Pregenerated sensors for GSDMC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056293Ensembl transcript IDs: ENSMUST00000089900.10, ENSMUST00000188404.7, ENSMUST00000188691.2
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAATaGTGCTGGCAGGAGGTAGCCTCTGGAAGGCTACCCTTGCTCAAA | + |
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Preference number: 1 (lower is better) Translates to: MEENLTLPKTPTGSQ*CWQEVASGRLPLLK Trigger: TTTGAGCAAGGGTAGCCTTCCAGAGGCTACCTCCTGCCAGCAGCATTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| 3UTR CCA 90 bp | CGCACAAGACCAAGCAAGCCCGAGCCCACCAACATTCCACAAGAATaGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAAT | + |
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Preference number: 1 (lower is better) Translates to: RTRPSKPEPTNIPQE*RRTSPSLKHLQALN Trigger: ATTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGAATGTTGGTGGGCTCGGGCTTGCTTGGTCTTGTGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| 3UTR-3UTR CCA 90 bp | GAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAATGCTGCTGGCAGGAGCATCTTTATTCCCACTaGCCTAAAACATGCATGGTG | + |
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Preference number: 2 (lower is better) Translates to: ENLTLPKTPTGSQCCWQEHLYSH*PKTCMV Trigger: CACCATGCATGTTTTAGGCCAGTGGGAATAAAGATG...CTCCTGCCAGCAGCATTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| 3UTR-3UTR CCA 90 bp | TGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAATGCTGCTGGCCATCTTTATTCCCACTaGCCTAAAACATGCATGGTG | + |
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Preference number: 2 (lower is better) Translates to: WRRTSPSLKHLQALNAAGHLYSH*PKTCMV Trigger: CACCATGCATGTTTTAGGCCAGTGGGAATAAAGATG...GCCAGCAGCATTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| 3UTR-3UTR CCA 90 bp | CATTCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCATCTTTATTCCCACTaGCCTAAAACATGCATGGTG | + |
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Preference number: 2 (lower is better) Translates to: HSTRMEENLTLPKTPTGSHLYSH*PKTCMV Trigger: CACCATGCATGTTTTAGGCCAGTGGGAATAAAGATG...AGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| 3UTR GCA 72 bp | CTCACCCTCCCTAAAACACCTACAGGCTCTCAATGCTaGTGGCAGGAGGTAGCCTCTGGAAGGCTACCCTTG | + |
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Preference number: 3 (lower is better) Translates to: LTLPKTPTGSQC*WQEVASGRLPL Trigger: CAAGGGTAGCCTTCCAGAGGCTACCTCCTGCCAGCAGCATTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| 3UTR GCA 72 bp | AACCTCACCCTCCCTAAAACACCTACAGGCTCTCAATaGTGCTGGCAGGAGGTAGCCTCTGGAAGGCTACCC | + |
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Preference number: 3 (lower is better) Translates to: NLTLPKTPTGSQ*CWQEVASGRLP Trigger: GGGTAGCCTTCCAGAGGCTACCTCCTGCCAGCAGCATTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| 3UTR CCA 72 bp | CCAAGCAAGCCCGAGCCCACCAACATTCCACAAGAATaGAGGAGAACCTCACCCTCCCTAAAACACCTACAG | + |
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Preference number: 3 (lower is better) Translates to: PSKPEPTNIPQE*RRTSPSLKHLQ Trigger: CTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGAATGTTGGTGGGCTCGGGCTTGCTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| 3UTR CCA 72 bp | TACAGGCTCTCAATGCTGCTGGCAGGAGGTAGCCTCTaGAAGGCTACCCTTGCTCAAATGAATAATCACACA | + |
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Preference number: 3 (lower is better) Translates to: YRLSMLLAGGSL*KATLAQMNNHT Trigger: TGTGTGATTATTCATTTGAGCAAGGGTAGCCTTCCAGAGGCTACCTCCTGCCAGCAGCATTGAGAGCCTGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR TCA 90 bp | GGGTACCCGCACAAGACCAAGCAAGCCCGAGCCCACCAACATTCCACAAGAATGAGTGGGGCAAGAAGCTaGGGCTGGAGTGTGAAGGGA | + |
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Preference number: 4 (lower is better) Translates to: GYPHKTKQARAHQHSTRMSGARS*GWSVKG Trigger: TCCCTTCACACTCCAGCCTCAGCTTCTTGCCCCACT...CATTCTTGTGGAATGTTGGTGGGCTCGGGCTTGCTTGGTCTTGTGCGGGTACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 |
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| CDS-3UTR GCA 90 bp | GGGTACCCGCACAAGACCAAGCAAGCCCGAGCCCACCAACATTCCACAAGAATGACCAGCTCTACTTGGTaGGGGAGGATCCCCATCTCC | + |
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Preference number: 4 (lower is better) Translates to: GYPHKTKQARAHQHSTRMTSSTW*GRIPIS Trigger: GGAGATGGGGATCCTCCCGCACCAAGTAGAGCTGGT...CATTCTTGTGGAATGTTGGTGGGCTCGGGCTTGCTTGGTCTTGTGCGGGTACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 |
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| CDS-3UTR TCA 90 bp | GAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAATGCTGCTGGCAGGAGAGTGGGGCAAGAAGCTaGGGCTGGAGTGTGAAGGGA | + |
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Preference number: 4 (lower is better) Translates to: ENLTLPKTPTGSQCCWQESGARS*GWSVKG Trigger: TCCCTTCACACTCCAGCCTCAGCTTCTTGCCCCACT...CTCCTGCCAGCAGCATTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR TCA 90 bp | CAACATTCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCAGTGGGGCAAGAAGCTaGGGCTGGAGTGTGAAGGGA | + |
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Preference number: 4 (lower is better) Translates to: QHSTRMEENLTLPKTPTGSGARS*GWSVKG Trigger: TCCCTTCACACTCCAGCCTCAGCTTCTTGCCCCACT...GCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGAATGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR GCA 90 bp | TCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAAACCAGCTCTACTTGGTaGGGGAGGATCCCCATCTCC | + |
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Preference number: 4 (lower is better) Translates to: STRMEENLTLPKTPTGSQTSSTW*GRIPIS Trigger: GGAGATGGGGATCCTCCCGCACCAAGTAGAGCTGGT...TTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR GCA 90 bp | CAACATTCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCACCAGCTCTACTTGGTaGGGGAGGATCCCCATCTCC | + |
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Preference number: 4 (lower is better) Translates to: QHSTRMEENLTLPKTPTGTSSTW*GRIPIS Trigger: GGAGATGGGGATCCTCCCGCACCAAGTAGAGCTGGT...GCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGAATGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR TCA 90 bp | TGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAATGCTGCTGGCTTCTTGAACACCCTTTaGGAGTTCAGCCAGTTGCTC | + |
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Preference number: 4 (lower is better) Translates to: WRRTSPSLKHLQALNAAGFLNTL*EFSQLL Trigger: GAGCAACTGGCTGAACTCTCAAAGGGTGTTCAAGAA...GCCAGCAGCATTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CCA 90 bp | GGGTACCCGCACAAGACCAAGCAAGCCCGAGCCCACCAACATTCCACAAGAATGCACATGAAATCTAGATaGGCGGGCTCCTGTATTCTT | + |
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Preference number: 4 (lower is better) Translates to: GYPHKTKQARAHQHSTRMHMKSR*AGSCIL Trigger: AAGAATACAGGAGCCCGCCCATCTAGATTTCATGTG...CATTCTTGTGGAATGTTGGTGGGCTCGGGCTTGCTTGGTCTTGTGCGGGTACCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 |
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| CDS-3UTR CCA 90 bp | GAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAATGCTGCTGGCAGGAGCAGACAGGGGCATTTTaGCTTCCAAATCCCAAGTTG | + |
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Preference number: 4 (lower is better) Translates to: ENLTLPKTPTGSQCCWQEQTGAF*LPNPKL Trigger: CAACTTGGGATTTGGAAGCCAAAATGCCCCTGTCTG...CTCCTGCCAGCAGCATTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR TCA 90 bp | GGGTACCCGCACAAGACCAAGCAAGCCCGAGCCCACCAACATTCCACAAGAATGCTCAGATCTCTTCCTTaGAGCTTTTTAACCACATCC | + |
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Preference number: 4 (lower is better) Translates to: GYPHKTKQARAHQHSTRMLRSLP*SFLTTS Trigger: GGATGTGGTTAAAAAGCTTCAAGGAAGAGATCTGAG...CATTCTTGTGGAATGTTGGTGGGCTCGGGCTTGCTTGGTCTTGTGCGGGTACCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 |
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| CDS-3UTR TCA 90 bp | GAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAATGCTGCTGGCAGGAGTGTTCCAGGGATACTTaGAGTTTGGCTGTAAGATGC | + |
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Preference number: 4 (lower is better) Translates to: ENLTLPKTPTGSQCCWQECSRDT*SLAVRC Trigger: GCATCTTACAGCCAAACTTCAAGTATCCCTGGAACA...CTCCTGCCAGCAGCATTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CCA 90 bp | GGGTACCCGCACAAGACCAAGCAAGCCCGAGCCCACCAACATTCCACAAGAATGTTCTATAAATCTCAGTaGGTTCGGAAGCAGAAGCGT | + |
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Preference number: 4 (lower is better) Translates to: GYPHKTKQARAHQHSTRMFYKSQ*VRKQKR Trigger: ACGCTTCTGCTTCCGAACCCACTGAGATTTATAGAA...CATTCTTGTGGAATGTTGGTGGGCTCGGGCTTGCTTGGTCTTGTGCGGGTACCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 |
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| CDS-3UTR TCA 90 bp | TGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAATGCTGCTGGCGAAGGAGATAAAGAATaGGGTCCTTTAGGTCAACAC | + |
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Preference number: 4 (lower is better) Translates to: WRRTSPSLKHLQALNAAGEGDKE*GPLGQH Trigger: GTGTTGACCTAAAGGACCTCATTCTTTATCTCCTTC...GCCAGCAGCATTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CCA 90 bp | TGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAATGCTGCTGGCTTCTATAAATCTCAGTaGGTTCGGAAGCAGAAGCGT | + |
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Preference number: 4 (lower is better) Translates to: WRRTSPSLKHLQALNAAGFYKSQ*VRKQKR Trigger: ACGCTTCTGCTTCCGAACCCACTGAGATTTATAGAA...GCCAGCAGCATTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CCA 90 bp | TGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAATGCTGCTGGCGTACTTAGGTGTGCCTaGAAAAGTCATCTTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: WRRTSPSLKHLQALNAAGVLRCA*KSHLLL Trigger: AAGAAGAAGATGACTTTTCCAGGCACACCTAAGTAC...GCCAGCAGCATTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CCA 90 bp | CATTCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAGACAGGGGCATTTTaGCTTCCAAATCCCAAGTTG | + |
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Preference number: 4 (lower is better) Translates to: HSTRMEENLTLPKTPTGSQTGAF*LPNPKL Trigger: CAACTTGGGATTTGGAAGCCAAAATGCCCCTGTCTG...AGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR TCA 90 bp | AACATTCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTTTCTTGAACACCCTTTaGGAGTTCAGCCAGTTGCTC | + |
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Preference number: 4 (lower is better) Translates to: NIPQEWRRTSPSLKHLQAFLNTL*EFSQLL Trigger: GAGCAACTGGCTGAACTCTCAAAGGGTGTTCAAGAA...AGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGAATGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR TCA 90 bp | CAACATTCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTTCCAAATCCCAAGTTaGCCTGGGATTATTCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: QHSTRMEENLTLPKTPTGFQIPS*PGIIQL Trigger: GAGCTGAATAATCCCAGGTCAACTTGGGATTTGGAA...GCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGAATGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR TCA 90 bp | CATTCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTTTCCAAATCCCAAGTTaGCCTGGGATTATTCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: HSTRMEENLTLPKTPTGSFQIPS*PGIIQL Trigger: GAGCTGAATAATCCCAGGTCAACTTGGGATTTGGAA...AGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGAATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CCA 90 bp | TCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAACACATGAAATCTAGATaGGCGGGCTCCTGTATTCTT | + |
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Preference number: 4 (lower is better) Translates to: STRMEENLTLPKTPTGSQHMKSR*AGSCIL Trigger: AAGAATACAGGAGCCCGCCCATCTAGATTTCATGTG...TTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR TCA 90 bp | TCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAACTCAGATCTCTTCCTTaGAGCTTTTTAACCACATCC | + |
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Preference number: 4 (lower is better) Translates to: STRMEENLTLPKTPTGSQLRSLP*SFLTTS Trigger: GGATGTGGTTAAAAAGCTTCAAGGAAGAGATCTGAG...TTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR GCA 90 bp | CATTCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTAGTTTGGCTGTAAGATaGTCTTTACCAGCTCTACTT | + |
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Preference number: 4 (lower is better) Translates to: HSTRMEENLTLPKTPTGSSLAVR*SLPALL Trigger: AAGTAGAGCTGGTAAAGAGCATCTTACAGCCAAACT...AGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CCA 90 bp | CAACATTCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCGTACTTAGGTGTGCCTaGAAAAGTCATCTTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: QHSTRMEENLTLPKTPTGVLRCA*KSHLLL Trigger: AAGAAGAAGATGACTTTTCCAGGCACACCTAAGTAC...GCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGAATGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR GCA 90 bp | AACATTCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTAGTTTGGCTGTAAGATaGTCTTTACCAGCTCTACTT | + |
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Preference number: 4 (lower is better) Translates to: NIPQEWRRTSPSLKHLQASLAVR*SLPALL Trigger: AAGTAGAGCTGGTAAAGAGCATCTTACAGCCAAACT...AGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGAATGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CCA 90 bp | AACATTCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTGTACTTAGGTGTGCCTaGAAAAGTCATCTTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: NIPQEWRRTSPSLKHLQAVLRCA*KSHLLL Trigger: AAGAAGAAGATGACTTTTCCAGGCACACCTAAGTAC...AGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGAATGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CCA 90 bp | CAACATTCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCCTGTATTCTTCCAATTaGAACGATGTCATTTATCCA | + |
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Preference number: 4 (lower is better) Translates to: QHSTRMEENLTLPKTPTGLYSSN*NDVIYP Trigger: TGGATAAATGACATCGTTCCAATTGGAAGAATACAG...GCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGAATGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CCA 90 bp | TCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAACTGTATTCTTCCAATTaGAACGATGTCATTTATCCA | + |
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Preference number: 4 (lower is better) Translates to: STRMEENLTLPKTPTGSQLYSSN*NDVIYP Trigger: TGGATAAATGACATCGTTCCAATTGGAAGAATACAG...TTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CAA 90 bp | TGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAATGCTGCTGGCGACTGGGCCAGCAGATaGAGTTGGCTATCGCTCAGC | + |
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Preference number: 5 (lower is better) Translates to: WRRTSPSLKHLQALNAAGDWASR*SWLSLS Trigger: GCTGAGCGATAGCCAACTCAATCTGCTGGCCCAGTC...GCCAGCAGCATTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS TCA 90 bp | CTTGGTGCGGGAGGATCCCCATCTCCACAGACTGGGCCAGCAGATTaGGTTGGCTATCGCTCAGCACCATCAGAGCTTGAAGGAGATAAA | + |
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Preference number: 5 (lower is better) Translates to: LGAGGSPSPQTGPAD*VGYRSAPSELEGDK Trigger: TTTATCTCCTTCAAGCTCTGATGGTGCTGAGCGATAGCCAACTCAATCTGCTGGCCCAGTCTGTGGAGATGGGGATCCTCCCGCACCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CAA 90 bp | CATTCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTGACTGGGCCAGCAGATaGAGTTGGCTATCGCTCAGC | + |
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Preference number: 5 (lower is better) Translates to: HSTRMEENLTLPKTPTGSDWASR*SWLSLS Trigger: GCTGAGCGATAGCCAACTCAATCTGCTGGCCCAGTC...AGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CAA 90 bp | TGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAATGCTGCTGGCGCAGACAGGGGCATTTaGGCTTCCAAATCCCAAGTT | + |
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Preference number: 5 (lower is better) Translates to: WRRTSPSLKHLQALNAAGADRGI*ASKSQV Trigger: AACTTGGGATTTGGAAGCCAAAATGCCCCTGTCTGC...GCCAGCAGCATTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CAA 90 bp | GGGTACCCGCACAAGACCAAGCAAGCCCGAGCCCACCAACATTCCACAAGAATGCCTTTAACTGAAAGATaGACACTGCTTAAGCCTGTC | + |
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Preference number: 5 (lower is better) Translates to: GYPHKTKQARAHQHSTRMPLTER*TLLKPV Trigger: GACAGGCTTAAGCAGTGTCAATCTTTCAGTTAAAGG...CATTCTTGTGGAATGTTGGTGGGCTCGGGCTTGCTTGGTCTTGTGCGGGTACCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 |
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| CDS TCA 90 bp | TCCATAGAGAGCAGACAGGGGCATTTTGGCTTCCAAATCCCAAGTTaGCCTGGGATTATTCAGCTCCATCTTCAGACCACACTCCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: SIESRQGHFGFQIPS*PGIIQLHLQTTLLQ Trigger: CTGGAGGAGTGTGGTCTGAAGATGGAGCTGAATAATCCCAGGTCAACTTGGGATTTGGAAGCCAAAATGCCCCTGTCTGCTCTCTATGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CAA 90 bp | TGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAATGCTGCTGGCCCTTTAACTGAAAGATaGACACTGCTTAAGCCTGTC | + |
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Preference number: 5 (lower is better) Translates to: WRRTSPSLKHLQALNAAGPLTER*TLLKPV Trigger: GACAGGCTTAAGCAGTGTCAATCTTTCAGTTAAAGG...GCCAGCAGCATTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CAA 90 bp | CATTCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTGCAGACAGGGGCATTTaGGCTTCCAAATCCCAAGTT | + |
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Preference number: 5 (lower is better) Translates to: HSTRMEENLTLPKTPTGSADRGI*ASKSQV Trigger: AACTTGGGATTTGGAAGCCAAAATGCCCCTGTCTGC...AGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS TCA 90 bp | AGCTCATCCAGGATTTTGCCACCTGGGCCATCCATATGCCCCAACTaGTTCAACTCCAGCATGTTCATCAGGTCATACAGAACTTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: SSSRILPPGPSICPN*FNSSMFIRSYRTFL Trigger: CAGGAAAGTTCTGTATGACCTGATGAACATGCTGGAGTTGAATCAGTTGGGGCATATGGATGGCCCAGGTGGCAAAATCCTGGATGAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS CCA 90 bp | AGAGAGCAGACAGGGGCATTTTGGCTTCCAAATCCCAAGTTGACCTaGGATTATTCAGCTCCATCTTCAGACCACACTCCTCCAGCAATT | + |
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Preference number: 5 (lower is better) Translates to: REQTGAFWLPNPKLT*DYSAPSSDHTPPAI Trigger: AATTGCTGGAGGAGTGTGGTCTGAAGATGGAGCTGAATAATCCCAGGTCAACTTGGGATTTGGAAGCCAAAATGCCCCTGTCTGCTCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CAA 90 bp | GAGAACCTCACCCTCCCTAAAACACCTACAGGCTCTCAATGCTGCTGGCAGGAGACCTTGAAAAGCTGTTaGAAGAACCCTTTAACTGAA | + |
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Preference number: 5 (lower is better) Translates to: ENLTLPKTPTGSQCCWQETLKSC*KNPLTE Trigger: TTCAGTTAAAGGGTTCTTCAAACAGCTTTTCAAGGT...CTCCTGCCAGCAGCATTGAGAGCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CAA 90 bp | CAACATTCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCCCTTTAACTGAAAGATaGACACTGCTTAAGCCTGTC | + |
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Preference number: 5 (lower is better) Translates to: QHSTRMEENLTLPKTPTGPLTER*TLLKPV Trigger: GACAGGCTTAAGCAGTGTCAATCTTTCAGTTAAAGG...GCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGAATGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS-3UTR CAA 90 bp | CAACATTCCACAAGAATGGAGGAGAACCTCACCCTCCCTAAAACACCTACAGGCACCTTGAAAAGCTGTTaGAAGAACCCTTTAACTGAA | + |
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Preference number: 5 (lower is better) Translates to: QHSTRMEENLTLPKTPTGTLKSC*KNPLTE Trigger: TTCAGTTAAAGGGTTCTTCAAACAGCTTTTCAAGGT...GCCTGTAGGTGTTTTAGGGAGGGTGAGGTTCTCCTCCATTCTTGTGGAATGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS TCA 90 bp | CAGCCAGTTGCTCTGTTTGTTTGTAAACTTCATTTTGTAGGCACATaGAATCTAGATGGGCGGGCTCCTGTATTCTTCCAATTGGAACGA | + |
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Preference number: 5 (lower is better) Translates to: QPVALFVCKLHFVGT*NLDGRAPVFFQLER Trigger: TCGTTCCAATTGGAAGAATACAGGAGCCCGCCCATCTAGATTTCATGTGCCTACAAAATGAAGTTTACAAACAAACAGAGCAACTGGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS TCA 90 bp | GAGCATGGACAGGATACTGGACAACACAACTTCTTGAACACCCTTTaGGAGTTCAGCCAGTTGCTCTGTTTGTTTGTAAACTTCATTTTG | + |
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Preference number: 5 (lower is better) Translates to: EHGQDTGQHNFLNTL*EFSQLLCLFVNFIL Trigger: CAAAATGAAGTTTACAAACAAACAGAGCAACTGGCTGAACTCTCAAAGGGTGTTCAAGAAGTTGTGTTGTCCAGTATCCTGTCCATGCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS TCA 72 bp | GGAGGATCCCCATCTCCACAGACTGGGCCAGCAGATTaGGTTGGCTATCGCTCAGCACCATCAGAGCTTGAA | + |
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Preference number: 6 (lower is better) Translates to: GGSPSPQTGPAD*VGYRSAPSELE Trigger: TTCAAGCTCTGATGGTGCTGAGCGATAGCCAACTCAATCTGCTGGCCCAGTCTGTGGAGATGGGGATCCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS GCA 72 bp | TTTGGCTGTAAGATGCTCTTTACCAGCTCTACTTGGTaGGGGAGGATCCCCATCTCCACAGACTGGGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: FGCKMLFTSSTW*GRIPISTDWAS Trigger: GCTGGCCCAGTCTGTGGAGATGGGGATCCTCCCGCACCAAGTAGAGCTGGTAAAGAGCATCTTACAGCCAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS CAA 90 bp | TTCAAGTTAGCCTCCAGGTCCGTTGATTGGACATGTATGAAGGGCTaGGGAGCAGACACTTCAGGCTCTGGAACAGGAAAGTTGGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: FKLASRSVDWTCMKG*GADTSGSGTGKLGS Trigger: GGAGCCCAACTTTCCTGTTCCAGAGCCTGAAGTGTCTGCTCCCAAGCCCTTCATACATGTCCAATCAACGGACCTGGAGGCTAACTTGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS TCA 72 bp | TCGGACAAGCATTCCACAGGCCTCAGATCTCTTCCTTaGAGCTTTTTAACCACATCCTTGCTAGCCCGGTCA | + |
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Preference number: 6 (lower is better) Translates to: SDKHSTGLRSLP*SFLTTSLLARS Trigger: TGACCGGGCTAGCAAGGATGTGGTTAAAAAGCTTCAAGGAAGAGATCTGAGGCCTGTGGAATGCTTGTCCGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS TCA 72 bp | AATGTCTGCGACATTCAAGTTAGCCTCCAGGTCCGTTaGTTGGACATGTATGAAGGGCTTGGGAGCAGACAC | + |
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Preference number: 6 (lower is better) Translates to: NVCDIQVSLQVR*LDMYEGLGSRH Trigger: GTGTCTGCTCCCAAGCCCTTCATACATGTCCAATCAACGGACCTGGAGGCTAACTTGAATGTCGCAGACATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS CAA 72 bp | ATCGGACAAGCATTCCACAGGCCTCAGATCTCTTCCTaGAAGCTTTTTAACCACATCCTTGCTAGCCCGGTC | + |
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Preference number: 6 (lower is better) Translates to: IGQAFHRPQISS*KLFNHILASPV Trigger: GACCGGGCTAGCAAGGATGTGGTTAAAAAGCTTCAAGGAAGAGATCTGAGGCCTGTGGAATGCTTGTCCGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS CAA 90 bp | TTCCATAGAGAGCAGACAGGGGCATTTTGGCTTCCAAATCCCAAGTaGACCTGGGATTATTCAGCTCCATCTTCAGACCACACTCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: FHREQTGAFWLPNPK*TWDYSAPSSDHTPP Trigger: TGGAGGAGTGTGGTCTGAAGATGGAGCTGAATAATCCCAGGTCAACTTGGGATTTGGAAGCCAAAATGCCCCTGTCTGCTCTCTATGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS TCA 72 bp | AGCAGACAGGGGCATTTTGGCTTCCAAATCCCAAGTTaGCCTGGGATTATTCAGCTCCATCTTCAGACCACA | + |
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Preference number: 6 (lower is better) Translates to: SRQGHFGFQIPS*PGIIQLHLQTT Trigger: TGTGGTCTGAAGATGGAGCTGAATAATCCCAGGTCAACTTGGGATTTGGAAGCCAAAATGCCCCTGTCTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS CAA 72 bp | GACCTTCCCGCCTTGCCTCGAACCTTGAAAAGCTGTTaGAAGAACCCTTTAACTGAAAGATTGACACTGCTT | + |
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Preference number: 6 (lower is better) Translates to: DLPALPRTLKSC*KNPLTERLTLL Trigger: AAGCAGTGTCAATCTTTCAGTTAAAGGGTTCTTCAAACAGCTTTTCAAGGTTCGAGGCAAGGCGGGAAGGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS CCA 72 bp | GGTCATACAGAACTTTCCTGTCACCTTCATAGAGCATaGACAGGATACTGGACAACACAACTTCTTGAACAC | + |
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Preference number: 6 (lower is better) Translates to: GHTELSCHLHRA*TGYWTTQLLEH Trigger: GTGTTCAAGAAGTTGTGTTGTCCAGTATCCTGTCCATGCTCTATGAAGGTGACAGGAAAGTTCTGTATGACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS CAA 90 bp | AGTAGCAGAAGGGAGAATGACACAAGTGTTATTCTCAATGACAAGTaGCTGCTTCTTATAGGCCAACACCGAACCCTTTGGGATAGGTAT | + |
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Preference number: 6 (lower is better) Translates to: SSRRENDTSVILNDK*LLLIGQHRTLWDRY Trigger: ATACCTATCCCAAAGGGTTCGGTGTTGGCCTATAAGAAGCAGCAACTTGTCATTGAGAATAACACTTGTGTCATTCTCCCTTCTGCTACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS TCA 72 bp | AGAATTTCCAGTTTTGGATTTGGGATGCTTGTACTCTaGACCTCGATGTTGTATCCACCGTACCCAACATAC | + |
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Preference number: 6 (lower is better) Translates to: RISSFGFGMLVL*TSMLYPPYPTY Trigger: GTATGTTGGGTACGGTGGATACAACATCGAGGTTCAGAGTACAAGCATCCCAAATCCAAAACTGGAAATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS TCA 72 bp | CAGGATACTGGACAACACAACTTCTTGAACACCCTTTaGGAGTTCAGCCAGTTGCTCTGTTTGTTTGTAAAC | + |
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Preference number: 6 (lower is better) Translates to: QDTGQHNFLNTL*EFSQLLCLFVN Trigger: GTTTACAAACAAACAGAGCAACTGGCTGAACTCTCAAAGGGTGTTCAAGAAGTTGTGTTGTCCAGTATCCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS TCA 72 bp | GCTCTGTTTGTTTGTAAACTTCATTTTGTAGGCACATaGAATCTAGATGGGCGGGCTCCTGTATTCTTCCAA | + |
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Preference number: 6 (lower is better) Translates to: ALFVCKLHFVGT*NLDGRAPVFFQ Trigger: TTGGAAGAATACAGGAGCCCGCCCATCTAGATTTCATGTGCCTACAAAATGAAGTTTACAAACAAACAGAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS CAA 72 bp | ACAGGATACTGGACAACACAACTTCTTGAACACCCTTaGAGAGTTCAGCCAGTTGCTCTGTTTGTTTGTAAA | + |
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Preference number: 6 (lower is better) Translates to: TGYWTTQLLEHP*RVQPVALFVCK Trigger: TTTACAAACAAACAGAGCAACTGGCTGAACTCTCAAAGGGTGTTCAAGAAGTTGTGTTGTCCAGTATCCTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS CAA 90 bp | AGAGCATGGACAGGATACTGGACAACACAACTTCTTGAACACCCTTaGAGAGTTCAGCCAGTTGCTCTGTTTGTTTGTAAACTTCATTTT | + |
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Preference number: 6 (lower is better) Translates to: RAWTGYWTTQLLEHP*RVQPVALFVCKLHF Trigger: AAAATGAAGTTTACAAACAAACAGAGCAACTGGCTGAACTCTCAAAGGGTGTTCAAGAAGTTGTGTTGTCCAGTATCCTGTCCATGCTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS CAA 90 bp | GCAAAACTTCATAAATGTGGGCAAATTATCCAACAGTTTCCTGTTTaGAAGAATTTCCAGTTTTGGATTTGGGATGCTTGTACTCTGAAC | + |
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Preference number: 6 (lower is better) Translates to: AKLHKCGQIIQQFPV*KNFQFWIWDACTLN Trigger: GTTCAGAGTACAAGCATCCCAAATCCAAAACTGGAAATTCTTCAAAACAGGAAACTGTTGGATAATTTGCCCACATTTATGAAGTTTTGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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| CDS TCA 72 bp | ATAAATGTGGGCAAATTATCCAACAGTTTCCTGTTTTaGAGAATTTCCAGTTTTGGATTTGGGATGCTTGTA | + |
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Preference number: 6 (lower is better) Translates to: INVGKLSNSFLF*RISSFGFGMLV Trigger: TACAAGCATCCCAAATCCAAAACTGGAAATTCTTCAAAACAGGAAACTGTTGGATAATTTGCCCACATTTAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089900.10 ENSMUST00000188404.7 ENSMUST00000188691.2 |
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