Pregenerated sensors for GSC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021095Ensembl transcript IDs: ENSMUST00000021513.6
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCCCTCCCGCAAGGCAGGGTGTGTGCAAGTAGCATCGACTGTCTGTaGAAGTCCTTGCGTCAGGCAAGCGCCCCGGCCGGCCCGCGGCCG | + |
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Preference number: 1 (lower is better) Translates to: PLPQGRVCASSIDCL*KSLRQASAPAGPRP Trigger: CGGCCGCGGGCCGGCCGGGGCGCTTGCCTGACGCAAGGACTTGCACAGACAGTCGATGCTACTTGCACACACCCTGCCTTGCGGGAGGGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| 3UTR GCA 90 bp | CCCAGCAGTCCTGGGCCTGTACATTATTTACAGCTAGCTCCTCGTTaGTTTCTCGACCCCCTCCCGCAAGGCAGGGTGTGTGCAAGTAGC | + |
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Preference number: 1 (lower is better) Translates to: PSSPGPVHYLQLAPR*FLDPLPQGRVCASS Trigger: GCTACTTGCACACACCCTGCCTTGCGGGAGGGGGTCGAGAAAGCAACGAGGAGCTAGCTGTAAATAATGTACAGGCCCAGGACTGCTGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| 3UTR-3UTR GCA 90 bp | GCCTGTCCCCAGCAGTCCTGGGCCTGTACATTATTTACAGCTAGCTCCTCGTTGGTCTGTGCAAGTCCTTaGGTCAGGCAAGCGCCCCGG | + |
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Preference number: 2 (lower is better) Translates to: ACPQQSWACTLFTASSSLVCASP*VRQAPR Trigger: CCGGGGCGCTTGCCTGACGCAAGGACTTGCACAGAC...CAACGAGGAGCTAGCTGTAAATAATGTACAGGCCCAGGACTGCTGGGGACAGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| 3UTR-3UTR GCA 90 bp | GCCTGTCCCCAGCAGTCCTGGGCCTGTACATTATTTACAGCTAGCTCCTCGTTGAGCATCGACTGTCTGTaGAAGTCCTTGCGTCAGGCA | + |
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Preference number: 2 (lower is better) Translates to: ACPQQSWACTLFTASSSLSIDCL*KSLRQA Trigger: TGCCTGACGCAAGGACTTGCACAGACAGTCGATGCT...CAACGAGGAGCTAGCTGTAAATAATGTACAGGCCCAGGACTGCTGGGGACAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| 3UTR GCA 72 bp | CAAGGCAGGGTGTGTGCAAGTAGCATCGACTGTCTGTaGAAGTCCTTGCGTCAGGCAAGCGCCCCGGCCGGC | + |
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Preference number: 3 (lower is better) Translates to: QGRVCASSIDCL*KSLRQASAPAG Trigger: GCCGGCCGGGGCGCTTGCCTGACGCAAGGACTTGCACAGACAGTCGATGCTACTTGCACACACCCTGCCTTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| 3UTR CCA 72 bp | GGGCTGCGGTCCCCACGCGCCTGTCCCCAGCAGTCCTaGGCCTGTACATTATTTACAGCTAGCTCCTCGTTG | + |
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Preference number: 3 (lower is better) Translates to: GLRSPRACPQQS*ACTLFTASSSL Trigger: CAACGAGGAGCTAGCTGTAAATAATGTACAGGCCCAGGACTGCTGGGGACAGGCGCGTGGGGACCGCAGCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| 3UTR GCA 72 bp | CCTGGGCCTGTACATTATTTACAGCTAGCTCCTCGTTaGTTTCTCGACCCCCTCCCGCAAGGCAGGGTGTGT | + |
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Preference number: 3 (lower is better) Translates to: PGPVHYLQLAPR*FLDPLPQGRVC Trigger: ACACACCCTGCCTTGCGGGAGGGGGTCGAGAAAGCAACGAGGAGCTAGCTGTAAATAATGTACAGGCCCAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS-3UTR CCA 90 bp | TCTGTGCAAGTCCTTGCGTCAGGCAAGCGCCCCGGCCGGCCCGCGGCCGCGGCCACGCAGGAGCACTGCTaGGCGCCCAGCGGCGGCACA | + |
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Preference number: 4 (lower is better) Translates to: SVQVLASGKRPGRPAAAATQEHC*APSGGT Trigger: TGTGCCGCCGCTGGGCGCCCAGCAGTGCTCCTGCGT...GGCCGCGGCCGCGGGCCGGCCGGGGCGCTTGCCTGACGCAAGGACTTGCACAGA 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS-3UTR GCA 90 bp | AATACTACGGTGGGGGACGAGGCTCACGCAGGCAGCCCGGGACAGTGGGGCTGCCGTAGTCCGAGGAGGTaGCGCCGCCGGCGCCGTAGA | + |
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Preference number: 4 (lower is better) Translates to: NTTVGDEAHAGSPGQWGCRSPRR*RRRRRR Trigger: TCTACGGCGCCGGCGGCGGCACCTCCTCGGACTACG...GCAGCCCCACTGTCCCGGGCTGCCTGCGTGAGCCTCGTCCCCCACCGTAGTATT 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS-3UTR GCA 90 bp | ATAAATACTACGGTGGGGGACGAGGCTCACGCAGGCAGCCCGGGACAGTGGGGCGGAGCACCGCGTCTTTaGAGCGCGGCCGGGCGGCCA | + |
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Preference number: 4 (lower is better) Translates to: INTTVGDEAHAGSPGQWGGAPRL*SAAGRP Trigger: TGGCCGCCCGGCCGCGCTGCAAAGACGCGGTGCTCC...GCCCCACTGTCCCGGGCTGCCTGCGTGAGCCTCGTCCCCCACCGTAGTATTTAT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS-3UTR GCA 90 bp | TACGGTGGGGGACGAGGCTCACGCAGGCAGCCCGGGACAGTGGGGCTGCGGTCCAGCTGGTTGAGCAGCTaGAGCTCAGTGCGCGACAGC | + |
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Preference number: 4 (lower is better) Translates to: YGGGRGSRRQPGTVGLRSSWLSS*SSVRDS Trigger: GCTGTCGCGCACTGAGCTGCAGCTGCTCAACCAGCT...GGACCGCAGCCCCACTGTCCCGGGCTGCCTGCGTGAGCCTCGTCCCCCACCGTA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS-3UTR GCA 90 bp | AATACTACGGTGGGGGACGAGGCTCACGCAGGCAGCCCGGGACAGTGGGGCTGCGCAGCTGCAGCTCAGTaGGCGACAGCGTGCCCACGT | + |
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Preference number: 4 (lower is better) Translates to: NTTVGDEAHAGSPGQWGCAAAAQ*ATACPR Trigger: ACGTGGGCACGCTGTCGCGCACTGAGCTGCAGCTGC...GCAGCCCCACTGTCCCGGGCTGCCTGCGTGAGCCTCGTCCCCCACCGTAGTATT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS-3UTR GCA 90 bp | AATACTACGGTGGGGGACGAGGCTCACGCAGGCAGCCCGGGACAGTGGGGCTGCCGCTTCCGCCGACAGTaGAGCTGGTTGAGCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: NTTVGDEAHAGSPGQWGCRFRRQ*SWLSSC Trigger: GCAGCTGCTCAACCAGCTGCACTGTCGGCGGAAGCG...GCAGCCCCACTGTCCCGGGCTGCCTGCGTGAGCCTCGTCCCCCACCGTAGTATT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS-3UTR GCA 90 bp | AATACTACGGTGGGGGACGAGGCTCACGCAGGCAGCCCGGGACAGTGGGGCTGCCAGTGCGCGACAGCGTaGCCACGTTCATGTAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: NTTVGDEAHAGSPGQWGCQCATA*PRSCRA Trigger: TGCCCTACATGAACGTGGGCACGCTGTCGCGCACTG...GCAGCCCCACTGTCCCGGGCTGCCTGCGTGAGCCTCGTCCCCCACCGTAGTATT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS-3UTR TCA 90 bp | GTAGCATCGACTGTCTGTGCAAGTCCTTGCGTCAGGCAAGCGCCCCGGCCGGCCGACAGTGCAGCTGGTTaGGCAGCTGCAGCTCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: VASTVCASPCVRQAPRPADSAAG*AAAAQC Trigger: GCACTGAGCTGCAGCTGCTCAACCAGCTGCACTGTC...GGCCGGCCGGGGCGCTTGCCTGACGCAAGGACTTGCACAGACAGTCGATGCTAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS-3UTR GCA 90 bp | TGCTTTCTCGACCCCCTCCCGCAAGGCAGGGTGTGTGCAAGTAGCATCGACTGTACCTTCCTGGCCAGCTaGTCCCGAGTGCCCACGTCT | + |
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Preference number: 4 (lower is better) Translates to: CFLDPLPQGRVCASSIDCTFLAS*SRVPTS Trigger: AGACGTGGGCACTCGGGAGCAGCTGGCCAGGAAGGT...ACAGTCGATGCTACTTGCACACACCCTGCCTTGCGGGAGGGGGTCGAGAAAGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS-3UTR CCA 90 bp | TCGACCCCCTCCCGCAAGGCAGGGTGTGTGCAAGTAGCATCGACTGTCTGTGCACCGAGTGCCCACGTCTaGGTACTTCGTCTCCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: STPSRKAGCVQVASTVCAPSAHV*VLRLLE Trigger: TTCCAGGAGACGAAGTACCCAGACGTGGGCACTCGG...TGCACAGACAGTCGATGCTACTTGCACACACCCTGCCTTGCGGGAGGGGGTCGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS-3UTR CCA 90 bp | GCCTGTCCCCAGCAGTCCTGGGCCTGTACATTATTTACAGCTAGCTCCTCGTTGGAAGGTGCACCTTCCTaGCCAGCTGCTCCCGAGTGC | + |
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Preference number: 4 (lower is better) Translates to: ACPQQSWACTLFTASSSLEGAPS*PAAPEC Trigger: GCACTCGGGAGCAGCTGGCCAGGAAGGTGCACCTTC...CAACGAGGAGCTAGCTGTAAATAATGTACAGGCCCAGGACTGCTGGGGACAGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS-3UTR GCA 90 bp | TTCTCGACCCCCTCCCGCAAGGCAGGGTGTGTGCAAGTAGCATCGACTGTCTGTTCCAGGGCTTCGAGCTaGTCATCGGTGAAGATGGTG | + |
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Preference number: 4 (lower is better) Translates to: FSTPSRKAGCVQVASTVCSRASS*SSVKMV Trigger: CACCATCTTCACCGATGAGCAGCTCGAAGCCCTGGA...ACAGACAGTCGATGCTACTTGCACACACCCTGCCTTGCGGGAGGGGGTCGAGAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| 3UTR CAA 72 bp | TCCTGGGCCTGTACATTATTTACAGCTAGCTCCTCGTaGCTTTCTCGACCCCCTCCCGCAAGGCAGGGTGTG | + |
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Preference number: 4 (lower is better) Translates to: SWACTLFTASSS*LSRPPPARQGV Trigger: CACACCCTGCCTTGCGGGAGGGGGTCGAGAAAGCAACGAGGAGCTAGCTGTAAATAATGTACAGGCCCAGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS-3UTR CCA 90 bp | TCACTTTATTGTATTGTCACCGTTAACTTAACTATAAATACTACGGTGGGGGACGGGGCCCTCGTAGCCTaGGGGCGTCGGGACGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: SLYCIVTVNLTINTTVGDGALVA*GRRDAG Trigger: TCCTGCGTCCCGACGCCCCCAGGCTACGAGGGCCCC...GTCCCCCACCGTAGTATTTATAGTTAAGTTAACGGTGACAATACAATAAAGTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS CCA 90 bp | GCGAGTCCCCGTGTAGAGCCGGGAAGACCACCGGAGCCGCGGCGCTaGGCGCCACCGGGAGCACCGCGTCTTTGCAGCGCGGCCGGGCGG | + |
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Preference number: 5 (lower is better) Translates to: ASPRVEPGRPPEPRR*APPGAPRLCSAAGR Trigger: CCGCCCGGCCGCGCTGCAAAGACGCGGTGCTCCCGGTGGCGCCCAGCGCCGCGGCTCCGGTGGTCTTCCCGGCTCTACACGGGGACTCGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS GCA 90 bp | CGGGGGCCACAGGGCGCGGGTAGAAGGCGCCGTAGTCCGAGGAGGTaGCGCCGCCGGCGCCGTAGAGCGAGTCCCCGTGTAGAGCCGGGA | + |
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Preference number: 5 (lower is better) Translates to: RGPQGAGRRRRSPRR*RRRRRRASPRVEPG Trigger: TCCCGGCTCTACACGGGGACTCGCTCTACGGCGCCGGCGGCGGCACCTCCTCGGACTACGGCGCCTTCTACCCGCGCCCTGTGGCCCCCG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS-3UTR CAA 90 bp | CTGTCTGTGCAAGTCCTTGCGTCAGGCAAGCGCCCCGGCCGGCCCGCGGCCGCGTTCTGTCGTCTCCACTaGGCTCGGCGGTTCTTAAAC | + |
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Preference number: 5 (lower is better) Translates to: LSVQVLASGKRPGRPAAAFCRLH*ARRFLN Trigger: GTTTAAGAACCGCCGAGCCAAGTGGAGACGACAGAA...CGCGGCCGCGGGCCGGCCGGGGCGCTTGCCTGACGCAAGGACTTGCACAGACAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS-3UTR CAA 90 bp | CCTGTCCCCAGCAGTCCTGGGCCTGTACATTATTTACAGCTAGCTCCTCGTTGCGCTTTTGAGGACGTCTaGTTCCACTTCTCGGCGTTT | + |
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Preference number: 5 (lower is better) Translates to: PVPSSPGPVHYLQLAPRCAFEDV*FHFSAF Trigger: AAACGCCGAGAAGTGGAACAAGACGTCCTCAAAAGC...GCAACGAGGAGCTAGCTGTAAATAATGTACAGGCCCAGGACTGCTGGGGACAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS GCA 72 bp | CCGCGGCGCTGGGCGCCACCGGGAGCACCGCGTCTTTaGAGCGCGGCCGGGCGGCCAGGATGTTGTCGATGC | + |
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Preference number: 6 (lower is better) Translates to: PRRWAPPGAPRL*SAAGRPGCCRC Trigger: GCATCGACAACATCCTGGCCGCCCGGCCGCGCTGCAAAGACGCGGTGCTCCCGGTGGCGCCCAGCGCCGCGG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS CAA 72 bp | GCCGCGGCGCTGGGCGCCACCGGGAGCACCGCGTCTTaGCAGCGCGGCCGGGCGGCCAGGATGTTGTCGATG | + |
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Preference number: 6 (lower is better) Translates to: AAALGATGSTAS*QRGRAARMLSM Trigger: CATCGACAACATCCTGGCCGCCCGGCCGCGCTGCAAAGACGCGGTGCTCCCGGTGGCGCCCAGCGCCGCGGC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS CCA 72 bp | CGTGTAGAGCCGGGAAGACCACCGGAGCCGCGGCGCTaGGCGCCACCGGGAGCACCGCGTCTTTGCAGCGCG | + |
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Preference number: 6 (lower is better) Translates to: RVEPGRPPEPRR*APPGAPRLCSA Trigger: CGCGCTGCAAAGACGCGGTGCTCCCGGTGGCGCCCAGCGCCGCGGCTCCGGTGGTCTTCCCGGCTCTACACG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS GCA 72 bp | CGCCGCTTCCGCCGACAGTGCAGCTGGTTGAGCAGCTaGAGCTCAGTGCGCGACAGCGTGCCCACGTTCATG | + |
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Preference number: 6 (lower is better) Translates to: RRFRRQCSWLSS*SSVRDSVPTFM Trigger: CATGAACGTGGGCACGCTGTCGCGCACTGAGCTGCAGCTGCTCAACCAGCTGCACTGTCGGCGGAAGCGGCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS CAA 90 bp | TTACCTTCCTCTTCCCTCTTCTCCGGCGAGGCTTTTGAGGACGTCTaGTTCCACTTCTCGGCGTTTTCTGACTCCTCCGAGGAGGATCGC | + |
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Preference number: 6 (lower is better) Translates to: LPSSSLFSGEAFEDV*FHFSAFSDSSEEDR Trigger: GCGATCCTCCTCGGAGGAGTCAGAAAACGCCGAGAAGTGGAACAAGACGTCCTCAAAAGCCTCGCCGGAGAAGAGGGAAGAGGAAGGTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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| CDS CAA 72 bp | TCTTCCCTCTTCTCCGGCGAGGCTTTTGAGGACGTCTaGTTCCACTTCTCGGCGTTTTCTGACTCCTCCGAG | + |
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Preference number: 6 (lower is better) Translates to: SSLFSGEAFEDV*FHFSAFSDSSE Trigger: CTCGGAGGAGTCAGAAAACGCCGAGAAGTGGAACAAGACGTCCTCAAAAGCCTCGCCGGAGAAGAGGGAAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021513.6 |
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