RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GRP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024517

Ensembl transcript IDs: ENSMUST00000025395.10, ENSMUST00000173985.10

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CAA 90 bp TTGCACAAAGGAAATCTTGTTGATGGTCCAGTAGAGTTGACGTTTGCAGAAGGCTTGAAGGGTTTTGTTTaGCTCCTTGGAAGCCGCCCT +
Preference number: 3 (lower is better)
Translates to: LHKGNLVDGPVELTFAEGLKGFV*LLGSRP
Trigger: AGGGCGGCTTCCAAGGAGCAAAACAAAACCCTTCAA...GCCTTCTGCAAACGTCAACTCTACTGGACCATCAACAAGATTTCCTTTGTGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10
3UTR-3UTR CAA 90 bp AAAGGAAATCTTGTTGATGGTCCAGTAGAGTTGACGTTTGCAGAAGGCAGTCTTGTTTTGTTTTGCTCCTaGGAAGCCGCCCTTGTCGTT +
Preference number: 3 (lower is better)
Translates to: KGNLVDGPVELTFAEGSLVLFCS*EAALVV
Trigger: AACGACAAGGGCGGCTTCCAAGGAGCAAAACAAAAC...AAGACTGCCTTCTGCAAACGTCAACTCTACTGGACCATCAACAAGATTTCCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10
3UTR TCA 72 bp CCCTTTGGACAGCGTGATCACGGAAGCTTTTTATTGTaGATGGTAGCAAATTGGAGCCCTGAATCTAATCAA +
Preference number: 3 (lower is better)
Translates to: PFGQRDHGSFLL*MVANWSPESNQ
Trigger: TTGATTAGATTCAGGGCTCCAATTTGCTACCATTCACAATAAAAAGCTTCCGTGATCACGCTGTCCAAAGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173985.10
CDS-3UTR CCA 90 bp CAGTCTTTGAAGGGTTTTGTTTTGCTCCTTGGAAGCCGCCCTTGTCGTTGTCCCGGCCCCCGGGGCGCCTaGCAGAGGACCAGAGCCAAC +
Preference number: 4 (lower is better)
Translates to: QSLKGFVLLLGSRPCRCPGPRGA*QRTRAN
Trigger: GTTGGCTCTGGTCCTCTGCCAGGCGCCCCGGGGGCC...GGGACAACGACAAGGGCGGCTTCCAAGGAGCAAAACAAAACCCTTCAAAGACTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10
CDS-3UTR GCA 90 bp CAGTCTTTGAAGGGTTTTGTTTTGCTCCTTGGAAGCCGCCCTTGTCGTTGTCCCGACCGTGCCTCCACCTaGGCCTGTCGACACCGGGGC +
Preference number: 4 (lower is better)
Translates to: QSLKGFVLLLGSRPCRCPDRAST*ACRHRG
Trigger: GCCCCGGTGTCGACAGGCGCAGGTGGAGGCACGGTC...GGGACAACGACAAGGGCGGCTTCCAAGGAGCAAAACAAAACCCTTCAAAGACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10
CDS-3UTR CCA 90 bp CAGTCTTTGAAGGGTTTTGTTTTGCTCCTTGGAAGCCGCCCTTGTCGTTGTCCCGGTGGCTGGTGGCTTTaGTTCCCAGCAGCTTCTAGG +
Preference number: 4 (lower is better)
Translates to: QSLKGFVLLLGSRPCRCPGGWWL*FPAASR
Trigger: CCTAGAAGCTGCTGGGAACCAAAGCCACCAGCCACC...GGGACAACGACAAGGGCGGCTTCCAAGGAGCAAAACAAAACCCTTCAAAGACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10
CDS-3UTR CCA 90 bp CAGTCTTTGAAGGGTTTTGTTTTGCTCCTTGGAAGCCGCCCTTGTCGTTGTCCCGGATCCCAAGTAGGCTaGAGACTGAGAGGCGGATGC +
Preference number: 4 (lower is better)
Translates to: QSLKGFVLLLGSRPCRCPGSQVG*RLRGGC
Trigger: GCATCCGCCTCTCAGTCTCCAGCCTACTTGGGATCC...GGGACAACGACAAGGGCGGCTTCCAAGGAGCAAAACAAAACCCTTCAAAGACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10
CDS-3UTR TCA 90 bp AAAGGAAATCTTGTTGATGGTCCAGTAGAGTTGACGTTTGCAGAAGGCAGTCTTTGTCCCACAGCCCAGTaGCTGCCGCGCGGATACATC +
Preference number: 4 (lower is better)
Translates to: KGNLVDGPVELTFAEGSLCPTAQ*LPRGYI
Trigger: GATGTATCCGCGCGGCAGTCACTGGGCTGTGGGACA...AAGACTGCCTTCTGCAAACGTCAACTCTACTGGACCATCAACAAGATTTCCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10
CDS-3UTR GCA 90 bp AAAGGAAATCTTGTTGATGGTCCAGTAGAGTTGACGTTTGCAGAAGGCAGTCTTACGTACCCCCTCAGCTaGTCCTTCAGGCCGTCTCTG +
Preference number: 4 (lower is better)
Translates to: KGNLVDGPVELTFAEGSLTYPLS*SFRPSL
Trigger: CAGAGACGGCCTGAAGGAGCAGCTGAGGGGGTACGT...AAGACTGCCTTCTGCAAACGTCAACTCTACTGGACCATCAACAAGATTTCCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10
CDS-3UTR CCA 90 bp TTGCACAAAGGAAATCTTGTTGATGGTCCAGTAGAGTTGACGTTTGCAGAAGGCGGTGGCTGGTGGCTTTaGTTCCCAGCAGCTTCTAGG +
Preference number: 4 (lower is better)
Translates to: LHKGNLVDGPVELTFAEGGGWWL*FPAASR
Trigger: CCTAGAAGCTGCTGGGAACCAAAGCCACCAGCCACC...GCCTTCTGCAAACGTCAACTCTACTGGACCATCAACAAGATTTCCTTTGTGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10
CDS-3UTR CCA 90 bp AAAGGAAATCTTGTTGATGGTCCAGTAGAGTTGACGTTTGCAGAAGGCAGTCTTAGGCGGATGCTGAGGTaGCTGGTGGCTTTGGTTCCC +
Preference number: 4 (lower is better)
Translates to: KGNLVDGPVELTFAEGSLRRMLR*LVALVP
Trigger: GGGAACCAAAGCCACCAGCCACCTCAGCATCCGCCT...AAGACTGCCTTCTGCAAACGTCAACTCTACTGGACCATCAACAAGATTTCCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10
3UTR CAA 72 bp TGGTCCAGTAGAGTTGACGTTTGCAGAAGGCAGTCTTaGAAGGGTTTTGTTTTGCTCCTTGGAAGCCGCCCT +
Preference number: 4 (lower is better)
Translates to: WSSRVDVCRRQS*KGFVLLLGSRP
Trigger: AGGGCGGCTTCCAAGGAGCAAAACAAAACCCTTCAAAGACTGCCTTCTGCAAACGTCAACTCTACTGGACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10
CDS GCA 90 bp AGCAAATCCCTTGCAGCTTCTTCCCAGCGGACGTACCCCCTCAGCTaGTCCTTCAGGCCGTCTCTGTCAGCCGCATACAGGGACGGGGAT +
Preference number: 5 (lower is better)
Translates to: SKSLAASSQRTYPLS*SFRPSLSAAYRDGD
Trigger: ATCCCCGTCCCTGTATGCGGCTGACAGAGACGGCCTGAAGGAGCAGCTGAGGGGGTACGTCCGCTGGGAAGAAGCTGCAAGGGATTTGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10
CDS-3UTR CAA 90 bp CAGTCTTTGAAGGGTTTTGTTTTGCTCCTTGGAAGCCGCCCTTGTCGTTGTCCCGGTCCAGCAAATCCCTaGCAGCTTCTTCCCAGCGGA +
Preference number: 5 (lower is better)
Translates to: QSLKGFVLLLGSRPCRCPGPANP*QLLPSG
Trigger: TCCGCTGGGAAGAAGCTGCAAGGGATTTGCTGGACC...GGGACAACGACAAGGGCGGCTTCCAAGGAGCAAAACAAAACCCTTCAAAGACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10
CDS-3UTR CAA 90 bp AAAGGAAATCTTGTTGATGGTCCAGTAGAGTTGACGTTTGCAGAAGGCAGTCTTGTTCCTCCCTTTTCCTaGAGAACCTGGAGCAGAGAG +
Preference number: 5 (lower is better)
Translates to: KGNLVDGPVELTFAEGSLVPPFS*RTWSRE
Trigger: CTCTCTGCTCCAGGTTCTCAAGGAAAAGGGAGGAAC...AAGACTGCCTTCTGCAAACGTCAACTCTACTGGACCATCAACAAGATTTCCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10
CDS GCA 72 bp GCGCGGATACATCTTAGCCAGGACCGTGCCTCCACCTaGGCCTGTCGACACCGGGGCAGCTGGCCCCCGGGG +
Preference number: 6 (lower is better)
Translates to: ARIHLSQDRAST*ACRHRGSWPPG
Trigger: CCCCGGGGGCCAGCTGCCCCGGTGTCGACAGGCGCAGGTGGAGGCACGGTCCTGGCTAAGATGTATCCGCGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10
CDS GCA 72 bp CTTGCAGCTTCTTCCCAGCGGACGTACCCCCTCAGCTaGTCCTTCAGGCCGTCTCTGTCAGCCGCATACAGG +
Preference number: 6 (lower is better)
Translates to: LAASSQRTYPLS*SFRPSLSAAYR
Trigger: CCTGTATGCGGCTGACAGAGACGGCCTGAAGGAGCAGCTGAGGGGGTACGTCCGCTGGGAAGAAGCTGCAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10
CDS CAA 90 bp GGTGGCTTTGGTTCCCAGCAGCTTCTAGGAGGTCCAGCAAATCCCTaGCAGCTTCTTCCCAGCGGACGTACCCCCTCAGCTGCTCCTTCA +
Preference number: 6 (lower is better)
Translates to: GGFGSQQLLGGPANP*QLLPSGRTPSAAPS
Trigger: TGAAGGAGCAGCTGAGGGGGTACGTCCGCTGGGAAGAAGCTGCAAGGGATTTGCTGGACCTCCTAGAAGCTGCTGGGAACCAAAGCCACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10
CDS CAA 72 bp GAGAACCTGGAGCAGAGAGTCTACCAACTTAGCGGTTaGAACGTCGTTAAAGTAGCTGCCGTCCTCGGGATC +
Preference number: 6 (lower is better)
Translates to: ENLEQRVYQLSG*NVVKVAAVLGI
Trigger: GATCCCGAGGACGGCAGCTACTTTAACGACGTTCAAACCGCTAAGTTGGTAGACTCTCTGCTCCAGGTTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10
CDS CAA 90 bp CTTTTCCTTGAGAACCTGGAGCAGAGAGTCTACCAACTTAGCGGTTaGAACGTCGTTAAAGTAGCTGCCGTCCTCGGGATCCCAAGTAGG +
Preference number: 6 (lower is better)
Translates to: LFLENLEQRVYQLSG*NVVKVAAVLGIPSR
Trigger: CCTACTTGGGATCCCGAGGACGGCAGCTACTTTAACGACGTTCAAACCGCTAAGTTGGTAGACTCTCTGCTCCAGGTTCTCAAGGAAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025395.10
ENSMUST00000173985.10