Pregenerated sensors for GSPT2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071723Ensembl transcript IDs: ENSMUST00000096368.4, ENSMUST00000137033.2
Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAAGCATGGCAGCAAACAGCAGGCATGGCAACTGGAGCAGGAAGCTaGGAGCTCACATCCTCAACTGAAAGCAGGAAGCAGAGAGAGCAC | + |
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Preference number: 1 (lower is better) Translates to: EAWQQTAGMATGAGS*ELTSSTESRKQREH Trigger: GTGCTCTCTCTGCTTCCTGCTTTCAGTTGAGGATGTGAGCTCTCAGCTTCCTGCTCCAGTTGCCATGCCTGCTGTTTGCTGCCATGCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR CCA 90 bp | AGGGTTTATTTAGGCTCACAGTTCCAGAGAGATAAGCGATCATCATaGCAGGGAAGCATGGCAGCAAACAGCAGGCATGGCAACTGGAGC | + |
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Preference number: 1 (lower is better) Translates to: RVYLGSQFQRDKRSS*QGSMAANSRHGNWS Trigger: GCTCCAGTTGCCATGCCTGCTGTTTGCTGCCATGCTTCCCTGCCATGATGATCGCTTATCTCTCTGGAACTGTGAGCCTAAATAAACCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR GCA 90 bp | CACTTCATGGCCTCCACAGGCTCATGGTTAGATCATCATTCGAACTaGATCCAGTCAAGCTTAAAAATGTCCCCAGTCTTTAATGGCCCC | + |
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Preference number: 1 (lower is better) Translates to: HFMASTGSWLDHHSN*IQSSLKMSPVFNGP Trigger: GGGGCCATTAAAGACTGGGGACATTTTTAAGCTTGACTGGATGCAGTTCGAATGATGATCTAACCATGAGCCTGTGGAGGCCATGAAGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR CCA 90 bp | TTACTGATTTGTCCAAGGAAGCAGAGTGCTATAGAGGGAGGAAACTaGAGTATGCATTCAGGAGTGACACGACTGAAGTCTCAACATGAG | + |
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Preference number: 1 (lower is better) Translates to: LLICPRKQSAIEGGN*SMHSGVTRLKSQHE Trigger: CTCATGTTGAGACTTCAGTCGTGTCACTCCTGAATGCATACTCCAGTTTCCTCCCTCTATAGCACTCTGCTTCCTTGGACAAATCAGTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| 3UTR GCA 90 bp | TTTCTCTGCAAAATATGGGCACAAGTTTGTCAATGGGCAGTAGGTTaGGGTCAATCTTTCACACATTATGGTGCAGAGGCATCAAAAGAG | + |
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Preference number: 1 (lower is better) Translates to: FLCKIWAQVCQWAVG*GQSFTHYGAEASKE Trigger: CTCTTTTGATGCCTCTGCACCATAATGTGTGAAAGATTGACCGCAACCTACTGCCCATTGACAAACTTGTGCCCATATTTTGCAGAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| 3UTR TCA 90 bp | TCTGTTGCTGTGCTAAAACACCATGACCAGAAGCAACTTACAGAATaGAGGGTTTATTTAGGCTCACAGTTCCAGAGAGATAAGCGATCA | + |
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Preference number: 1 (lower is better) Translates to: SVAVLKHHDQKQLTE*RVYLGSQFQRDKRS Trigger: TGATCGCTTATCTCTCTGGAACTGTGAGCCTAAATAAACCCTTCATTCTGTAAGTTGCTTCTGGTCATGGTGTTTTAGCACAGCAACAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR TCA 90 bp | GTTTCCAACCACTGGTTACTTTTCTGTTGCTGTGCTAAAACACCATaGCCAGAAGCAACTTACAGAATGAAGGGTTTATTTAGGCTCACA | + |
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Preference number: 1 (lower is better) Translates to: VSNHWLLFCCCAKTP*PEATYRMKGLFRLT Trigger: TGTGAGCCTAAATAAACCCTTCATTCTGTAAGTTGCTTCTGGTCATGGTGTTTTAGCACAGCAACAGAAAAGTAACCAGTGGTTGGAAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR TCA 90 bp | TTTATTTACATGTTAGTTATCTTCAACATATACACACACCAACACTaGCTGTTCCCCACAGAACAAAGGATGTCTAGATATCCCAAACGG | + |
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Preference number: 1 (lower is better) Translates to: FIYMLVIFNIYTHQH*LFPTEQRMSRYPKR Trigger: CCGTTTGGGATATCTAGACATCCTTTGTTCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAGATAACTAACATGTAAATAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| 3UTR-3UTR CCA 90 bp | TCTCCAAGAAGGCCACGCCTCCTAATCGTCCCTACCAGCACCACCACCTGGGAAAAAATAGCACAGAAATaGGCTCTAGTCCAACTGCTA | + |
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Preference number: 2 (lower is better) Translates to: SPRRPRLLIVPTSTTTWEKIAQK*ALVQLL Trigger: TAGCAGTTGGACTAGAGCCCATTTCTGTGCTATTTT...TTCCCAGGTGGTGGTGCTGGTAGGGACGATTAGGAGGCGTGGCCTTCTTGGAGA 51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR-3UTR CCA 90 bp | CTTAAAGCATCCAACCACTTTTCTAATCCAAAGTCTCGGTCTTCCATATTCCTCAGCAAACAGCAGGCATaGCAACTGGAGCAGGAAGCT | + |
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Preference number: 2 (lower is better) Translates to: LKASNHFSNPKSRSSIFLSKQQA*QLEQEA Trigger: AGCTTCCTGCTCCAGTTGCCATGCCTGCTGTTTGCT...GAGGAATATGGAAGACCGAGACTTTGGATTAGAAAAGTGGTTGGATGCTTTAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR-3UTR TCA 90 bp | ATGAGCCTAGAGGAGTCATTCTTTATTCAAGCCATCACATTCCACTTCATGGCCAATATTGTTCCCTTCTaGAACCTTGTGAGCCAGACA | + |
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Preference number: 2 (lower is better) Translates to: MSLEESFFIQAITFHFMANIVPF*NLVSQT Trigger: TGTCTGGCTCACAAGGTTTCAGAAGGGAACAATATT...GGCCATGAAGTGGAATGTGATGGCTTGAATAAAGAATGACTCCTCTAGGCTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR-3UTR GCA 90 bp | AGGAAGCAGAGTGCTATAGAGGGAGGAAACTGGAGTATGCATTCAGGAGTGACATTTCACACATTATGGTaGAGAGGCATCAAAAGAGAT | + |
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Preference number: 2 (lower is better) Translates to: RKQSAIEGGNWSMHSGVTFHTLW*RGIKRD Trigger: ATCTCTTTTGATGCCTCTGCACCATAATGTGTGAAA...TGTCACTCCTGAATGCATACTCCAGTTTCCTCCCTCTATAGCACTCTGCTTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| 3UTR-3UTR CCA 90 bp | ATGAGCCTAGAGGAGTCATTCTTTATTCAAGCCATCACATTCCACTTCATGGCCCTGGTTTCCAACCACTaGTTACTTTTCTGTTGCTGT | + |
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Preference number: 2 (lower is better) Translates to: MSLEESFFIQAITFHFMALVSNH*LLFCCC Trigger: ACAGCAACAGAAAAGTAACCAGTGGTTGGAAACCAG...GGCCATGAAGTGGAATGTGATGGCTTGAATAAAGAATGACTCCTCTAGGCTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR-3UTR CCA 90 bp | CATGTTAGTTATCTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAATAGAGGGAGGAAACTaGAGTATGCATTCAGGAGTG | + |
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Preference number: 2 (lower is better) Translates to: HVSYLQHIHTPTLTVPHRIEGGN*SMHSGV Trigger: CACTCCTGAATGCATACTCCAGTTTCCTCCCTCTAT...TCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAGATAACTAACATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| 3UTR-3UTR CCA 90 bp | CTTCTCTCTGTAGCAGAATCAACAGAAAATAGATCCAATGCCTTAATCAGAGATGATAAGCGATCATCATaGCAGGGAAGCATGGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: LLSVAESTENRSNALIRDDKRSS*QGSMAA Trigger: TGCTGCCATGCTTCCCTGCCATGATGATCGCTTATC...ATCTCTGATTAAGGCATTGGATCTATTTTCTGTTGATTCTGCTACAGAGAGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR-3UTR CCA 90 bp | CTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAACAAAGGATGTCTTTCTCTGCAAAATATaGGCACAAGTTTGTCAATGG | + |
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Preference number: 2 (lower is better) Translates to: LQHIHTPTLTVPHRTKDVFLCKI*AQVCQW Trigger: CCATTGACAAACTTGTGCCCATATTTTGCAGAGAAA...GACATCCTTTGTTCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| 3UTR-3UTR TCA 90 bp | ACTGTCTGCTTAAAGCATCCAACCACTTTTCTAATCCAAAGTCTCGGTCTTCCAAAGCAACTTACAGAATaGAGGGTTTATTTAGGCTCA | + |
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Preference number: 2 (lower is better) Translates to: TVCLKHPTTFLIQSLGLPKQLTE*RVYLGS Trigger: TGAGCCTAAATAAACCCTTCATTCTGTAAGTTGCTT...TGGAAGACCGAGACTTTGGATTAGAAAAGTGGTTGGATGCTTTAAGCAGACAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR-3UTR CCA 90 bp | AGTCCACCATCCAAAGTCTCTTATGAGACTCAAGGCAATCTCTTAATTGTAGCTAAAGAAATATGGTCATaGTCTACACAGCAACAGCCT | + |
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Preference number: 2 (lower is better) Translates to: SPPSKVSYETQGNLLIVAKEIWS*STQQQP Trigger: AGGCTGTTGCTGTGTAGACCATGACCATATTTCTTT...AGCTACAATTAAGAGATTGCCTTGAGTCTCATAAGAGACTTTGGATGGTGGACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR-3UTR GCA 90 bp | CATGTTAGTTATCTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAGCTGTGAAATTTCTCTaGAAAATATGGGCACAAGTT | + |
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Preference number: 2 (lower is better) Translates to: HVSYLQHIHTPTLTVPHRAVKFL*KIWAQV Trigger: AACTTGTGCCCATATTTTGCAGAGAAATTTCACAGC...TCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAGATAACTAACATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| 3UTR-3UTR GCA 90 bp | TATCTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAACAAAGGATCAACACGTGGATTTTTaGTGTGAAATTTCTCTGCAA | + |
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Preference number: 2 (lower is better) Translates to: YLQHIHTPTLTVPHRTKDQHVDF*CEISLQ Trigger: TTGCAGAGAAATTTCACAGCAAAAATCCACGTGTTG...ATCCTTTGTTCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAGATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| 3UTR CCA 72 bp | CCACGCCTCCTAATCGTCCCTACCAGCACCACCACCTaGGAATCGAGTGGTCAAAGGCATGAGCCTAGAGGA | + |
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Preference number: 3 (lower is better) Translates to: PRLLIVPTSTTT*ESSGQRHEPRG Trigger: TCCTCTAGGCTCATGCCTTTGACCACTCGATTCCCAGGTGGTGGTGCTGGTAGGGACGATTAGGAGGCGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR CCA 72 bp | ATCATGGCAGGGAAGCATGGCAGCAAACAGCAGGCATaGCAACTGGAGCAGGAAGCTGAGAGCTCACATCCT | + |
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Preference number: 3 (lower is better) Translates to: IMAGKHGSKQQA*QLEQEAESSHP Trigger: AGGATGTGAGCTCTCAGCTTCCTGCTCCAGTTGCCATGCCTGCTGTTTGCTGCCATGCTTCCCTGCCATGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR TCA 72 bp | CAGCAAACAGCAGGCATGGCAACTGGAGCAGGAAGCTaGGAGCTCACATCCTCAACTGAAAGCAGGAAGCAG | + |
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Preference number: 3 (lower is better) Translates to: QQTAGMATGAGS*ELTSSTESRKQ Trigger: CTGCTTCCTGCTTTCAGTTGAGGATGTGAGCTCTCAGCTTCCTGCTCCAGTTGCCATGCCTGCTGTTTGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR CCA 72 bp | CAGAGAAGCCCAACAGCAAAAGGCAAGCAGGGCAACTaGATGCAGAAGCTGATAGCTCACACACTCTACTAC | + |
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Preference number: 3 (lower is better) Translates to: QRSPTAKGKQGN*MQKLIAHTLYY Trigger: GTAGTAGAGTGTGTGAGCTATCAGCTTCTGCATCCAGTTGCCCTGCTTGCCTTTTGCTGTTGGGCTTCTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR TCA 72 bp | AACTGGAGCAGGAAGCTGAGAGCTCACATCCTCAACTaGAAGCAGGAAGCAGAGAGAGCACCAAGACAGAAA | + |
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Preference number: 3 (lower is better) Translates to: NWSRKLRAHILN*KQEAERAPRQK Trigger: TTTCTGTCTTGGTGCTCTCTCTGCTTCCTGCTTTCAGTTGAGGATGTGAGCTCTCAGCTTCCTGCTCCAGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR CCA 72 bp | TGTCCAAGGAAGCAGAGTGCTATAGAGGGAGGAAACTaGAGTATGCATTCAGGAGTGACACGACTGAAGTCT | + |
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Preference number: 3 (lower is better) Translates to: CPRKQSAIEGGN*SMHSGVTRLKS Trigger: AGACTTCAGTCGTGTCACTCCTGAATGCATACTCCAGTTTCCTCCCTCTATAGCACTCTGCTTCCTTGGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| 3UTR GCA 72 bp | AAAAACATGTCAGAAGGGGGTCAAGGTCTAGACACATaGAACAGTTTCCTGGCTAGAATTCCCGCTCTAGTT | + |
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Preference number: 3 (lower is better) Translates to: KNMSEGGQGLDT*NSFLARIPALV Trigger: AACTAGAGCGGGAATTCTAGCCAGGAAACTGTTGCATGTGTCTAGACCTTGACCCCCTTCTGACATGTTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR GCA 72 bp | GCCTCCACAGGCTCATGGTTAGATCATCATTCGAACTaGATCCAGTCAAGCTTAAAAATGTCCCCAGTCTTT | + |
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Preference number: 3 (lower is better) Translates to: ASTGSWLDHHSN*IQSSLKMSPVF Trigger: AAAGACTGGGGACATTTTTAAGCTTGACTGGATGCAGTTCGAATGATGATCTAACCATGAGCCTGTGGAGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR CCA 72 bp | ATATGGTCATGGTCTACACAGCAACAGCCTACTCTCTaGTTTCCAACCACTGGTTACTTTTCTGTTGCTGTG | + |
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Preference number: 3 (lower is better) Translates to: IWSWSTQQQPTL*FPTTGYFSVAV Trigger: CACAGCAACAGAAAAGTAACCAGTGGTTGGAAACCAGAGAGTAGGCTGTTGCTGTGTAGACCATGACCATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR GCA 72 bp | ACTGCATTCTGCATTACTCTCCGAACTAATCTTCCATaGTCCGACTGTCTGCTTAAAGCATCCAACCACTTT | + |
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Preference number: 3 (lower is better) Translates to: TAFCITLRTNLP*SDCLLKASNHF Trigger: AAAGTGGTTGGATGCTTTAAGCAGACAGTCGGAGCATGGAAGATTAGTTCGGAGAGTAATGCAGAATGCAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR GCA 72 bp | ATTCTTAGGAAAAGGGCAGAAGACACCCAGTTTCTTTaGCAAAATAGCACAGAAATGGGCTCTAGTCCAACT | + |
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Preference number: 3 (lower is better) Translates to: ILRKRAEDTQFL*QNSTEMGSSPT Trigger: AGTTGGACTAGAGCCCATTTCTGTGCTATTTTGGCAAAGAAACTGGGTGTCTTCTGCCCTTTTCCTAAGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR-3UTR CAA 90 bp | ACTGTCTGCTTAAAGCATCCAACCACTTTTCTAATCCAAAGTCTCGGTCTTCCAAAAGCTATTACTGATTaGTCCAAGGAAGCAGAGTGC | + |
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Preference number: 3 (lower is better) Translates to: TVCLKHPTTFLIQSLGLPKAITD*SKEAEC Trigger: GCACTCTGCTTCCTTGGACAAATCAGTAATAGCTTT...TGGAAGACCGAGACTTTGGATTAGAAAAGTGGTTGGATGCTTTAAGCAGACAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR TCA 72 bp | GTGCTAAAACACCATGACCAGAAGCAACTTACAGAATaGAGGGTTTATTTAGGCTCACAGTTCCAGAGAGAT | + |
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Preference number: 3 (lower is better) Translates to: VLKHHDQKQLTE*RVYLGSQFQRD Trigger: ATCTCTCTGGAACTGTGAGCCTAAATAAACCCTTCATTCTGTAAGTTGCTTCTGGTCATGGTGTTTTAGCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR GCA 72 bp | TTACTCTCCGAACTAATCTTCCATGCTCCGACTGTCTaGTTAAAGCATCCAACCACTTTTCTAATCCAAAGT | + |
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Preference number: 3 (lower is better) Translates to: LLSELIFHAPTV*LKHPTTFLIQS Trigger: ACTTTGGATTAGAAAAGTGGTTGGATGCTTTAAGCAGACAGTCGGAGCATGGAAGATTAGTTCGGAGAGTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR CCA 72 bp | AAGACACCCAGTTTCTTTGCCAAAATAGCACAGAAATaGGCTCTAGTCCAACTGCTAATATTGTTCCCTTCT | + |
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Preference number: 3 (lower is better) Translates to: KTPSFFAKIAQK*ALVQLLILFPS Trigger: AGAAGGGAACAATATTAGCAGTTGGACTAGAGCCCATTTCTGTGCTATTTTGGCAAAGAAACTGGGTGTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| 3UTR-3UTR CAA 90 bp | CATGTTAGTTATCTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAAAAGCTATTACTGATTaGTCCAAGGAAGCAGAGTGC | + |
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Preference number: 3 (lower is better) Translates to: HVSYLQHIHTPTLTVPHRKAITD*SKEAEC Trigger: GCACTCTGCTTCCTTGGACAAATCAGTAATAGCTTT...TCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAGATAACTAACATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| 3UTR TCA 72 bp | ATGTTAGTTATCTTCAACATATACACACACCAACACTaGCTGTTCCCCACAGAACAAAGGATGTCTAGATAT | + |
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Preference number: 3 (lower is better) Translates to: MLVIFNIYTHQH*LFPTEQRMSRY Trigger: ATATCTAGACATCCTTTGTTCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAGATAACTAACAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR TCA 90 bp | AAGCATGGCAGCAAACAGCAGGCATGGCAACTGGAGCAGGAAGCTGAGAGCTCAGCGTGGATGTTGAGCTaGCTGCTGAAGGCCAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: KHGSKQQAWQLEQEAESSAWMLS*LLKAKL Trigger: CAGCTTGGCCTTCAGCAGTCAGCTCAACATCCACGC...TGAGCTCTCAGCTTCCTGCTCCAGTTGCCATGCCTGCTGTTTGCTGCCATGCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| CDS-3UTR CCA 90 bp | GCTCAAGAAAAACATGTCAGAAGGGGGTCAAGGTCTAGACACATGCAACAGTTTGTGGGGGCGGGCGGCTaGGCCGATCCAGGCAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: AQEKHVRRGSRSRHMQQFVGAGG*ADPGRK Trigger: CTTCCTGCCTGGATCGGCCCAGCCGCCCGCCCCCAC...AAACTGTTGCATGTGTCTAGACCTTGACCCCCTTCTGACATGTTTTTCTTGAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| CDS-3UTR CCA 90 bp | TATCTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAACAAAGGATGTGGGGGCGGGCGGCTaGGCCGATCCAGGCAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: YLQHIHTPTLTVPHRTKDVGAGG*ADPGRK Trigger: CTTCCTGCCTGGATCGGCCCAGCCGCCCGCCCCCAC...ATCCTTTGTTCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAGATA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR GCA 90 bp | AGGAAGCAGAGTGCTATAGAGGGAGGAAACTGGAGTATGCATTCAGGAGTGACAAAGGCCAAGCTGAGATaGTTGCGCTGGGCCTCGGCT | + |
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Preference number: 4 (lower is better) Translates to: RKQSAIEGGNWSMHSGVTKAKLR*LRWASA Trigger: AGCCGAGGCCCAGCGCAAGCATCTCAGCTTGGCCTT...TGTCACTCCTGAATGCATACTCCAGTTTCCTCCCTCTATAGCACTCTGCTTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR GCA 90 bp | AGGAAGCAGAGTGCTATAGAGGGAGGAAACTGGAGTATGCATTCAGGAGTGACACGGCACGAACTCCGCTaGGCTTACGCTAGGCACGAA | + |
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Preference number: 4 (lower is better) Translates to: RKQSAIEGGNWSMHSGVTRHELR*AYARHE Trigger: TTCGTGCCTAGCGTAAGCGCAGCGGAGTTCGTGCCG...TGTCACTCCTGAATGCATACTCCAGTTTCCTCCCTCTATAGCACTCTGCTTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR CCA 90 bp | CTCACACACTCTACTACAAGTATGAAGCAGAGAAAGCAAACTGGACATGAGGTAAGGTTTCGTCGCAGCTaGAGGCTGTGGGGGCGGGCG | + |
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Preference number: 4 (lower is better) Translates to: LTHSTTSMKQRKQTGHEVRFRRS*RLWGRA Trigger: CGCCCGCCCCCACAGCCTCCAGCTGCGACGAAACCT...TACCTCATGTCCAGTTTGCTTTCTCTGCTTCATACTTGTAGTAGAGTGTGTGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| CDS-3UTR CCA 90 bp | CATGTTAGTTATCTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAAGGTTTCGTCGCAGCTaGAGGCTGTGGGGGCGGGCG | + |
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Preference number: 4 (lower is better) Translates to: HVSYLQHIHTPTLTVPHRRFRRS*RLWGRA Trigger: CGCCCGCCCCCACAGCCTCCAGCTGCGACGAAACCT...TCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAGATAACTAACATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR GCA 90 bp | AGGAAGCAGAGTGCTATAGAGGGAGGAAACTGGAGTATGCATTCAGGAGTGACATTCTTCTGGGGGCCCTaGATCTCCCAAAGAAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: RKQSAIEGGNWSMHSGVTFFWGP*ISQRSL Trigger: GAGGCTTCTTTGGGAGATGCAGGGCCCCCAGAAGAA...TGTCACTCCTGAATGCATACTCCAGTTTCCTCCCTCTATAGCACTCTGCTTCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR GCA 90 bp | CTCACACACTCTACTACAAGTATGAAGCAGAGAAAGCAAACTGGACATGAGGTACGGCACGAACTCCGCTaGGCTTACGCTAGGCACGAA | + |
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Preference number: 4 (lower is better) Translates to: LTHSTTSMKQRKQTGHEVRHELR*AYARHE Trigger: TTCGTGCCTAGCGTAAGCGCAGCGGAGTTCGTGCCG...TACCTCATGTCCAGTTTGCTTTCTCTGCTTCATACTTGTAGTAGAGTGTGTGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| CDS-3UTR TCA 90 bp | CTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAACAAAGGATGTCCCTCCATCACTTCCTTaGCACTTTCTTCTGGGGGCC | + |
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Preference number: 4 (lower is better) Translates to: LQHIHTPTLTVPHRTKDVPPSLP*HFLLGA Trigger: GGCCCCCAGAAGAAAGTGTCAAGGAAGTGATGGAGG...GACATCCTTTGTTCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR CCA 90 bp | CTGATTTGTCCAAGGAAGCAGAGTGCTATAGAGGGAGGAAACTGGAGTATGCATCTTGACACTTTCTTCTaGGGGCCCTGCATCTCCCAA | + |
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Preference number: 4 (lower is better) Translates to: LICPRKQSAIEGGNWSMHLDTFF*GPCISQ Trigger: TTGGGAGATGCAGGGCCCCCAGAAGAAAGTGTCAAG...ATGCATACTCCAGTTTCCTCCCTCTATAGCACTCTGCTTCCTTGGACAAATCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR CCA 90 bp | CTGATTTGTCCAAGGAAGCAGAGTGCTATAGAGGGAGGAAACTGGAGTATGCATCGGGCAATGCACACTTaGTCTTGCTTCACAAAGCGG | + |
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Preference number: 4 (lower is better) Translates to: LICPRKQSAIEGGNWSMHRAMHT*SCFTKR Trigger: CCGCTTTGTGAAGCAAGACCAAGTGTGCATTGCCCG...ATGCATACTCCAGTTTCCTCCCTCTATAGCACTCTGCTTCCTTGGACAAATCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| 3UTR CAA 72 bp | GCAGAGAGAGCACCAAGACAGAAAATTCTCCCGCTGTaGATAGTTCCAAGGGCCATAAAGTCATCCTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: AERAPRQKILPL*IVPRAIKSSFQ Trigger: CTGGAAGGATGACTTTATGGCCCTTGGAACTATCAACAGCGGGAGAATTTTCTGTCTTGGTGCTCTCTCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| CDS-3UTR TCA 90 bp | CATGTTAGTTATCTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAGCGTGGATGTTGAGCTaGCTGCTGAAGGCCAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: HVSYLQHIHTPTLTVPHRAWMLS*LLKAKL Trigger: CAGCTTGGCCTTCAGCAGTCAGCTCAACATCCACGC...TCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAGATAACTAACATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR GCA 90 bp | CTGATTTGTCCAAGGAAGCAGAGTGCTATAGAGGGAGGAAACTGGAGTATGCATCTCCAATGGTTGACTTaGCAGCATCCACATGCCCAA | + |
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Preference number: 4 (lower is better) Translates to: LICPRKQSAIEGGNWSMHLQWLT*QHPHAQ Trigger: TTGGGCATGTGGATGCTGGCAAGTCAACCATTGGAG...ATGCATACTCCAGTTTCCTCCCTCTATAGCACTCTGCTTCCTTGGACAAATCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR CCA 90 bp | AGGAAGCAGAGTGCTATAGAGGGAGGAAACTGGAGTATGCATTCAGGAGTGACATTACCCCTGCTGTTTTaGCCAGCATTGCATGTTCTC | + |
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Preference number: 4 (lower is better) Translates to: RKQSAIEGGNWSMHSGVTLPLLF*PALHVL Trigger: GAGAACATGCAATGCTGGCCAAAACAGCAGGGGTAA...TGTCACTCCTGAATGCATACTCCAGTTTCCTCCCTCTATAGCACTCTGCTTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR GCA 90 bp | CTTCTCTCTGTAGCAGAATCAACAGAAAATAGATCCAATGCCTTAATCAGAGATAAGGCCAAGCTGAGATaGTTGCGCTGGGCCTCGGCT | + |
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Preference number: 4 (lower is better) Translates to: LLSVAESTENRSNALIRDKAKLR*LRWASA Trigger: AGCCGAGGCCCAGCGCAAGCATCTCAGCTTGGCCTT...ATCTCTGATTAAGGCATTGGATCTATTTTCTGTTGATTCTGCTACAGAGAGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| CDS-3UTR GCA 90 bp | CTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAACAAAGGATGTCGGAAGGTTCTACAGGTaGTCCCCATTCCATCCGTTT | + |
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Preference number: 4 (lower is better) Translates to: LQHIHTPTLTVPHRTKDVGRFYR*SPFHPF Trigger: AAACGGATGGAATGGGGAGCACCTGTAGAACCTTCC...GACATCCTTTGTTCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR GCA 90 bp | CTGATTTGTCCAAGGAAGCAGAGTGCTATAGAGGGAGGAAACTGGAGTATGCATTCCTTAACCGGGCAATaGACACTTGGTCTTGCTTCA | + |
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Preference number: 4 (lower is better) Translates to: LICPRKQSAIEGGNWSMHSLTGQ*TLGLAS Trigger: TGAAGCAAGACCAAGTGTGCATTGCCCGGTTAAGGA...ATGCATACTCCAGTTTCCTCCCTCTATAGCACTCTGCTTCCTTGGACAAATCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR CCA 90 bp | CTGATTTGTCCAAGGAAGCAGAGTGCTATAGAGGGAGGAAACTGGAGTATGCATAATGTGCGTCCGGAATaGCAAAGATTACTGGGTTCA | + |
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Preference number: 4 (lower is better) Translates to: LICPRKQSAIEGGNWSMHNVRPE*QRLLGS Trigger: TGAACCCAGTAATCTTTGCCATTCCGGACGCACATT...ATGCATACTCCAGTTTCCTCCCTCTATAGCACTCTGCTTCCTTGGACAAATCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| 3UTR CAA 72 bp | CAAAATATGGGCACAAGTTTGTCAATGGGCAGTAGGTaGCGGTCAATCTTTCACACATTATGGTGCAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: QNMGTSLSMGSR*RSIFHTLWCRG Trigger: GCCTCTGCACCATAATGTGTGAAAGATTGACCGCAACCTACTGCCCATTGACAAACTTGTGCCCATATTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR TCA 90 bp | AGGAAGCAGAGTGCTATAGAGGGAGGAAACTGGAGTATGCATTCAGGAGTGACAAATTGGCCCATCAATTaGTCTGTTGAAGTTTGGCAA | + |
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Preference number: 4 (lower is better) Translates to: RKQSAIEGGNWSMHSGVTNWPIN*SVEVWQ Trigger: TTGCCAAACTTCAACAGATCAATTGATGGGCCAATT...TGTCACTCCTGAATGCATACTCCAGTTTCCTCCCTCTATAGCACTCTGCTTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR CCA 90 bp | AGTTATCTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAACAAAGCAAATTCCCCTTTCCTaGCAGAGATCACCAGCACAG | + |
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Preference number: 4 (lower is better) Translates to: SYLQHIHTPTLTVPHRTKQIPLS*QRSPAQ Trigger: CTGTGCTGGTGATCTCTGCCAGGAAAGGGGAATTTG...CTTTGTTCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAGATAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR TCA 90 bp | CTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAACAAAGGATGTCTTTAAAAATGGATCCTaGTTCCAGCTTACCCAGGAC | + |
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Preference number: 4 (lower is better) Translates to: LQHIHTPTLTVPHRTKDVFKNGS*FQLTQD Trigger: GTCCTGGGTAAGCTGGAATCAGGATCCATTTTTAAA...GACATCCTTTGTTCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR TCA 90 bp | CTCACACACTCTACTACAAGTATGAAGCAGAGAAAGCAAACTGGACATGAGGTACGTGGATTTTTGCTGTaGAATTTCTCTTCAGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: LTHSTTSMKQRKQTGHEVRGFLL*NFSSGS Trigger: GGAGCCTGAAGAGAAATTTCACAGCAAAAATCCACG...TACCTCATGTCCAGTTTGCTTTCTCTGCTTCATACTTGTAGTAGAGTGTGTGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| CDS-3UTR TCA 90 bp | TATCTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAACAAAGGATCATCCACATGCCCAATaGAGACCACATTTACGTGTT | + |
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Preference number: 4 (lower is better) Translates to: YLQHIHTPTLTVPHRTKDHPHAQ*RPHLRV Trigger: AACACGTAAATGTGGTCTTCATTGGGCATGTGGATG...ATCCTTTGTTCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAGATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR TCA 90 bp | AGTTATCTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAACAAAGTTTCTTAGGTGCACCTaGTGGTATGGACACAGATTT | + |
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Preference number: 4 (lower is better) Translates to: SYLQHIHTPTLTVPHRTKFLRCT*WYGHRF Trigger: AAATCTGTGTCCATACCATCAGGTGCACCTAAGAAA...CTTTGTTCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAGATAACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR TCA 90 bp | CATGTTAGTTATCTTCAACATATACACACACCAACACTGACTGTTCCCCACAGATCAATGATCACTATCTaGACATCAAATGTGCGTCCG | + |
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Preference number: 4 (lower is better) Translates to: HVSYLQHIHTPTLTVPHRSMITI*TSNVRP Trigger: CGGACGCACATTTGATGTTCAGATAGTGATCATTGA...TCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAGATAACTAACATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR GCA 90 bp | TATCTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAACAAAGGATTCTGAACATCAAATGTaGGTCCGGAATGGCAAAGAT | + |
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Preference number: 4 (lower is better) Translates to: YLQHIHTPTLTVPHRTKDSEHQM*VRNGKD Trigger: ATCTTTGCCATTCCGGACGCACATTTGATGTTCAGA...ATCCTTTGTTCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAGATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR TCA 90 bp | CATGTTAGTTATCTTCAACATATACACACACCAACACTGACTGTTCCCCACAGATTCTACAACAGGTTCTaGAAGTTCCATGGTAACAAC | + |
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Preference number: 4 (lower is better) Translates to: HVSYLQHIHTPTLTVPHRFYNRF*KFHGNN Trigger: GTTGTTACCATGGAACTTTCAGAACCTGTTGTAGAA...TCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAGATAACTAACATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR TCA 90 bp | AGTTATCTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAACAAAGCATCAATTGATCTGTTaGAGTTTGGCAAACTATCCA | + |
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Preference number: 4 (lower is better) Translates to: SYLQHIHTPTLTVPHRTKHQLIC*SLANYP Trigger: TGGATAGTTTGCCAAACTTCAACAGATCAATTGATG...CTTTGTTCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAGATAACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS CCA 90 bp | GATGCTTGCGCTGGGCCTCGGCTTCCGCGGCCTCAGCCGCTGCCATaGCTGCGGGGGCGATTCCATCCCCGCTCGGAGCCGAACCCGGGG | + |
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Preference number: 5 (lower is better) Translates to: DACAGPRLPRPQPLP*LRGRFHPRSEPNPG Trigger: CCCCGGGTTCGGCTCCGAGCGGGGATGGAATCGCCCCCGCAGCCATGGCAGCGGCTGAGGCCGCGGAAGCCGAGGCCCAGCGCAAGCATC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000096368.4 ENSMUST00000137033.2 |
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| CDS-3UTR CAA 90 bp | AAGCATGGCAGCAAACAGCAGGCATGGCAACTGGAGCAGGAAGCTGAGAGCTCAGCCAAGCTGAGATGCTaGCGCTGGGCCTCGGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: KHGSKQQAWQLEQEAESSAKLRC*RWASAS Trigger: GGAAGCCGAGGCCCAGCGCAAGCATCTCAGCTTGGC...TGAGCTCTCAGCTTCCTGCTCCAGTTGCCATGCCTGCTGTTTGCTGCCATGCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137033.2 |
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| CDS-3UTR CAA 90 bp | AGGAAGCAGAGTGCTATAGAGGGAGGAAACTGGAGTATGCATTCAGGAGTGACAGCCAAGCTGAGATGCTaGCGCTGGGCCTCGGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: RKQSAIEGGNWSMHSGVTAKLRC*RWASAS Trigger: GGAAGCCGAGGCCCAGCGCAAGCATCTCAGCTTGGC...TGTCACTCCTGAATGCATACTCCAGTTTCCTCCCTCTATAGCACTCTGCTTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR CAA 90 bp | CTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAACAAAGGATGTCCCTCCAATGGTTGACTaGCCAGCATCCACATGCCCA | + |
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Preference number: 5 (lower is better) Translates to: LQHIHTPTLTVPHRTKDVPPMVD*PASTCP Trigger: TGGGCATGTGGATGCTGGCAAGTCAACCATTGGAGG...GACATCCTTTGTTCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR CAA 90 bp | CTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAACAAAGGATGTCCCGGGCAATGCACACTaGGTCTTGCTTCACAAAGCG | + |
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Preference number: 5 (lower is better) Translates to: LQHIHTPTLTVPHRTKDVPGNAH*VLLHKA Trigger: CGCTTTGTGAAGCAAGACCAAGTGTGCATTGCCCGG...GACATCCTTTGTTCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR CAA 90 bp | AGGAAGCAGAGTGCTATAGAGGGAGGAAACTGGAGTATGCATTCAGGAGTGACACCATCAATTGATCTGTaGAAGTTTGGCAAACTATCC | + |
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Preference number: 5 (lower is better) Translates to: RKQSAIEGGNWSMHSGVTPSIDL*KFGKLS Trigger: GGATAGTTTGCCAAACTTCAACAGATCAATTGATGG...TGTCACTCCTGAATGCATACTCCAGTTTCCTCCCTCTATAGCACTCTGCTTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR CAA 90 bp | CTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAACAAAGGATGTCGTATGGACACAGATTTaGATTTCCTTACTTCCTCTT | + |
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Preference number: 5 (lower is better) Translates to: LQHIHTPTLTVPHRTKDVVWTQI*ISLLPL Trigger: AAGAGGAAGTAAGGAAATCAAAATCTGTGTCCATAC...GACATCCTTTGTTCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS-3UTR CAA 90 bp | AGTTATCTTCAACATATACACACACCAACACTGACTGTTCCCCACAGAACAAAGCTTTTCCAATGGCGATaGTTTTACCCTCATCTCTTA | + |
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Preference number: 5 (lower is better) Translates to: SYLQHIHTPTLTVPHRTKLFQWR*FYPHLL Trigger: TAAGAGATGAGGGTAAAACAATCGCCATTGGAAAAG...CTTTGTTCTGTGGGGAACAGTCAGTGTTGGTGTGTGTATATGTTGAAGATAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS CCA 72 bp | GCTGGGCCTCGGCTTCCGCGGCCTCAGCCGCTGCCATaGCTGCGGGGGCGATTCCATCCCCGCTCGGAGCCG | + |
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Preference number: 6 (lower is better) Translates to: AGPRLPRPQPLP*LRGRFHPRSEP Trigger: CGGCTCCGAGCGGGGATGGAATCGCCCCCGCAGCCATGGCAGCGGCTGAGGCCGCGGAAGCCGAGGCCCAGC 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000096368.4 ENSMUST00000137033.2 |
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| CDS GCA 72 bp | CTTGCGCTGGGCCTCGGCTTCCGCGGCCTCAGCCGCTaGCATGGCTGCGGGGGCGATTCCATCCCCGCTCGG | + |
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Preference number: 6 (lower is better) Translates to: LALGLGFRGLSR*HGCGGDSIPAR Trigger: CCGAGCGGGGATGGAATCGCCCCCGCAGCCATGGCAGCGGCTGAGGCCGCGGAAGCCGAGGCCCAGCGCAAG 75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000096368.4 ENSMUST00000137033.2 |
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| CDS TCA 72 bp | ACGCTAGGCACGAAAGGTTTGGCGTGGATGTTGAGCTaGCTGCTGAAGGCCAAGCTGAGATGCTTGCGCTGG | + |
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Preference number: 6 (lower is better) Translates to: TLGTKGLAWMLS*LLKAKLRCLRW Trigger: CCAGCGCAAGCATCTCAGCTTGGCCTTCAGCAGTCAGCTCAACATCCACGCCAAACCTTTCGTGCCTAGCGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096368.4 ENSMUST00000137033.2 |
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| CDS GCA 72 bp | CTCCATCACTTCCTTGACACTTTCTTCTGGGGGCCCTaGATCTCCCAAAGAAGCCTCAGGCTTTGCTTCACT | + |
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Preference number: 6 (lower is better) Translates to: LHHFLDTFFWGP*ISQRSLRLCFT Trigger: AGTGAAGCAAAGCCTGAGGCTTCTTTGGGAGATGCAGGGCCCCCAGAAGAAAGTGTCAAGGAAGTGATGGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS GCA 72 bp | TGGGGGCCCTGCATCTCCCAAAGAAGCCTCAGGCTTTaGTTCACTCACTTCTTTAAGCTCCCAAGATTCTTC | + |
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Preference number: 6 (lower is better) Translates to: WGPCISQRSLRL*FTHFFKLPRFF Trigger: GAAGAATCTTGGGAGCTTAAAGAAGTGAGTGAAGCAAAGCCTGAGGCTTCTTTGGGAGATGCAGGGCCCCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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| CDS CAA 72 bp | ACAATTGGCAACCTAATTGGCCCATCAATTGATCTGTaGAAGTTTGGCAAACTATCCAAATACGGAATAAAT | + |
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Preference number: 6 (lower is better) Translates to: TIGNLIGPSIDL*KFGKLSKYGIN Trigger: ATTTATTCCGTATTTGGATAGTTTGCCAAACTTCAACAGATCAATTGATGGGCCAATTAGGTTGCCAATTGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096368.4 |
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