Pregenerated sensors for GSC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022738Ensembl transcript IDs: ENSMUST00000012279.6, ENSMUST00000232493.2
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCAGGAGGTCTCTGGTTCCTGCCCCACATGCCCTCCCTTCATGGGTaGGAAGGCGGCTTTGGATCCCCTGGCTGCCAGTGCTGGCAGCGT | + |
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Preference number: 1 (lower is better) Translates to: AGGLWFLPHMPSLHG*EGGFGSPGCQCWQR Trigger: ACGCTGCCAGCACTGGCAGCCAGGGGATCCAAAGCCGCCTTCTCACCCATGAAGGGAGGGCATGTGGGGCAGGAACCAGAGACCTCCTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR CCA 90 bp | ACCTGCAGGAGGTCTCTGGTTCCTGCCCCACATGCCCTCCCTTCATaGGTGAGAAGGCGGCTTTGGATCCCCTGGCTGCCAGTGCTGGCA | + |
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Preference number: 1 (lower is better) Translates to: TCRRSLVPAPHALPS*VRRRLWIPWLPVLA Trigger: TGCCAGCACTGGCAGCCAGGGGATCCAAAGCCGCCTTCTCACCCATGAAGGGAGGGCATGTGGGGCAGGAACCAGAGACCTCCTGCAGGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR CCA 90 bp | GTTCCTGCCCCACATGCCCTCCCTTCATGGGTGAGAAGGCGGCTTTaGATCCCCTGGCTGCCAGTGCTGGCAGCGTTAGTTCCTGTTCAG | + |
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Preference number: 1 (lower is better) Translates to: VPAPHALPSWVRRRL*IPWLPVLAALVPVQ Trigger: CTGAACAGGAACTAACGCTGCCAGCACTGGCAGCCAGGGGATCCAAAGCCGCCTTCTCACCCATGAAGGGAGGGCATGTGGGGCAGGAAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR CCA 90 bp | GGTGGAAGGACAGAGAAGAGGCCAGTCTTGGTGACAGGCATGAGGTaGGGAGTTAGGCTCTTCGTCCTGCATGGAGCTAGGGCTTCTCTA | + |
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Preference number: 1 (lower is better) Translates to: GGRTEKRPVLVTGMR*GVRLFVLHGARASL Trigger: TAGAGAAGCCCTAGCTCCATGCAGGACGAAGAGCCTAACTCCCCACCTCATGCCTGTCACCAAGACTGGCCTCTTCTCTGTCCTTCCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR CCA 90 bp | AGTACGCCCAGGGCTGAGCAGACACCACTGCCTTGCATAAGAAGGTaGAAGGACAGAGAAGAGGCCAGTCTTGGTGACAGGCATGAGGTG | + |
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Preference number: 1 (lower is better) Translates to: STPRAEQTPLPCIRR*KDREEASLGDRHEV Trigger: CACCTCATGCCTGTCACCAAGACTGGCCTCTTCTCTGTCCTTCCACCTTCTTATGCAAGGCAGTGGTGTCTGCTCAGCCCTGGGCGTACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR CAA 90 bp | GGTTCCTGCCCCACATGCCCTCCCTTCATGGGTGAGAAGGCGGCTTaGGATCCCCTGGCTGCCAGTGCTGGCAGCGTTAGTTCCTGTTCA | + |
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Preference number: 2 (lower is better) Translates to: GSCPTCPPFMGEKAA*DPLAASAGSVSSCS Trigger: TGAACAGGAACTAACGCTGCCAGCACTGGCAGCCAGGGGATCCAAAGCCGCCTTCTCACCCATGAAGGGAGGGCATGTGGGGCAGGAACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR-3UTR GCA 90 bp | GGTCATGACACCAGGGCCCTAAAGTGCAGGGCCTGTGAGGACAGAGTACGCCCAGAGGTCTCTGGTTCCTaGCCCACATGCCCTCCCTTC | + |
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Preference number: 2 (lower is better) Translates to: GHDTRALKCRACEDRVRPEVSGS*PTCPPF Trigger: GAAGGGAGGGCATGTGGGGCAGGAACCAGAGACCTC...TGGGCGTACTCTGTCCTCACAGGCCCTGCACTTTAGGGCCCTGGTGTCATGACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR-3UTR CCA 90 bp | ACAGGTCATGACACCAGGGCCCTAAAGTGCAGGGCCTGTGAGGACAGAGTACGCCCTGCAGGAGGTCTCTaGTTCCTGCCCCACATGCCC | + |
|
Preference number: 2 (lower is better) Translates to: TGHDTRALKCRACEDRVRPAGGL*FLPHMP Trigger: GGGCATGTGGGGCAGGAACCAGAGACCTCCTGCAGG...GCGTACTCTGTCCTCACAGGCCCTGCACTTTAGGGCCCTGGTGTCATGACCTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR-3UTR GCA 90 bp | GACACCAGGGCCCTAAAGTGCAGGGCCTGTGAGGACAGAGTACGCCCAGGGCTGTGTCTGCACTTGACCTaGAGGAGGTCTCTGGTTCCT | + |
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Preference number: 2 (lower is better) Translates to: DTRALKCRACEDRVRPGLCLHLT*RRSLVP Trigger: AGGAACCAGAGACCTCCTGCAGGTCAAGTGCAGACA...CAGCCCTGGGCGTACTCTGTCCTCACAGGCCCTGCACTTTAGGGCCCTGGTGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR-3UTR TCA 90 bp | ACAGGTCATGACACCAGGGCCCTAAAGTGCAGGGCCTGTGAGGACAGAGTACGCGGCTTCTCTAGGTGCTaGGGGTGGCTGAGGAAGTTG | + |
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Preference number: 2 (lower is better) Translates to: TGHDTRALKCRACEDRVRGFSRC*GWLRKL Trigger: CAACTTCCTCAGCCACCCTCAGCACCTAGAGAAGCC...GCGTACTCTGTCCTCACAGGCCCTGCACTTTAGGGCCCTGGTGTCATGACCTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR-3UTR GCA 90 bp | GACACCAGGGCCCTAAAGTGCAGGGCCTGTGAGGACAGAGTACGCCCAGGGCTGCAGACACCACTGCCTTaGATAAGAAGGTGGAAGGAC | + |
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Preference number: 2 (lower is better) Translates to: DTRALKCRACEDRVRPGLQTPLP*IRRWKD Trigger: GTCCTTCCACCTTCTTATGCAAGGCAGTGGTGTCTG...CAGCCCTGGGCGTACTCTGTCCTCACAGGCCCTGCACTTTAGGGCCCTGGTGTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR-3UTR GCA 90 bp | CTACAACCTTCTTCTTCCACAGGTCATGACACCAGGGCCCTAAAGTGCAGGGCCGGTTCCTGCCCCACATaGCCTCCCTTCATGGGTGAG | + |
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Preference number: 2 (lower is better) Translates to: LQPSSSTGHDTRALKCRAGSCPT*PPFMGE Trigger: CTCACCCATGAAGGGAGGGCATGTGGGGCAGGAACC...GGCCCTGCACTTTAGGGCCCTGGTGTCATGACCTGTGGAAGAAGAAGGTTGTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR-3UTR CCA 90 bp | CAACCTTCTTCTTCCACAGGTCATGACACCAGGGCCCTAAAGTGCAGGGCCTGTGTGACAGGCATGAGGTaGGGAGTTAGGCTCTTCGTC | + |
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Preference number: 2 (lower is better) Translates to: QPSSSTGHDTRALKCRACVTGMR*GVRLFV Trigger: GACGAAGAGCCTAACTCCCCACCTCATGCCTGTCAC...ACAGGCCCTGCACTTTAGGGCCCTGGTGTCATGACCTGTGGAAGAAGAAGGTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR-3UTR TCA 90 bp | TACCAACTACAACCTTCTTCTTCCACAGGTCATGACACCAGGGCCCTAAAGTGCCCCTCCCTTCATGGGTaGGAAGGCGGCTTTGGATCC | + |
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Preference number: 2 (lower is better) Translates to: YQLQPSSSTGHDTRALKCPSLHG*EGGFGS Trigger: GGATCCAAAGCCGCCTTCTCACCCATGAAGGGAGGG...GCACTTTAGGGCCCTGGTGTCATGACCTGTGGAAGAAGAAGGTTGTAGTTGGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR-3UTR TCA 90 bp | TCGTTTATTTCTTGGCATCAGCTCAAGGCTGAGGTGAAGGAGCAGATGCAGGAAAAAGTGCAGGGCCTGTaGGGACAGAGTACGCCCAGG | + |
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Preference number: 2 (lower is better) Translates to: SFISWHQLKAEVKEQMQEKVQGL*GQSTPR Trigger: CCTGGGCGTACTCTGTCCTCACAGGCCCTGCACTTT...TTCCTGCATCTGCTCCTTCACCTCAGCCTTGAGCTGATGCCAAGAAATAAACGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR TCA 72 bp | CTCTGGTTCCTGCCCCACATGCCCTCCCTTCATGGGTaGGAAGGCGGCTTTGGATCCCCTGGCTGCCAGTGC | + |
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Preference number: 3 (lower is better) Translates to: LWFLPHMPSLHG*EGGFGSPGCQC Trigger: GCACTGGCAGCCAGGGGATCCAAAGCCGCCTTCTCACCCATGAAGGGAGGGCATGTGGGGCAGGAACCAGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR CCA 72 bp | AGGTCTCTGGTTCCTGCCCCACATGCCCTCCCTTCATaGGTGAGAAGGCGGCTTTGGATCCCCTGGCTGCCA | + |
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Preference number: 3 (lower is better) Translates to: RSLVPAPHALPS*VRRRLWIPWLP Trigger: TGGCAGCCAGGGGATCCAAAGCCGCCTTCTCACCCATGAAGGGAGGGCATGTGGGGCAGGAACCAGAGACCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR CCA 72 bp | CCACATGCCCTCCCTTCATGGGTGAGAAGGCGGCTTTaGATCCCCTGGCTGCCAGTGCTGGCAGCGTTAGTT | + |
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Preference number: 3 (lower is better) Translates to: PHALPSWVRRRL*IPWLPVLAALV Trigger: AACTAACGCTGCCAGCACTGGCAGCCAGGGGATCCAAAGCCGCCTTCTCACCCATGAAGGGAGGGCATGTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR-3UTR CAA 90 bp | ACAGGTCATGACACCAGGGCCCTAAAGTGCAGGGCCTGTGAGGACAGAGTACGCGGGTGGCTGAGGAAGTaGACCTGCTCTGTGTCTGCA | + |
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Preference number: 3 (lower is better) Translates to: TGHDTRALKCRACEDRVRGWLRK*TCSVSA Trigger: TGCAGACACAGAGCAGGTCAACTTCCTCAGCCACCC...GCGTACTCTGTCCTCACAGGCCCTGCACTTTAGGGCCCTGGTGTCATGACCTGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR TCA 72 bp | AGTGCAGGGCCTGTGAGGACAGAGTACGCCCAGGGCTaGGCAGACACCACTGCCTTGCATAAGAAGGTGGAA | + |
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Preference number: 3 (lower is better) Translates to: SAGPVRTEYAQG*ADTTALHKKVE Trigger: TTCCACCTTCTTATGCAAGGCAGTGGTGTCTGCTCAGCCCTGGGCGTACTCTGTCCTCACAGGCCCTGCACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR CCA 72 bp | ACAGAGAAGAGGCCAGTCTTGGTGACAGGCATGAGGTaGGGAGTTAGGCTCTTCGTCCTGCATGGAGCTAGG | + |
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Preference number: 3 (lower is better) Translates to: TEKRPVLVTGMR*GVRLFVLHGAR Trigger: CCTAGCTCCATGCAGGACGAAGAGCCTAACTCCCCACCTCATGCCTGTCACCAAGACTGGCCTCTTCTCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR-3UTR CAA 90 bp | CAACCTTCTTCTTCCACAGGTCATGACACCAGGGCCCTAAAGTGCAGGGCCTGTGCAGACACCACTGCCTaGCATAAGAAGGTGGAAGGA | + |
|
Preference number: 3 (lower is better) Translates to: QPSSSTGHDTRALKCRACADTTA*HKKVEG Trigger: TCCTTCCACCTTCTTATGCAAGGCAGTGGTGTCTGC...ACAGGCCCTGCACTTTAGGGCCCTGGTGTCATGACCTGTGGAAGAAGAAGGTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| CDS-3UTR GCA 90 bp | GGTCATGACACCAGGGCCCTAAAGTGCAGGGCCTGTGAGGACAGAGTACGCCCAAGTGCCTCGAGCGCCTaGAGCTGCTCCTCGCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: GHDTRALKCRACEDRVRPSASSA*SCSSLK Trigger: CTTCAGCGAGGAGCAGCTGCAGGCGCTCGAGGCACT...TGGGCGTACTCTGTCCTCACAGGCCCTGCACTTTAGGGCCCTGGTGTCATGACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| CDS-3UTR GCA 90 bp | GACACCAGGGCCCTAAAGTGCAGGGCCTGTGAGGACAGAGTACGCCCAGGGCTGGTTCTGTACGAAGAGTaGCTCGAGCGCCTGCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: DTRALKCRACEDRVRPGLVLYEE*LERLQL Trigger: CAGCTGCAGGCGCTCGAGGCACTCTTCGTACAGAAC...CAGCCCTGGGCGTACTCTGTCCTCACAGGCCCTGCACTTTAGGGCCCTGGTGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| CDS-3UTR CCA 90 bp | GGGTGGCTGAGGAAGTTGACCTGCTCTGTGTCTGCACTTGACCTGCAGGAGGTCCTGAAGATGGTACGGTaGCGCCGCGTGCGCCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: GWLRKLTCSVSALDLQEVLKMVR*RRVRLC Trigger: GCAGAGGCGCACGCGGCGCCACCGTACCATCTTCAG...GACCTCCTGCAGGTCAAGTGCAGACACAGAGCAGGTCAACTTCCTCAGCCACCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| 3UTR CAA 72 bp | CCCACATGCCCTCCCTTCATGGGTGAGAAGGCGGCTTaGGATCCCCTGGCTGCCAGTGCTGGCAGCGTTAGT | + |
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Preference number: 4 (lower is better) Translates to: PTCPPFMGEKAA*DPLAASAGSVS Trigger: ACTAACGCTGCCAGCACTGGCAGCCAGGGGATCCAAAGCCGCCTTCTCACCCATGAAGGGAGGGCATGTGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| CDS-3UTR TCA 90 bp | GGGTGGCTGAGGAAGTTGACCTGCTCTGTGTCTGCACTTGACCTGCAGGAGGTCTTGCCCGGCGGTTCTTaGACCAGACCTCCACGCGCT | + |
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Preference number: 4 (lower is better) Translates to: GWLRKLTCSVSALDLQEVLPGGS*TRPPRA Trigger: AGCGCGTGGAGGTCTGGTTCAAGAACCGCCGGGCAA...GACCTCCTGCAGGTCAAGTGCAGACACAGAGCAGGTCAACTTCCTCAGCCACCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| CDS-3UTR TCA 90 bp | TCCCCCTCCTCCTTCCTTGTGCTCTACTTCATAAAGCCAGATAAACTCCGGACAGCAGCTGCTCCTCGCTaGAGATGGTACGGTGGCGCC | + |
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Preference number: 4 (lower is better) Translates to: SPSSFLVLYFIKPDKLRTAAAPR*RWYGGA Trigger: GGCGCCACCGTACCATCTTCAGCGAGGAGCAGCTGC...TGTCCGGAGTTTATCTGGCTTTATGAAGTAGAGCACAAGGAAGGAGGAGGGGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS-3UTR TCA 90 bp | CCCTCCTCCTTCCTTGTGCTCTACTTCATAAAGCCAGATAAACTCCGGACAGCAGCAGCTGCTCCTCGCTaGAGATGGTACGGTGGCGCC | + |
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Preference number: 4 (lower is better) Translates to: PSSFLVLYFIKPDKLRTAAAAPR*RWYGGA Trigger: GGCGCCACCGTACCATCTTCAGCGAGGAGCAGCTGC...TGCTGTCCGGAGTTTATCTGGCTTTATGAAGTAGAGCACAAGGAAGGAGGAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS-3UTR TCA 90 bp | TCCCCCTCCTCCTTCCTTGTGCTCTACTTCATAAAGCCAGATAAACTCCGGACATTGCCCGGCGGTTCTTaGACCAGACCTCCACGCGCT | + |
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Preference number: 4 (lower is better) Translates to: SPSSFLVLYFIKPDKLRTLPGGS*TRPPRA Trigger: AGCGCGTGGAGGTCTGGTTCAAGAACCGCCGGGCAA...TGTCCGGAGTTTATCTGGCTTTATGAAGTAGAGCACAAGGAAGGAGGAGGGGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS-3UTR GCA 90 bp | AGGAAGTTGACCTGCTCTGTGTCTGCACTTGACCTGCAGGAGGTCTCTGGTTCCAGGCTGGAGAGGATGTaGTCGATGGAGAAAGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: RKLTCSVSALDLQEVSGSRLERM*SMEKGQ Trigger: CTGCCCTTTCTCCATCGAGCACATCCTCTCCAGCCT...GGAACCAGAGACCTCCTGCAGGTCAAGTGCAGACACAGAGCAGGTCAACTTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| CDS-3UTR GCA 90 bp | TCCCCCTCCTCCTTCCTTGTGCTCTACTTCATAAAGCCAGATAAACTCCGGACAAGTGCCTCGAGCGCCTaGAGCTGCTCCTCGCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: SPSSFLVLYFIKPDKLRTSASSA*SCSSLK Trigger: CTTCAGCGAGGAGCAGCTGCAGGCGCTCGAGGCACT...TGTCCGGAGTTTATCTGGCTTTATGAAGTAGAGCACAAGGAAGGAGGAGGGGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS-3UTR CCA 90 bp | CCCTCCTCCTTCCTTGTGCTCTACTTCATAAAGCCAGATAAACTCCGGACAGCATGCGCTCCGGCAGGCTaGAGAGGATGTGCTCGATGG | + |
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Preference number: 4 (lower is better) Translates to: PSSFLVLYFIKPDKLRTACAPAG*RGCARW Trigger: CCATCGAGCACATCCTCTCCAGCCTGCCGGAGCGCA...TGCTGTCCGGAGTTTATCTGGCTTTATGAAGTAGAGCACAAGGAAGGAGGAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS-3UTR GCA 90 bp | CCCTCCTCCTTCCTTGTGCTCTACTTCATAAAGCCAGATAAACTCCGGACAGCATCGAGCGCCTGCAGCTaGTCCTCGCTGAAGATGGTA | + |
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Preference number: 4 (lower is better) Translates to: PSSFLVLYFIKPDKLRTASSACS*SSLKMV Trigger: TACCATCTTCAGCGAGGAGCAGCTGCAGGCGCTCGA...TGCTGTCCGGAGTTTATCTGGCTTTATGAAGTAGAGCACAAGGAAGGAGGAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS-3UTR GCA 90 bp | TCCCCCTCCTCCTTCCTTGTGCTCTACTTCATAAAGCCAGATAAACTCCGGACAGTTCTGTACGAAGAGTaGCTCGAGCGCCTGCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: SPSSFLVLYFIKPDKLRTVLYEE*LERLQL Trigger: CAGCTGCAGGCGCTCGAGGCACTCTTCGTACAGAAC...TGTCCGGAGTTTATCTGGCTTTATGAAGTAGAGCACAAGGAAGGAGGAGGGGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS-3UTR CCA 90 bp | TCCCCCTCCTCCTTCCTTGTGCTCTACTTCATAAAGCCAGATAAACTCCGGACAAGAGGATGTGCTCGATaGAGAAAGGGCAGGGTCGCC | + |
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Preference number: 4 (lower is better) Translates to: SPSSFLVLYFIKPDKLRTRGCAR*RKGRVA Trigger: GGCGACCCTGCCCTTTCTCCATCGAGCACATCCTCT...TGTCCGGAGTTTATCTGGCTTTATGAAGTAGAGCACAAGGAAGGAGGAGGGGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS-3UTR CCA 90 bp | CAGGAATCTGGAAACTACCAACTACAACCTTCTTCTTCCACAGGTCATGACACCTGCGCTCCGGCAGGCTaGAGAGGATGTGCTCGATGG | + |
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Preference number: 4 (lower is better) Translates to: QESGNYQLQPSSSTGHDTCAPAG*RGCARW Trigger: CCATCGAGCACATCCTCTCCAGCCTGCCGGAGCGCA...GGTGTCATGACCTGTGGAAGAAGAAGGTTGTAGTTGGTAGTTTCCAGATTCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| CDS-3UTR GCA 90 bp | CCCTCCTCCTTCCTTGTGCTCTACTTCATAAAGCCAGATAAACTCCGGACAGCAAGGCTGGAGAGGATGTaGTCGATGGAGAAAGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: PSSFLVLYFIKPDKLRTARLERM*SMEKGQ Trigger: CTGCCCTTTCTCCATCGAGCACATCCTCTCCAGCCT...TGCTGTCCGGAGTTTATCTGGCTTTATGAAGTAGAGCACAAGGAAGGAGGAGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS-3UTR CCA 90 bp | TCGTTTATTTCTTGGCATCAGCTCAAGGCTGAGGTGAAGGAGCAGATGCAGGAAAGAGGATGTGCTCGATaGAGAAAGGGCAGGGTCGCC | + |
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Preference number: 4 (lower is better) Translates to: SFISWHQLKAEVKEQMQERGCAR*RKGRVA Trigger: GGCGACCCTGCCCTTTCTCCATCGAGCACATCCTCT...TTCCTGCATCTGCTCCTTCACCTCAGCCTTGAGCTGATGCCAAGAAATAAACGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012279.6 |
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| CDS GCA 90 bp | TGGAGAAAGGGCAGGGTCGCCCGGGGTCCCTGCGGCTGGCCGCGCTaGCTGCAGTCGCCATGCCCGCGGGCGGGCGGCGCAAGAGGCGGA | + |
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Preference number: 5 (lower is better) Translates to: WRKGRVARGPCGWPR*LQSPCPRAGGARGG Trigger: TCCGCCTCTTGCGCCGCCCGCCCGCGGGCATGGCGACTGCAGGCAGCGCGGCCAGCCGCAGGGACCCCGGGCGACCCTGCCCTTTCTCCA 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232493.2 |
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| CDS CCA 90 bp | TGTGCTCGATGGAGAAAGGGCAGGGTCGCCCGGGGTCCCTGCGGCTaGCCGCGCTGCCTGCAGTCGCCATGCCCGCGGGCGGGCGGCGCA | + |
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Preference number: 5 (lower is better) Translates to: CARWRKGRVARGPCG*PRCLQSPCPRAGGA Trigger: TGCGCCGCCCGCCCGCGGGCATGGCGACTGCAGGCAGCGCGGCCAGCCGCAGGGACCCCGGGCGACCCTGCCCTTTCTCCATCGAGCACA 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232493.2 |
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| CDS GCA 90 bp | GAAAGGGCAGGGTCGCCCGGGGTCCCTGCGGCTGGCCGCGCTGCCTaGAGTCGCCATGCCCGCGGGCGGGCGGCGCAAGAGGCGGAATAT | + |
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Preference number: 5 (lower is better) Translates to: ERAGSPGVPAAGRAA*SRHARGRAAQEAEY Trigger: ATATTCCGCCTCTTGCGCCGCCCGCCCGCGGGCATGGCGACTGCAGGCAGCGCGGCCAGCCGCAGGGACCCCGGGCGACCCTGCCCTTTC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232493.2 |
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| CDS CCA 90 bp | GCGTCGCGGGCCTGCGCTCCGGCAGGCTGGAGAGGATGTGCTCGATaGAGAAAGGGCAGGGTCGCCCGGGGTCCCTGCGGCTGGCCGCGC | + |
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Preference number: 5 (lower is better) Translates to: ASRACAPAGWRGCAR*RKGRVARGPCGWPR Trigger: GCGCGGCCAGCCGCAGGGACCCCGGGCGACCCTGCCCTTTCTCCATCGAGCACATCCTCTCCAGCCTGCCGGAGCGCAGGCCCGCGACGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS GCA 90 bp | GGTGGCCGCGTCGCGGGCCTGCGCTCCGGCAGGCTGGAGAGGATGTaGTCGATGGAGAAAGGGCAGGGTCGCCCGGGGTCCCTGCGGCTG | + |
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Preference number: 5 (lower is better) Translates to: GGRVAGLRSGRLERM*SMEKGQGRPGSLRL Trigger: CAGCCGCAGGGACCCCGGGCGACCCTGCCCTTTCTCCATCGAGCACATCCTCTCCAGCCTGCCGGAGCGCAGGCCCGCGACGCGGCCACC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS GCA 90 bp | CGGGGTTCCGACCACCGACGGGCTGCGGTGGCCGCGTCGCGGGCCTaGGCTCCGGCAGGCTGGAGAGGATGTGCTCGATGGAGAAAGGGC | + |
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Preference number: 5 (lower is better) Translates to: RGSDHRRAAVAASRA*APAGWRGCARWRKG Trigger: GCCCTTTCTCCATCGAGCACATCCTCTCCAGCCTGCCGGAGCGCAGGCCCGCGACGCGGCCACCGCAGCCCGTCGGTGGTCGGAACCCCG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS GCA 90 bp | CGCGCTCCTCTCGCAGGCGGATGCGGACCGCCAAGCGTTCGCGTGTaGCTACGTCGGGATACTGGTTCTGTACGAAGAGTGCCTCGAGCG | + |
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Preference number: 5 (lower is better) Translates to: RAPLAGGCGPPSVRV*LRRDTGSVRRVPRA Trigger: CGCTCGAGGCACTCTTCGTACAGAACCAGTATCCCGACGTAGGCACACGCGAACGCTTGGCGGTCCGCATCCGCCTGCGAGAGGAGCGCG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS GCA 90 bp | TCGGGATACTGGTTCTGTACGAAGAGTGCCTCGAGCGCCTGCAGCTaGTCCTCGCTGAAGATGGTACGGTGGCGCCGCGTGCGCCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: SGYWFCTKSASSACS*SSLKMVRWRRVRLC Trigger: GCAGAGGCGCACGCGGCGCCACCGTACCATCTTCAGCGAGGAGCAGCTGCAGGCGCTCGAGGCACTCTTCGTACAGAACCAGTATCCCGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS GCA 90 bp | CCTACGTCGGGATACTGGTTCTGTACGAAGAGTGCCTCGAGCGCCTaGAGCTGCTCCTCGCTGAAGATGGTACGGTGGCGCCGCGTGCGC | + |
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Preference number: 5 (lower is better) Translates to: PTSGYWFCTKSASSA*SCSSLKMVRWRRVR Trigger: GCGCACGCGGCGCCACCGTACCATCTTCAGCGAGGAGCAGCTGCAGGCGCTCGAGGCACTCTTCGTACAGAACCAGTATCCCGACGTAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS CCA 90 bp | CGGATGCGGACCGCCAAGCGTTCGCGTGTGCCTACGTCGGGATACTaGTTCTGTACGAAGAGTGCCTCGAGCGCCTGCAGCTGCTCCTCG | + |
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Preference number: 5 (lower is better) Translates to: RMRTAKRSRVPTSGY*FCTKSASSACSCSS Trigger: CGAGGAGCAGCTGCAGGCGCTCGAGGCACTCTTCGTACAGAACCAGTATCCCGACGTAGGCACACGCGAACGCTTGGCGGTCCGCATCCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS GCA 72 bp | GACCACCGACGGGCTGCGGTGGCCGCGTCGCGGGCCTaGGCTCCGGCAGGCTGGAGAGGATGTGCTCGATGG | + |
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Preference number: 6 (lower is better) Translates to: DHRRAAVAASRA*APAGWRGCARW Trigger: CCATCGAGCACATCCTCTCCAGCCTGCCGGAGCGCAGGCCCGCGACGCGGCCACCGCAGCCCGTCGGTGGTC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS GCA 72 bp | GCTCGATGGAGAAAGGGCAGGGTCGCCCGGGGTCCCTaGGGCTGGCCGCGCTGCCTGCAGTCGCCATGCCCG | + |
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Preference number: 6 (lower is better) Translates to: ARWRKGRVARGP*GWPRCLQSPCP Trigger: CGGGCATGGCGACTGCAGGCAGCGCGGCCAGCCGCAGGGACCCCGGGCGACCCTGCCCTTTCTCCATCGAGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232493.2 |
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| CDS GCA 72 bp | GGTCCCTGCGGCTGGCCGCGCTGCCTGCAGTCGCCATaGCCGCGGGCGGGCGGCGCAAGAGGCGGAATATAT | + |
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Preference number: 6 (lower is better) Translates to: GPCGWPRCLQSP*PRAGGARGGIY Trigger: ATATATTCCGCCTCTTGCGCCGCCCGCCCGCGGGCATGGCGACTGCAGGCAGCGCGGCCAGCCGCAGGGACC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232493.2 |
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| CDS GCA 72 bp | GTCGCGGGCCTGCGCTCCGGCAGGCTGGAGAGGATGTaGTCGATGGAGAAAGGGCAGGGTCGCCCGGGGTCC | + |
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Preference number: 6 (lower is better) Translates to: VAGLRSGRLERM*SMEKGQGRPGS Trigger: GGACCCCGGGCGACCCTGCCCTTTCTCCATCGAGCACATCCTCTCCAGCCTGCCGGAGCGCAGGCCCGCGAC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS CCA 72 bp | GCCTGCGCTCCGGCAGGCTGGAGAGGATGTGCTCGATaGAGAAAGGGCAGGGTCGCCCGGGGTCCCTGCGGC | + |
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Preference number: 6 (lower is better) Translates to: ACAPAGWRGCAR*RKGRVARGPCG Trigger: GCCGCAGGGACCCCGGGCGACCCTGCCCTTTCTCCATCGAGCACATCCTCTCCAGCCTGCCGGAGCGCAGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS GCA 72 bp | TGGTTCTGTACGAAGAGTGCCTCGAGCGCCTGCAGCTaGTCCTCGCTGAAGATGGTACGGTGGCGCCGCGTG | + |
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Preference number: 6 (lower is better) Translates to: WFCTKSASSACS*SSLKMVRWRRV Trigger: CACGCGGCGCCACCGTACCATCTTCAGCGAGGAGCAGCTGCAGGCGCTCGAGGCACTCTTCGTACAGAACCA 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS GCA 72 bp | CTCGCAGGCGGATGCGGACCGCCAAGCGTTCGCGTGTaGCTACGTCGGGATACTGGTTCTGTACGAAGAGTG | + |
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Preference number: 6 (lower is better) Translates to: LAGGCGPPSVRV*LRRDTGSVRRV Trigger: CACTCTTCGTACAGAACCAGTATCCCGACGTAGGCACACGCGAACGCTTGGCGGTCCGCATCCGCCTGCGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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| CDS TCA 72 bp | CTTGGGAGTTTTCTTAGTCCCAGGCAGGAGCCTCGATaGGGAAGCACGCTTTTGGTGTCGCCACTTTGCCCG | + |
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Preference number: 6 (lower is better) Translates to: LGSFLSPRQEPR*GSTLLVSPLCP Trigger: CGGGCAAAGTGGCGACACCAAAAGCGTGCTTCCTCATCGAGGCTCCTGCCTGGGACTAAGAAAACTCCCAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000012279.6 ENSMUST00000232493.2 |
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