Pregenerated sensors for GSG1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030206Ensembl transcript IDs: ENSMUST00000087729.12, ENSMUST00000111909.8, ENSMUST00000111910.4, ENSMUST00000111911.9
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCGTGGGTTGTGCACGTCAGCGGAGGAGGAAGGAAACAGCGGTGGTaGTGCGCCAGGCAGCTGGGGTTGGTGTTAAAGCTCTTGCTGTGC | + |
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Preference number: 5 (lower is better) Translates to: AWVVHVSGGGRKQRW*CARQLGLVLKLLLC Trigger: GCACAGCAAGAGCTTTAACACCAACCCCAGCTGCCTGGCGCAGCACCACCGCTGTTTCCTTCCTCCTCCGCTGACGTGCACAACCCACGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS GCA 90 bp | TGGGGTACTGATGGCAGCTGGACAAAGGTTCCCCTGCGTGGGTTGTaGACGTCAGCGGAGGAGGAAGGAAACAGCGGTGGTGCTGCGCCA | + |
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Preference number: 5 (lower is better) Translates to: WGTDGSWTKVPLRGL*TSAEEEGNSGGAAP Trigger: TGGCGCAGCACCACCGCTGTTTCCTTCCTCCTCCGCTGACGTGCACAACCCACGCAGGGGAACCTTTGTCCAGCTGCCATCAGTACCCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CCA 90 bp | CCTGCGTGGGTTGTGCACGTCAGCGGAGGAGGAAGGAAACAGCGGTaGTGCTGCGCCAGGCAGCTGGGGTTGGTGTTAAAGCTCTTGCTG | + |
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Preference number: 5 (lower is better) Translates to: PAWVVHVSGGGRKQR*CCARQLGLVLKLLL Trigger: CAGCAAGAGCTTTAACACCAACCCCAGCTGCCTGGCGCAGCACCACCGCTGTTTCCTTCCTCCTCCGCTGACGTGCACAACCCACGCAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CCA 90 bp | TGTTGGCGATGCCCCCATCCAAGGACATCGGCATGTCAAAGCACTTaGCTGCCAGACTTTGCCCGCACAGGGGCTTGGGCACCTTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: CWRCPHPRTSACQST*LPDFARTGAWAPSV Trigger: CACAGAAGGTGCCCAAGCCCCTGTGCGGGCAAAGTCTGGCAGCCAAGTGCTTTGACATGCCGATGTCCTTGGATGGGGGCATCGCCAACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS GCA 90 bp | CCATCCAAGGACATCGGCATGTCAAAGCACTTGGCTGCCAGACTTTaGCCGCACAGGGGCTTGGGCACCTTCTGTGTGCCCACAAACCAC | + |
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Preference number: 5 (lower is better) Translates to: PSKDIGMSKHLAARL*PHRGLGTFCVPTNH Trigger: GTGGTTTGTGGGCACACAGAAGGTGCCCAAGCCCCTGTGCGGGCAAAGTCTGGCAGCCAAGTGCTTTGACATGCCGATGTCCTTGGATGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS TCA 90 bp | CCGGTCATCCCCAGTCTCCCAGGTGTATTGTACCACCTCCTGGGCTaGTGTGTTGGCGATGCCCCCATCCAAGGACATCGGCATGTCAAA | + |
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Preference number: 5 (lower is better) Translates to: PVIPSLPGVLYHLLG*CVGDAPIQGHRHVK Trigger: TTTGACATGCCGATGTCCTTGGATGGGGGCATCGCCAACACATCAGCCCAGGAGGTGGTACAATACACCTGGGAGACTGGGGATGACCGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS TCA 90 bp | GAAGCTGATGAGTTGAAGTCCGATATAGGCAGTCTGGGCTCCCAGTaGCAGCCAAAAGACCTTTGCCACGGGCCCCCAAGGGAGGTGGAG | + |
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Preference number: 5 (lower is better) Translates to: EADELKSDIGSLGSQ*QPKDLCHGPPREVE Trigger: CTCCACCTCCCTTGGGGGCCCGTGGCAAAGGTCTTTTGGCTGTCACTGGGAGCCCAGACTGCCTATATCGGACTTCAACTCATCAGCTTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000087729.12 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CCA 90 bp | CCCCAGTCTCCCAGGTGTATTGTACCACCTCCTGGGCTGATGTGTTaGCGATGCCCCCATCCAAGGACATCGGCATGTCAAAGCACTTGG | + |
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Preference number: 5 (lower is better) Translates to: PQSPRCIVPPPGLMC*RCPHPRTSACQSTW Trigger: CCAAGTGCTTTGACATGCCGATGTCCTTGGATGGGGGCATCGCCAACACATCAGCCCAGGAGGTGGTACAATACACCTGGGAGACTGGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS GCA 90 bp | TCTCCCAGGTGTATTGTACCACCTCCTGGGCTGATGTGTTGGCGATaGCCCCATCCAAGGACATCGGCATGTCAAAGCACTTGGCTGCCA | + |
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Preference number: 5 (lower is better) Translates to: SPRCIVPPPGLMCWR*PHPRTSACQSTWLP Trigger: TGGCAGCCAAGTGCTTTGACATGCCGATGTCCTTGGATGGGGGCATCGCCAACACATCAGCCCAGGAGGTGGTACAATACACCTGGGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS GCA 90 bp | ACTTCTCCCCTGGCTCTTCCATGGTTTCCTCACAGGATAGCCACATaGCACTGCGGAAGGCAAGGAAGGAGAACCGGTCATCCCCAGTCT | + |
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Preference number: 5 (lower is better) Translates to: TSPLALPWFPHRIAT*HCGRQGRRTGHPQS Trigger: AGACTGGGGATGACCGGTTCTCCTTCCTTGCCTTCCGCAGTGGCATGTGGCTATCCTGTGAGGAAACCATGGAAGAGCCAGGGGAGAAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS GCA 90 bp | TGGTGCTGCGCCAGGCAGCTGGGGTTGGTGTTAAAGCTCTTGCTGTaGCTGCACTTGAACTCCAGCACCATCCTCGTGTACATGTTGAAG | + |
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Preference number: 5 (lower is better) Translates to: WCCARQLGLVLKLLL*LHLNSSTILVYMLK Trigger: CTTCAACATGTACACGAGGATGGTGCTGGAGTTCAAGTGCAGGCACAGCAAGAGCTTTAACACCAACCCCAGCTGCCTGGCGCAGCACCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CCA 90 bp | ACTCCCCTCCAAATCGGAGAGTGGGGTGACATGAGCCTTGCAACGTaGCAAATTCCAGTAGTCCTTTCTCACCTCTCTGGGCTGGTGGTG | + |
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Preference number: 5 (lower is better) Translates to: TPLQIGEWGDMSLAT*QIPVVLSHLSGLVV Trigger: CACCACCAGCCCAGAGAGGTGAGAAAGGACTACTGGAATTTGCCACGTTGCAAGGCTCATGTCACCCCACTCTCCGATTTGGAGGGGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000087729.12 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS TCA 90 bp | GGACCTAAGTTGGCAGTTGCCTGGAAGACTTGTGAATATAGCATATaGGCCACCATCCCCAGAAGTCCTGACAGGACCAAGGAGACGGCT | + |
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Preference number: 5 (lower is better) Translates to: GPKLAVAWKTCEYSI*ATIPRSPDRTKETA Trigger: AGCCGTCTCCTTGGTCCTGTCAGGACTTCTGGGGATGGTGGCTCATATGCTATATTCACAAGTCTTCCAGGCAACTGCCAACTTAGGTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CCA 90 bp | GAGCCTTGCAACGTGGCAAATTCCAGTAGTCCTTTCTCACCTCTCTaGGCTGGTGGTGTGAGTTCAATGAAACGTCTGCACTTCTCCCCT | + |
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Preference number: 5 (lower is better) Translates to: EPCNVANSSSPFSPL*AGGVSSMKRLHFSP Trigger: AGGGGAGAAGTGCAGACGTTTCATTGAACTCACACCACCAGCCCAGAGAGGTGAGAAAGGACTACTGGAATTTGCCACGTTGCAAGGCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087729.12 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CCA 90 bp | GGAGAGAAGCCTTCTCCATTAACCACTCCCCTCCAAATCGGAGAGTaGGGTGACATGAGCCTTGCAACGTGGCAAATTCCAGTAGTCCTT | + |
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Preference number: 5 (lower is better) Translates to: GEKPSPLTTPLQIGE*GDMSLATWQIPVVL Trigger: AAGGACTACTGGAATTTGCCACGTTGCAAGGCTCATGTCACCCCACTCTCCGATTTGGAGGGGAGTGGTTAATGGAGAAGGCTTCTCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087729.12 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS TCA 90 bp | GAAGCCTTCTCCATTAACCACTCCCCTCCAAATCGGAGAGTGGGGTaGCATGAGCCTTGCAACGTGGCAAATTCCAGTAGTCCTTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: EAFSINHSPPNRRVG*HEPCNVANSSSPFS Trigger: TGAGAAAGGACTACTGGAATTTGCCACGTTGCAAGGCTCATGTCACCCCACTCTCCGATTTGGAGGGGAGTGGTTAATGGAGAAGGCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000087729.12 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS TCA 90 bp | GCTGCTCTTCTACAGATGGCTCGACCACTTCCTTTAGCTCCTGGCTaGTCCCTTGTTGAAATTCTTTGTCCTGTAGCGCCGAGTAGAGGT | + |
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Preference number: 5 (lower is better) Translates to: AALLQMARPLPLAPG*SLVEILCPVAPSRG Trigger: ACCTCTACTCGGCGCTACAGGACAAAGAATTTCAACAAGGGATCAGCCAGGAGCTAAAGGAAGTGGTCGAGCCATCTGTAGAAGAGCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CAA 90 bp | GGCTGGGGTACTGATGGCAGCTGGACAAAGGTTCCCCTGCGTGGGTaGTGCACGTCAGCGGAGGAGGAAGGAAACAGCGGTGGTGCTGCG | + |
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Preference number: 6 (lower is better) Translates to: GWGTDGSWTKVPLRG*CTSAEEEGNSGGAA Trigger: CGCAGCACCACCGCTGTTTCCTTCCTCCTCCGCTGACGTGCACAACCCACGCAGGGGAACCTTTGTCCAGCTGCCATCAGTACCCCAGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS GCA 72 bp | GTGCACGTCAGCGGAGGAGGAAGGAAACAGCGGTGGTaGTGCGCCAGGCAGCTGGGGTTGGTGTTAAAGCTC | + |
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Preference number: 6 (lower is better) Translates to: VHVSGGGRKQRW*CARQLGLVLKL Trigger: GAGCTTTAACACCAACCCCAGCTGCCTGGCGCAGCACCACCGCTGTTTCCTTCCTCCTCCGCTGACGTGCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CAA 72 bp | AGGCAGTCTGGGCTCCCAGTGACAGCCAAAAGACCTTaGCCACGGGCCCCCAAGGGAGGTGGAGGAGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: RQSGLPVTAKRP*PRAPKGGGGEK Trigger: CTTCTCTCCTCCACCTCCCTTGGGGGCCCGTGGCAAAGGTCTTTTGGCTGTCACTGGGAGCCCAGACTGCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000087729.12 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS GCA 72 bp | GACATCGGCATGTCAAAGCACTTGGCTGCCAGACTTTaGCCGCACAGGGGCTTGGGCACCTTCTGTGTGCCC | + |
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Preference number: 6 (lower is better) Translates to: DIGMSKHLAARL*PHRGLGTFCVP Trigger: GGGCACACAGAAGGTGCCCAAGCCCCTGTGCGGGCAAAGTCTGGCAGCCAAGTGCTTTGACATGCCGATGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS GCA 72 bp | CACGTCAGCGGAGGAGGAAGGAAACAGCGGTGGTGCTaGGCCAGGCAGCTGGGGTTGGTGTTAAAGCTCTTG | + |
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Preference number: 6 (lower is better) Translates to: HVSGGGRKQRWC*ARQLGLVLKLL Trigger: CAAGAGCTTTAACACCAACCCCAGCTGCCTGGCGCAGCACCACCGCTGTTTCCTTCCTCCTCCGCTGACGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CCA 72 bp | TGCCCCCATCCAAGGACATCGGCATGTCAAAGCACTTaGCTGCCAGACTTTGCCCGCACAGGGGCTTGGGCA | + |
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Preference number: 6 (lower is better) Translates to: CPHPRTSACQST*LPDFARTGAWA Trigger: TGCCCAAGCCCCTGTGCGGGCAAAGTCTGGCAGCCAAGTGCTTTGACATGCCGATGTCCTTGGATGGGGGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CAA 72 bp | AAGCACTTGGCTGCCAGACTTTGCCCGCACAGGGGCTaGGGCACCTTCTGTGTGCCCACAAACCACTCGCTG | + |
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Preference number: 6 (lower is better) Translates to: KHLAARLCPHRG*GTFCVPTNHSL Trigger: CAGCGAGTGGTTTGTGGGCACACAGAAGGTGCCCAAGCCCCTGTGCGGGCAAAGTCTGGCAGCCAAGTGCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CAA 72 bp | GGACATCGGCATGTCAAAGCACTTGGCTGCCAGACTTaGCCCGCACAGGGGCTTGGGCACCTTCTGTGTGCC | + |
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Preference number: 6 (lower is better) Translates to: GHRHVKALGCQT*PAQGLGHLLCA Trigger: GGCACACAGAAGGTGCCCAAGCCCCTGTGCGGGCAAAGTCTGGCAGCCAAGTGCTTTGACATGCCGATGTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CAA 72 bp | ATGCCCCCATCCAAGGACATCGGCATGTCAAAGCACTaGGCTGCCAGACTTTGCCCGCACAGGGGCTTGGGC | + |
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Preference number: 6 (lower is better) Translates to: MPPSKDIGMSKH*AARLCPHRGLG Trigger: GCCCAAGCCCCTGTGCGGGCAAAGTCTGGCAGCCAAGTGCTTTGACATGCCGATGTCCTTGGATGGGGGCAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CAA 90 bp | GGCATGTCAAAGCACTTGGCTGCCAGACTTTGCCCGCACAGGGGCTaGGGCACCTTCTGTGTGCCCACAAACCACTCGCTGCTGAGCAAG | + |
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Preference number: 6 (lower is better) Translates to: GMSKHLAARLCPHRG*GTFCVPTNHSLLSK Trigger: CTTGCTCAGCAGCGAGTGGTTTGTGGGCACACAGAAGGTGCCCAAGCCCCTGTGCGGGCAAAGTCTGGCAGCCAAGTGCTTTGACATGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CAA 90 bp | GTGTTGGCGATGCCCCCATCCAAGGACATCGGCATGTCAAAGCACTaGGCTGCCAGACTTTGCCCGCACAGGGGCTTGGGCACCTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: VLAMPPSKDIGMSKH*AARLCPHRGLGTFC Trigger: ACAGAAGGTGCCCAAGCCCCTGTGCGGGCAAAGTCTGGCAGCCAAGTGCTTTGACATGCCGATGTCCTTGGATGGGGGCATCGCCAACAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CAA 90 bp | GTCCGATATAGGCAGTCTGGGCTCCCAGTGACAGCCAAAAGACCTTaGCCACGGGCCCCCAAGGGAGGTGGAGGAGAGAAGCCTTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: VRYRQSGLPVTAKRP*PRAPKGGGGEKPSP Trigger: TGGAGAAGGCTTCTCTCCTCCACCTCCCTTGGGGGCCCGTGGCAAAGGTCTTTTGGCTGTCACTGGGAGCCCAGACTGCCTATATCGGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000087729.12 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CAA 90 bp | GGAGGAGGAAGGAAACAGCGGTGGTGCTGCGCCAGGCAGCTGGGGTaGGTGTTAAAGCTCTTGCTGTGCCTGCACTTGAACTCCAGCACC | + |
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Preference number: 6 (lower is better) Translates to: GGGRKQRWCCARQLG*VLKLLLCLHLNSST Trigger: GGTGCTGGAGTTCAAGTGCAGGCACAGCAAGAGCTTTAACACCAACCCCAGCTGCCTGGCGCAGCACCACCGCTGTTTCCTTCCTCCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS TCA 72 bp | CCCAGTCTCCCAGGTGTATTGTACCACCTCCTGGGCTaGTGTGTTGGCGATGCCCCCATCCAAGGACATCGG | + |
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Preference number: 6 (lower is better) Translates to: PSLPGVLYHLLG*CVGDAPIQGHR Trigger: CCGATGTCCTTGGATGGGGGCATCGCCAACACATCAGCCCAGGAGGTGGTACAATACACCTGGGAGACTGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CAA 90 bp | CCCATCCAAGGACATCGGCATGTCAAAGCACTTGGCTGCCAGACTTaGCCCGCACAGGGGCTTGGGCACCTTCTGTGTGCCCACAAACCA | + |
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Preference number: 6 (lower is better) Translates to: PIQGHRHVKALGCQT*PAQGLGHLLCAHKP Trigger: TGGTTTGTGGGCACACAGAAGGTGCCCAAGCCCCTGTGCGGGCAAAGTCTGGCAGCCAAGTGCTTTGACATGCCGATGTCCTTGGATGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CAA 90 bp | CAGCGGTGGTGCTGCGCCAGGCAGCTGGGGTTGGTGTTAAAGCTCTaGCTGTGCCTGCACTTGAACTCCAGCACCATCCTCGTGTACATG | + |
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Preference number: 6 (lower is better) Translates to: QRWCCARQLGLVLKL*LCLHLNSSTILVYM Trigger: CATGTACACGAGGATGGTGCTGGAGTTCAAGTGCAGGCACAGCAAGAGCTTTAACACCAACCCCAGCTGCCTGGCGCAGCACCACCGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CAA 90 bp | AGAAGTCCTGACAGGACCAAGGAGACGGCTGCAAACGCGCTTAGCTaGAGCCCACAGCCAGGGTTCGTGGTGAGCAACAGATCCGTCAGT | + |
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Preference number: 6 (lower is better) Translates to: RSPDRTKETAANALS*SPQPGFVVSNRSVS Trigger: ACTGACGGATCTGTTGCTCACCACGAACCCTGGCTGTGGGCTCAAGCTAAGCGCGTTTGCAGCCGTCTCCTTGGTCCTGTCAGGACTTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS TCA 72 bp | GAGTTGAAGTCCGATATAGGCAGTCTGGGCTCCCAGTaGCAGCCAAAAGACCTTTGCCACGGGCCCCCAAGG | + |
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Preference number: 6 (lower is better) Translates to: ELKSDIGSLGSQ*QPKDLCHGPPR Trigger: CCTTGGGGGCCCGTGGCAAAGGTCTTTTGGCTGTCACTGGGAGCCCAGACTGCCTATATCGGACTTCAACTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000087729.12 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CAA 72 bp | AGGAAACAGCGGTGGTGCTGCGCCAGGCAGCTGGGGTaGGTGTTAAAGCTCTTGCTGTGCCTGCACTTGAAC | + |
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Preference number: 6 (lower is better) Translates to: RKQRWCCARQLG*VLKLLLCLHLN Trigger: GTTCAAGTGCAGGCACAGCAAGAGCTTTAACACCAACCCCAGCTGCCTGGCGCAGCACCACCGCTGTTTCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CAA 90 bp | TCCCCAGTCTCCCAGGTGTATTGTACCACCTCCTGGGCTGATGTGTaGGCGATGCCCCCATCCAAGGACATCGGCATGTCAAAGCACTTG | + |
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Preference number: 6 (lower is better) Translates to: SPVSQVYCTTSWADV*AMPPSKDIGMSKHL Trigger: CAAGTGCTTTGACATGCCGATGTCCTTGGATGGGGGCATCGCCAACACATCAGCCCAGGAGGTGGTACAATACACCTGGGAGACTGGGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS TCA 72 bp | TGGGCACCTTCTGTGTGCCCACAAACCACTCGCTGCTaGGCAAGGATGCTGTGGAGAGGCCGAGTGATAACA | + |
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Preference number: 6 (lower is better) Translates to: WAPSVCPQTTRC*ARMLWRGRVIT Trigger: TGTTATCACTCGGCCTCTCCACAGCATCCTTGCTCAGCAGCGAGTGGTTTGTGGGCACACAGAAGGTGCCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS GCA 72 bp | GCCAGGCAGCTGGGGTTGGTGTTAAAGCTCTTGCTGTaGCTGCACTTGAACTCCAGCACCATCCTCGTGTAC | + |
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Preference number: 6 (lower is better) Translates to: ARQLGLVLKLLL*LHLNSSTILVY Trigger: GTACACGAGGATGGTGCTGGAGTTCAAGTGCAGGCACAGCAAGAGCTTTAACACCAACCCCAGCTGCCTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CCA 72 bp | CCCAGGTGTATTGTACCACCTCCTGGGCTGATGTGTTaGCGATGCCCCCATCCAAGGACATCGGCATGTCAA | + |
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Preference number: 6 (lower is better) Translates to: PRCIVPPPGLMC*RCPHPRTSACQ Trigger: TTGACATGCCGATGTCCTTGGATGGGGGCATCGCCAACACATCAGCCCAGGAGGTGGTACAATACACCTGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CAA 72 bp | TCCCAGGTGTATTGTACCACCTCCTGGGCTGATGTGTaGGCGATGCCCCCATCCAAGGACATCGGCATGTCA | + |
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Preference number: 6 (lower is better) Translates to: SQVYCTTSWADV*AMPPSKDIGMS Trigger: TGACATGCCGATGTCCTTGGATGGGGGCATCGCCAACACATCAGCCCAGGAGGTGGTACAATACACCTGGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CAA 90 bp | GCCAGGCAGCTGGGGTTGGTGTTAAAGCTCTTGCTGTGCCTGCACTaGAACTCCAGCACCATCCTCGTGTACATGTTGAAGGTGGTGACC | + |
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Preference number: 6 (lower is better) Translates to: ARQLGLVLKLLLCLH*NSSTILVYMLKVVT Trigger: GGTCACCACCTTCAACATGTACACGAGGATGGTGCTGGAGTTCAAGTGCAGGCACAGCAAGAGCTTTAACACCAACCCCAGCTGCCTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS TCA 72 bp | GAGTTGAAGTCCGATATAGGCAGTCTGGGCTCCCAGTaGCAGCCAAAAGACCTCTCTCTGGGCTGGTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: ELKSDIGSLGSQ*QPKDLSLGWWC Trigger: ACACCACCAGCCCAGAGAGAGGTCTTTTGGCTGTCACTGGGAGCCCAGACTGCCTATATCGGACTTCAACTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111909.8 |
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| CDS GCA 72 bp | CTGGCTCTTCCATGGTTTCCTCACAGGATAGCCACATaGCACTGCGGAAGGCAAGGAAGGAGAACCGGTCAT | + |
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Preference number: 6 (lower is better) Translates to: LALPWFPHRIAT*HCGRQGRRTGH Trigger: ATGACCGGTTCTCCTTCCTTGCCTTCCGCAGTGGCATGTGGCTATCCTGTGAGGAAACCATGGAAGAGCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CCA 72 bp | GTCTGGGCTCCCAGTGACAGCCAAAAGACCTCTCTCTaGGCTGGTGGTGTGAGTTCAATGAAACGTCTGCAC | + |
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Preference number: 6 (lower is better) Translates to: VWAPSDSQKTSL*AGGVSSMKRLH Trigger: GTGCAGACGTTTCATTGAACTCACACCACCAGCCCAGAGAGAGGTCTTTTGGCTGTCACTGGGAGCCCAGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111909.8 |
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| CDS GCA 72 bp | TGTATTGTACCACCTCCTGGGCTGATGTGTTGGCGATaGCCCCATCCAAGGACATCGGCATGTCAAAGCACT | + |
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Preference number: 6 (lower is better) Translates to: CIVPPPGLMCWR*PHPRTSACQST Trigger: AGTGCTTTGACATGCCGATGTCCTTGGATGGGGGCATCGCCAACACATCAGCCCAGGAGGTGGTACAATACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CCA 72 bp | CAAATCGGAGAGTGGGGTGACATGAGCCTTGCAACGTaGCAAATTCCAGTAGTCCTTTCTCACCTCTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: QIGEWGDMSLAT*QIPVVLSHLSG Trigger: CCCAGAGAGGTGAGAAAGGACTACTGGAATTTGCCACGTTGCAAGGCTCATGTCACCCCACTCTCCGATTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087729.12 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CCA 72 bp | CCTTCTCCATTAACCACTCCCCTCCAAATCGGAGAGTaGGGTGACATGAGCCTTGCAACGTGGCAAATTCCA | + |
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Preference number: 6 (lower is better) Translates to: PSPLTTPLQIGE*GDMSLATWQIP Trigger: TGGAATTTGCCACGTTGCAAGGCTCATGTCACCCCACTCTCCGATTTGGAGGGGAGTGGTTAATGGAGAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087729.12 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS TCA 72 bp | TCCATTAACCACTCCCCTCCAAATCGGAGAGTGGGGTaGCATGAGCCTTGCAACGTGGCAAATTCCAGTAGT | + |
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Preference number: 6 (lower is better) Translates to: SINHSPPNRRVG*HEPCNVANSSS Trigger: ACTACTGGAATTTGCCACGTTGCAAGGCTCATGTCACCCCACTCTCCGATTTGGAGGGGAGTGGTTAATGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000087729.12 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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| CDS CAA 72 bp | CTGGGGTTGGTGTTAAAGCTCTTGCTGTGCCTGCACTaGAACTCCAGCACCATCCTCGTGTACATGTTGAAG | + |
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Preference number: 6 (lower is better) Translates to: LGLVLKLLLCLH*NSSTILVYMLK Trigger: CTTCAACATGTACACGAGGATGGTGCTGGAGTTCAAGTGCAGGCACAGCAAGAGCTTTAACACCAACCCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087729.12 ENSMUST00000111909.8 ENSMUST00000111910.4 ENSMUST00000111911.9 |
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