RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GRM6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000617

Ensembl transcript IDs: ENSMUST00000000631.8, ENSMUST00000171427.8

Found 236 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCAAAAGGGAAGCGACATCACAGAAGCCTGCCCCAGTTCCCTGTATaGTTCCTCTCTGTGCTGCAGGCCCAAACCCGGTTCCCAGCGCCC +
Preference number: 1 (lower is better)
Translates to: AKGKRHHRSLPQFPV*FLSVLQAQTRFPAP
Trigger: GGGCGCTGGGAACCGGGTTTGGGCCTGCAGCACAGAGAGGAACCATACAGGGAACTGGGGCAGGCTTCTGTGATGTCGCTTCCCTTTTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR TCA 90 bp TCCTGGCCTCCGATGGTCTCTGAGGATCTTTCACAGCTTCCTCTTTaGAGCCACGAACAGCAAAGGAAGGGCAGGGAGCAACCTGTGGCA +
Preference number: 1 (lower is better)
Translates to: SWPPMVSEDLSQLPL*SHEQQRKGREQPVA
Trigger: TGCCACAGGTTGCTCCCTGCCCTTCCTTTGCTGTTCGTGGCTTCAAAGAGGAAGCTGTGAAAGATCCTCAGAGACCATCGGAGGCCAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR GCA 90 bp CCAGAGCATTGGATCGCACTCGGCAGTAAATGTAGACCGGTGCTCTaGACCATGGGAAACTGGGAACACACCAAGGGAGGACTCTCTAAA +
Preference number: 1 (lower is better)
Translates to: PEHWIALGSKCRPVL*TMGNWEHTKGGLSK
Trigger: TTTAGAGAGTCCTCCCTTGGTGTGTTCCCAGTTTCCCATGGTGCAGAGCACCGGTCTACATTTACTGCCGAGTGCGATCCAATGCTCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR GCA 90 bp GTATTTCCTACTGTGGGTAAGAAGGAAGGGCTGATGAGGCCAGCCTaGCCAGGAAAGCACAAGTCCAGCGTGGATCATGGTTTAGCTCTT +
Preference number: 1 (lower is better)
Translates to: VFPTVGKKEGLMRPA*PGKHKSSVDHGLAL
Trigger: AAGAGCTAAACCATGATCCACGCTGGACTTGTGCTTTCCTGGGCAGGCTGGCCTCATCAGCCCTTCCTTCTTACCCACAGTAGGAAATAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR TCA 90 bp CATGCTGGGCATGATCTTTACACAGTCCTGGCCTCCGATGGTCTCTaGGGATCTTTCACAGCTTCCTCTTTGAAGCCACGAACAGCAAAG +
Preference number: 1 (lower is better)
Translates to: HAGHDLYTVLASDGL*GSFTASSLKPRTAK
Trigger: CTTTGCTGTTCGTGGCTTCAAAGAGGAAGCTGTGAAAGATCCTCAGAGACCATCGGAGGCCAGGACTGTGTAAAGATCATGCCCAGCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR CCA 90 bp TTCACATTCTGGCGGACACCCTGGCCAGCCCCTAGGTTACGGTGTTaGATCAAGATAAATCTTATCAAACTTGGGCAAGCCCTGACTTTA +
Preference number: 1 (lower is better)
Translates to: FTFWRTPWPAPRLRC*IKINLIKLGQALTL
Trigger: TAAAGTCAGGGCTTGCCCAAGTTTGATAAGATTTATCTTGATCCAACACCGTAACCTAGGGGCTGGCCAGGGTGTCCGCCAGAATGTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR TCA 90 bp GATGATGATGGTGAAGTGCAGCAACAAGACAATTCACGGACCCCCTaGCCAAAGCCCAGCTATACTTTATCATCTCTTACCCACACTATT +
Preference number: 1 (lower is better)
Translates to: DDDGEVQQQDNSRTP*PKPSYTLSSLTHTI
Trigger: AATAGTGTGGGTAAGAGATGATAAAGTATAGCTGGGCTTTGGTCAGGGGGTCCGTGAATTGTCTTGTTGCTGCACTTCACCATCATCATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR GCA 90 bp TCCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTaGTCCAAGAATATATGCCGGCGAGCTTTTATTCTCATTCTGATC +
Preference number: 1 (lower is better)
Translates to: SNNFLHVPHTHLSCW*SKNICRRAFILILI
Trigger: GATCAGAATGAGAATAAAAGCTCGCCGGCATATATTCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR CCA 90 bp TCTTCCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTaGTGCTCCAAGAATATATGCCGGCGAGCTTTTATTCTCATTCTG +
Preference number: 1 (lower is better)
Translates to: SSNNFLHVPHTHLSC*CSKNICRRAFILIL
Trigger: CAGAATGAGAATAAAAGCTCGCCGGCATATATTCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGGAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR TCA 90 bp GTTGGTGCTCCAAGAATATATGCCGGCGAGCTTTTATTCTCATTCTaGTCATTAAAAATTAAGCTGGGCATAGTGACACACACCTTTGAT +
Preference number: 1 (lower is better)
Translates to: VGAPRIYAGELLFSF*SLKIKLGIVTHTFD
Trigger: ATCAAAGGTGTGTGTCACTATGCCCAGCTTAATTTTTAATGATCAGAATGAGAATAAAAGCTCGCCGGCATATATTCTTGGAGCACCAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR TCA 90 bp TGCTGCAGGCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGACATCCATGCTGGGCATaGTCTTTACACAGTCCTGGC +
Preference number: 2 (lower is better)
Translates to: CCRPKPGSQRPPTGSAQGHPCWA*SLHSPG
Trigger: GCCAGGACTGTGTAAAGATCATGCCCAGCATGGATG...TCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGCCTGCAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CCA 90 bp GCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATGCAGGGAGCAACCTGTaGCACCCACACTCAACCTTG +
Preference number: 2 (lower is better)
Translates to: AQTRFPAPSYRLCSGKRYAGSNL*HPHSTL
Trigger: CAAGGTTGAGTGTGGGTGCCACAGGTTGCTCCCTGC...ATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CCA 90 bp TGCTGCAGGCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAGTCCAGCGTGGATCATaGTTTAGCTCTTTCTGGAGG +
Preference number: 2 (lower is better)
Translates to: CCRPKPGSQRPPTGSAQGVQRGS*FSSFWR
Trigger: CCTCCAGAAAGAGCTAAACCATGATCCACGCTGGAC...TCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGCCTGCAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR TCA 90 bp GAGGACTCAAACAGGACAGAAGCCTCAGTCCAGAGCATTGGATCGCACTCGGCAACTTTACCACGGGTTTaGATGCCCGCCCAGACGGTG +
Preference number: 2 (lower is better)
Translates to: EDSNRTEASVQSIGSHSATLPRV*MPAQTV
Trigger: CACCGTCTGGGCGGGCATTCAAACCCGTGGTAAAGT...TGCCGAGTGCGATCCAATGCTCTGGACTGAGGCTTCTGTCCTGTTTGAGTCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CCA 90 bp CCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATTTCCCCATCCTGGATTTCTTGTTaGGGTTTTCACATTCTGGCG +
Preference number: 2 (lower is better)
Translates to: PGSQRPPTGSAQGNDISPSWISC*GFHILA
Trigger: CGCCAGAATGTGAAAACCCCAACAAGAAATCCAGGA...TGGGGAAATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CCA 90 bp GAGGACTCAAACAGGACAGAAGCCTCAGTCCAGAGCATTGGATCGCACTCGGCACCAGGTTTCCTATTGTaGCAACTGAACCTCCTCAGC +
Preference number: 2 (lower is better)
Translates to: EDSNRTEASVQSIGSHSAPGFLL*QLNLLS
Trigger: GCTGAGGAGGTTCAGTTGCCACAATAGGAAACCTGG...TGCCGAGTGCGATCCAATGCTCTGGACTGAGGCTTCTGTCCTGTTTGAGTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR GCA 90 bp TTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGTTCATGGCCGACATCACAGAAGCCTaGCCCAGTTCCCTGTATGGT +
Preference number: 2 (lower is better)
Translates to: LIPTLGKQKPADLCEFMADITEA*PSSLYG
Trigger: ACCATACAGGGAACTGGGGCAGGCTTCTGTGATGTC...GGCCATGAACTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR GCA 90 bp CACACACCTTTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGGACATCACAGAAGCCTaGCCCAGTTCCCTGTATGGT +
Preference number: 2 (lower is better)
Translates to: HTPLIPTLGKQKPADLCEDITEA*PSSLYG
Trigger: ACCATACAGGGAACTGGGGCAGGCTTCTGTGATGTC...CTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAAAGGTGTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR GCA 90 bp GTCAAAACTCATTATAGCTTGGAGCATCTGTCCATTGAAGGGCAGCTCCCTTTCCTGATGAGGCCAGCCTaGCCAGGAAAGCACAAGTCC +
Preference number: 2 (lower is better)
Translates to: VKTHYSLEHLSIEGQLPFLMRPA*PGKHKS
Trigger: GGACTTGTGCTTTCCTGGGCAGGCTGGCCTCATCAG...GAAAGGGAGCTGCCCTTCAATGGACAGATGCTCCAAGCTATAATGAGTTTTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR TCA 90 bp CCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTGCTCCAAGAAGTGACACACACCTTTaGTCCCAACACTTGGGAAGC +
Preference number: 2 (lower is better)
Translates to: PITSSMCLTPTFHVGAPRSDTHL*SQHLGS
Trigger: GCTTCCCAAGTGTTGGGATCAAAGGTGTGTGTCACT...TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CCA 90 bp CCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTGCTCCAAGATTTGATCCCAACACTTaGGAAGCAGAAGCCAGCAGA +
Preference number: 2 (lower is better)
Translates to: PITSSMCLTPTFHVGAPRFDPNT*EAEASR
Trigger: TCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAAA...TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR CAA 90 bp GATAAATCTTATCAAACTTGGGCAAGCCCTGACTTTACCACGGGTTaGAATGCCCGCCCAGACGGTGTCAATTTAGTCTCTGTCTTCAGG +
Preference number: 2 (lower is better)
Translates to: DKSYQTWASPDFTTG*NARPDGVNLVSVFR
Trigger: CCTGAAGACAGAGACTAAATTGACACCGTCTGGGCGGGCATTCAAACCCGTGGTAAAGTCAGGGCTTGCCCAAGTTTGATAAGATTTATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR TCA 90 bp TCCATTGAAGGGCAGCTCCCTTTCAAAAATGAGTTCTGTACCTTAAATTCTGGAACTTTACCACGGGTTTaGATGCCCGCCCAGACGGTG +
Preference number: 2 (lower is better)
Translates to: SIEGQLPFKNEFCTLNSGTLPRV*MPAQTV
Trigger: CACCGTCTGGGCGGGCATTCAAACCCGTGGTAAAGT...TCCAGAATTTAAGGTACAGAACTCATTTTTGAAAGGGAGCTGCCCTTCAATGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR GCA 90 bp TATCATCTCTTACCCACACTATTGTGTTGCCATTTCTTCAGCTTGGAACAATCTCTGATGAGGCCAGCCTaGCCAGGAAAGCACAAGTCC +
Preference number: 2 (lower is better)
Translates to: YHLLPTLLCCHFFSLEQSLMRPA*PGKHKS
Trigger: GGACTTGTGCTTTCCTGGGCAGGCTGGCCTCATCAG...AGATTGTTCCAAGCTGAAGAAATGGCAACACAATAGTGTGGGTAAGAGATGATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR GCA 90 bp CACACACCTTTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGACAGCAAAGAAAAACTaGCAAACCATTTGGATGACC +
Preference number: 2 (lower is better)
Translates to: HTPLIPTLGKQKPADLCETAKKN*QTIWMT
Trigger: GGTCATCCAAATGGTTTGGCAGTTTTTCTTTGCTGT...CTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAAAGGTGTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CCA 90 bp TATCATCTCTTACCCACACTATTGTGTTGCCATTTCTTCAGCTTGGAACAATCTGCAGGGAGCAACCTGTaGCACCCACACTCAACCTTG +
Preference number: 2 (lower is better)
Translates to: YHLLPTLLCCHFFSLEQSAGSNL*HPHSTL
Trigger: CAAGGTTGAGTGTGGGTGCCACAGGTTGCTCCCTGC...AGATTGTTCCAAGCTGAAGAAATGGCAACACAATAGTGTGGGTAAGAGATGATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CCA 90 bp TCCATTGAAGGGCAGCTCCCTTTCAAAAATGAGTTCTGTACCTTAAATTCTGGACCCCAGTTCCCTGTATaGTTCCTCTCTGTGCTGCAG +
Preference number: 2 (lower is better)
Translates to: SIEGQLPFKNEFCTLNSGPQFPV*FLSVLQ
Trigger: CTGCAGCACAGAGAGGAACCATACAGGGAACTGGGG...TCCAGAATTTAAGGTACAGAACTCATTTTTGAAAGGGAGCTGCCCTTCAATGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR TCA 90 bp TCCTATAGACAAGGCTTTGCCAAGAGAACACATTTCACACTTTTGAGGACTCAACATCCATGCTGGGCATaGTCTTTACACAGTCCTGGC +
Preference number: 2 (lower is better)
Translates to: SYRQGFAKRTHFTLLRTQHPCWA*SLHSPG
Trigger: GCCAGGACTGTGTAAAGATCATGCCCAGCATGGATG...TTGAGTCCTCAAAAGTGTGAAATGTGTTCTCTTGGCAAAGCCTTGTCTATAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR GCA 90 bp CCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTGCTCCAAGATGTCTTCAGGAAGAATaGTGGAAGCAAGTATTTCCT +
Preference number: 2 (lower is better)
Translates to: PITSSMCLTPTFHVGAPRCLQEE*WKQVFP
Trigger: AGGAAATACTTGCTTCCAGCATTCTTCCTGAAGACA...TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CCA 90 bp CACACACCTTTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGCCTAGGTTACGGTGTTaGATCAAGATAAATCTTATC +
Preference number: 2 (lower is better)
Translates to: HTPLIPTLGKQKPADLCEPRLRC*IKINLI
Trigger: GATAAGATTTATCTTGATCCAACACCGTAACCTAGG...CTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAAAGGTGTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CCA 90 bp TATCATCTCTTACCCACACTATTGTGTTGCCATTTCTTCAGCTTGGAACAATCTCCCCAGTTCCCTGTATaGTTCCTCTCTGTGCTGCAG +
Preference number: 2 (lower is better)
Translates to: YHLLPTLLCCHFFSLEQSPQFPV*FLSVLQ
Trigger: CTGCAGCACAGAGAGGAACCATACAGGGAACTGGGG...AGATTGTTCCAAGCTGAAGAAATGGCAACACAATAGTGTGGGTAAGAGATGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CCA 90 bp CAAGATAAATCTTATCAAACTTGGGCAAGCCCTGACTTTACCACGGGTTTGAATGTCCAGCGTGGATCATaGTTTAGCTCTTTCTGGAGG +
Preference number: 2 (lower is better)
Translates to: QDKSYQTWASPDFTTGLNVQRGS*FSSFWR
Trigger: CCTCCAGAAAGAGCTAAACCATGATCCACGCTGGAC...ATTCAAACCCGTGGTAAAGTCAGGGCTTGCCCAAGTTTGATAAGATTTATCTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CCA 90 bp TCCTATAGACAAGGCTTTGCCAAGAGAACACATTTCACACTTTTGAGGACTCAACCAGGTTTCCTATTGTaGCAACTGAACCTCCTCAGC +
Preference number: 2 (lower is better)
Translates to: SYRQGFAKRTHFTLLRTQPGFLL*QLNLLS
Trigger: GCTGAGGAGGTTCAGTTGCCACAATAGGAAACCTGG...TTGAGTCCTCAAAAGTGTGAAATGTGTTCTCTTGGCAAAGCCTTGTCTATAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CCA 90 bp CACACACCTTTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGGCCATTTCTTCAGCTTaGAACAATCTAGAAAAACAT +
Preference number: 2 (lower is better)
Translates to: HTPLIPTLGKQKPADLCEAISSA*NNLEKH
Trigger: ATGTTTTTCTAGATTGTTCCAAGCTGAAGAAATGGC...CTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAAAGGTGTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CCA 90 bp GTCAAAACTCATTATAGCTTGGAGCATCTGTCCATTGAAGGGCAGCTCCCTTTCACCCACCTTTCATGTTaGTGCTCCAAGAATATATGC +
Preference number: 2 (lower is better)
Translates to: VKTHYSLEHLSIEGQLPFTHLSC*CSKNIC
Trigger: GCATATATTCTTGGAGCACCAACATGAAAGGTGGGT...GAAAGGGAGCTGCCCTTCAATGGACAGATGCTCCAAGCTATAATGAGTTTTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CCA 90 bp TATCATCTCTTACCCACACTATTGTGTTGCCATTTCTTCAGCTTGGAACAATCTTCCTGGATTTCTTGTTaGGGTTTTCACATTCTGGCG +
Preference number: 2 (lower is better)
Translates to: YHLLPTLLCCHFFSLEQSSWISC*GFHILA
Trigger: CGCCAGAATGTGAAAACCCCAACAAGAAATCCAGGA...AGATTGTTCCAAGCTGAAGAAATGGCAACACAATAGTGTGGGTAAGAGATGATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR GCA 90 bp TCCATTGAAGGGCAGCTCCCTTTCAAAAATGAGTTCTGTACCTTAAATTCTGGAACAGCAAAGAAAAACTaGCAAACCATTTGGATGACC +
Preference number: 2 (lower is better)
Translates to: SIEGQLPFKNEFCTLNSGTAKKN*QTIWMT
Trigger: GGTCATCCAAATGGTTTGGCAGTTTTTCTTTGCTGT...TCCAGAATTTAAGGTACAGAACTCATTTTTGAAAGGGAGCTGCCCTTCAATGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CCA 90 bp TCCTATAGACAAGGCTTTGCCAAGAGAACACATTTCACACTTTTGAGGACTCAAGCCATTTCTTCAGCTTaGAACAATCTAGAAAAACAT +
Preference number: 2 (lower is better)
Translates to: SYRQGFAKRTHFTLLRTQAISSA*NNLEKH
Trigger: ATGTTTTTCTAGATTGTTCCAAGCTGAAGAAATGGC...TTGAGTCCTCAAAAGTGTGAAATGTGTTCTCTTGGCAAAGCCTTGTCTATAGGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR CAA 90 bp ATGCTAAATAAAGTATTATATCTCAAGGTCAAAACTCATTATAGCTaGGAGCATCTGTCCATTGAAGGGCAGCTCCCTTTCAAAAATGAG +
Preference number: 2 (lower is better)
Translates to: MLNKVLYLKVKTHYS*EHLSIEGQLPFKNE
Trigger: CTCATTTTTGAAAGGGAGCTGCCCTTCAATGGACAGATGCTCCAAGCTATAATGAGTTTTGACCTTGAGATATAATACTTTATTTAGCAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR GCA 72 bp GCCTGCCCCAGTTCCCTGTATGGTTCCTCTCTGTGCTaGAGGCCCAAACCCGGTTCCCAGCGCCCTCCTACA +
Preference number: 3 (lower is better)
Translates to: ACPSSLYGSSLC*RPKPGSQRPPT
Trigger: TGTAGGAGGGCGCTGGGAACCGGGTTTGGGCCTGCAGCACAGAGAGGAACCATACAGGGAACTGGGGCAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR GCA 72 bp GAAGCCTGCCCCAGTTCCCTGTATGGTTCCTCTCTGTaGTGCAGGCCCAAACCCGGTTCCCAGCGCCCTCCT +
Preference number: 3 (lower is better)
Translates to: EACPSSLYGSSL*CRPKPGSQRPP
Trigger: AGGAGGGCGCTGGGAACCGGGTTTGGGCCTGCAGCACAGAGAGGAACCATACAGGGAACTGGGGCAGGCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CAA 90 bp TGCTGCAGGCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAATCCTGGATTTCTTGTaGGGGTTTTCACATTCTGGC +
Preference number: 3 (lower is better)
Translates to: CCRPKPGSQRPPTGSAQGILDFL*GFSHSG
Trigger: GCCAGAATGTGAAAACCCCAACAAGAAATCCAGGAT...TCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGCCTGCAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR CCA 72 bp AAGCGACATCACAGAAGCCTGCCCCAGTTCCCTGTATaGTTCCTCTCTGTGCTGCAGGCCCAAACCCGGTTC +
Preference number: 3 (lower is better)
Translates to: KRHHRSLPQFPV*FLSVLQAQTRF
Trigger: GAACCGGGTTTGGGCCTGCAGCACAGAGAGGAACCATACAGGGAACTGGGGCAGGCTTCTGTGATGTCGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR TCA 72 bp AGCTCTTTCTGGAGGCACGCCCATCCATGCTGGGCATaGTCTTTACACAGTCCTGGCCTCCGATGGTCTCTG +
Preference number: 3 (lower is better)
Translates to: SSFWRHAHPCWA*SLHSPGLRWSL
Trigger: CAGAGACCATCGGAGGCCAGGACTGTGTAAAGATCATGCCCAGCATGGATGGGCGTGCCTCCAGAAAGAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR GCA 72 bp ACTGTGGGTAAGAAGGAAGGGCTGATGAGGCCAGCCTaGCCAGGAAAGCACAAGTCCAGCGTGGATCATGGT +
Preference number: 3 (lower is better)
Translates to: TVGKKEGLMRPA*PGKHKSSVDHG
Trigger: ACCATGATCCACGCTGGACTTGTGCTTTCCTGGGCAGGCTGGCCTCATCAGCCCTTCCTTCTTACCCACAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR CCA 72 bp AGCCTGCCCAGGAAAGCACAAGTCCAGCGTGGATCATaGTTTAGCTCTTTCTGGAGGCACGCCCATCCATGC +
Preference number: 3 (lower is better)
Translates to: SLPRKAQVQRGS*FSSFWRHAHPC
Trigger: GCATGGATGGGCGTGCCTCCAGAAAGAGCTAAACCATGATCCACGCTGGACTTGTGCTTTCCTGGGCAGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR GCA 72 bp TGGATCGCACTCGGCAGTAAATGTAGACCGGTGCTCTaGACCATGGGAAACTGGGAACACACCAAGGGAGGA +
Preference number: 3 (lower is better)
Translates to: WIALGSKCRPVL*TMGNWEHTKGG
Trigger: TCCTCCCTTGGTGTGTTCCCAGTTTCCCATGGTGCAGAGCACCGGTCTACATTTACTGCCGAGTGCGATCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CAA 90 bp GCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATATCCTGGATTTCTTGTaGGGGTTTTCACATTCTGGC +
Preference number: 3 (lower is better)
Translates to: AQTRFPAPSYRLCSGKRYILDFL*GFSHSG
Trigger: GCCAGAATGTGAAAACCCCAACAAGAAATCCAGGAT...ATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR CCA 72 bp CGCCCATCCATGCTGGGCATGATCTTTACACAGTCCTaGCCTCCGATGGTCTCTGAGGATCTTTCACAGCTT +
Preference number: 3 (lower is better)
Translates to: RPSMLGMIFTQS*PPMVSEDLSQL
Trigger: AAGCTGTGAAAGATCCTCAGAGACCATCGGAGGCCAGGACTGTGTAAAGATCATGCCCAGCATGGATGGGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR CCA 72 bp GGACTCAAACAGGACAGAAGCCTCAGTCCAGAGCATTaGATCGCACTCGGCAGTAAATGTAGACCGGTGCTC +
Preference number: 3 (lower is better)
Translates to: GLKQDRSLSPEH*IALGSKCRPVL
Trigger: GAGCACCGGTCTACATTTACTGCCGAGTGCGATCCAATGCTCTGGACTGAGGCTTCTGTCCTGTTTGAGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR TCA 72 bp CCGATGGTCTCTGAGGATCTTTCACAGCTTCCTCTTTaGAGCCACGAACAGCAAAGGAAGGGCAGGGAGCAA +
Preference number: 3 (lower is better)
Translates to: PMVSEDLSQLPL*SHEQQRKGREQ
Trigger: TTGCTCCCTGCCCTTCCTTTGCTGTTCGTGGCTTCAAAGAGGAAGCTGTGAAAGATCCTCAGAGACCATCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CAA 90 bp GAGGACTCAAACAGGACAGAAGCCTCAGTCCAGAGCATTGGATCGCACTCGGCACACCCACCTTTCATGTaGGTGCTCCAAGAATATATG +
Preference number: 3 (lower is better)
Translates to: EDSNRTEASVQSIGSHSAHPPFM*VLQEYM
Trigger: CATATATTCTTGGAGCACCAACATGAAAGGTGGGTG...TGCCGAGTGCGATCCAATGCTCTGGACTGAGGCTTCTGTCCTGTTTGAGTCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR TCA 72 bp CATGATCTTTACACAGTCCTGGCCTCCGATGGTCTCTaGGGATCTTTCACAGCTTCCTCTTTGAAGCCACGA +
Preference number: 3 (lower is better)
Translates to: HDLYTVLASDGL*GSFTASSLKPR
Trigger: TCGTGGCTTCAAAGAGGAAGCTGTGAAAGATCCTCAGAGACCATCGGAGGCCAGGACTGTGTAAAGATCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR GCA 72 bp AAGTCCATGCACGGTCTTCCAATAACTTCCTCCATGTaGCTCACACCCACCTTTCATGTTGGTGCTCCAAGA +
Preference number: 3 (lower is better)
Translates to: KSMHGLPITSSM*LTPTFHVGAPR
Trigger: TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGGAAGACCGTGCATGGACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR GCA 72 bp TTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTaGTCCAAGAATATATGCCGGCGAGCTTTTATTCTC +
Preference number: 3 (lower is better)
Translates to: FLHVPHTHLSCW*SKNICRRAFIL
Trigger: GAGAATAAAAGCTCGCCGGCATATATTCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR CCA 72 bp AACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTaGTGCTCCAAGAATATATGCCGGCGAGCTTTTATT +
Preference number: 3 (lower is better)
Translates to: NFLHVPHTHLSC*CSKNICRRAFI
Trigger: AATAAAAGCTCGCCGGCATATATTCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CAA 90 bp TCCTATAGACAAGGCTTTGCCAAGAGAACACATTTCACACTTTTGAGGACTCAATGGAGCATCTGTCCATaGAAGGGCAGCTCCCTTTCA +
Preference number: 3 (lower is better)
Translates to: SYRQGFAKRTHFTLLRTQWSICP*KGSSLS
Trigger: TGAAAGGGAGCTGCCCTTCAATGGACAGATGCTCCA...TTGAGTCCTCAAAAGTGTGAAATGTGTTCTCTTGGCAAAGCCTTGTCTATAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CAA 90 bp TCCATTGAAGGGCAGCTCCCTTTCAAAAATGAGTTCTGTACCTTAAATTCTGGAACCCACACTATTGTGTaGCCATTTCTTCAGCTTGGA +
Preference number: 3 (lower is better)
Translates to: SIEGQLPFKNEFCTLNSGTHTIV*PFLQLG
Trigger: TCCAAGCTGAAGAAATGGCAACACAATAGTGTGGGT...TCCAGAATTTAAGGTACAGAACTCATTTTTGAAAGGGAGCTGCCCTTCAATGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR-3UTR CAA 90 bp TCCTATAGACAAGGCTTTGCCAAGAGAACACATTTCACACTTTTGAGGACTCAATGCCATTTCTTCAGCTaGGAACAATCTAGAAAAACA +
Preference number: 3 (lower is better)
Translates to: SYRQGFAKRTHFTLLRTQCHFFS*EQSRKT
Trigger: TGTTTTTCTAGATTGTTCCAAGCTGAAGAAATGGCA...TTGAGTCCTCAAAAGTGTGAAATGTGTTCTCTTGGCAAAGCCTTGTCTATAGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp TGCTGCAGGCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGACCTCGGATGAGCGCCTaGACGAAGCTCAGCGCCTGC +
Preference number: 4 (lower is better)
Translates to: CCRPKPGSQRPPTGSAQGPRMSA*TKLSAC
Trigger: GCAGGCGCTGAGCTTCGTGCAGGCGCTCATCCGAGG...TCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGCCTGCAGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp TGCTGCAGGCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAGGGCACAGACCTGTGTaGCCTGGGCAGAGTGCTTGG +
Preference number: 4 (lower is better)
Translates to: CCRPKPGSQRPPTGSAQGGHRPV*PGQSAW
Trigger: CCAAGCACTCTGCCCAGGCCACACAGGTCTGTGCCC...TCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGCCTGCAGCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp CCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATTTCCCCAGCTCCGGGTCGGCGTTaGTGCGGTCCAGCGCGTAGA +
Preference number: 4 (lower is better)
Translates to: PGSQRPPTGSAQGNDISPAPGRR*CGPARR
Trigger: TCTACGCGCTGGACCGCATCAACGCCGACCCGGAGC...TGGGGAAATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp TGCTGCAGGCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAGGTGTCGGTCTCATGTaGCCTGGACAGGCCTCACAC +
Preference number: 4 (lower is better)
Translates to: CCRPKPGSQRPPTGSAQGGVGLM*PGQASH
Trigger: GTGTGAGGCCTGTCCAGGGCACATGAGACCGACACC...TCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGCCTGCAGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp TGCTGCAGGCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAGTCAATCACGCTGTGTaGAGGTTGGGCCCCCAACCA +
Preference number: 4 (lower is better)
Translates to: CCRPKPGSQRPPTGSAQGVNHAV*RLGPQP
Trigger: TGGTTGGGGGCCCAACCTCCACACAGCGTGATTGAC...TCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGCCTGCAGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp GAGGCACGCCCATCCATGCTGGGCATGATCTTTACACAGTCCTGGCCTCCGATGCCTCGGATGAGCGCCTaGACGAAGCTCAGCGCCTGC +
Preference number: 4 (lower is better)
Translates to: EARPSMLGMIFTQSWPPMPRMSA*TKLSAC
Trigger: GCAGGCGCTGAGCTTCGTGCAGGCGCTCATCCGAGG...CATCGGAGGCCAGGACTGTGTAAAGATCATGCCCAGCATGGATGGGCGTGCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp TGCTGCAGGCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGACATCACTGGGGTTCCTaGGCTACCATTGAAGCGGAC +
Preference number: 4 (lower is better)
Translates to: CCRPKPGSQRPPTGSAQGHHWGS*ATIEAD
Trigger: GTCCGCTTCAATGGTAGCGCAGGAACCCCAGTGATG...TCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGCCTGCAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp CCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATTTCCCCAAGCACACCCCTGGCTTaGTCAGGGTCCACCGTCCTC +
Preference number: 4 (lower is better)
Translates to: PGSQRPPTGSAQGNDISPSTPLA*SGSTVL
Trigger: GAGGACGGTGGACCCTGAGCAAGCCAGGGGTGTGCT...TGGGGAAATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATGGGCACAGACCTGTGTaGCCTGGGCAGAGTGCTTGG +
Preference number: 4 (lower is better)
Translates to: AQTRFPAPSYRLCSGKRYGHRPV*PGQSAW
Trigger: CCAAGCACTCTGCCCAGGCCACACAGGTCTGTGCCC...ATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp CCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATTTCCCCACATTGGCCCACAGCCTaGTACCCGCCACTGCTGGCA +
Preference number: 4 (lower is better)
Translates to: PGSQRPPTGSAQGNDISPHWPTA*YPPLLA
Trigger: TGCCAGCAGTGGCGGGTACCAGGCTGTGGGCCAATG...TGGGGAAATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp GAGGCACGCCCATCCATGCTGGGCATGATCTTTACACAGTCCTGGCCTCCGATGGCAGGGCAGAGTAGCTaGGCGTGGTACCCAAGCCGA +
Preference number: 4 (lower is better)
Translates to: EARPSMLGMIFTQSWPPMAGQSS*AWYPSR
Trigger: TCGGCTTGGGTACCACGCTCAGCTACTCTGCCCTGC...CATCGGAGGCCAGGACTGTGTAAAGATCATGCCCAGCATGGATGGGCGTGCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp GCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATCAGTCTAAGGGCCTCTaGCCATTGGCCCACAGCCTG +
Preference number: 4 (lower is better)
Translates to: AQTRFPAPSYRLCSGKRYQSKGL*PLAHSL
Trigger: CAGGCTGTGGGCCAATGGGCAGAGGCCCTTAGACTG...ATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp GAGGCACGCCCATCCATGCTGGGCATGATCTTTACACAGTCCTGGCCTCCGATGTCGCAGGCCTCACAGTaGCAACAGCAGGGCACACCC +
Preference number: 4 (lower is better)
Translates to: EARPSMLGMIFTQSWPPMSQASQ*QQQGTP
Trigger: GGGTGTGCCCTGCTGTTGGCACTGTGAGGCCTGCGA...CATCGGAGGCCAGGACTGTGTAAAGATCATGCCCAGCATGGATGGGCGTGCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp CCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATTTCCCCAAGTAGGCTCCATGGCTaGGCACAGACCTGTGTGGCC +
Preference number: 4 (lower is better)
Translates to: PGSQRPPTGSAQGNDISPSRLHG*AQTCVA
Trigger: GGCCACACAGGTCTGTGCCCAGCCATGGAGCCTACT...TGGGGAAATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATGTGAACTCGTCCACCTaGAAGCGGTACCCGTCGCAG +
Preference number: 4 (lower is better)
Translates to: AQTRFPAPSYRLCSGKRYVNSST*KRYPSQ
Trigger: CTGCGACGGGTACCGCTTCCAGGTGGACGAGTTCAC...ATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp CCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATTTCCCCAACGCTGTGTGGAGGTTaGGCCCCCAACCACGCTATC +
Preference number: 4 (lower is better)
Translates to: PGSQRPPTGSAQGNDISPTLCGG*APNHAI
Trigger: GATAGCGTGGTTGGGGGCCCAACCTCCACACAGCGT...TGGGGAAATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp CCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATTTCCCCACCAACCCACAGGAAGTaGCCAGTCAGGTTTGCCTGG +
Preference number: 4 (lower is better)
Translates to: PGSQRPPTGSAQGNDISPPTHRK*PVRFAW
Trigger: CCAGGCAAACCTGACTGGCCACTTCCTGTGGGTTGG...TGGGGAAATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp CCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATTTCCCCACCTGGGCAGAGTGCTTaGTGCATGCTGTGCAGAGCA +
Preference number: 4 (lower is better)
Translates to: PGSQRPPTGSAQGNDISPPGQSA*CMLCRA
Trigger: TGCTCTGCACAGCATGCACCAAGCACTCTGCCCAGG...TGGGGAAATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp TTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGTTCATGGCCGCTCCGGGTCGGCGTTaGTGCGGTCCAGCGCGTAGA +
Preference number: 4 (lower is better)
Translates to: LIPTLGKQKPADLCEFMAAPGRR*CGPARR
Trigger: TCTACGCGCTGGACCGCATCAACGCCGACCCGGAGC...GGCCATGAACTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp CCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATTTCCCCATTTTGGGCAAGATGGTaGTGGCCCCCACAGCCTCTT +
Preference number: 4 (lower is better)
Translates to: PGSQRPPTGSAQGNDISPFWARW*WPPQPL
Trigger: AAGAGGCTGTGGGGGCCATCACCATCTTGCCCAAAA...TGGGGAAATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp GAGGCACGCCCATCCATGCTGGGCATGATCTTTACACAGTCCTGGCCTCCGATGTGGAGTCCTGGCCGATaGGTTCCTCGCCTGTGCATT +
Preference number: 4 (lower is better)
Translates to: EARPSMLGMIFTQSWPPMWSPGR*VPRLCI
Trigger: AATGCACAGGCGAGGAACGCATCGGCCAGGACTCCA...CATCGGAGGCCAGGACTGTGTAAAGATCATGCCCAGCATGGATGGGCGTGCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATCCTCCTGTTCATAGGTaGAGTCCTGGCCGATGCGTT +
Preference number: 4 (lower is better)
Translates to: AQTRFPAPSYRLCSGKRYPPVHR*SPGRCV
Trigger: AACGCATCGGCCAGGACTCCACCTATGAACAGGAGG...ATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GAGGCACGCCCATCCATGCTGGGCATGATCTTTACACAGTCCTGGCCTCCGATGCAGACCTGTGTGGCCTaGGCAGAGTGCTTGGTGCAT +
Preference number: 4 (lower is better)
Translates to: EARPSMLGMIFTQSWPPMQTCVA*AECLVH
Trigger: ATGCACCAAGCACTCTGCCCAGGCCACACAGGTCTG...CATCGGAGGCCAGGACTGTGTAAAGATCATGCCCAGCATGGATGGGCGTGCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp CCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTGCTCCAAGACTCCGCGGCCTCGGATaGGCGCCTGCACGAAGCTCA +
Preference number: 4 (lower is better)
Translates to: PITSSMCLTPTFHVGAPRLRGLG*APARSS
Trigger: TGAGCTTCGTGCAGGCGCTCATCCGAGGCCGCGGAG...TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp GCCCGCCCAGACGGTGTCAATTTAGTCTCTGTCTTCAGGAAGAATGCTGGAAGCAGCGTGTGGAGTCACTaGGCTCTGGGGCTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: ARPDGVNLVSVFRKNAGSSVWSH*ALGLWR
Trigger: CCTCCACAGCCCCAGAGCTCAGTGACTCCACACGCT...GCTTCCAGCATTCTTCCTGAAGACAGAGACTAAATTGACACCGTCTGGGCGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp GCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATGTAGATCTTCTCAGCTaGCTGGGCGGTGCCAAAGAA +
Preference number: 4 (lower is better)
Translates to: AQTRFPAPSYRLCSGKRYVDLLS*LGGAKE
Trigger: TTCTTTGGCACCGCCCAGTCAGCTGAGAAGATCTAC...ATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp GAGGACTCAAACAGGACAGAAGCCTCAGTCCAGAGCATTGGATCGCACTCGGCAGCCTCACGGGAGATCTaGACAAAGGCCTCAACCCCG +
Preference number: 4 (lower is better)
Translates to: EDSNRTEASVQSIGSHSAASREI*TKASTP
Trigger: CGGGGTTGAGGCCTTTGTGCAGATCTCCCGTGAGGC...TGCCGAGTGCGATCCAATGCTCTGGACTGAGGCTTCTGTCCTGTTTGAGTCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp CCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATTTCCCCAAGATGGGAGAGATCTTaGATCCCCAGCTGTCTGAGC +
Preference number: 4 (lower is better)
Translates to: PGSQRPPTGSAQGNDISPRWERS*IPSCLS
Trigger: GCTCAGACAGCTGGGGATCCAAGATCTCTCCCATCT...TGGGGAAATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GAGGACTCAAACAGGACAGAAGCCTCAGTCCAGAGCATTGGATCGCACTCGGCAAGTAGGCTCCATGGCTaGGCACAGACCTGTGTGGCC +
Preference number: 4 (lower is better)
Translates to: EDSNRTEASVQSIGSHSASRLHG*AQTCVA
Trigger: GGCCACACAGGTCTGTGCCCAGCCATGGAGCCTACT...TGCCGAGTGCGATCCAATGCTCTGGACTGAGGCTTCTGTCCTGTTTGAGTCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GCCCGCCCAGACGGTGTCAATTTAGTCTCTGTCTTCAGGAAGAATGCTGGAAGCGGGGCTGATGAAGGGTaGCGGCGTGACAGAGCGCTT +
Preference number: 4 (lower is better)
Translates to: ARPDGVNLVSVFRKNAGSGADEG*RRDRAL
Trigger: AAGCGCTCTGTCACGCCGCCACCCTTCATCAGCCCC...GCTTCCAGCATTCTTCCTGAAGACAGAGACTAAATTGACACCGTCTGGGCGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp TTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGTTCATGGCCCAGGGGAGGCTGCATTaGGAAGGGGGCACCTCATGG +
Preference number: 4 (lower is better)
Translates to: LIPTLGKQKPADLCEFMAQGRLH*EGGTSW
Trigger: CCATGAGGTGCCCCCTTCTCAATGCAGCCTCCCCTG...GGCCATGAACTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp CACACACCTTTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGGCAGGGCAGAGTAGCTaGGCGTGGTACCCAAGCCGA +
Preference number: 4 (lower is better)
Translates to: HTPLIPTLGKQKPADLCEAGQSS*AWYPSR
Trigger: TCGGCTTGGGTACCACGCTCAGCTACTCTGCCCTGC...CTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAAAGGTGTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp CACACACCTTTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGAGCCGGTGCACTCCCTaGTCCTTCTTCAGCGTCCCG +
Preference number: 4 (lower is better)
Translates to: HTPLIPTLGKQKPADLCESRCTP*SFFSVP
Trigger: CGGGACGCTGAAGAAGGAGCAGGGAGTGCACCGGCT...CTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAAAGGTGTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp CACACACCTTTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGTCGCAGGCCTCACAGTaGCAACAGCAGGGCACACCC +
Preference number: 4 (lower is better)
Translates to: HTPLIPTLGKQKPADLCESQASQ*QQQGTP
Trigger: GGGTGTGCCCTGCTGTTGGCACTGTGAGGCCTGCGA...CTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAAAGGTGTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp GCCCGCCCAGACGGTGTCAATTTAGTCTCTGTCTTCAGGAAGAATGCTGGAAGCGGTGTCGGTCTCATGTaGCCTGGACAGGCCTCACAC +
Preference number: 4 (lower is better)
Translates to: ARPDGVNLVSVFRKNAGSGVGLM*PGQASH
Trigger: GTGTGAGGCCTGTCCAGGGCACATGAGACCGACACC...GCTTCCAGCATTCTTCCTGAAGACAGAGACTAAATTGACACCGTCTGGGCGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp TTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGTTCATGGCCAGCACACCCCTGGCTTaGTCAGGGTCCACCGTCCTC +
Preference number: 4 (lower is better)
Translates to: LIPTLGKQKPADLCEFMASTPLA*SGSTVL
Trigger: GAGGACGGTGGACCCTGAGCAAGCCAGGGGTGTGCT...GGCCATGAACTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp TTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGTTCATGGCCCATTGGCCCACAGCCTaGTACCCGCCACTGCTGGCA +
Preference number: 4 (lower is better)
Translates to: LIPTLGKQKPADLCEFMAHWPTA*YPPLLA
Trigger: TGCCAGCAGTGGCGGGTACCAGGCTGTGGGCCAATG...GGCCATGAACTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GCCCGCCCAGACGGTGTCAATTTAGTCTCTGTCTTCAGGAAGAATGCTGGAAGCACGCTGTGTGGAGGTTaGGCCCCCAACCACGCTATC +
Preference number: 4 (lower is better)
Translates to: ARPDGVNLVSVFRKNAGSTLCGG*APNHAI
Trigger: GATAGCGTGGTTGGGGGCCCAACCTCCACACAGCGT...GCTTCCAGCATTCTTCCTGAAGACAGAGACTAAATTGACACCGTCTGGGCGGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GAGGACTCAAACAGGACAGAAGCCTCAGTCCAGAGCATTGGATCGCACTCGGCAGTCAATCACGCTGTGTaGAGGTTGGGCCCCCAACCA +
Preference number: 4 (lower is better)
Translates to: EDSNRTEASVQSIGSHSAVNHAV*RLGPQP
Trigger: TGGTTGGGGGCCCAACCTCCACACAGCGTGATTGAC...TGCCGAGTGCGATCCAATGCTCTGGACTGAGGCTTCTGTCCTGTTTGAGTCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp CCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTGCTCCAAGACAGGGGAGGCTGCATTaGGAAGGGGGCACCTCATGG +
Preference number: 4 (lower is better)
Translates to: PITSSMCLTPTFHVGAPRQGRLH*EGGTSW
Trigger: CCATGAGGTGCCCCCTTCTCAATGCAGCCTCCCCTG...TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp CCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTGCTCCAAGAAGCCGGTGCACTCCCTaGTCCTTCTTCAGCGTCCCG +
Preference number: 4 (lower is better)
Translates to: PITSSMCLTPTFHVGAPRSRCTP*SFFSVP
Trigger: CGGGACGCTGAAGAAGGAGCAGGGAGTGCACCGGCT...TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp GCCCGCCCAGACGGTGTCAATTTAGTCTCTGTCTTCAGGAAGAATGCTGGAAGCTGGAGTCCTGGCCGATaGGTTCCTCGCCTGTGCATT +
Preference number: 4 (lower is better)
Translates to: ARPDGVNLVSVFRKNAGSWSPGR*VPRLCI
Trigger: AATGCACAGGCGAGGAACGCATCGGCCAGGACTCCA...GCTTCCAGCATTCTTCCTGAAGACAGAGACTAAATTGACACCGTCTGGGCGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp GCCCGCCCAGACGGTGTCAATTTAGTCTCTGTCTTCAGGAAGAATGCTGGAAGCCCTGGTACCCGCCACTaGTGGCACTTCCATTGGTTG +
Preference number: 4 (lower is better)
Translates to: ARPDGVNLVSVFRKNAGSPGTRH*WHFHWL
Trigger: CAACCAATGGAAGTGCCAGCAGTGGCGGGTACCAGG...GCTTCCAGCATTCTTCCTGAAGACAGAGACTAAATTGACACCGTCTGGGCGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp GAGGCACGCCCATCCATGCTGGGCATGATCTTTACACAGTCCTGGCCTCCGATGTCCCTTGCTCGAAAATaGGGTAGATGCGGTTGGTCT +
Preference number: 4 (lower is better)
Translates to: EARPSMLGMIFTQSWPPMSLARK*GRCGWS
Trigger: AGACCAACCGCATCTACCGCATTTTCGAGCAAGGGA...CATCGGAGGCCAGGACTGTGTAAAGATCATGCCCAGCATGGATGGGCGTGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp CCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTGCTCCAAGAGACAGGCCTCACACGTaGACTCGTCCACCTGGAAGC +
Preference number: 4 (lower is better)
Translates to: PITSSMCLTPTFHVGAPRDRPHT*TRPPGS
Trigger: GCTTCCAGGTGGACGAGTTCACGTGTGAGGCCTGTC...TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp GAGGCACGCCCATCCATGCTGGGCATGATCTTTACACAGTCCTGGCCTCCGATGCAAACCAGATGTTTCTaGGGTTGTTCTCCAGGGAAC +
Preference number: 4 (lower is better)
Translates to: EARPSMLGMIFTQSWPPMQTRCF*GCSPGN
Trigger: GTTCCCTGGAGAACAACCGCAGAAACATCTGGTTTG...CATCGGAGGCCAGGACTGTGTAAAGATCATGCCCAGCATGGATGGGCGTGCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp TTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGTTCATGGCCCTGCGCTTCCGCTTCTaGACGTTCTGCTCTGGATGG +
Preference number: 4 (lower is better)
Translates to: LIPTLGKQKPADLCEFMALRFRF*TFCSGW
Trigger: CCATCCAGAGCAGAACGTGCAGAAGCGGAAGCGCAG...GGCCATGAACTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp CCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATTTCCCCACTGGCTTTGGTTCCCTaGGAATCTTTATTGATTGGG +
Preference number: 4 (lower is better)
Translates to: PGSQRPPTGSAQGNDISPLALVP*ESLLIG
Trigger: CCCAATCAATAAAGATTCCCAGGGAACCAAAGCCAG...TGGGGAAATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GAGGCACGCCCATCCATGCTGGGCATGATCTTTACACAGTCCTGGCCTCCGATGCTCCGGATCACTTTGTaGAATTCTCCTGGCTTTGGT +
Preference number: 4 (lower is better)
Translates to: EARPSMLGMIFTQSWPPMLRITL*NSPGFG
Trigger: ACCAAAGCCAGGAGAATTCCACAAAGTGATCCGGAG...CATCGGAGGCCAGGACTGTGTAAAGATCATGCCCAGCATGGATGGGCGTGCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GAGGCACGCCCATCCATGCTGGGCATGATCTTTACACAGTCCTGGCCTCCGATGGGGACACAGTCAGTGTaGTCGTTTGGATGTAGATCT +
Preference number: 4 (lower is better)
Translates to: EARPSMLGMIFTQSWPPMGTQSV*SFGCRS
Trigger: AGATCTACATCCAAACGACCACACTGACTGTGTCCC...CATCGGAGGCCAGGACTGTGTAAAGATCATGCCCAGCATGGATGGGCGTGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp TTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGTTCATGGCCTTTTGGGCAAGATGGTaGTGGCCCCCACAGCCTCTT +
Preference number: 4 (lower is better)
Translates to: LIPTLGKQKPADLCEFMAFWARW*WPPQPL
Trigger: AAGAGGCTGTGGGGGCCATCACCATCTTGCCCAAAA...GGCCATGAACTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp GCCCGCCCAGACGGTGTCAATTTAGTCTCTGTCTTCAGGAAGAATGCTGGAAGCAGAGTGCTTGGTGCATaGTGTGCAGAGCATGAGCGA +
Preference number: 4 (lower is better)
Translates to: ARPDGVNLVSVFRKNAGSRVLGA*CAEHER
Trigger: TCGCTCATGCTCTGCACAGCATGCACCAAGCACTCT...GCTTCCAGCATTCTTCCTGAAGACAGAGACTAAATTGACACCGTCTGGGCGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp CACACACCTTTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGCATCACTGGGGTTCCTaGGCTACCATTGAAGCGGAC +
Preference number: 4 (lower is better)
Translates to: HTPLIPTLGKQKPADLCEHHWGS*ATIEAD
Trigger: GTCCGCTTCAATGGTAGCGCAGGAACCCCAGTGATG...CTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAAAGGTGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp CCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTGCTCCAAGACCTGGTACCCGCCACTaGTGGCACTTCCATTGGTTG +
Preference number: 4 (lower is better)
Translates to: PITSSMCLTPTFHVGAPRPGTRH*WHFHWL
Trigger: CAACCAATGGAAGTGCCAGCAGTGGCGGGTACCAGG...TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp CCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTGCTCCAAGACTGCGCTTCCGCTTCTaGACGTTCTGCTCTGGATGG +
Preference number: 4 (lower is better)
Translates to: PITSSMCLTPTFHVGAPRLRFRF*TFCSGW
Trigger: CCATCCAGAGCAGAACGTGCAGAAGCGGAAGCGCAG...TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GAGGCACGCCCATCCATGCTGGGCATGATCTTTACACAGTCCTGGCCTCCGATGCTGGCTTTGGTTCCCTaGGAATCTTTATTGATTGGG +
Preference number: 4 (lower is better)
Translates to: EARPSMLGMIFTQSWPPMLALVP*ESLLIG
Trigger: CCCAATCAATAAAGATTCCCAGGGAACCAAAGCCAG...CATCGGAGGCCAGGACTGTGTAAAGATCATGCCCAGCATGGATGGGCGTGCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GCCCGCCCAGACGGTGTCAATTTAGTCTCTGTCTTCAGGAAGAATGCTGGAAGCAGATGGGAGAGATCTTaGATCCCCAGCTGTCTGAGC +
Preference number: 4 (lower is better)
Translates to: ARPDGVNLVSVFRKNAGSRWERS*IPSCLS
Trigger: GCTCAGACAGCTGGGGATCCAAGATCTCTCCCATCT...GCTTCCAGCATTCTTCCTGAAGACAGAGACTAAATTGACACCGTCTGGGCGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GAGGACTCAAACAGGACAGAAGCCTCAGTCCAGAGCATTGGATCGCACTCGGCAGTGGAATCATCTGACTaGCCACCTGAGCTGGTTAGT +
Preference number: 4 (lower is better)
Translates to: EDSNRTEASVQSIGSHSAVESSD*PPELVS
Trigger: ACTAACCAGCTCAGGTGGCCAGTCAGATGATTCCAC...TGCCGAGTGCGATCCAATGCTCTGGACTGAGGCTTCTGTCCTGTTTGAGTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp CCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTGCTCCAAGACAGACCTGTGTGGCCTaGGCAGAGTGCTTGGTGCAT +
Preference number: 4 (lower is better)
Translates to: PITSSMCLTPTFHVGAPRQTCVA*AECLVH
Trigger: ATGCACCAAGCACTCTGCCCAGGCCACACAGGTCTG...TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GTCAAAACTCATTATAGCTTGGAGCATCTGTCCATTGAAGGGCAGCTCCCTTTCGGGGCTGATGAAGGGTaGCGGCGTGACAGAGCGCTT +
Preference number: 4 (lower is better)
Translates to: VKTHYSLEHLSIEGQLPFGADEG*RRDRAL
Trigger: AAGCGCTCTGTCACGCCGCCACCCTTCATCAGCCCC...GAAAGGGAGCTGCCCTTCAATGGACAGATGCTCCAAGCTATAATGAGTTTTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GAGGACTCAAACAGGACAGAAGCCTCAGTCCAGAGCATTGGATCGCACTCGGCAATCTTCTCAGCTGACTaGGCGGTGCCAAAGAAGATG +
Preference number: 4 (lower is better)
Translates to: EDSNRTEASVQSIGSHSAIFSAD*AVPKKM
Trigger: CATCTTCTTTGGCACCGCCCAGTCAGCTGAGAAGAT...TGCCGAGTGCGATCCAATGCTCTGGACTGAGGCTTCTGTCCTGTTTGAGTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp TCCTATAGACAAGGCTTTGCCAAGAGAACACATTTCACACTTTTGAGGACTCAACTCCGCGGCCTCGGATaGGCGCCTGCACGAAGCTCA +
Preference number: 4 (lower is better)
Translates to: SYRQGFAKRTHFTLLRTQLRGLG*APARSS
Trigger: TGAGCTTCGTGCAGGCGCTCATCCGAGGCCGCGGAG...TTGAGTCCTCAAAAGTGTGAAATGTGTTCTCTTGGCAAAGCCTTGTCTATAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp GTCAAAACTCATTATAGCTTGGAGCATCTGTCCATTGAAGGGCAGCTCCCTTTCCAGTCTAAGGGCCTCTaGCCATTGGCCCACAGCCTG +
Preference number: 4 (lower is better)
Translates to: VKTHYSLEHLSIEGQLPFQSKGL*PLAHSL
Trigger: CAGGCTGTGGGCCAATGGGCAGAGGCCCTTAGACTG...GAAAGGGAGCTGCCCTTCAATGGACAGATGCTCCAAGCTATAATGAGTTTTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp CACACACCTTTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGCGCTTCTGCACGTTCTaGTCTGGATGGAACAGGATG +
Preference number: 4 (lower is better)
Translates to: HTPLIPTLGKQKPADLCERFCTF*SGWNRM
Trigger: CATCCTGTTCCATCCAGAGCAGAACGTGCAGAAGCG...CTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAAAGGTGTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GCCCGCCCAGACGGTGTCAATTTAGTCTCTGTCTTCAGGAAGAATGCTGGAAGCGTGGAATCATCTGACTaGCCACCTGAGCTGGTTAGT +
Preference number: 4 (lower is better)
Translates to: ARPDGVNLVSVFRKNAGSVESSD*PPELVS
Trigger: ACTAACCAGCTCAGGTGGCCAGTCAGATGATTCCAC...GCTTCCAGCATTCTTCCTGAAGACAGAGACTAAATTGACACCGTCTGGGCGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GTCAAAACTCATTATAGCTTGGAGCATCTGTCCATTGAAGGGCAGCTCCCTTTCGTGAACTCGTCCACCTaGAAGCGGTACCCGTCGCAG +
Preference number: 4 (lower is better)
Translates to: VKTHYSLEHLSIEGQLPFVNSST*KRYPSQ
Trigger: CTGCGACGGGTACCGCTTCCAGGTGGACGAGTTCAC...GAAAGGGAGCTGCCCTTCAATGGACAGATGCTCCAAGCTATAATGAGTTTTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp CCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTGCTCCAAGAGTAGATCTTCTCAGCTaGCTGGGCGGTGCCAAAGAA +
Preference number: 4 (lower is better)
Translates to: PITSSMCLTPTFHVGAPRVDLLS*LGGAKE
Trigger: TTCTTTGGCACCGCCCAGTCAGCTGAGAAGATCTAC...TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp CCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTGCTCCAAGAACCATTGAAGCGGACTaGTCGGATGTAGTGCAGCAG +
Preference number: 4 (lower is better)
Translates to: PITSSMCLTPTFHVGAPRTIEAD*SDVVQQ
Trigger: CTGCTGCACTACATCCGAGCAGTCCGCTTCAATGGT...TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp CAAGATAAATCTTATCAAACTTGGGCAAGCCCTGACTTTACCACGGGTTTGAATAGGGCCTCTGCCCATTaGCCCACAGCCTGGTACCCG +
Preference number: 4 (lower is better)
Translates to: QDKSYQTWASPDFTTGLNRASAH*PTAWYP
Trigger: CGGGTACCAGGCTGTGGGCCAATGGGCAGAGGCCCT...ATTCAAACCCGTGGTAAAGTCAGGGCTTGCCCAAGTTTGATAAGATTTATCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp TCCATTGAAGGGCAGCTCCCTTTCAAAAATGAGTTCTGTACCTTAAATTCTGGAAGGGCCTCTGCCCATTaGCCCACAGCCTGGTACCCG +
Preference number: 4 (lower is better)
Translates to: SIEGQLPFKNEFCTLNSGRASAH*PTAWYP
Trigger: CGGGTACCAGGCTGTGGGCCAATGGGCAGAGGCCCT...TCCAGAATTTAAGGTACAGAACTCATTTTTGAAAGGGAGCTGCCCTTCAATGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GCCCGCCCAGACGGTGTCAATTTAGTCTCTGTCTTCAGGAAGAATGCTGGAAGCGGGACACAGTCAGTGTaGTCGTTTGGATGTAGATCT +
Preference number: 4 (lower is better)
Translates to: ARPDGVNLVSVFRKNAGSGTQSV*SFGCRS
Trigger: AGATCTACATCCAAACGACCACACTGACTGTGTCCC...GCTTCCAGCATTCTTCCTGAAGACAGAGACTAAATTGACACCGTCTGGGCGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp GTCAAAACTCATTATAGCTTGGAGCATCTGTCCATTGAAGGGCAGCTCCCTTTCACCCCAGGCAGCCAATaGGGGACAGATCAGACATGT +
Preference number: 4 (lower is better)
Translates to: VKTHYSLEHLSIEGQLPFTPGSQ*GTDQTC
Trigger: ACATGTCTGATCTGTCCCTCATTGGCTGCCTGGGGT...GAAAGGGAGCTGCCCTTCAATGGACAGATGCTCCAAGCTATAATGAGTTTTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp TTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGTTCATGGCCGGCACTTCCATTGGTTaGTTGGTACTGGAAGATGTC +
Preference number: 4 (lower is better)
Translates to: LIPTLGKQKPADLCEFMAGTSIG*LVLEDV
Trigger: GACATCTTCCAGTACCAAGCAACCAATGGAAGTGCC...GGCCATGAACTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp TTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGTTCATGGCCTGCTGGCACTTCCATTaGTTGCTTGGTACTGGAAGA +
Preference number: 4 (lower is better)
Translates to: LIPTLGKQKPADLCEFMACWHFH*LLGTGR
Trigger: TCTTCCAGTACCAAGCAACCAATGGAAGTGCCAGCA...GGCCATGAACTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR CAA 72 bp TATCAAACTTGGGCAAGCCCTGACTTTACCACGGGTTaGAATGCCCGCCCAGACGGTGTCAATTTAGTCTCT +
Preference number: 4 (lower is better)
Translates to: YQTWASPDFTTG*NARPDGVNLVS
Trigger: AGAGACTAAATTGACACCGTCTGGGCGGGCATTCAAACCCGTGGTAAAGTCAGGGCTTGCCCAAGTTTGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp TCCATTGAAGGGCAGCTCCCTTTCAAAAATGAGTTCTGTACCTTAAATTCTGGAGACAGGCCTCACACGTaGACTCGTCCACCTGGAAGC +
Preference number: 4 (lower is better)
Translates to: SIEGQLPFKNEFCTLNSGDRPHT*TRPPGS
Trigger: GCTTCCAGGTGGACGAGTTCACGTGTGAGGCCTGTC...TCCAGAATTTAAGGTACAGAACTCATTTTTGAAAGGGAGCTGCCCTTCAATGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp CCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTGCTCCAAGACAAACCAGATGTTTCTaGGGTTGTTCTCCAGGGAAC +
Preference number: 4 (lower is better)
Translates to: PITSSMCLTPTFHVGAPRQTRCF*GCSPGN
Trigger: GTTCCCTGGAGAACAACCGCAGAAACATCTGGTTTG...TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp TTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGTTCATGGCCTTTGTGGAATTCTCCTaGCTTTGGTTCCCTGGGAAT +
Preference number: 4 (lower is better)
Translates to: LIPTLGKQKPADLCEFMAFVEFS*LWFPGN
Trigger: ATTCCCAGGGAACCAAAGCCAGGAGAATTCCACAAA...GGCCATGAACTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp CCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTGCTCCAAGACTCCGGATCACTTTGTaGAATTCTCCTGGCTTTGGT +
Preference number: 4 (lower is better)
Translates to: PITSSMCLTPTFHVGAPRLRITL*NSPGFG
Trigger: ACCAAAGCCAGGAGAATTCCACAAAGTGATCCGGAG...TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp TCCATTGAAGGGCAGCTCCCTTTCAAAAATGAGTTCTGTACCTTAAATTCTGGACCTGGGCAGAGTGCTTaGTGCATGCTGTGCAGAGCA +
Preference number: 4 (lower is better)
Translates to: SIEGQLPFKNEFCTLNSGPGQSA*CMLCRA
Trigger: TGCTCTGCACAGCATGCACCAAGCACTCTGCCCAGG...TCCAGAATTTAAGGTACAGAACTCATTTTTGAAAGGGAGCTGCCCTTCAATGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp TCCATTGAAGGGCAGCTCCCTTTCAAAAATGAGTTCTGTACCTTAAATTCTGGAACCCCAGGCAGCCAATaGGGGACAGATCAGACATGT +
Preference number: 4 (lower is better)
Translates to: SIEGQLPFKNEFCTLNSGTPGSQ*GTDQTC
Trigger: ACATGTCTGATCTGTCCCTCATTGGCTGCCTGGGGT...TCCAGAATTTAAGGTACAGAACTCATTTTTGAAAGGGAGCTGCCCTTCAATGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp TATCATCTCTTACCCACACTATTGTGTTGCCATTTCTTCAGCTTGGAACAATCTCCAACCCACAGGAAGTaGCCAGTCAGGTTTGCCTGG +
Preference number: 4 (lower is better)
Translates to: YHLLPTLLCCHFFSLEQSPTHRK*PVRFAW
Trigger: CCAGGCAAACCTGACTGGCCACTTCCTGTGGGTTGG...AGATTGTTCCAAGCTGAAGAAATGGCAACACAATAGTGTGGGTAAGAGATGATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GTCAAAACTCATTATAGCTTGGAGCATCTGTCCATTGAAGGGCAGCTCCCTTTCTGCTGGCACTTCCATTaGTTGCTTGGTACTGGAAGA +
Preference number: 4 (lower is better)
Translates to: VKTHYSLEHLSIEGQLPFCWHFH*LLGTGR
Trigger: TCTTCCAGTACCAAGCAACCAATGGAAGTGCCAGCA...GAAAGGGAGCTGCCCTTCAATGGACAGATGCTCCAAGCTATAATGAGTTTTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp TCCATTGAAGGGCAGCTCCCTTTCAAAAATGAGTTCTGTACCTTAAATTCTGGAGGTACCCGCCACTGCTaGCACTTCCATTGGTTGCTT +
Preference number: 4 (lower is better)
Translates to: SIEGQLPFKNEFCTLNSGGTRHC*HFHWLL
Trigger: AAGCAACCAATGGAAGTGCCAGCAGTGGCGGGTACC...TCCAGAATTTAAGGTACAGAACTCATTTTTGAAAGGGAGCTGCCCTTCAATGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp CAAGATAAATCTTATCAAACTTGGGCAAGCCCTGACTTTACCACGGGTTTGAATGGTACCCGCCACTGCTaGCACTTCCATTGGTTGCTT +
Preference number: 4 (lower is better)
Translates to: QDKSYQTWASPDFTTGLNGTRHC*HFHWLL
Trigger: AAGCAACCAATGGAAGTGCCAGCAGTGGCGGGTACC...ATTCAAACCCGTGGTAAAGTCAGGGCTTGCCCAAGTTTGATAAGATTTATCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp CAAGATAAATCTTATCAAACTTGGGCAAGCCCTGACTTTACCACGGGTTTGAATACCATTGAAGCGGACTaGTCGGATGTAGTGCAGCAG +
Preference number: 4 (lower is better)
Translates to: QDKSYQTWASPDFTTGLNTIEAD*SDVVQQ
Trigger: CTGCTGCACTACATCCGAGCAGTCCGCTTCAATGGT...ATTCAAACCCGTGGTAAAGTCAGGGCTTGCCCAAGTTTGATAAGATTTATCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp TCCTATAGACAAGGCTTTGCCAAGAGAACACATTTCACACTTTTGAGGACTCAACGCTTCTGCACGTTCTaGTCTGGATGGAACAGGATG +
Preference number: 4 (lower is better)
Translates to: SYRQGFAKRTHFTLLRTQRFCTF*SGWNRM
Trigger: CATCCTGTTCCATCCAGAGCAGAACGTGCAGAAGCG...TTGAGTCCTCAAAAGTGTGAAATGTGTTCTCTTGGCAAAGCCTTGTCTATAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp CAAGATAAATCTTATCAAACTTGGGCAAGCCCTGACTTTACCACGGGTTTGAATCTGGATGGAACAGGATaGCGTAGGTTTTGGGCACAT +
Preference number: 4 (lower is better)
Translates to: QDKSYQTWASPDFTTGLNLDGTG*RRFWAH
Trigger: ATGTGCCCAAAACCTACGTCATCCTGTTCCATCCAG...ATTCAAACCCGTGGTAAAGTCAGGGCTTGCCCAAGTTTGATAAGATTTATCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp TCCATTGAAGGGCAGCTCCCTTTCAAAAATGAGTTCTGTACCTTAAATTCTGGAGCATCTATCACGAACTaGACCTTCCCCTCCTGTTCA +
Preference number: 4 (lower is better)
Translates to: SIEGQLPFKNEFCTLNSGASITN*TFPSCS
Trigger: TGAACAGGAGGGGAAGGTGCAGTTCGTGATAGATGC...TCCAGAATTTAAGGTACAGAACTCATTTTTGAAAGGGAGCTGCCCTTCAATGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp TCCATTGAAGGGCAGCTCCCTTTCAAAAATGAGTTCTGTACCTTAAATTCTGGATCCCTTGCTCGAAAATaGGGTAGATGCGGTTGGTCT +
Preference number: 4 (lower is better)
Translates to: SIEGQLPFKNEFCTLNSGSLARK*GRCGWS
Trigger: AGACCAACCGCATCTACCGCATTTTCGAGCAAGGGA...TCCAGAATTTAAGGTACAGAACTCATTTTTGAAAGGGAGCTGCCCTTCAATGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp TCCATTGAAGGGCAGCTCCCTTTCAAAAATGAGTTCTGTACCTTAAATTCTGGAATCTTCTCAGCTGACTaGGCGGTGCCAAAGAAGATG +
Preference number: 4 (lower is better)
Translates to: SIEGQLPFKNEFCTLNSGIFSAD*AVPKKM
Trigger: CATCTTCTTTGGCACCGCCCAGTCAGCTGAGAAGAT...TCCAGAATTTAAGGTACAGAACTCATTTTTGAAAGGGAGCTGCCCTTCAATGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp TATCATCTCTTACCCACACTATTGTGTTGCCATTTCTTCAGCTTGGAACAATCTCTGGATGGAACAGGATaGCGTAGGTTTTGGGCACAT +
Preference number: 4 (lower is better)
Translates to: YHLLPTLLCCHFFSLEQSLDGTG*RRFWAH
Trigger: ATGTGCCCAAAACCTACGTCATCCTGTTCCATCCAG...AGATTGTTCCAAGCTGAAGAAATGGCAACACAATAGTGTGGGTAAGAGATGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp TATCATCTCTTACCCACACTATTGTGTTGCCATTTCTTCAGCTTGGAACAATCTGCATCTATCACGAACTaGACCTTCCCCTCCTGTTCA +
Preference number: 4 (lower is better)
Translates to: YHLLPTLLCCHFFSLEQSASITN*TFPSCS
Trigger: TGAACAGGAGGGGAAGGTGCAGTTCGTGATAGATGC...AGATTGTTCCAAGCTGAAGAAATGGCAACACAATAGTGTGGGTAAGAGATGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR GCA 90 bp CAAGATAAATCTTATCAAACTTGGGCAAGCCCTGACTTTACCACGGGTTTGAATGGCACTTCCATTGGTTaGTTGGTACTGGAAGATGTC +
Preference number: 4 (lower is better)
Translates to: QDKSYQTWASPDFTTGLNGTSIG*LVLEDV
Trigger: GACATCTTCCAGTACCAAGCAACCAATGGAAGTGCC...ATTCAAACCCGTGGTAAAGTCAGGGCTTGCCCAAGTTTGATAAGATTTATCTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp GTCAAAACTCATTATAGCTTGGAGCATCTGTCCATTGAAGGGCAGCTCCCTTTCGGAATCTTTATTGATTaGGCAATACAGACACCTCCA +
Preference number: 4 (lower is better)
Translates to: VKTHYSLEHLSIEGQLPFGIFID*AIQTPP
Trigger: TGGAGGTGTCTGTATTGCCCAATCAATAAAGATTCC...GAAAGGGAGCTGCCCTTCAATGGACAGATGCTCCAAGCTATAATGAGTTTTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp CAAGATAAATCTTATCAAACTTGGGCAAGCCCTGACTTTACCACGGGTTTGAATCTCATTGAACATCACTaGGGTTCCTGCGCTACCATT +
Preference number: 4 (lower is better)
Translates to: QDKSYQTWASPDFTTGLNLIEHH*GSCATI
Trigger: AATGGTAGCGCAGGAACCCCAGTGATGTTCAATGAG...ATTCAAACCCGTGGTAAAGTCAGGGCTTGCCCAAGTTTGATAAGATTTATCTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp TCCATTGAAGGGCAGCTCCCTTTCAAAAATGAGTTCTGTACCTTAAATTCTGGACCTGGGAATCTTTATTaGTTGGGCAATACAGACACC +
Preference number: 4 (lower is better)
Translates to: SIEGQLPFKNEFCTLNSGPGNLY*LGNTDT
Trigger: GGTGTCTGTATTGCCCAATCAATAAAGATTCCCAGG...TCCAGAATTTAAGGTACAGAACTCATTTTTGAAAGGGAGCTGCCCTTCAATGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR CAA 72 bp AGGTCAAAACTCATTATAGCTTGGAGCATCTGTCCATaGAAGGGCAGCTCCCTTTCAAAAATGAGTTCTGTA +
Preference number: 4 (lower is better)
Translates to: RSKLIIAWSICP*KGSSLSKMSSV
Trigger: TACAGAACTCATTTTTGAAAGGGAGCTGCCCTTCAATGGACAGATGCTCCAAGCTATAATGAGTTTTGACCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR TCA 90 bp TATCATCTCTTACCCACACTATTGTGTTGCCATTTCTTCAGCTTGGAACAATCTCCTGGGAATCTTTATTaGTTGGGCAATACAGACACC +
Preference number: 4 (lower is better)
Translates to: YHLLPTLLCCHFFSLEQSPGNLY*LGNTDT
Trigger: GGTGTCTGTATTGCCCAATCAATAAAGATTCCCAGG...AGATTGTTCCAAGCTGAAGAAATGGCAACACAATAGTGTGGGTAAGAGATGATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
3UTR CAA 72 bp AGCCCAGCTATACTTTATCATCTCTTACCCACACTATaGTGTTGCCATTTCTTCAGCTTGGAACAATCTAGA +
Preference number: 4 (lower is better)
Translates to: SPAILYHLLPTL*CCHFFSLEQSR
Trigger: TCTAGATTGTTCCAAGCTGAAGAAATGGCAACACAATAGTGTGGGTAAGAGATGATAAAGTATAGCTGGGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CCA 90 bp TATCATCTCTTACCCACACTATTGTGTTGCCATTTCTTCAGCTTGGAACAATCTGGAATCTTTATTGATTaGGCAATACAGACACCTCCA +
Preference number: 4 (lower is better)
Translates to: YHLLPTLLCCHFFSLEQSGIFID*AIQTPP
Trigger: TGGAGGTGTCTGTATTGCCCAATCAATAAAGATTCC...AGATTGTTCCAAGCTGAAGAAATGGCAACACAATAGTGTGGGTAAGAGATGATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS GCA 90 bp TCCTTCTTCAGCGTCCCGCACGCACGCCCTGCGGCGCCCCGGGCGTaGACCGGGAAGAGGCCGCCCAGCGTCAGGCCGCCTGCCAGGCGC +
Preference number: 5 (lower is better)
Translates to: SFFSVPHARPAAPRA*TGKRPPSVRPPARR
Trigger: GCGCCTGGCAGGCGGCCTGACGCTGGGCGGCCTCTTCCCGGTGCACGCCCGGGGCGCCGCAGGGCGTGCGTGCGGGACGCTGAAGAAGGA
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 90 bp GCAGAGCGGCCCACGGAGAGGACCAGGTCAGGCGCACCACGGGAGTaGGACGGCAGCCAGTGTGGTTGGGTGTCGGTCTCATGTGCCCTG +
Preference number: 5 (lower is better)
Translates to: AERPTERTRSGAPRE*DGSQCGWVSVSCAL
Trigger: CAGGGCACATGAGACCGACACCCAACCACACTGGCTGCCGTCCCACTCCCGTGGTGCGCCTGACCTGGTCCTCTCCGTGGGCCGCTCTGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 90 bp GAGGACCAGGTCAGGCGCACCACGGGAGTGGGACGGCAGCCAGTGTaGTTGGGTGTCGGTCTCATGTGCCCTGGACAGGCCTCACACGTG +
Preference number: 5 (lower is better)
Translates to: EDQVRRTTGVGRQPV*LGVGLMCPGQASHV
Trigger: CACGTGTGAGGCCTGTCCAGGGCACATGAGACCGACACCCAACCACACTGGCTGCCGTCCCACTCCCGTGGTGCGCCTGACCTGGTCCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp TGCTGCAGGCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGACACGCTGTGTGGAGGTaGGGCCCCCAACCACGCTAT +
Preference number: 5 (lower is better)
Translates to: CCRPKPGSQRPPTGSAQGHAVWR*GPQPRY
Trigger: ATAGCGTGGTTGGGGGCCCAACCTCCACACAGCGTG...TCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGCCTGCAGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 90 bp AGTGGGACGGCAGCCAGTGTGGTTGGGTGTCGGTCTCATGTGCCCTaGACAGGCCTCACACGTGAACTCGTCCACCTGGAAGCGGTACCC +
Preference number: 5 (lower is better)
Translates to: SGTAASVVGCRSHVP*TGLTRELVHLEAVP
Trigger: GGGTACCGCTTCCAGGTGGACGAGTTCACGTGTGAGGCCTGTCCAGGGCACATGAGACCGACACCCAACCACACTGGCTGCCGTCCCACT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS TCA 90 bp TGTGGTTGGGTGTCGGTCTCATGTGCCCTGGACAGGCCTCACACGTaGACTCGTCCACCTGGAAGCGGTACCCGTCGCAGGCCTCACAGT +
Preference number: 5 (lower is better)
Translates to: CGWVSVSCALDRPHT*TRPPGSGTRRRPHS
Trigger: ACTGTGAGGCCTGCGACGGGTACCGCTTCCAGGTGGACGAGTTCACGTGTGAGGCCTGTCCAGGGCACATGAGACCGACACCCAACCACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS GCA 90 bp CTGTGTGGAGGTTGGGCCCCCAACCACGCTATCACTCCCACTACCTaGAGGGAGGTAAGGCCGAAGGTGATGACTAGCTGCGAGGTGGGG +
Preference number: 5 (lower is better)
Translates to: LCGGWAPNHAITPTT*REVRPKVMTSCEVG
Trigger: CCCCACCTCGCAGCTAGTCATCACCTTCGGCCTTACCTCCCTGCAGGTAGTGGGAGTGATAGCGTGGTTGGGGGCCCAACCTCCACACAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp TGCTGCAGGCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACAGGCGCAAGACATaGGCGACCATGATGGACACG +
Preference number: 5 (lower is better)
Translates to: CCRPKPGSQRPPTGSAQGNRRKT*ATMMDT
Trigger: CGTGTCCATCATGGTCGCCAATGTCTTGCGCCTGTT...TCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGCCTGCAGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp GCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATGCCTGGGCAGAGTGCTaGGTGCATGCTGTGCAGAGC +
Preference number: 5 (lower is better)
Translates to: AQTRFPAPSYRLCSGKRYAWAEC*VHAVQS
Trigger: GCTCTGCACAGCATGCACCAAGCACTCTGCCCAGGC...ATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp GAGGCACGCCCATCCATGCTGGGCATGATCTTTACACAGTCCTGGCCTCCGATGATGATGCCCCGGGCGTaGGGTGTCTCCATGAGCCTC +
Preference number: 5 (lower is better)
Translates to: EARPSMLGMIFTQSWPPMMMPRA*GVSMSL
Trigger: GAGGCTCATGGAGACACCCAACGCCCGGGGCATCAT...CATCGGAGGCCAGGACTGTGTAAAGATCATGCCCAGCATGGATGGGCGTGCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp TGCTGCAGGCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAGCATCCCCATTCTCATaGAACATCACTGGGGTTCCT +
Preference number: 5 (lower is better)
Translates to: CCRPKPGSQRPPTGSAQGASPFS*NITGVP
Trigger: AGGAACCCCAGTGATGTTCAATGAGAATGGGGATGC...TCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGCCTGCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp GAGGACTCAAACAGGACAGAAGCCTCAGTCCAGAGCATTGGATCGCACTCGGCAGAGCACACCCCTGGCTaGCTCAGGGTCCACCGTCCT +
Preference number: 5 (lower is better)
Translates to: EDSNRTEASVQSIGSHSAEHTPG*LRVHRP
Trigger: AGGACGGTGGACCCTGAGCAAGCCAGGGGTGTGCTC...TGCCGAGTGCGATCCAATGCTCTGGACTGAGGCTTCTGTCCTGTTTGAGTCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS GCA 90 bp GTGAACTCGTCCACCTGGAAGCGGTACCCGTCGCAGGCCTCACAGTaGCAACAGCAGGGCACACCCTTCACCATCTTTTTCCGTTCACCA +
Preference number: 5 (lower is better)
Translates to: VNSSTWKRYPSQASQ*QQQGTPFTIFFRSP
Trigger: TGGTGAACGGAAAAAGATGGTGAAGGGTGTGCCCTGCTGTTGGCACTGTGAGGCCTGCGACGGGTACCGCTTCCAGGTGGACGAGTTCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS GCA 90 bp CGTGGTACCCAAGCCGAGCAAGAGTCTTCGGGAAGCACAGACGGCTaGACAAGGCTCGGCTACCATGAGGAAGGTGATGGCGTAGATCAG +
Preference number: 5 (lower is better)
Translates to: RGTQAEQESSGSTDG*TRLGYHEEGDGVDQ
Trigger: CTGATCTACGCCATCACCTTCCTCATGGTAGCCGAGCCTTGTGCAGCCGTCTGTGCTTCCCGAAGACTCTTGCTCGGCTTGGGTACCACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 90 bp GCTTCCATATCCAGTCTAAGGGCCTCTGCCCATTGGCCCACAGCCTaGTACCCGCCACTGCTGGCACTTCCATTGGTTGCTTGGTACTGG +
Preference number: 5 (lower is better)
Translates to: ASISSLRASAHWPTA*YPPLLALPLVAWYW
Trigger: CCAGTACCAAGCAACCAATGGAAGTGCCAGCAGTGGCGGGTACCAGGCTGTGGGCCAATGGGCAGAGGCCCTTAGACTGGATATGGAAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 90 bp CTCAGGGTCCACCGTCCTCTGTTCCTCATAGTCAATCACGCTGTGTaGAGGTTGGGCCCCCAACCACGCTATCACTCCCACTACCTGCAG +
Preference number: 5 (lower is better)
Translates to: LRVHRPLFLIVNHAV*RLGPQPRYHSHYLQ
Trigger: CTGCAGGTAGTGGGAGTGATAGCGTGGTTGGGGGCCCAACCTCCACACAGCGTGATTGACTATGAGGAACAGAGGACGGTGGACCCTGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 90 bp GACCACTGTAGAGCTTCCATATCCAGTCTAAGGGCCTCTGCCCATTaGCCCACAGCCTGGTACCCGCCACTGCTGGCACTTCCATTGGTT +
Preference number: 5 (lower is better)
Translates to: DHCRASISSLRASAH*PTAWYPPLLALPLV
Trigger: AACCAATGGAAGTGCCAGCAGTGGCGGGTACCAGGCTGTGGGCCAATGGGCAGAGGCCCTTAGACTGGATATGGAAGCTCTACAGTGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp GAGGCACGCCCATCCATGCTGGGCATGATCTTTACACAGTCCTGGCCTCCGATGAACAGGCGCAAGACATaGGCGACCATGATGGACACG +
Preference number: 5 (lower is better)
Translates to: EARPSMLGMIFTQSWPPMNRRKT*ATMMDT
Trigger: CGTGTCCATCATGGTCGCCAATGTCTTGCGCCTGTT...CATCGGAGGCCAGGACTGTGTAAAGATCATGCCCAGCATGGATGGGCGTGCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp GCCCGCCCAGACGGTGTCAATTTAGTCTCTGTCTTCAGGAAGAATGCTGGAAGCGCCTGGGCAGAGTGCTaGGTGCATGCTGTGCAGAGC +
Preference number: 5 (lower is better)
Translates to: ARPDGVNLVSVFRKNAGSAWAEC*VHAVQS
Trigger: GCTCTGCACAGCATGCACCAAGCACTCTGCCCAGGC...GCTTCCAGCATTCTTCCTGAAGACAGAGACTAAATTGACACCGTCTGGGCGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp CACACACCTTTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGGAGCACACCCCTGGCTaGCTCAGGGTCCACCGTCCT +
Preference number: 5 (lower is better)
Translates to: HTPLIPTLGKQKPADLCEEHTPG*LRVHRP
Trigger: AGGACGGTGGACCCTGAGCAAGCCAGGGGTGTGCTC...CTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAAAGGTGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 90 bp CAGCTGTCTGAGCCAACCCACAGGAAGTGGCCAGTCAGGTTTGCCTaGCGTGTTGCCTCCAAGACCCTCCTGATGTCATCTTCATTGGCA +
Preference number: 5 (lower is better)
Translates to: QLSEPTHRKWPVRFA*RVASKTLLMSSSLA
Trigger: TGCCAATGAAGATGACATCAGGAGGGTCTTGGAGGCAACACGCCAGGCAAACCTGACTGGCCACTTCCTGTGGGTTGGCTCAGACAGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp CCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATTTCCCCAGCATCCCCATTCTCATaGAACATCACTGGGGTTCCT +
Preference number: 5 (lower is better)
Translates to: PGSQRPPTGSAQGNDISPASPFS*NITGVP
Trigger: AGGAACCCCAGTGATGTTCAATGAGAATGGGGATGC...TGGGGAAATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp GCCCGCCCAGACGGTGTCAATTTAGTCTCTGTCTTCAGGAAGAATGCTGGAAGCGGCACACCTCGGGCCTaGATGGCATACACCGTACAC +
Preference number: 5 (lower is better)
Translates to: ARPDGVNLVSVFRKNAGSGTPRA*MAYTVH
Trigger: GTGTACGGTGTATGCCATCAAGGCCCGAGGTGTGCC...GCTTCCAGCATTCTTCCTGAAGACAGAGACTAAATTGACACCGTCTGGGCGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp CCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTGCTCCAAGACACGCTGTGTGGAGGTaGGGCCCCCAACCACGCTAT +
Preference number: 5 (lower is better)
Translates to: PITSSMCLTPTFHVGAPRHAVWR*GPQPRY
Trigger: ATAGCGTGGTTGGGGGCCCAACCTCCACACAGCGTG...TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp GCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATCCCTGGGAATCTTTATaGATTGGGCAATACAGACAC +
Preference number: 5 (lower is better)
Translates to: AQTRFPAPSYRLCSGKRYPWESL*IGQYRH
Trigger: GTGTCTGTATTGCCCAATCAATAAAGATTCCCAGGG...ATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp CCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATTTCCCCACCCTGGGAATCTTTATaGATTGGGCAATACAGACAC +
Preference number: 5 (lower is better)
Translates to: PGSQRPPTGSAQGNDISPPWESL*IGQYRH
Trigger: GTGTCTGTATTGCCCAATCAATAAAGATTCCCAGGG...TGGGGAAATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp GAGGACTCAAACAGGACAGAAGCCTCAGTCCAGAGCATTGGATCGCACTCGGCAAAGATGGGAGAGATCTaGGATCCCCAGCTGTCTGAG +
Preference number: 5 (lower is better)
Translates to: EDSNRTEASVQSIGSHSAKMGEI*DPQLSE
Trigger: CTCAGACAGCTGGGGATCCAAGATCTCTCCCATCTT...TGCCGAGTGCGATCCAATGCTCTGGACTGAGGCTTCTGTCCTGTTTGAGTCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp GCCCAAACCCGGTTCCCAGCGCCCTCCTACAGGCTCTGCTCAGGGAAACGATATCCTGAGCTGGTTAGTTaGCAGTTAAAATTCTCTTCC +
Preference number: 5 (lower is better)
Translates to: AQTRFPAPSYRLCSGKRYPELVS*QLKFSS
Trigger: GGAAGAGAATTTTAACTGCAAACTAACCAGCTCAGG...ATATCGTTTCCCTGAGCAGAGCCTGTAGGAGGGCGCTGGGAACCGGGTTTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp GCCCGCCCAGACGGTGTCAATTTAGTCTCTGTCTTCAGGAAGAATGCTGGAAGCCTGCTGGCACTTCCATaGGTTGCTTGGTACTGGAAG +
Preference number: 5 (lower is better)
Translates to: ARPDGVNLVSVFRKNAGSLLALP*VAWYWK
Trigger: CTTCCAGTACCAAGCAACCAATGGAAGTGCCAGCAG...GCTTCCAGCATTCTTCCTGAAGACAGAGACTAAATTGACACCGTCTGGGCGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 90 bp CCGATGCGTTCCTCGCCTGTGCATTTCCGGGTGGAATCATCTGACTaGCCACCTGAGCTGGTTAGTTTGCAGTTAAAATTCTCTTCCCAG +
Preference number: 5 (lower is better)
Translates to: PMRSSPVHFRVESSD*PPELVSLQLKFSSQ
Trigger: CTGGGAAGAGAATTTTAACTGCAAACTAACCAGCTCAGGTGGCCAGTCAGATGATTCCACCCGGAAATGCACAGGCGAGGAACGCATCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp CACACACCTTTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGCAGATGTTTCTGCGGTaGTTCTCCAGGGAACGAGTC +
Preference number: 5 (lower is better)
Translates to: HTPLIPTLGKQKPADLCEQMFLR*FSRERV
Trigger: GACTCGTTCCCTGGAGAACAACCGCAGAAACATCTG...CTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAAAGGTGTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp CCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTGCTCCAAGATCAGACATGTCACACTaGAGCACACCCCTGGCTTGC +
Preference number: 5 (lower is better)
Translates to: PITSSMCLTPTFHVGAPRSDMSH*STPLAC
Trigger: GCAAGCCAGGGGTGTGCTCAAGTGTGACATGTCTGA...TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS TCA 90 bp AGTATTGGTCAAATCCGTCGATTGAAGCCCTTTTGGGCAAGATGGTaGTGGCCCCCACAGCCTCTTCCTCTAGGTTCAAGATGGGAGAGA +
Preference number: 5 (lower is better)
Translates to: SIGQIRRLKPFWARW*WPPQPLPLGSRWER
Trigger: TCTCTCCCATCTTGAACCTAGAGGAAGAGGCTGTGGGGGCCATCACCATCTTGCCCAAAAGGGCTTCAATCGACGGATTTGACCAATACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp GCCCGCCCAGACGGTGTCAATTTAGTCTCTGTCTTCAGGAAGAATGCTGGAAGCGGAATTCTCCTGGCTTaGGTTCCCTGGGAATCTTTA +
Preference number: 5 (lower is better)
Translates to: ARPDGVNLVSVFRKNAGSGILLA*VPWESL
Trigger: TAAAGATTCCCAGGGAACCAAAGCCAGGAGAATTCC...GCTTCCAGCATTCTTCCTGAAGACAGAGACTAAATTGACACCGTCTGGGCGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp CCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTGCTCCAAGACTGCTGGCACTTCCATaGGTTGCTTGGTACTGGAAG +
Preference number: 5 (lower is better)
Translates to: PITSSMCLTPTFHVGAPRLLALP*VAWYWK
Trigger: CTTCCAGTACCAAGCAACCAATGGAAGTGCCAGCAG...TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS TCA 90 bp CACTTTGTGGAATTCTCCTGGCTTTGGTTCCCTGGGAATCTTTATTaGTTGGGCAATACAGACACCTCCAGCCTCACGGGAGATCTGCAC +
Preference number: 5 (lower is better)
Translates to: HFVEFSWLWFPGNLY*LGNTDTSSLTGDLH
Trigger: GTGCAGATCTCCCGTGAGGCTGGAGGTGTCTGTATTGCCCAATCAATAAAGATTCCCAGGGAACCAAAGCCAGGAGAATTCCACAAAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp CCAATAACTTCCTCCATGTGCCTCACACCCACCTTTCATGTTGGTGCTCCAAGAGGTCAAATCCGTCGATaGAAGCCCTTTTGGGCAAGA +
Preference number: 5 (lower is better)
Translates to: PITSSMCLTPTFHVGAPRGQIRR*KPFWAR
Trigger: TCTTGCCCAAAAGGGCTTCAATCGACGGATTTGACC...TCTTGGAGCACCAACATGAAAGGTGGGTGTGAGGCACATGGAGGAAGTTATTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp CACACACCTTTGATCCCAACACTTGGGAAGCAGAAGCCAGCAGATCTCTGTGAGTGGCACTTCCATTGGTaGCTTGGTACTGGAAGATGT +
Preference number: 5 (lower is better)
Translates to: HTPLIPTLGKQKPADLCEWHFHW*LGTGRC
Trigger: ACATCTTCCAGTACCAAGCAACCAATGGAAGTGCCA...CTCACAGAGATCTGCTGGCTTCTGCTTCCCAAGTGTTGGGATCAAAGGTGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp GTCAAAACTCATTATAGCTTGGAGCATCTGTCCATTGAAGGGCAGCTCCCTTTCTCAGACATGTCACACTaGAGCACACCCCTGGCTTGC +
Preference number: 5 (lower is better)
Translates to: VKTHYSLEHLSIEGQLPFSDMSH*STPLAC
Trigger: GCAAGCCAGGGGTGTGCTCAAGTGTGACATGTCTGA...GAAAGGGAGCTGCCCTTCAATGGACAGATGCTCCAAGCTATAATGAGTTTTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp TATCATCTCTTACCCACACTATTGTGTTGCCATTTCTTCAGCTTGGAACAATCTATGATGCCCCGGGCGTaGGGTGTCTCCATGAGCCTC +
Preference number: 5 (lower is better)
Translates to: YHLLPTLLCCHFFSLEQSMMPRA*GVSMSL
Trigger: GAGGCTCATGGAGACACCCAACGCCCGGGGCATCAT...AGATTGTTCCAAGCTGAAGAAATGGCAACACAATAGTGTGGGTAAGAGATGATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp GTCAAAACTCATTATAGCTTGGAGCATCTGTCCATTGAAGGGCAGCTCCCTTTCTCGATTGAAGCCCTTTaGGGCAAGATGGTGATGGCC +
Preference number: 5 (lower is better)
Translates to: VKTHYSLEHLSIEGQLPFSIEAL*GKMVMA
Trigger: GGCCATCACCATCTTGCCCAAAAGGGCTTCAATCGA...GAAAGGGAGCTGCCCTTCAATGGACAGATGCTCCAAGCTATAATGAGTTTTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp TCCTATAGACAAGGCTTTGCCAAGAGAACACATTTCACACTTTTGAGGACTCAAAAGATGGGAGAGATCTaGGATCCCCAGCTGTCTGAG +
Preference number: 5 (lower is better)
Translates to: SYRQGFAKRTHFTLLRTQKMGEI*DPQLSE
Trigger: CTCAGACAGCTGGGGATCCAAGATCTCTCCCATCTT...TTGAGTCCTCAAAAGTGTGAAATGTGTTCTCTTGGCAAAGCCTTGTCTATAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp TCCATTGAAGGGCAGCTCCCTTTCAAAAATGAGTTCTGTACCTTAAATTCTGGATCGATTGAAGCCCTTTaGGGCAAGATGGTGATGGCC +
Preference number: 5 (lower is better)
Translates to: SIEGQLPFKNEFCTLNSGSIEAL*GKMVMA
Trigger: GGCCATCACCATCTTGCCCAAAAGGGCTTCAATCGA...TCCAGAATTTAAGGTACAGAACTCATTTTTGAAAGGGAGCTGCCCTTCAATGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp CAAGATAAATCTTATCAAACTTGGGCAAGCCCTGACTTTACCACGGGTTTGAATTGGCACTTCCATTGGTaGCTTGGTACTGGAAGATGT +
Preference number: 5 (lower is better)
Translates to: QDKSYQTWASPDFTTGLNWHFHW*LGTGRC
Trigger: ACATCTTCCAGTACCAAGCAACCAATGGAAGTGCCA...ATTCAAACCCGTGGTAAAGTCAGGGCTTGCCCAAGTTTGATAAGATTTATCTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS-3UTR CAA 90 bp TCCATTGAAGGGCAGCTCCCTTTCAAAAATGAGTTCTGTACCTTAAATTCTGGACCTGAGCTGGTTAGTTaGCAGTTAAAATTCTCTTCC +
Preference number: 5 (lower is better)
Translates to: SIEGQLPFKNEFCTLNSGPELVS*QLKFSS
Trigger: GGAAGAGAATTTTAACTGCAAACTAACCAGCTCAGG...TCCAGAATTTAAGGTACAGAACTCATTTTTGAAAGGGAGCTGCCCTTCAATGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS GCA 72 bp CGCCTGCCAGGCGCACCGAGCCCGCACCGTGAGCTATaGCCGCCTGCGACAGCCACCAGGCTAGCCACAGCA +
Preference number: 6 (lower is better)
Translates to: RLPGAPSPHREL*PPATATRLATA
Trigger: TGCTGTGGCTAGCCTGGTGGCTGTCGCAGGCGGGCATAGCTCACGGTGCGGGCTCGGTGCGCCTGGCAGGCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS TCA 72 bp GCACGCTGGCCTCTTCGCCGTCTCCGCGGCCTCGGATaGGCGCCTGCACGAAGCTCAGCGCCTGCTCCAGAG +
Preference number: 6 (lower is better)
Translates to: ARWPLRRLRGLG*APARSSAPAPE
Trigger: CTCTGGAGCAGGCGCTGAGCTTCGTGCAGGCGCTCATCCGAGGCCGCGGAGACGGCGAAGAGGCCAGCGTGC
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 72 bp GGCGCACCACGGGAGTGGGACGGCAGCCAGTGTGGTTaGGTGTCGGTCTCATGTGCCCTGGACAGGCCTCAC +
Preference number: 6 (lower is better)
Translates to: GAPREWDGSQCG*VSVSCALDRPH
Trigger: GTGAGGCCTGTCCAGGGCACATGAGACCGACACCCAACCACACTGGCTGCCGTCCCACTCCCGTGGTGCGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 72 bp GTCAGGCGCACCACGGGAGTGGGACGGCAGCCAGTGTaGTTGGGTGTCGGTCTCATGTGCCCTGGACAGGCC +
Preference number: 6 (lower is better)
Translates to: VRRTTGVGRQPV*LGVGLMCPGQA
Trigger: GGCCTGTCCAGGGCACATGAGACCGACACCCAACCACACTGGCTGCCGTCCCACTCCCGTGGTGCGCCTGAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 72 bp CCCACGGAGAGGACCAGGTCAGGCGCACCACGGGAGTaGGACGGCAGCCAGTGTGGTTGGGTGTCGGTCTCA +
Preference number: 6 (lower is better)
Translates to: PTERTRSGAPRE*DGSQCGWVSVS
Trigger: TGAGACCGACACCCAACCACACTGGCTGCCGTCCCACTCCCGTGGTGCGCCTGACCTGGTCCTCTCCGTGGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CAA 72 bp AGGCGCACCACGGGAGTGGGACGGCAGCCAGTGTGGTaGGGTGTCGGTCTCATGTGCCCTGGACAGGCCTCA +
Preference number: 6 (lower is better)
Translates to: RRTTGVGRQPVW*GVGLMCPGQAS
Trigger: TGAGGCCTGTCCAGGGCACATGAGACCGACACCCAACCACACTGGCTGCCGTCCCACTCCCGTGGTGCGCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CAA 90 bp GACCAGGTCAGGCGCACCACGGGAGTGGGACGGCAGCCAGTGTGGTaGGGTGTCGGTCTCATGTGCCCTGGACAGGCCTCACACGTGAAC +
Preference number: 6 (lower is better)
Translates to: DQVRRTTGVGRQPVW*GVGLMCPGQASHVN
Trigger: GTTCACGTGTGAGGCCTGTCCAGGGCACATGAGACCGACACCCAACCACACTGGCTGCCGTCCCACTCCCGTGGTGCGCCTGACCTGGTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS TCA 72 bp GTGTCGGTCTCATGTGCCCTGGACAGGCCTCACACGTaGACTCGTCCACCTGGAAGCGGTACCCGTCGCAGG +
Preference number: 6 (lower is better)
Translates to: VSVSCALDRPHT*TRPPGSGTRRR
Trigger: CCTGCGACGGGTACCGCTTCCAGGTGGACGAGTTCACGTGTGAGGCCTGTCCAGGGCACATGAGACCGACAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 72 bp TGCCCTGGACAGGCCTCACACGTGAACTCGTCCACCTaGAAGCGGTACCCGTCGCAGGCCTCACAGTGCCAA +
Preference number: 6 (lower is better)
Translates to: CPGQASHVNSST*KRYPSQASQCQ
Trigger: TTGGCACTGTGAGGCCTGCGACGGGTACCGCTTCCAGGTGGACGAGTTCACGTGTGAGGCCTGTCCAGGGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS GCA 72 bp GGTTGGGCCCCCAACCACGCTATCACTCCCACTACCTaGAGGGAGGTAAGGCCGAAGGTGATGACTAGCTGC +
Preference number: 6 (lower is better)
Translates to: GWAPNHAITPTT*REVRPKVMTSC
Trigger: GCAGCTAGTCATCACCTTCGGCCTTACCTCCCTGCAGGTAGTGGGAGTGATAGCGTGGTTGGGGGCCCAACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 72 bp TCCAGTCTAAGGGCCTCTGCCCATTGGCCCACAGCCTaGTACCCGCCACTGCTGGCACTTCCATTGGTTGCT +
Preference number: 6 (lower is better)
Translates to: SSLRASAHWPTA*YPPLLALPLVA
Trigger: AGCAACCAATGGAAGTGCCAGCAGTGGCGGGTACCAGGCTGTGGGCCAATGGGCAGAGGCCCTTAGACTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 72 bp GCAGCCAGTGTGGTTGGGTGTCGGTCTCATGTGCCCTaGACAGGCCTCACACGTGAACTCGTCCACCTGGAA +
Preference number: 6 (lower is better)
Translates to: AASVVGCRSHVP*TGLTRELVHLE
Trigger: TTCCAGGTGGACGAGTTCACGTGTGAGGCCTGTCCAGGGCACATGAGACCGACACCCAACCACACTGGCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS GCA 72 bp CATCACTGGGGTTCCTGCGCTACCATTGAAGCGGACTaGTCGGATGTAGTGCAGCAGGGTCCGGCCATCAGT +
Preference number: 6 (lower is better)
Translates to: HHWGSCATIEAD*SDVVQQGPAIS
Trigger: ACTGATGGCCGGACCCTGCTGCACTACATCCGAGCAGTCCGCTTCAATGGTAGCGCAGGAACCCCAGTGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 72 bp CCACAGCCTGGTACCCGCCACTGCTGGCACTTCCATTaGTTGCTTGGTACTGGAAGATGTCATAGCGCCCGG +
Preference number: 6 (lower is better)
Translates to: PQPGTRHCWHFH*LLGTGRCHSAR
Trigger: CCGGGCGCTATGACATCTTCCAGTACCAAGCAACCAATGGAAGTGCCAGCAGTGGCGGGTACCAGGCTGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 72 bp AGAGCTTCCATATCCAGTCTAAGGGCCTCTGCCCATTaGCCCACAGCCTGGTACCCGCCACTGCTGGCACTT +
Preference number: 6 (lower is better)
Translates to: RASISSLRASAH*PTAWYPPLLAL
Trigger: AAGTGCCAGCAGTGGCGGGTACCAGGCTGTGGGCCAATGGGCAGAGGCCCTTAGACTGGATATGGAAGCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CAA 90 bp GTCCACCGTCCTCTGTTCCTCATAGTCAATCACGCTGTGTGGAGGTaGGGCCCCCAACCACGCTATCACTCCCACTACCTGCAGGGAGGT +
Preference number: 6 (lower is better)
Translates to: VHRPLFLIVNHAVWR*GPQPRYHSHYLQGG
Trigger: ACCTCCCTGCAGGTAGTGGGAGTGATAGCGTGGTTGGGGGCCCAACCTCCACACAGCGTGATTGACTATGAGGAACAGAGGACGGTGGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 72 bp CCTGGCCGATGCGTTCCTCGCCTGTGCATTTCCGGGTaGAATCATCTGACTGGCCACCTGAGCTGGTTAGTT +
Preference number: 6 (lower is better)
Translates to: PGRCVPRLCISG*NHLTGHLSWLV
Trigger: AACTAACCAGCTCAGGTGGCCAGTCAGATGATTCCACCCGGAAATGCACAGGCGAGGAACGCATCGGCCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 72 bp CTGCCCATTGGCCCACAGCCTGGTACCCGCCACTGCTaGCACTTCCATTGGTTGCTTGGTACTGGAAGATGT +
Preference number: 6 (lower is better)
Translates to: LPIGPQPGTRHC*HFHWLLGTGRC
Trigger: ACATCTTCCAGTACCAAGCAACCAATGGAAGTGCCAGCAGTGGCGGGTACCAGGCTGTGGGCCAATGGGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 72 bp CACCGTCCTCTGTTCCTCATAGTCAATCACGCTGTGTaGAGGTTGGGCCCCCAACCACGCTATCACTCCCAC +
Preference number: 6 (lower is better)
Translates to: HRPLFLIVNHAV*RLGPQPRYHSH
Trigger: GTGGGAGTGATAGCGTGGTTGGGGGCCCAACCTCCACACAGCGTGATTGACTATGAGGAACAGAGGACGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS GCA 72 bp CCACAGGAAGTGGCCAGTCAGGTTTGCCTGGCGTGTTaGCTCCAAGACCCTCCTGATGTCATCTTCATTGGC +
Preference number: 6 (lower is better)
Translates to: PQEVASQVCLAC*LQDPPDVIFIG
Trigger: GCCAATGAAGATGACATCAGGAGGGTCTTGGAGGCAACACGCCAGGCAAACCTGACTGGCCACTTCCTGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS GCA 72 bp ACAGACCTGTGTGGCCTGGGCAGAGTGCTTGGTGCATaGTGTGCAGAGCATGAGCGATGGCATACACAGCAT +
Preference number: 6 (lower is better)
Translates to: TDLCGLGRVLGA*CAEHERWHTQH
Trigger: ATGCTGTGTATGCCATCGCTCATGCTCTGCACAGCATGCACCAAGCACTCTGCCCAGGCCACACAGGTCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CAA 72 bp CGGGCGTTGGGTGTCTCCATGAGCCTCCGGATCACTTaGTGGAATTCTCCTGGCTTTGGTTCCCTGGGAATC +
Preference number: 6 (lower is better)
Translates to: RALGVSMSLRIT*WNSPGFGSLGI
Trigger: GATTCCCAGGGAACCAAAGCCAGGAGAATTCCACAAAGTGATCCGGAGGCTCATGGAGACACCCAACGCCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CAA 72 bp CCTCTGTTCCTCATAGTCAATCACGCTGTGTGGAGGTaGGGCCCCCAACCACGCTATCACTCCCACTACCTG +
Preference number: 6 (lower is better)
Translates to: PLFLIVNHAVWR*GPQPRYHSHYL
Trigger: CAGGTAGTGGGAGTGATAGCGTGGTTGGGGGCCCAACCTCCACACAGCGTGATTGACTATGAGGAACAGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CAA 90 bp ATGATGCCCCGGGCGTTGGGTGTCTCCATGAGCCTCCGGATCACTTaGTGGAATTCTCCTGGCTTTGGTTCCCTGGGAATCTTTATTGAT +
Preference number: 6 (lower is better)
Translates to: MMPRALGVSMSLRIT*WNSPGFGSLGIFID
Trigger: ATCAATAAAGATTCCCAGGGAACCAAAGCCAGGAGAATTCCACAAAGTGATCCGGAGGCTCATGGAGACACCCAACGCCCGGGGCATCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CAA 72 bp GGAATTCTCCTGGCTTTGGTTCCCTGGGAATCTTTATaGATTGGGCAATACAGACACCTCCAGCCTCACGGG +
Preference number: 6 (lower is better)
Translates to: GILLALVPWESL*IGQYRHLQPHG
Trigger: CCCGTGAGGCTGGAGGTGTCTGTATTGCCCAATCAATAAAGATTCCCAGGGAACCAAAGCCAGGAGAATTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 72 bp TCCTCGCCTGTGCATTTCCGGGTGGAATCATCTGACTaGCCACCTGAGCTGGTTAGTTTGCAGTTAAAATTC +
Preference number: 6 (lower is better)
Translates to: SSPVHFRVESSD*PPELVSLQLKF
Trigger: GAATTTTAACTGCAAACTAACCAGCTCAGGTGGCCAGTCAGATGATTCCACCCGGAAATGCACAGGCGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CAA 72 bp ATAAAGTATTGGTCAAATCCGTCGATTGAAGCCCTTTaGGGCAAGATGGTGATGGCCCCCACAGCCTCTTCC +
Preference number: 6 (lower is better)
Translates to: IKYWSNPSIEAL*GKMVMAPTASS
Trigger: GGAAGAGGCTGTGGGGGCCATCACCATCTTGCCCAAAAGGGCTTCAATCGACGGATTTGACCAATACTTTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CAA 90 bp TCACTTTGTGGAATTCTCCTGGCTTTGGTTCCCTGGGAATCTTTATaGATTGGGCAATACAGACACCTCCAGCCTCACGGGAGATCTGCA +
Preference number: 6 (lower is better)
Translates to: SLCGILLALVPWESL*IGQYRHLQPHGRSA
Trigger: TGCAGATCTCCCGTGAGGCTGGAGGTGTCTGTATTGCCCAATCAATAAAGATTCCCAGGGAACCAAAGCCAGGAGAATTCCACAAAGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 72 bp CTGCGGTTGTTCTCCAGGGAACGAGTCATAAAGTATTaGTCAAATCCGTCGATTGAAGCCCTTTTGGGCAAG +
Preference number: 6 (lower is better)
Translates to: LRLFSRERVIKY*SNPSIEALLGK
Trigger: CTTGCCCAAAAGGGCTTCAATCGACGGATTTGACCAATACTTTATGACTCGTTCCCTGGAGAACAACCGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CCA 72 bp GGATCACTTTGTGGAATTCTCCTGGCTTTGGTTCCCTaGGAATCTTTATTGATTGGGCAATACAGACACCTC +
Preference number: 6 (lower is better)
Translates to: GSLCGILLALVP*ESLLIGQYRHL
Trigger: GAGGTGTCTGTATTGCCCAATCAATAAAGATTCCCAGGGAACCAAAGCCAGGAGAATTCCACAAAGTGATCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8
CDS CAA 72 bp GTGGAATCATCTGACTGGCCACCTGAGCTGGTTAGTTaGCAGTTAAAATTCTCTTCCCAGAACTCAGCAAAC +
Preference number: 6 (lower is better)
Translates to: VESSDWPPELVS*QLKFSSQNSAN
Trigger: GTTTGCTGAGTTCTGGGAAGAGAATTTTAACTGCAAACTAACCAGCTCAGGTGGCCAGTCAGATGATTCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000631.8
ENSMUST00000171427.8