGCGGGCTGGCCAGCGCGCGGCGGGCGGCGGAGCTCGGCGCCAGGGCCGCGGTGGTGGAGAGTCACAAGCTGGGTGGCACTTGCGTGA 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS TCA 90 bp | TACCCGGCCCCCACGATGACGCTGCGGCTGGGCAAGTCCTCCAGCTaGAAGAAGCCATCACTGGTGATCCCCAGGCTGGCGCCTGGGATC | + |
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Preference number: 5 (lower is better) Translates to: YPAPTMTLRLGKSSS*KKPSLVIPRLAPGI Trigger: GATCCCAGGCGCCAGCCTGGGGATCACCAGTGATGGCTTCTTTCAGCTGGAGGACTTGCCCAGCCGCAGCGTCATCGTGGGGGCCGGGTA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS TCA 90 bp | CGCTGCGGCTGGGCAAGTCCTCCAGCTGAAAGAAGCCATCACTGGTaGTCCCCAGGCTGGCGCCTGGGATCTGGCTCTCGTGAGGAACTG | + |
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Preference number: 5 (lower is better) Translates to: RCGWASPPAERSHHW*SPGWRLGSGSREEL Trigger: CAGTTCCTCACGAGAGCCAGATCCCAGGCGCCAGCCTGGGGATCACCAGTGATGGCTTCTTTCAGCTGGAGGACTTGCCCAGCCGCAGCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS TCA 90 bp | CCATCACTGGTGATCCCCAGGCTGGCGCCTGGGATCTGGCTCTCGTaGGGAACTGTGGGCACGCCTCCTGTGGCAATCAGGATGTGTGGA | + |
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Preference number: 5 (lower is better) Translates to: PSLVIPRLAPGIWLS*GTVGTPPVAIRMCG Trigger: TCCACACATCCTGATTGCCACAGGAGGCGTGCCCACAGTTCCTCACGAGAGCCAGATCCCAGGCGCCAGCCTGGGGATCACCAGTGATGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS TCA 90 bp | AGAGGATGCCCGCGATCTCCACAGCAATGTACCCGGCCCCCACGATaGCGCTGCGGCTGGGCAAGTCCTCCAGCTGAAAGAAGCCATCAC | + |
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Preference number: 5 (lower is better) Translates to: RGCPRSPQQCTRPPR*RCGWASPPAERSHH Trigger: GTGATGGCTTCTTTCAGCTGGAGGACTTGCCCAGCCGCAGCGTCATCGTGGGGGCCGGGTACATTGCTGTGGAGATCGCGGGCATCCTCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS CCA 90 bp | CTCGTGAGGAACTGTGGGCACGCCTCCTGTGGCAATCAGGATGTGTaGAGCGGTAAACTTTTTCCCATTGACTTCCACCGTGGGCCGAGG | + |
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Preference number: 5 (lower is better) Translates to: LVRNCGHASCGNQDV*SGKLFPIDFHRGPR Trigger: CCTCGGCCCACGGTGGAAGTCAATGGGAAAAAGTTTACCGCTCCACACATCCTGATTGCCACAGGAGGCGTGCCCACAGTTCCTCACGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS TCA 90 bp | ACAGTCTATGGGCAAGTTTCCGGCCAGCAGCGATTGCAACTGGGGTaGGAAGCGCTTTCCCACAGACGTCTCCCACAGCATAGACGCCTT | + |
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Preference number: 5 (lower is better) Translates to: TVYGQVSGQQRLQLG*EALSHRRLPQHRRL Trigger: AAGGCGTCTATGCTGTGGGAGACGTCTGTGGGAAAGCGCTTCTCACCCCAGTTGCAATCGCTGCTGGCCGGAAACTTGCCCATAGACTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS CCA 90 bp | AGAATTTGGGTCCCGTCCAATGGCCCAGAGCAGGCAGTCAACATCTaGAATCATGGTCGTGGTGGGCTTCCTACCAGGCACGGAAGTCAC | + |
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Preference number: 5 (lower is better) Translates to: RIWVPSNGPEQAVNI*NHGRGGLPTRHGSH Trigger: GTGACTTCCGTGCCTGGTAGGAAGCCCACCACGACCATGATTCCAGATGTTGACTGCCTGCTCTGGGCCATTGGACGGGACCCAAATTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS GCA 90 bp | TTTGCATTCAAACAGTCTATGGGCAAGTTTCCGGCCAGCAGCGATTaGAACTGGGGTGAGAAGCGCTTTCCCACAGACGTCTCCCACAGC | + |
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Preference number: 5 (lower is better) Translates to: FAFKQSMGKFPASSD*NWGEKRFPTDVSHS Trigger: GCTGTGGGAGACGTCTGTGGGAAAGCGCTTCTCACCCCAGTTGCAATCGCTGCTGGCCGGAAACTTGCCCATAGACTGTTTGAATGCAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS CCA 90 bp | TTCAAACAGTCTATGGGCAAGTTTCCGGCCAGCAGCGATTGCAACTaGGGTGAGAAGCGCTTTCCCACAGACGTCTCCCACAGCATAGAC | + |
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Preference number: 5 (lower is better) Translates to: FKQSMGKFPASSDCN*GEKRFPTDVSHSID Trigger: GTCTATGCTGTGGGAGACGTCTGTGGGAAAGCGCTTCTCACCCCAGTTGCAATCGCTGCTGGCCGGAAACTTGCCCATAGACTGTTTGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS TCA 90 bp | GAATGCCAACCACCTTTTCCTCTTTGTTGGCACAAACCATCTTCATaGCGCATTTCGTCTTCCTCGTGGTCACAGCGTGATACATCGGGG | + |
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Preference number: 5 (lower is better) Translates to: ECQPPFPLCWHKPSS*RISSSSWSQRDTSG Trigger: CCCCGATGTATCACGCTGTGACCACGAGGAAGACGAAATGCGTCATGAAGATGGTTTGTGCCAACAAAGAGGAAAAGGTGGTTGGCATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR CAA 90 bp | GAAGAAGAAAGGGCTCCCGAGTGCCTCAGCCTTCCGTCTTGCATGTACTGTCATACCTTTTCCTCTTTGTaGGCACAAACCATCTTCATG | + |
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Preference number: 5 (lower is better) Translates to: EEERAPECLSLPSCMYCHTFSSL*AQTIFM Trigger: CATGAAGATGGTTTGTGCCAACAAAGAGGAAAAGGT...ATGACAGTACATGCAAGACGGAAGGCTGAGGCACTCGGGAGCCCTTTCTTCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS GCA 90 bp | GGTAAACTTTTTCCCATTGACTTCCACCGTGGGCCGAGGACCATCTaGGAATGTTGCATAGCCGTGGATAATTTCTATGTGAGACTTGGT | + |
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Preference number: 5 (lower is better) Translates to: GKLFPIDFHRGPRTI*ECCIAVDNFYVRLG Trigger: ACCAAGTCTCACATAGAAATTATCCACGGCTATGCAACATTCGCAGATGGTCCTCGGCCCACGGTGGAAGTCAATGGGAAAAAGTTTACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS TCA 90 bp | ATTTACCCTCACAGCTTTGAAAGCCGTAATCCACGTGATCGTGCATaGATTCCGAGTGCACTGCTGTGTTCCACATTACCTTTTTGGGTA | + |
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Preference number: 5 (lower is better) Translates to: IYPHSFESRNPRDRA*IPSALLCSTLPFWV Trigger: TACCCAAAAAGGTAATGTGGAACACAGCAGTGCACTCGGAATTCATGCACGATCACGTGGATTACGGCTTTCAAAGCTGTGAGGGTAAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS TCA 90 bp | GTATTCTGGAATTCGTCTACTAGGATGTGGCCCTTTTCATCCGTCTaGATGCCCACTTTATTCAGATTCAGGCCCTTAGAATTTGGGTCC | + |
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Preference number: 5 (lower is better) Translates to: VFWNSSTRMWPFSSV*MPTLFRFRPLEFGS Trigger: GGACCCAAATTCTAAGGGCCTGAATCTGAATAAAGTGGGCATTCAGACGGATGAAAAGGGCCACATCCTAGTAGACGAATTCCAGAATAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR CAA 90 bp | TACATAAGTTCTTCTGTGCGTGTGTATAGCTGGAAATTTACACCACCAGAAATTATCATAAGAGATGTCTaGGAGCCCAGGGCAGAGAGG | + |
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Preference number: 5 (lower is better) Translates to: YISSSVRVYSWKFTPPEIIIRDV*EPRAER Trigger: CCTCTCTGCCCTGGGCTCCAAGACATCTCTTATGAT...AATTTCTGGTGGTGTAAATTTCCAGCTATACACACGCACAGAAGAACTTATGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR CAA 90 bp | TACATAAGTTCTTCTGTGCGTGTGTATAGCTGGAAATTTACACCACCAGAAATTTTTACCCTCACAGCTTaGAAAGCCGTAATCCACGTG | + |
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Preference number: 5 (lower is better) Translates to: YISSSVRVYSWKFTPPEIFTLTA*KAVIHV Trigger: CACGTGGATTACGGCTTTCAAAGCTGTGAGGGTAAA...AATTTCTGGTGGTGTAAATTTCCAGCTATACACACGCACAGAAGAACTTATGTA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS-3UTR CAA 90 bp | ATAAGTTCTTCTGTGCGTGTGTATAGCTGGAAATTTACACCACCAGAAATTCCTTTCCACATTACCTTTTaGGGTACACATCCAACATTC | + |
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Preference number: 5 (lower is better) Translates to: ISSSVRVYSWKFTPPEIPFHITF*GTHPTF Trigger: GAATGTTGGATGTGTACCCAAAAAGGTAATGTGGAA...AGGAATTTCTGGTGGTGTAAATTTCCAGCTATACACACGCACAGAAGAACTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS TCA 72 bp | GTGATCCCCAGGCTGGCGCCTGGGATCTGGCTCTCGTaGGGAACTGTGGGCACGCCTCCTGTGGCAATCAGG | + |
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Preference number: 6 (lower is better) Translates to: VIPRLAPGIWLS*GTVGTPPVAIR Trigger: CCTGATTGCCACAGGAGGCGTGCCCACAGTTCCTCACGAGAGCCAGATCCCAGGCGCCAGCCTGGGGATCAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS TCA 72 bp | ACACATCCAACATTCACGCAAGTGCCACCCAGCTTGTaGCTCTCCACCACCGCGGCCCTGGCGCCGAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: THPTFTQVPPSL*LSTTAALAPSS Trigger: GGAGCTCGGCGCCAGGGCCGCGGTGGTGGAGAGTCACAAGCTGGGTGGCACTTGCGTGAATGTTGGATGTGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS TCA 72 bp | CCCACGATGACGCTGCGGCTGGGCAAGTCCTCCAGCTaGAAGAAGCCATCACTGGTGATCCCCAGGCTGGCG | + |
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Preference number: 6 (lower is better) Translates to: PTMTLRLGKSSS*KKPSLVIPRLA Trigger: CGCCAGCCTGGGGATCACCAGTGATGGCTTCTTTCAGCTGGAGGACTTGCCCAGCCGCAGCGTCATCGTGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS TCA 72 bp | CCGCGATCTCCACAGCAATGTACCCGGCCCCCACGATaGCGCTGCGGCTGGGCAAGTCCTCCAGCTGAAAGA | + |
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Preference number: 6 (lower is better) Translates to: PRSPQQCTRPPR*RCGWASPPAER Trigger: TCTTTCAGCTGGAGGACTTGCCCAGCCGCAGCGTCATCGTGGGGGCCGGGTACATTGCTGTGGAGATCGCGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS CCA 72 bp | GGCTGGCGCCTGGGATCTGGCTCTCGTGAGGAACTGTaGGCACGCCTCCTGTGGCAATCAGGATGTGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: GWRLGSGSREEL*ARLLWQSGCVE Trigger: CTCCACACATCCTGATTGCCACAGGAGGCGTGCCCACAGTTCCTCACGAGAGCCAGATCCCAGGCGCCAGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS CCA 72 bp | AAAGAAGCCATCACTGGTGATCCCCAGGCTGGCGCCTaGGATCTGGCTCTCGTGAGGAACTGTGGGCACGCC | + |
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Preference number: 6 (lower is better) Translates to: KEAITGDPQAGA*DLALVRNCGHA Trigger: GGCGTGCCCACAGTTCCTCACGAGAGCCAGATCCCAGGCGCCAGCCTGGGGATCACCAGTGATGGCTTCTTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS TCA 72 bp | GGGCAAGTTTCCGGCCAGCAGCGATTGCAACTGGGGTaGGAAGCGCTTTCCCACAGACGTCTCCCACAGCAT | + |
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Preference number: 6 (lower is better) Translates to: GQVSGQQRLQLG*EALSHRRLPQH Trigger: ATGCTGTGGGAGACGTCTGTGGGAAAGCGCTTCTCACCCCAGTTGCAATCGCTGCTGGCCGGAAACTTGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS CCA 72 bp | TCTATGGGCAAGTTTCCGGCCAGCAGCGATTGCAACTaGGGTGAGAAGCGCTTTCCCACAGACGTCTCCCAC | + |
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Preference number: 6 (lower is better) Translates to: SMGKFPASSDCN*GEKRFPTDVSH Trigger: GTGGGAGACGTCTGTGGGAAAGCGCTTCTCACCCCAGTTGCAATCGCTGCTGGCCGGAAACTTGCCCATAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS CCA 72 bp | CCCAGAGCAGGCAGTCAACATCTGGAATCATGGTCGTaGTGGGCTTCCTACCAGGCACGGAAGTCACCACTT | + |
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Preference number: 6 (lower is better) Translates to: PRAGSQHLESWS*WASYQARKSPL Trigger: AAGTGGTGACTTCCGTGCCTGGTAGGAAGCCCACCACGACCATGATTCCAGATGTTGACTGCCTGCTCTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS CCA 72 bp | GATGAATGGCAACTGTGTTGTCGAAGTCGGCCTTGGTaGCCCCCATTTTCACCGCTACAGCGAAGCCCTGCA | + |
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Preference number: 6 (lower is better) Translates to: DEWQLCCRSRPW*PPFSPLQRSPA Trigger: TGCAGGGCTTCGCTGTAGCGGTGAAAATGGGGGCCACCAAGGCCGACTTCGACAACACAGTTGCCATTCATC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS GCA 72 bp | AAACAGTCTATGGGCAAGTTTCCGGCCAGCAGCGATTaGAACTGGGGTGAGAAGCGCTTTCCCACAGACGTC | + |
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Preference number: 6 (lower is better) Translates to: KQSMGKFPASSD*NWGEKRFPTDV Trigger: GACGTCTGTGGGAAAGCGCTTCTCACCCCAGTTGCAATCGCTGCTGGCCGGAAACTTGCCCATAGACTGTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS CCA 72 bp | AGAGCAGGCAGTCAACATCTGGAATCATGGTCGTGGTaGGCTTCCTACCAGGCACGGAAGTCACCACTTGGA | + |
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Preference number: 6 (lower is better) Translates to: RAGSQHLESWSW*ASYQARKSPLG Trigger: TCCAAGTGGTGACTTCCGTGCCTGGTAGGAAGCCCACCACGACCATGATTCCAGATGTTGACTGCCTGCTCT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS CAA 72 bp | CTCAGTACCTTATCATGCCTGATCATAAGAGATGTCTaGGAGCCCAGGGCAGAGAGGATGCCCGCGATCTCC | + |
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Preference number: 6 (lower is better) Translates to: LSTLSCLIIRDV*EPRAERMPAIS Trigger: GGAGATCGCGGGCATCCTCTCTGCCCTGGGCTCCAAGACATCTCTTATGATCAGGCATGATAAGGTACTGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS CCA 72 bp | AACTGTGGGCACGCCTCCTGTGGCAATCAGGATGTGTaGAGCGGTAAACTTTTTCCCATTGACTTCCACCGT | + |
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Preference number: 6 (lower is better) Translates to: NCGHASCGNQDV*SGKLFPIDFHR Trigger: ACGGTGGAAGTCAATGGGAAAAAGTTTACCGCTCCACACATCCTGATTGCCACAGGAGGCGTGCCCACAGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS CAA 72 bp | GCAATCAGGATGTGTGGAGCGGTAAACTTTTTCCCATaGACTTCCACCGTGGGCCGAGGACCATCTGCGAAT | + |
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Preference number: 6 (lower is better) Translates to: AIRMCGAVNFFP*TSTVGRGPSAN Trigger: ATTCGCAGATGGTCCTCGGCCCACGGTGGAAGTCAATGGGAAAAAGTTTACCGCTCCACACATCCTGATTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS CCA 72 bp | AATGCCCACTTTATTCAGATTCAGGCCCTTAGAATTTaGGTCCCGTCCAATGGCCCAGAGCAGGCAGTCAAC | + |
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Preference number: 6 (lower is better) Translates to: NAHFIQIQALRI*VPSNGPEQAVN Trigger: GTTGACTGCCTGCTCTGGGCCATTGGACGGGACCCAAATTCTAAGGGCCTGAATCTGAATAAAGTGGGCATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS CAA 90 bp | TCAAAATTTCTCAGTACCTTATCATGCCTGATCATAAGAGATGTCTaGGAGCCCAGGGCAGAGAGGATGCCCGCGATCTCCACAGCAATG | + |
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Preference number: 6 (lower is better) Translates to: SKFLSTLSCLIIRDV*EPRAERMPAISTAM Trigger: CATTGCTGTGGAGATCGCGGGCATCCTCTCTGCCCTGGGCTCCAAGACATCTCTTATGATCAGGCATGATAAGGTACTGAGAAATTTTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS TCA 72 bp | CACAGCTTTGAAAGCCGTAATCCACGTGATCGTGCATaGATTCCGAGTGCACTGCTGTGTTCCACATTACCT | + |
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Preference number: 6 (lower is better) Translates to: HSFESRNPRDRA*IPSALLCSTLP Trigger: AGGTAATGTGGAACACAGCAGTGCACTCGGAATTCATGCACGATCACGTGGATTACGGCTTTCAAAGCTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS TCA 72 bp | CCACCTTTTCCTCTTTGTTGGCACAAACCATCTTCATaGCGCATTTCGTCTTCCTCGTGGTCACAGCGTGAT | + |
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Preference number: 6 (lower is better) Translates to: PPFPLCWHKPSS*RISSSSWSQRD Trigger: ATCACGCTGTGACCACGAGGAAGACGAAATGCGTCATGAAGATGGTTTGTGCCAACAAAGAGGAAAAGGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS CAA 90 bp | CCTTTTCTGCTTGATGACATGCCAACTGAATTTACCCTCACAGCTTaGAAAGCCGTAATCCACGTGATCGTGCATGAATTCCGAGTGCAC | + |
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Preference number: 6 (lower is better) Translates to: PFLLDDMPTEFTLTA*KAVIHVIVHEFRVH Trigger: GTGCACTCGGAATTCATGCACGATCACGTGGATTACGGCTTTCAAAGCTGTGAGGGTAAATTCAGTTGGCATGTCATCAAGCAGAAAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS TCA 72 bp | CTTTCCCACAGACGTCTCCCACAGCATAGACGCCTTTaGCATTGGTATTCTGGAATTCGTCTACTAGGATGT | + |
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Preference number: 6 (lower is better) Translates to: LSHRRLPQHRRL*HWYSGIRLLGC Trigger: ACATCCTAGTAGACGAATTCCAGAATACCAATGTCAAAGGCGTCTATGCTGTGGGAGACGTCTGTGGGAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS GCA 72 bp | GTAATCCACGTGATCGTGCATGAATTCCGAGTGCACTaGTGTGTTCCACATTACCTTTTTGGGTACACATCC | + |
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Preference number: 6 (lower is better) Translates to: VIHVIVHEFRVH*CVPHYLFGYTS Trigger: GGATGTGTACCCAAAAAGGTAATGTGGAACACAGCAGTGCACTCGGAATTCATGCACGATCACGTGGATTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS CCA 72 bp | TCTAATTTGGAATCTTGTTTGCATTCAAACAGTCTATaGGCAAGTTTCCGGCCAGCAGCGATTGCAACTGGG | + |
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Preference number: 6 (lower is better) Translates to: SNLESCLHSNSL*ASFRPAAIATG Trigger: CCCAGTTGCAATCGCTGCTGGCCGGAAACTTGCCCATAGACTGTTTGAATGCAAACAAGATTCCAAATTAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS CAA 72 bp | CTTGATGACATGCCAACTGAATTTACCCTCACAGCTTaGAAAGCCGTAATCCACGTGATCGTGCATGAATTC | + |
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Preference number: 6 (lower is better) Translates to: LDDMPTEFTLTA*KAVIHVIVHEF Trigger: GAATTCATGCACGATCACGTGGATTACGGCTTTCAAAGCTGTGAGGGTAAATTCAGTTGGCATGTCATCAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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| CDS TCA 72 bp | ATTCTCCAGTTCCTCGGTGCAGTTGGAACTGATGAGTaGATCAAAATTTCTCAGTACCTTATCATGCCTGAT | + |
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Preference number: 6 (lower is better) Translates to: ILQFLGAVGTDE*IKISQYLIMPD Trigger: ATCAGGCATGATAAGGTACTGAGAAATTTTGATTCACTCATCAGTTCCAACTGCACCGAGGAACTGGAGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033992.9 |
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