Pregenerated sensors for GSDMA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017204Ensembl transcript IDs: ENSMUST00000017348.3
Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGGATTCTAACCCTCTGAGCACTGGGAGCATTTTCCAGCAGGCCTaGGGAACAGTGTGGGCAGTAACGTGTATGTATGGATCATGGCTG | + |
|
Preference number: 1 (lower is better) Translates to: LDSNPLSTGSIFQQA*GTVWAVTCMYGSWL Trigger: CAGCCATGATCCATACATACACGTTACTGCCCACACTGTTCCTCAGGCCTGCTGGAAAATGCTCCCAGTGCTCAGAGGGTTAGAATCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR TCA 90 bp | AGGGCTGGAGAACATGGGCGCTTTGGTGAGGTCAGGCAGCTTGGATaGTCTTTCCAGTGTACAGCAGATGTTCTGGATTCTAACCCTCTG | + |
|
Preference number: 1 (lower is better) Translates to: RAGEHGRFGEVRQLG*SFQCTADVLDSNPL Trigger: CAGAGGGTTAGAATCCAGAACATCTGCTGTACACTGGAAAGATCATCCAAGCTGCCTGACCTCACCAAAGCGCCCATGTTCTCCAGCCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR TCA 90 bp | GATGATCTTTCCAGTGTACAGCAGATGTTCTGGATTCTAACCCTCTaGGCACTGGGAGCATTTTCCAGCAGGCCTGAGGAACAGTGTGGG | + |
|
Preference number: 1 (lower is better) Translates to: DDLSSVQQMFWILTL*ALGAFSSRPEEQCG Trigger: CCCACACTGTTCCTCAGGCCTGCTGGAAAATGCTCCCAGTGCTCAGAGGGTTAGAATCCAGAACATCTGCTGTACACTGGAAAGATCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR CCA 90 bp | TTTCCAGCAGGCCTGAGGAACAGTGTGGGCAGTAACGTGTATGTATaGATCATGGCTGTTTCTTTACCTGGGACAATTCCCTTAAACAGA | + |
|
Preference number: 1 (lower is better) Translates to: FPAGLRNSVGSNVYV*IMAVSLPGTIPLNR Trigger: TCTGTTTAAGGGAATTGTCCCAGGTAAAGAAACAGCCATGATCCATACATACACGTTACTGCCCACACTGTTCCTCAGGCCTGCTGGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR-3UTR TCA 90 bp | GGAGTTCACTCTGCAGACCAGGCTGGCCTCGAACTTAAGAGATTCACCTGCCTCGGGCTTAGTGGGTGCTaGGCTGGAGGACAGAAGGAG | + |
|
Preference number: 2 (lower is better) Translates to: GVHSADQAGLELKRFTCLGLSGC*AGGQKE Trigger: CTCCTTCTGTCCTCCAGCTCAGCACCCACTAAGCCC...GAGGCAGGTGAATCTCTTAAGTTCGAGGCCAGCCTGGTCTGCAGAGTGAACTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR-3UTR CCA 90 bp | TCTGAGCACTGGGAGCATTTTCCAGCAGGCCTGAGGAACAGTGTGGGCAGTAACTTGCCCTGGCTGTCCTaGAGTTCACTCTGCAGACCA | + |
|
Preference number: 2 (lower is better) Translates to: SEHWEHFPAGLRNSVGSNLPWLS*SSLCRP Trigger: TGGTCTGCAGAGTGAACTCCAGGACAGCCAGGGCAA...GTTACTGCCCACACTGTTCCTCAGGCCTGCTGGAAAATGCTCCCAGTGCTCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR-3UTR CCA 90 bp | TCTGAGCACTGGGAGCATTTTCCAGCAGGCCTGAGGAACAGTGTGGGCAGTAACCAGTTGTCCTCAGCCTaGAGGCTCTGTAGTGTCTTG | + |
|
Preference number: 2 (lower is better) Translates to: SEHWEHFPAGLRNSVGSNQLSSA*RLCSVL Trigger: CAAGACACTACAGAGCCTCCAGGCTGAGGACAACTG...GTTACTGCCCACACTGTTCCTCAGGCCTGCTGGAAAATGCTCCCAGTGCTCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR-3UTR CCA 90 bp | TCTGAGCACTGGGAGCATTTTCCAGCAGGCCTGAGGAACAGTGTGGGCAGTAACTTCTCTGTGTTGCCCTaGCTGTCCTGGAGTTCACTC | + |
|
Preference number: 2 (lower is better) Translates to: SEHWEHFPAGLRNSVGSNFSVLP*LSWSSL Trigger: GAGTGAACTCCAGGACAGCCAGGGCAACACAGAGAA...GTTACTGCCCACACTGTTCCTCAGGCCTGCTGGAAAATGCTCCCAGTGCTCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR-3UTR TCA 90 bp | GGAGTTCACTCTGCAGACCAGGCTGGCCTCGAACTTAAGAGATTCACCTGCCTCGAGAGAGATAGATGGTaGGGCAGAAGGAACTTGGAG | + |
|
Preference number: 2 (lower is better) Translates to: GVHSADQAGLELKRFTCLERDRW*GRRNLE Trigger: CTCCAAGTTCCTTCTGCCTCACCATCTATCTCTCTC...GAGGCAGGTGAATCTCTTAAGTTCGAGGCCAGCCTGGTCTGCAGAGTGAACTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR-3UTR GCA 90 bp | TCTGAGCACTGGGAGCATTTTCCAGCAGGCCTGAGGAACAGTGTGGGCAGTAACGGCTCTGTAGTGTCTTaGAGTGTTACAGATGGAGCA | + |
|
Preference number: 2 (lower is better) Translates to: SEHWEHFPAGLRNSVGSNGSVVS*SVTDGA Trigger: TGCTCCATCTGTAACACTGCAAGACACTACAGAGCC...GTTACTGCCCACACTGTTCCTCAGGCCTGCTGGAAAATGCTCCCAGTGCTCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR-3UTR CCA 90 bp | GGAGTTCACTCTGCAGACCAGGCTGGCCTCGAACTTAAGAGATTCACCTGCCTCGAGGCAGAAGGAACTTaGAGACTGATTTTTGAGCTG | + |
|
Preference number: 2 (lower is better) Translates to: GVHSADQAGLELKRFTCLEAEGT*RLIFEL Trigger: CAGCTCAAAAATCAGTCTCCAAGTTCCTTCTGCCTC...GAGGCAGGTGAATCTCTTAAGTTCGAGGCCAGCCTGGTCTGCAGAGTGAACTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR-3UTR TCA 90 bp | GGAGTTCACTCTGCAGACCAGGCTGGCCTCGAACTTAAGAGATTCACCTGCCTCTTGGAGACTGATTTTTaGGCTGGCATTTCAGTTGTC | + |
|
Preference number: 2 (lower is better) Translates to: GVHSADQAGLELKRFTCLLETDF*AGISVV Trigger: GACAACTGAAATGCCAGCTCAAAAATCAGTCTCCAA...GAGGCAGGTGAATCTCTTAAGTTCGAGGCCAGCCTGGTCTGCAGAGTGAACTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR-3UTR TCA 90 bp | GTATCTTCAGGATTTAAGCATCAGGAGATGGGCTTAGTGGGTGCTGAGCTGGAGAAGGAACTTGGAGACTaGTTTTTGAGCTGGCATTTC | + |
|
Preference number: 2 (lower is better) Translates to: VSSGFKHQEMGLVGAELEKELGD*FLSWHF Trigger: GAAATGCCAGCTCAAAAATCAGTCTCCAAGTTCCTT...CTCCAGCTCAGCACCCACTAAGCCCATCTCCTGATGCTTAAATCCTGAAGATAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR TCA 72 bp | CCTCCCACCGGGGTCGCGACTCACAGGTCAAACCACTaGTTTAAAGGTTTAGGTCTTATTCTTGGGTGCCCC | + |
|
Preference number: 3 (lower is better) Translates to: PPTGVATHRSNH*FKGLGLILGCP Trigger: GGGGCACCCAAGAATAAGACCTAAACCTTTAAATCAGTGGTTTGACCTGTGAGTCGCGACCCCGGTGGGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR TCA 72 bp | AACCCTCTGAGCACTGGGAGCATTTTCCAGCAGGCCTaGGGAACAGTGTGGGCAGTAACGTGTATGTATGGA | + |
|
Preference number: 3 (lower is better) Translates to: NPLSTGSIFQQA*GTVWAVTCMYG Trigger: TCCATACATACACGTTACTGCCCACACTGTTCCTCAGGCCTGCTGGAAAATGCTCCCAGTGCTCAGAGGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR TCA 72 bp | TCCAGTGTACAGCAGATGTTCTGGATTCTAACCCTCTaGGCACTGGGAGCATTTTCCAGCAGGCCTGAGGAA | + |
|
Preference number: 3 (lower is better) Translates to: SSVQQMFWILTL*ALGAFSSRPEE Trigger: TTCCTCAGGCCTGCTGGAAAATGCTCCCAGTGCTCAGAGGGTTAGAATCCAGAACATCTGCTGTACACTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR TCA 72 bp | GAACATGGGCGCTTTGGTGAGGTCAGGCAGCTTGGATaGTCTTTCCAGTGTACAGCAGATGTTCTGGATTCT | + |
|
Preference number: 3 (lower is better) Translates to: EHGRFGEVRQLG*SFQCTADVLDS Trigger: AGAATCCAGAACATCTGCTGTACACTGGAAAGATCATCCAAGCTGCCTGACCTCACCAAAGCGCCCATGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR GCA 72 bp | CTACTTAATCAACATGAAATCTATTGTCTTGTTTTCTaGTTGTATCTTAGTCCCCTAGACCTTCCTTTCCTC | + |
|
Preference number: 3 (lower is better) Translates to: LLNQHEIYCLVF*LYLSPLDLPFL Trigger: GAGGAAAGGAAGGTCTAGGGGACTAAGATACAAGCAGAAAACAAGACAATAGATTTCATGTTGATTAAGTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR GCA 90 bp | GGAGTTCACTCTGCAGACCAGGCTGGCCTCGAACTTAAGAGATTCACCTGCCTCGCACCTCCAGTGTGCTaGTCCGTGACAGACCCGCAG | + |
|
Preference number: 4 (lower is better) Translates to: GVHSADQAGLELKRFTCLAPPVC*SVTDPQ Trigger: CTGCGGGTCTGTCACGGAGCAGCACACTGGAGGTGC...GAGGCAGGTGAATCTCTTAAGTTCGAGGCCAGCCTGGTCTGCAGAGTGAACTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR CAA 72 bp | CCAAGCCCTCAGCCAGGGCTGGAGAACATGGGCGCTTaGGTGAGGTCAGGCAGCTTGGATGATCTTTCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: PSPQPGLENMGA*VRSGSLDDLSS Trigger: ACTGGAAAGATCATCCAAGCTGCCTGACCTCACCAAAGCGCCCATGTTCTCCAGCCCTGGCTGAGGGCTTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR TCA 90 bp | GTATCTTCAGGATTTAAGCATCAGGAGATGGGCTTAGTGGGTGCTGAGCTGGAGCAGTGTGCTGCTCCGTaGCAGACCCGCAGTCCCCTT | + |
|
Preference number: 4 (lower is better) Translates to: VSSGFKHQEMGLVGAELEQCAAP*QTRSPL Trigger: AAGGGGACTGCGGGTCTGTCACGGAGCAGCACACTG...CTCCAGCTCAGCACCCACTAAGCCCATCTCCTGATGCTTAAATCCTGAAGATAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR GCA 90 bp | GGTGAGGCAGAAGGAACTTGGAGACTGATTTTTGAGCTGGCATTTCAGTTGTCCGATCTGAGGGGGAGCTaGCCGGCTCCAGCACATCCA | + |
|
Preference number: 4 (lower is better) Translates to: GEAEGTWRLIFELAFQLSDLRGS*PAPAHP Trigger: TGGATGTGCTGGAGCCGGGCAGCTCCCCCTCAGATC...GGACAACTGAAATGCCAGCTCAAAAATCAGTCTCCAAGTTCCTTCTGCCTCACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR TCA 90 bp | GGAGTTCACTCTGCAGACCAGGCTGGCCTCGAACTTAAGAGATTCACCTGCCTCACTCATCTTTGCCGTTaGCCATCAGTTGTCTCACTC | + |
|
Preference number: 4 (lower is better) Translates to: GVHSADQAGLELKRFTCLTHLCR*PSVVSL Trigger: GAGTGAGACAACTGATGGTCAACGGCAAAGATGAGT...GAGGCAGGTGAATCTCTTAAGTTCGAGGCCAGCCTGGTCTGCAGAGTGAACTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR GCA 90 bp | TCTGAGCACTGGGAGCATTTTCCAGCAGGCCTGAGGAACAGTGTGGGCAGTAACTTTGCATGCTGTCATTaGAAATGTGTGGAATGCCCC | + |
|
Preference number: 4 (lower is better) Translates to: SEHWEHFPAGLRNSVGSNFACCH*KCVECP Trigger: GGGGCATTCCACACATTTGCAATGACAGCATGCAAA...GTTACTGCCCACACTGTTCCTCAGGCCTGCTGGAAAATGCTCCCAGTGCTCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR GCA 90 bp | CTTGCAGTGTTACAGATGGAGCACAGTAAGGCTGGGAAGGCTTTAGGGCAGCAGCCAGGAGGGAAGGTTTaGATGCTGTCATTGCAAATG | + |
|
Preference number: 4 (lower is better) Translates to: LAVLQMEHSKAGKALGQQPGGKV*MLSLQM Trigger: CATTTGCAATGACAGCATGCAAACCTTCCCTCCTGG...CTGCTGCCCTAAAGCCTTCCCAGCCTTACTGTGCTCCATCTGTAACACTGCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR GCA 90 bp | GTATCTTCAGGATTTAAGCATCAGGAGATGGGCTTAGTGGGTGCTGAGCTGGAGGACATCTTTGGGGAGTaGTTCCAGGGTCACTTCGTG | + |
|
Preference number: 4 (lower is better) Translates to: VSSGFKHQEMGLVGAELEDIFGE*FQGHFV Trigger: CACGAAGTGACCCTGGAAGCACTCCCCAAAGATGTC...CTCCAGCTCAGCACCCACTAAGCCCATCTCCTGATGCTTAAATCCTGAAGATAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR TCA 90 bp | ATTTTTGAGCTGGCATTTCAGTTGTCCTCAGCCTGGAGGCTCTGTAGTGTCTTGTTCTTGCTTAGCAGTTaGAGGAGGGAGAGGCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: IFELAFQLSSAWRLCSVLFLLSS*RRERPA Trigger: TGCTGGCCTCTCCCTCCTTCAACTGCTAAGCAAGAA...CAAGACACTACAGAGCCTCCAGGCTGAGGACAACTGAAATGCCAGCTCAAAAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR GCA 90 bp | TTTGATCCAGTTCCTCATGCTGTGGTGACCCCCAACCATAGAATTATTTTCATTAGAGAAGCAGCCCTCTaGCTTGCCGGCTCGCTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: FDPVPHAVVTPNHRIIFIREAAL*LAGSLQ Trigger: CTGGAGCGAGCCGGCAAGGCAGAGGGCTGCTTCTCT...AATGAAAATAATTCTATGGTTGGGGGTCACCACAGCATGAGGAACTGGATCAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR CAA 72 bp | GGAACTTGGAGACTGATTTTTGAGCTGGCATTTCAGTaGTCCTCAGCCTGGAGGCTCTGTAGTGTCTTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: GTWRLIFELAFQ*SSAWRLCSVLQ Trigger: CTGCAAGACACTACAGAGCCTCCAGGCTGAGGACAACTGAAATGCCAGCTCAAAAATCAGTCTCCAAGTTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR TCA 90 bp | AACAGTGTGGGCAGTAACGTGTATGTATGGATCATGGCTGTTTCTTTACCTGGGGAATGGGTGGTCTGCTaGCAGTTTCCTCTCCTTGTG | + |
|
Preference number: 4 (lower is better) Translates to: NSVGSNVYVWIMAVSLPGEWVVC*QFPLLV Trigger: CACAAGGAGAGGAAACTGTCAGCAGACCACCCATTC...CCCAGGTAAAGAAACAGCCATGATCCATACATACACGTTACTGCCCACACTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR GCA 90 bp | GTATCTTCAGGATTTAAGCATCAGGAGATGGGCTTAGTGGGTGCTGAGCTGGAGGAGGGAAGGTTTGCATaGTGTCATTGCAAATGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: VSSGFKHQEMGLVGAELEEGRFA*CHCKCV Trigger: CACACATTTGCAATGACAGCATGCAAACCTTCCCTC...CTCCAGCTCAGCACCCACTAAGCCCATCTCCTGATGCTTAAATCCTGAAGATAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CCA 90 bp | AACAGTGTGGGCAGTAACGTGTATGTATGGATCATGGCTGTTTCTTTACCTGGGGAACTTCCCTTCTCCTaGCTTTTCTCCAGGAGGGAA | + |
|
Preference number: 4 (lower is better) Translates to: NSVGSNVYVWIMAVSLPGELPFS*LFSRRE Trigger: TTCCCTCCTGGAGAAAAGCCAGGAGAAGGGAAGTTC...CCCAGGTAAAGAAACAGCCATGATCCATACATACACGTTACTGCCCACACTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CCA 90 bp | ATTTTTGAGCTGGCATTTCAGTTGTCCTCAGCCTGGAGGCTCTGTAGTGTCTTGGTCTGCTCAAGGTCCTaGAGCTCTTTCTTCTTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: IFELAFQLSSAWRLCSVLVCSRS*SSFFFP Trigger: AGGAAAGAAGAAAGAGCTCCAGGACCTTGAGCAGAC...CAAGACACTACAGAGCCTCCAGGCTGAGGACAACTGAAATGCCAGCTCAAAAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR GCA 90 bp | TTTGATCCAGTTCCTCATGCTGTGGTGACCCCCAACCATAGAATTATTTTCATTCTCCCCAGAACAGTGTaGTCTTCCTCTTCCTCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: FDPVPHAVVTPNHRIIFILPRTV*SSSSSA Trigger: TGCTGAGGAAGAGGAAGAGCACACTGTTCTGGGGAG...AATGAAAATAATTCTATGGTTGGGGGTCACCACAGCATGAGGAACTGGATCAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR GCA 90 bp | AACAGTGTGGGCAGTAACGTGTATGTATGGATCATGGCTGTTTCTTTACCTGGGTCAACCAGCTTCAGTTaGACCGGTAGGATCTTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: NSVGSNVYVWIMAVSLPGSTSFS*TGRIFF Trigger: GAAAAAGATCCTACCGGTGCAACTGAAGCTGGTTGA...CCCAGGTAAAGAAACAGCCATGATCCATACATACACGTTACTGCCCACACTGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR GCA 90 bp | AGTAAGGGTTTGAATGATTCTGTATCTTCAGGATTTAAGCATCAGGAGATGGGCGAGAGCAGATCAGGTTaGAGGGGGAAAACACCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: SKGLNDSVSSGFKHQEMGESRSG*RGKTPS Trigger: AGAGGGTGTTTTCCCCCTGCAACCTGATCTGCTCTC...GCCCATCTCCTGATGCTTAAATCCTGAAGATACAGAATCATTCAAACCCTTACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CCA 90 bp | AACAGTGTGGGCAGTAACGTGTATGTATGGATCATGGCTGTTTCTTTACCTGGGACTAGAAGCTTCTGTTaGGCTTCACTTAGCACTGTC | + |
|
Preference number: 4 (lower is better) Translates to: NSVGSNVYVWIMAVSLPGTRSFC*ASLSTV Trigger: GACAGTGCTAAGTGAAGCCCAACAGAAGCTTCTAGT...CCCAGGTAAAGAAACAGCCATGATCCATACATACACGTTACTGCCCACACTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR CAA 72 bp | AATATACAAGCCAAGCTCATCCACACTCATCCTGAGTaGAGGGTTGAAAACAAAACTGAAGCAGCGGCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: NIQAKLIHTHPE*RVENKTEAAAL Trigger: GAGAGCCGCTGCTTCAGTTTTGTTTTCAACCCTCAACTCAGGATGAGTGTGGATGAGCTTGGCTTGTATATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR GCA 90 bp | AACAGTGTGGGCAGTAACGTGTATGTATGGATCATGGCTGTTTCTTTACCTGGGAGTTCTTCTCCATGGTaGTTTCAACCAGCTTCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: NSVGSNVYVWIMAVSLPGSSSPW*FQPASV Trigger: AACTGAAGCTGGTTGAAAGCACCATGGAGAAGAACT...CCCAGGTAAAGAAACAGCCATGATCCATACATACACGTTACTGCCCACACTGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CCA 90 bp | AGTAAGGGTTTGAATGATTCTGTATCTTCAGGATTTAAGCATCAGGAGATGGGCTTCTTTCCTAGGAGATaGCTGAGGGAAGTGAGTAGT | + |
|
Preference number: 4 (lower is better) Translates to: SKGLNDSVSSGFKHQEMGFFPRR*LREVSS Trigger: ACTACTCACTTCCCTCAGCCATCTCCTAGGAAAGAA...GCCCATCTCCTGATGCTTAAATCCTGAAGATACAGAATCATTCAAACCCTTACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CCA 90 bp | AGTAAGGGTTTGAATGATTCTGTATCTTCAGGATTTAAGCATCAGGAGATGGGCGGAAGTTCTTCTCCATaGTGCTTTCAACCAGCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: SKGLNDSVSSGFKHQEMGGSSSP*CFQPAS Trigger: TGAAGCTGGTTGAAAGCACCATGGAGAAGAACTTCC...GCCCATCTCCTGATGCTTAAATCCTGAAGATACAGAATCATTCAAACCCTTACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR CAA 72 bp | CTTAATCAACATGAAATCTATTGTCTTGTTTTCTGCTaGTATCTTAGTCCCCTAGACCTTCCTTTCCTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: LNQHEIYCLVFC*YLSPLDLPFLS Trigger: GGAGAGGAAAGGAAGGTCTAGGGGACTAAGATACAAGCAGAAAACAAGACAATAGATTTCATGTTGATTAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| 3UTR CAA 72 bp | ACCCCTCTTAATGAAGTGACTCAAAGTAGTAAGGGTTaGAATGATTCTGTATCTTCAGGATTTAAGCATCAG | + |
|
Preference number: 4 (lower is better) Translates to: TPLNEVTQSSKG*NDSVSSGFKHQ Trigger: CTGATGCTTAAATCCTGAAGATACAGAATCATTCAAACCCTTACTACTTTGAGTCACTTCATTAAGAGGGGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS TCA 90 bp | CGTGGGAGCCACGCTGAGCGTCTGCACCTCCAGTGTGCTGCTCCGTaGCAGACCCGCAGTCCCCTTTACCTTCACTGTCTTTGGCACATC | + |
|
Preference number: 5 (lower is better) Translates to: RGSHAERLHLQCAAP*QTRSPLYLHCLWHI Trigger: GATGTGCCAAAGACAGTGAAGGTAAAGGGGACTGCGGGTCTGTCACGGAGCAGCACACTGGAGGTGCAGACGCTCAGCGTGGCTCCCACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS CCA 90 bp | TGGGGGAGCGTGTCCGGATCCCACGTGTACTGGGGGCCTGATCTCTaGACTTCCAGGCCGCTTAGTCCCACCAGTGCTTCTGTTAGGATC | + |
|
Preference number: 5 (lower is better) Translates to: WGSVSGSHVYWGPDL*TSRPLSPTSASVRI Trigger: GATCCTAACAGAAGCACTGGTGGGACTAAGCGGCCTGGAAGTCCAGAGATCAGGCCCCCAGTACACGTGGGATCCGGACACGCTCCCCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS TCA 90 bp | GTTCTCCCCGCGTTCCCGCATCTCCTTCAGGAATGGGTGGTCTGCTaGCAGTTTCCTCTCCTTGTGCAAGTTCTCCAGAGCCGTGGGAGC | + |
|
Preference number: 5 (lower is better) Translates to: VLPAFPHLLQEWVVC*QFPLLVQVLQSRGS Trigger: GCTCCCACGGCTCTGGAGAACTTGCACAAGGAGAGGAAACTGTCAGCAGACCACCCATTCCTGAAGGAGATGCGGGAACGCGGGGAGAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS GCA 90 bp | GGAGAGTGTAGTCGGTGTGCACATAGCGGGCTCCCCAGAACAGTGTaGTCTTCCTCTTCCTCAGCACCAGGCAGAAGGGATGGAAGCGTT | + |
|
Preference number: 5 (lower is better) Translates to: GECSRCAHSGLPRTV*SSSSSAPGRRDGSV Trigger: AACGCTTCCATCCCTTCTGCCTGGTGCTGAGGAAGAGGAAGAGCACACTGTTCTGGGGAGCCCGCTATGTGCACACCGACTACACTCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CAA 90 bp | TCTGAGCACTGGGAGCATTTTCCAGCAGGCCTGAGGAACAGTGTGGGCAGTAACGCCAGAACACAGCCCTaGGGGATGGTTACAGCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: SEHWEHFPAGLRNSVGSNARTQP*GMVTAS Trigger: GGAGGCTGTAACCATCCCCAAGGGCTGTGTTCTGGC...GTTACTGCCCACACTGTTCCTCAGGCCTGCTGGAAAATGCTCCCAGTGCTCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CAA 90 bp | GGAGTTCACTCTGCAGACCAGGCTGGCCTCGAACTTAAGAGATTCACCTGCCTCGGAGAGCAGATCAGGTaGCAGGGGGAAAACACCCTC | + |
|
Preference number: 5 (lower is better) Translates to: GVHSADQAGLELKRFTCLGEQIR*QGENTL Trigger: GAGGGTGTTTTCCCCCTGCAACCTGATCTGCTCTCC...GAGGCAGGTGAATCTCTTAAGTTCGAGGCCAGCCTGGTCTGCAGAGTGAACTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS CCA 90 bp | CCATCAGTTGTCTCACTCGATAGGCCAGAACACAGCCCTTGGGGATaGTTACAGCCTCCTTGTGGTTCACGGATCCCTGTAGTCCCAGTG | + |
|
Preference number: 5 (lower is better) Translates to: PSVVSLDRPEHSPWG*LQPPCGSRIPVVPV Trigger: CACTGGGACTACAGGGATCCGTGAACCACAAGGAGGCTGTAACCATCCCCAAGGGCTGTGTTCTGGCCTATCGAGTGAGACAACTGATGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CAA 90 bp | ATTTTTGAGCTGGCATTTCAGTTGTCCTCAGCCTGGAGGCTCTGTAGTGTCTTGAAGCAGCCCTCTGCCTaGCCGGCTCGCTCCAGAGTG | + |
|
Preference number: 5 (lower is better) Translates to: IFELAFQLSSAWRLCSVLKQPSA*PARSRV Trigger: CACTCTGGAGCGAGCCGGCAAGGCAGAGGGCTGCTT...CAAGACACTACAGAGCCTCCAGGCTGAGGACAACTGAAATGCCAGCTCAAAAAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CAA 90 bp | TCTGAGCACTGGGAGCATTTTCCAGCAGGCCTGAGGAACAGTGTGGGCAGTAACGCCGTTGACCATCAGTaGTCTCACTCGATAGGCCAG | + |
|
Preference number: 5 (lower is better) Translates to: SEHWEHFPAGLRNSVGSNAVDHQ*SHSIGQ Trigger: CTGGCCTATCGAGTGAGACAACTGATGGTCAACGGC...GTTACTGCCCACACTGTTCCTCAGGCCTGCTGGAAAATGCTCCCAGTGCTCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CAA 90 bp | GGAGTTCACTCTGCAGACCAGGCTGGCCTCGAACTTAAGAGATTCACCTGCCTCGTCACTTCGTGTCCCTaGTCTAGAGCCCCTTCAAGC | + |
|
Preference number: 5 (lower is better) Translates to: GVHSADQAGLELKRFTCLVTSCP*SRAPSS Trigger: GCTTGAAGGGGCTCTAGACAAGGGACACGAAGTGAC...GAGGCAGGTGAATCTCTTAAGTTCGAGGCCAGCCTGGTCTGCAGAGTGAACTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CAA 90 bp | CTTGCAGTGTTACAGATGGAGCACAGTAAGGCTGGGAAGGCTTTAGGGCAGCAGGACAGTTTCCTCTCCTaGTGCAAGTTCTCCAGAGCC | + |
|
Preference number: 5 (lower is better) Translates to: LAVLQMEHSKAGKALGQQDSFLS*CKFSRA Trigger: GGCTCTGGAGAACTTGCACAAGGAGAGGAAACTGTC...CTGCTGCCCTAAAGCCTTCCCAGCCTTACTGTGCTCCATCTGTAACACTGCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CAA 90 bp | TCTGAGCACTGGGAGCATTTTCCAGCAGGCCTGAGGAACAGTGTGGGCAGTAACATGCCCCACTCATCTTaGCCGTTGACCATCAGTTGT | + |
|
Preference number: 5 (lower is better) Translates to: SEHWEHFPAGLRNSVGSNMPHSS*PLTISC Trigger: ACAACTGATGGTCAACGGCAAAGATGAGTGGGGCAT...GTTACTGCCCACACTGTTCCTCAGGCCTGCTGGAAAATGCTCCCAGTGCTCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS TCA 90 bp | TGCTGTCATTGCAAATGTGTGGAATGCCCCACTCATCTTTGCCGTTaGCCATCAGTTGTCTCACTCGATAGGCCAGAACACAGCCCTTGG | + |
|
Preference number: 5 (lower is better) Translates to: CCHCKCVECPTHLCR*PSVVSLDRPEHSPW Trigger: CCAAGGGCTGTGTTCTGGCCTATCGAGTGAGACAACTGATGGTCAACGGCAAAGATGAGTGGGGCATTCCACACATTTGCAATGACAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CAA 90 bp | CTTGCAGTGTTACAGATGGAGCACAGTAAGGCTGGGAAGGCTTTAGGGCAGCAGTTACCTTCACTGTCTTaGGCACATCCACATCTCCCT | + |
|
Preference number: 5 (lower is better) Translates to: LAVLQMEHSKAGKALGQQLPSLS*AHPHLP Trigger: AGGGAGATGTGGATGTGCCAAAGACAGTGAAGGTAA...CTGCTGCCCTAAAGCCTTCCCAGCCTTACTGTGCTCCATCTGTAACACTGCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CAA 90 bp | ATTTTTGAGCTGGCATTTCAGTTGTCCTCAGCCTGGAGGCTCTGTAGTGTCTTGATGGTTACAGCCTCCTaGTGGTTCACGGATCCCTGT | + |
|
Preference number: 5 (lower is better) Translates to: IFELAFQLSSAWRLCSVLMVTAS*WFTDPC Trigger: ACAGGGATCCGTGAACCACAAGGAGGCTGTAACCAT...CAAGACACTACAGAGCCTCCAGGCTGAGGACAACTGAAATGCCAGCTCAAAAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CAA 90 bp | AACAGTGTGGGCAGTAACGTGTATGTATGGATCATGGCTGTTTCTTTACCTGGGAAGGGATGGAAGCGTTaGAAGTCGATGAGGCTGTCT | + |
|
Preference number: 5 (lower is better) Translates to: NSVGSNVYVWIMAVSLPGKGWKR*KSMRLS Trigger: AGACAGCCTCATCGACTTCAAACGCTTCCATCCCTT...CCCAGGTAAAGAAACAGCCATGATCCATACATACACGTTACTGCCCACACTGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS CCA 90 bp | TTTAATGTCTTGAAGTCTTCGTGCATCTCCCCAACATCAGATGCCTaGATCAATATGAACTTCCCTTCTCCTGGCTTTTCTCCAGGAGGG | + |
|
Preference number: 5 (lower is better) Translates to: FNVLKSSCISPTSDA*INMNFPSPGFSPGG Trigger: CCCTCCTGGAGAAAAGCCAGGAGAAGGGAAGTTCATATTGATCCAGGCATCTGATGTTGGGGAGATGCACGAAGACTTCAAGACATTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CAA 90 bp | GTATCTTCAGGATTTAAGCATCAGGAGATGGGCTTAGTGGGTGCTGAGCTGGAGAACACCCTCTTTATCTaGCAGGAAGTTCTTCTCCAT | + |
|
Preference number: 5 (lower is better) Translates to: VSSGFKHQEMGLVGAELENTLFI*QEVLLH Trigger: ATGGAGAAGAACTTCCTGCAAGATAAAGAGGGTGTT...CTCCAGCTCAGCACCCACTAAGCCCATCTCCTGATGCTTAAATCCTGAAGATAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS GCA 90 bp | TCTTGCAGGAAGTTCTTCTCCATGGTGCTTTCAACCAGCTTCAGTTaGACCGGTAGGATCTTTTTCTCCAAGGATTTTACTAGAAGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: SCRKFFSMVLSTSFS*TGRIFFSKDFTRSF Trigger: GAAGCTTCTAGTAAAATCCTTGGAGAAAAAGATCCTACCGGTGCAACTGAAGCTGGTTGAAAGCACCATGGAGAAGAACTTCCTGCAAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CAA 90 bp | TTTGATCCAGTTCCTCATGCTGTGGTGACCCCCAACCATAGAATTATTTTCATTCACTCATCTTTGCCGTaGACCATCAGTTGTCTCACT | + |
|
Preference number: 5 (lower is better) Translates to: FDPVPHAVVTPNHRIIFIHSSLP*TISCLT Trigger: AGTGAGACAACTGATGGTCAACGGCAAAGATGAGTG...AATGAAAATAATTCTATGGTTGGGGGTCACCACAGCATGAGGAACTGGATCAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CAA 90 bp | TTTGATCCAGTTCCTCATGCTGTGGTGACCCCCAACCATAGAATTATTTTCATTGTTTGCATGCTGTCATaGCAAATGTGTGGAATGCCC | + |
|
Preference number: 5 (lower is better) Translates to: FDPVPHAVVTPNHRIIFIVCMLS*QMCGMP Trigger: GGGCATTCCACACATTTGCAATGACAGCATGCAAAC...AATGAAAATAATTCTATGGTTGGGGGTCACCACAGCATGAGGAACTGGATCAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS-3UTR CAA 90 bp | AGTAAGGGTTTGAATGATTCTGTATCTTCAGGATTTAAGCATCAGGAGATGGGCTTCTTAAAGCTAAAGTaGCCACTGTCTGTCGGATCT | + |
|
Preference number: 5 (lower is better) Translates to: SKGLNDSVSSGFKHQEMGFLKLK*PLSVGS Trigger: AGATCCGACAGACAGTGGCAACTTTAGCTTTAAGAA...GCCCATCTCCTGATGCTTAAATCCTGAAGATACAGAATCATTCAAACCCTTACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS CCA 72 bp | CAAAGGTGGGGGAGCGTGTCCGGATCCCACGTGTACTaGGGGCCTGATCTCTGGACTTCCAGGCCGCTTAGT | + |
|
Preference number: 6 (lower is better) Translates to: QRWGSVSGSHVY*GPDLWTSRPLS Trigger: ACTAAGCGGCCTGGAAGTCCAGAGATCAGGCCCCCAGTACACGTGGGATCCGGACACGCTCCCCCACCTTTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS CCA 72 bp | GTGTCCGGATCCCACGTGTACTGGGGGCCTGATCTCTaGACTTCCAGGCCGCTTAGTCCCACCAGTGCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: VSGSHVYWGPDL*TSRPLSPTSAS Trigger: AGAAGCACTGGTGGGACTAAGCGGCCTGGAAGTCCAGAGATCAGGCCCCCAGTACACGTGGGATCCGGACAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS TCA 72 bp | CACGCTGAGCGTCTGCACCTCCAGTGTGCTGCTCCGTaGCAGACCCGCAGTCCCCTTTACCTTCACTGTCTT | + |
|
Preference number: 6 (lower is better) Translates to: HAERLHLQCAAP*QTRSPLYLHCL Trigger: AAGACAGTGAAGGTAAAGGGGACTGCGGGTCTGTCACGGAGCAGCACACTGGAGGTGCAGACGCTCAGCGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS CAA 72 bp | GCCAGAACACAGCCCTTGGGGATGGTTACAGCCTCCTaGTGGTTCACGGATCCCTGTAGTCCCAGTGGGGCA | + |
|
Preference number: 6 (lower is better) Translates to: ARTQPLGMVTAS*WFTDPCSPSGA Trigger: TGCCCCACTGGGACTACAGGGATCCGTGAACCACAAGGAGGCTGTAACCATCCCCAAGGGCTGTGTTCTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS CCA 72 bp | AGAACACAGCCCTTGGGGATGGTTACAGCCTCCTTGTaGTTCACGGATCCCTGTAGTCCCAGTGGGGCAAAG | + |
|
Preference number: 6 (lower is better) Translates to: RTQPLGMVTASL*FTDPCSPSGAK Trigger: CTTTGCCCCACTGGGACTACAGGGATCCGTGAACCACAAGGAGGCTGTAACCATCCCCAAGGGCTGTGTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS TCA 72 bp | GCGTTCCCGCATCTCCTTCAGGAATGGGTGGTCTGCTaGCAGTTTCCTCTCCTTGTGCAAGTTCTCCAGAGC | + |
|
Preference number: 6 (lower is better) Translates to: AFPHLLQEWVVC*QFPLLVQVLQS Trigger: GCTCTGGAGAACTTGCACAAGGAGAGGAAACTGTCAGCAGACCACCCATTCCTGAAGGAGATGCGGGAACGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS TCA 72 bp | CCCGAGGAAGTAAAGGATGGCGTCCATAGCGTCCTTTaGCAGCAGGACATCTTTGGGGAGTGCTTCCAGGGT | + |
|
Preference number: 6 (lower is better) Translates to: PEEVKDGVHSVL*QQDIFGECFQG Trigger: ACCCTGGAAGCACTCCCCAAAGATGTCCTGCTGTCAAAGGACGCTATGGACGCCATCCTTTACTTCCTCGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS CAA 90 bp | ACATCTCCCTCTACTCGAGCATCCAGCATATTCTTAAAGCTAAAGTaGCCACTGTCTGTCGGATCTGAGGGGGAGCTGCCCGGCTCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: TSPSTRASSIFLKLK*PLSVGSEGELPGSS Trigger: GCTGGAGCCGGGCAGCTCCCCCTCAGATCCGACAGACAGTGGCAACTTTAGCTTTAAGAATATGCTGGATGCTCGAGTAGAGGGAGATGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS CAA 72 bp | GTGACAGACCCGCAGTCCCCTTTACCTTCACTGTCTTaGGCACATCCACATCTCCCTCTACTCGAGCATCCA | + |
|
Preference number: 6 (lower is better) Translates to: VTDPQSPLPSLS*AHPHLPLLEHP Trigger: TGGATGCTCGAGTAGAGGGAGATGTGGATGTGCCAAAGACAGTGAAGGTAAAGGGGACTGCGGGTCTGTCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS CAA 72 bp | TGGAATGCCCCACTCATCTTTGCCGTTGACCATCAGTaGTCTCACTCGATAGGCCAGAACACAGCCCTTGGG | + |
|
Preference number: 6 (lower is better) Translates to: WNAPLIFAVDHQ*SHSIGQNTALG Trigger: CCCAAGGGCTGTGTTCTGGCCTATCGAGTGAGACAACTGATGGTCAACGGCAAAGATGAGTGGGGCATTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS CAA 90 bp | TGCTGCTCCGTGACAGACCCGCAGTCCCCTTTACCTTCACTGTCTTaGGCACATCCACATCTCCCTCTACTCGAGCATCCAGCATATTCT | + |
|
Preference number: 6 (lower is better) Translates to: CCSVTDPQSPLPSLS*AHPHLPLLEHPAYS Trigger: AGAATATGCTGGATGCTCGAGTAGAGGGAGATGTGGATGTGCCAAAGACAGTGAAGGTAAAGGGGACTGCGGGTCTGTCACGGAGCAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS GCA 72 bp | ACTTCGTGTCCCTTGTCTAGAGCCCCTTCAAGCGTCTaGTCAAGGTCCTGGAGCTCTTTCTTCTTTCCTAGG | + |
|
Preference number: 6 (lower is better) Translates to: TSCPLSRAPSSV*SRSWSSFFFPR Trigger: CCTAGGAAAGAAGAAAGAGCTCCAGGACCTTGAGCAGACGCTTGAAGGGGCTCTAGACAAGGGACACGAAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS CCA 72 bp | TTGTCTAGAGCCCCTTCAAGCGTCTGCTCAAGGTCCTaGAGCTCTTTCTTCTTTCCTAGGAGATGGCTGAGG | + |
|
Preference number: 6 (lower is better) Translates to: LSRAPSSVCSRS*SSFFFPRRWLR Trigger: CCTCAGCCATCTCCTAGGAAAGAAGAAAGAGCTCCAGGACCTTGAGCAGACGCTTGAAGGGGCTCTAGACAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS CAA 90 bp | GCAAATGTGTGGAATGCCCCACTCATCTTTGCCGTTGACCATCAGTaGTCTCACTCGATAGGCCAGAACACAGCCCTTGGGGATGGTTAC | + |
|
Preference number: 6 (lower is better) Translates to: ANVWNAPLIFAVDHQ*SHSIGQNTALGDGY Trigger: GTAACCATCCCCAAGGGCTGTGTTCTGGCCTATCGAGTGAGACAACTGATGGTCAACGGCAAAGATGAGTGGGGCATTCCACACATTTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS TCA 72 bp | CGTGCATCTCCCCAACATCAGATGCCTGGATCAATATaGACTTCCCTTCTCCTGGCTTTTCTCCAGGAGGGA | + |
|
Preference number: 6 (lower is better) Translates to: RASPQHQMPGSI*TSLLLAFLQEG Trigger: TCCCTCCTGGAGAAAAGCCAGGAGAAGGGAAGTTCATATTGATCCAGGCATCTGATGTTGGGGAGATGCACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS CAA 72 bp | TCTACTCGAGCATCCAGCATATTCTTAAAGCTAAAGTaGCCACTGTCTGTCGGATCTGAGGGGGAGCTGCCC | + |
|
Preference number: 6 (lower is better) Translates to: STRASSIFLKLK*PLSVGSEGELP Trigger: GGGCAGCTCCCCCTCAGATCCGACAGACAGTGGCAACTTTAGCTTTAAGAATATGCTGGATGCTCGAGTAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS CAA 90 bp | GGAGGAGAGCAGATCAGGTTGCAGGGGGAAAACACCCTCTTTATCTaGCAGGAAGTTCTTCTCCATGGTGCTTTCAACCAGCTTCAGTTG | + |
|
Preference number: 6 (lower is better) Translates to: GGEQIRLQGENTLFI*QEVLLHGAFNQLQL Trigger: CAACTGAAGCTGGTTGAAAGCACCATGGAGAAGAACTTCCTGCAAGATAAAGAGGGTGTTTTCCCCCTGCAACCTGATCTGCTCTCCTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS TCA 72 bp | CCTGAGTCTCTCGCTGAACCTCTTCCTTTAATGTCTTaGAGTCTTCGTGCATCTCCCCAACATCAGATGCCT | + |
|
Preference number: 6 (lower is better) Translates to: PESLAEPLPLMS*SLRASPQHQMP Trigger: AGGCATCTGATGTTGGGGAGATGCACGAAGACTTCAAGACATTAAAGGAAGAGGTTCAGCGAGAGACTCAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS CAA 72 bp | CAGATCAGGTTGCAGGGGGAAAACACCCTCTTTATCTaGCAGGAAGTTCTTCTCCATGGTGCTTTCAACCAG | + |
|
Preference number: 6 (lower is better) Translates to: QIRLQGENTLFI*QEVLLHGAFNQ Trigger: CTGGTTGAAAGCACCATGGAGAAGAACTTCCTGCAAGATAAAGAGGGTGTTTTCCCCCTGCAACCTGATCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS GCA 72 bp | TGTCTTGAAGTCTTCGTGCATCTCCCCAACATCAGATaGCTGGATCAATATGAACTTCCCTTCTCCTGGCTT | + |
|
Preference number: 6 (lower is better) Translates to: CLEVFVHLPNIR*LDQYELPFSWL Trigger: AAGCCAGGAGAAGGGAAGTTCATATTGATCCAGGCATCTGATGTTGGGGAGATGCACGAAGACTTCAAGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS CCA 72 bp | TTGAAGTCTTCGTGCATCTCCCCAACATCAGATGCCTaGATCAATATGAACTTCCCTTCTCCTGGCTTTTCT | + |
|
Preference number: 6 (lower is better) Translates to: LKSSCISPTSDA*INMNFPSPGFS Trigger: AGAAAAGCCAGGAGAAGGGAAGTTCATATTGATCCAGGCATCTGATGTTGGGGAGATGCACGAAGACTTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||
| CDS GCA 72 bp | AAGTTCTTCTCCATGGTGCTTTCAACCAGCTTCAGTTaGACCGGTAGGATCTTTTTCTCCAAGGATTTTACT | + |
|
Preference number: 6 (lower is better) Translates to: KFFSMVLSTSFS*TGRIFFSKDFT Trigger: AGTAAAATCCTTGGAGAAAAAGATCCTACCGGTGCAACTGAAGCTGGTTGAAAGCACCATGGAGAAGAACTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017348.3 |
||