RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GRM5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049583

Ensembl transcript IDs: ENSMUST00000107263.9, ENSMUST00000125009.9, ENSMUST00000155358.3

Found 359 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAGGTTCTCTGTTGGGGTGACTATGGGTGTCACTGCGCCCATCTGTaGACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCC +
Preference number: 1 (lower is better)
Translates to: QVLCWGDYGCHCAHL*TPRSAVQAYPRDVS
Trigger: GGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGATGGGCGCAGTGACACCCATAGTCACCCCAACAGAGAACCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR TCA 90 bp CCGTGTGTGCCCTTGGCATTTTTCACCTCAGGTTCTCTGTTGGGGTaGCTATGGGTGTCACTGCGCCCATCTGTGAACACCGAGGTCTGC +
Preference number: 1 (lower is better)
Translates to: PCVPLAFFTSGSLLG*LWVSLRPSVNTEVC
Trigger: GCAGACCTCGGTGTTCACAGATGGGCGCAGTGACACCCATAGTCACCCCAACAGAGAACCTGAGGTGAAAAATGCCAAGGGCACACACGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR CCA 90 bp TTCGGGATGTTGCTTCACACTGTTGCTGCCTCGGAGCAAAGCACTTaGTATTGTAACTGCTTAATCCACTCCTGGTCAGCACTCCAAAAA +
Preference number: 1 (lower is better)
Translates to: FGMLLHTVAASEQST*YCNCLIHSWSALQK
Trigger: TTTTTGGAGTGCTGACCAGGAGTGGATTAAGCAGTTACAATACCAAGTGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACATCCCGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR TCA 90 bp TTCTCAAATAAAGAAACAAGGAAGCTCATTGCGTATCTTACTATTTaGGCTTGCAACACTAACGGAAGGGTATTTATAAGGAGGAGTGCC +
Preference number: 1 (lower is better)
Translates to: FSNKETRKLIAYLTI*ACNTNGRVFIRRSA
Trigger: GGCACTCCTCCTTATAAATACCCTTCCGTTAGTGTTGCAAGCTCAAATAGTAAGATACGCAATGAGCTTCCTTGTTTCTTTATTTGAGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR TCA 90 bp CTTATGGGCATAGCAAAAACACCTGCTATGCTGACTTTCCTGTATTaGGATTCTGTTACTCTTATTAATTTCCACATCAGTCCCTCCAAT +
Preference number: 1 (lower is better)
Translates to: LMGIAKTPAMLTFLY*DSVTLINFHISPSN
Trigger: ATTGGAGGGACTGATGTGGAAATTAATAAGAGTAACAGAATCTCAATACAGGAAAGTCAGCATAGCAGGTGTTTTTGCTATGCCCATAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR TCA 90 bp AAGATGACCATAGATTCAGGTCTTGAGTTACAGTTTCTACCTATATaGGCCCACCAAATCCTGTATGTTATTGTAACTCTTTTCTGCAGT +
Preference number: 1 (lower is better)
Translates to: KMTIDSGLELQFLPI*AHQILYVIVTLFCS
Trigger: ACTGCAGAAAAGAGTTACAATAACATACAGGATTTGGTGGGCTCATATAGGTAGAAACTGTAACTCAAGACCTGAATCTATGGTCATCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR-3UTR TCA 90 bp CTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCGGAGCAAAGCACGGTTCTCTGTTGGGGTaGCTATGGGTGTCACTGCGC +
Preference number: 2 (lower is better)
Translates to: LFTVRDVASHCCCLGAKHGSLLG*LWVSLR
Trigger: GCGCAGTGACACCCATAGTCACCCCAACAGAGAACC...GTGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR-3UTR CCA 90 bp TGTCATGAATTAGCACTATTGATCTCATGTCTCCACCGTGTGTGCCCTTGGCATCCTCAGGTTCTCTGTTaGGGTGACTATGGGTGTCAC +
Preference number: 2 (lower is better)
Translates to: CHELALLISCLHRVCPWHPQVLC*GDYGCH
Trigger: GTGACACCCATAGTCACCCCAACAGAGAACCTGAGG...ATGCCAAGGGCACACACGGTGGAGACATGAGATCAATAGTGCTAATTCATGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR-3UTR CCA 90 bp GAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTCACCGTGTGTGCCCTTaGCATTTTTCACCTCAGGTT +
Preference number: 2 (lower is better)
Translates to: ESRMQAFGRVSHSLFGKSHRVCP*HFSPQV
Trigger: AACCTGAGGTGAAAAATGCCAAGGGCACACACGGTG...AGACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR-3UTR TCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGGGTTCTCTGTTGGGGTaGCTATGGGTGTCACTGCGC +
Preference number: 2 (lower is better)
Translates to: KVSARNSLFINTTLTTRLGSLLG*LWVSLR
Trigger: GCGCAGTGACACCCATAGTCACCCCAACAGAGAACC...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR-3UTR GCA 90 bp AGTTGCTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCGTGAACACCGAGGTCTaGTGTTCAGGCCTATCCCAG +
Preference number: 2 (lower is better)
Translates to: SCLLTPLFTVRDVASHCCVNTEV*CSGLSQ
Trigger: CTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCAC...GCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAGCAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR CAA 90 bp AGATGTGTAGTTGGTGTTGTCATCGGCTGTCATGAATTAGCACTATaGATCTCATGTCTCCACCGTGTGTGCCCTTGGCATTTTTCACCT +
Preference number: 2 (lower is better)
Translates to: RCVVGVVIGCHELAL*ISCLHRVCPWHFSP
Trigger: AGGTGAAAAATGCCAAGGGCACACACGGTGGAGACATGAGATCAATAGTGCTAATTCATGACAGCCGATGACAACACCAACTACACATCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR CAA 90 bp AGGTGGGACTGGGGGCAAAACAGCCACCAACAACAGAGGATCTCTTaGTATATCAGGTTCTCAAATAAAGAAACAAGGAAGCTCATTGCG +
Preference number: 2 (lower is better)
Translates to: RWDWGQNSHQQQRIS*YIRFSNKETRKLIA
Trigger: CGCAATGAGCTTCCTTGTTTCTTTATTTGAGAACCTGATATACAAAGAGATCCTCTGTTGTTGGTGGCTGTTTTGCCCCCAGTCCCACCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR-3UTR GCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGGTGAACACCGAGGTCTaGTGTTCAGGCCTATCCCAG +
Preference number: 2 (lower is better)
Translates to: KVSARNSLFINTTLTTRLVNTEV*CSGLSQ
Trigger: CTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCAC...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR-3UTR CCA 90 bp AGTTGCTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCCCTCAGGTTCTCTGTTaGGGTGACTATGGGTGTCAC +
Preference number: 2 (lower is better)
Translates to: SCLLTPLFTVRDVASHCCPQVLC*GDYGCH
Trigger: GTGACACCCATAGTCACCCCAACAGAGAACCTGAGG...GCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAGCAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR-3UTR CCA 90 bp AAAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCATCAAGGTCTACTGAATaGAGGGACCAGGGAAGGAAA +
Preference number: 2 (lower is better)
Translates to: KESRNLALVFLVNGIQDASRSTE*RDQGRK
Trigger: TTTCCTTCCCTGGTCCCTCCATTCAGTAGACCTTGA...TGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR-3UTR TCA 90 bp GAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTACTCTTCTGGGAAAATaGAGTAAACAAACAAGACTG +
Preference number: 2 (lower is better)
Translates to: ESRMQAFGRVSHSLFGKSTLLGK*SKQTRL
Trigger: CAGTCTTGTTTGTTTACTTCATTTTCCCAGAAGAGT...AGACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR-3UTR CCA 90 bp TCAAGGAAACTCAGTAAGAATAGGTACCCAAATAAATCGGGAAGTTTGTATCCTCACCGTGTGTGCCCTTaGCATTTTTCACCTCAGGTT +
Preference number: 2 (lower is better)
Translates to: SRKLSKNRYPNKSGSLYPHRVCP*HFSPQV
Trigger: AACCTGAGGTGAAAAATGCCAAGGGCACACACGGTG...AGGATACAAACTTCCCGATTTATTTGGGTACCTATTCTTACTGAGTTTCCTTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR CAA 90 bp AAGAGTATCTCACAGCCTGTTTGGAAAGTCTCTGCTAGAAACTCTTaGTTCATTAACACAACACTCACTACCCGTTTGTGTTACTCAGGA +
Preference number: 2 (lower is better)
Translates to: KSISQPVWKVSARNS*FINTTLTTRLCYSG
Trigger: TCCTGAGTAACACAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTTCCAAACAGGCTGTGAGATACTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR CAA 90 bp CAGACTGACTTGATTCTTCAACAGGAAGGTGAGCAGACCTTTGAGTaGATAAACTTAATCAAACCAGGTCTTTTCTTCCTTCCCAGAATC +
Preference number: 2 (lower is better)
Translates to: QTDLILQQEGEQTFE*INLIKPGLFFLPRI
Trigger: GATTCTGGGAAGGAAGAAAAGACCTGGTTTGATTAAGTTTATCAACTCAAAGGTCTGCTCACCTTCCTGTTGAAGAATCAAGTCAGTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR-3UTR TCA 90 bp ACTACTAGCTTCTCAAGGTCTACTGAATGGAGGGACCAGGGAAGGAAAGAAAAAACTCTTCTGGGAAAATaGAGTAAACAAACAAGACTG +
Preference number: 2 (lower is better)
Translates to: TTSFSRSTEWRDQGRKEKTLLGK*SKQTRL
Trigger: CAGTCTTGTTTGTTTACTTCATTTTCCCAGAAGAGT...TTTTTCTTTCCTTCCCTGGTCCCTCCATTCAGTAGACCTTGAGAAGCTAGTAGT
41% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR-3UTR CCA 90 bp CATTTGGTACCTGAGGATAGCTGCAATGTGACTAATAAAAAGATGACCATAGATCAGGATGCAGGCTTTTaGAAGAGTATCTCACAGCCT +
Preference number: 2 (lower is better)
Translates to: HLVPEDSCNVTNKKMTIDQDAGF*KSISQP
Trigger: AGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTG...ATCTATGGTCATCTTTTTATTAGTCACATTGCAGCTATCCTCAGGTACCAAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR-3UTR CCA 90 bp AAAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCATCGGAGCAAAGCACTTaGTATTGTAACTGCTTAATC +
Preference number: 2 (lower is better)
Translates to: KESRNLALVFLVNGIQDASEQST*YCNCLI
Trigger: GATTAAGCAGTTACAATACCAAGTGCTTTGCTCCGA...TGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR-3UTR GCA 90 bp ATATCAGAGATTCTCCCAGGCCTCATACCCTCTTCAAAGCAAATTCTGAATTATGTCTTTCTGATCACTTaGTGGTATATCAGTCGTTTG +
Preference number: 2 (lower is better)
Translates to: ISEILPGLIPSSKQILNYVFLIT*WYISRL
Trigger: CAAACGACTGATATACCAGCAAGTGATCAGAAAGAC...ATAATTCAGAATTTGCTTTGAAGAGGGTATGAGGCCTGGGAGAATCTCTGATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR-3UTR TCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGACAAAACAGAAAGGTTaGCTTTTTGGTCCCAGATTT +
Preference number: 2 (lower is better)
Translates to: KVSARNSLFINTTLTTRLTKQKG*LFGPRF
Trigger: AAATCTGGGACCAAAAAGTCAACCTTTCTGTTTTGT...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR-3UTR GCA 90 bp AAGATAAAATCACTACTTATGGGCATAGCAAAAACACCTGCTATGCTGACTTTCACTTGGTATTGTAACTaGTTAATCCACTCCTGGTCA +
Preference number: 2 (lower is better)
Translates to: KIKSLLMGIAKTPAMLTFTWYCN*LIHSWS
Trigger: TGACCAGGAGTGGATTAAGCAGTTACAATACCAAGT...GAAAGTCAGCATAGCAGGTGTTTTTGCTATGCCCATAAGTAGTGATTTTATCTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR-3UTR CCA 90 bp TCAAGGAAACTCAGTAAGAATAGGTACCCAAATAAATCGGGAAGTTTGTATCCTTTGCACTGGTTTTCTTaGTTAATGGAATCCAGGATG +
Preference number: 2 (lower is better)
Translates to: SRKLSKNRYPNKSGSLYPLHWFS*LMESRM
Trigger: CATCCTGGATTCCATTAACCAAGAAAACCAGTGCAA...AGGATACAAACTTCCCGATTTATTTGGGTACCTATTCTTACTGAGTTTCCTTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR-3UTR CCA 90 bp AAGATAAAATCACTACTTATGGGCATAGCAAAAACACCTGCTATGCTGACTTTCTACTCCAGTATTGATTaGCAACATGGTGAAAGAGTC +
Preference number: 2 (lower is better)
Translates to: KIKSLLMGIAKTPAMLTFYSSID*QHGERV
Trigger: GACTCTTTCACCATGTTGCCAATCAATACTGGAGTA...GAAAGTCAGCATAGCAGGTGTTTTTGCTATGCCCATAAGTAGTGATTTTATCTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR CAA 90 bp TCTCTTTGTATATCAGGTTCTCAAATAAAGAAACAAGGAAGCTCATaGCGTATCTTACTATTTGAGCTTGCAACACTAACGGAAGGGTAT +
Preference number: 2 (lower is better)
Translates to: SLCISGSQIKKQGSS*RILLFELATLTEGY
Trigger: ATACCCTTCCGTTAGTGTTGCAAGCTCAAATAGTAAGATACGCAATGAGCTTCCTTGTTTCTTTATTTGAGAACCTGATATACAAAGAGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR CAA 90 bp AGTTATGCATATTCCAACTGTTTATCACTGGGTATCAGGAACAGATaGTTATCAAGGAAACTCAGTAAGAATAGGTACCCAAATAAATCG +
Preference number: 2 (lower is better)
Translates to: SYAYSNCLSLGIRNR*LSRKLSKNRYPNKS
Trigger: CGATTTATTTGGGTACCTATTCTTACTGAGTTTCCTTGATAACAATCTGTTCCTGATACCCAGTGATAAACAGTTGGAATATGCATAACT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR-3UTR GCA 90 bp TCAAGGAAACTCAGTAAGAATAGGTACCCAAATAAATCGGGAAGTTTGTATCCTATATTAAGGTTCCTCTaGTTTAGTACTCTGTATTGC +
Preference number: 2 (lower is better)
Translates to: SRKLSKNRYPNKSGSLYPILRFL*FSTLYC
Trigger: GCAATACAGAGTACTAAAGCAGAGGAACCTTAATAT...AGGATACAAACTTCCCGATTTATTTGGGTACCTATTCTTACTGAGTTTCCTTGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR TCA 72 bp TGTTGGGGTGACTATGGGTGTCACTGCGCCCATCTGTaGACACCGAGGTCTGCTGTTCAGGCCTATCCCAGG +
Preference number: 3 (lower is better)
Translates to: CWGDYGCHCAHL*TPRSAVQAYPR
Trigger: CCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGATGGGCGCAGTGACACCCATAGTCACCCCAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR GCA 72 bp TGGGTGTCACTGCGCCCATCTGTGAACACCGAGGTCTaGTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGG +
Preference number: 3 (lower is better)
Translates to: WVSLRPSVNTEV*CSGLSQGCFQW
Trigger: CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGATGGGCGCAGTGACACCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR TCA 72 bp CCCTTGGCATTTTTCACCTCAGGTTCTCTGTTGGGGTaGCTATGGGTGTCACTGCGCCCATCTGTGAACACC +
Preference number: 3 (lower is better)
Translates to: PLAFFTSGSLLG*LWVSLRPSVNT
Trigger: GGTGTTCACAGATGGGCGCAGTGACACCCATAGTCACCCCAACAGAGAACCTGAGGTGAAAAATGCCAAGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR CCA 72 bp GCACTATTGATCTCATGTCTCCACCGTGTGTGCCCTTaGCATTTTTCACCTCAGGTTCTCTGTTGGGGTGAC +
Preference number: 3 (lower is better)
Translates to: ALLISCLHRVCP*HFSPQVLCWGD
Trigger: GTCACCCCAACAGAGAACCTGAGGTGAAAAATGCCAAGGGCACACACGGTGGAGACATGAGATCAATAGTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR CCA 72 bp TATCTTCATCAGGTCAATGGACCACTCTTCCATAGGTaGGACTGGGGGCAAAACAGCCACCAACAACAGAGG +
Preference number: 3 (lower is better)
Translates to: YLHQVNGPLFHR*DWGQNSHQQQR
Trigger: CCTCTGTTGTTGGTGGCTGTTTTGCCCCCAGTCCCACCTATGGAAGAGTGGTCCATTGACCTGATGAAGATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR TCA 72 bp TCTAGCCCCAGCCAAACACAGCCTCTCAGACTGACTTaGTTCTTCAACAGGAAGGTGAGCAGACCTTTGAGT +
Preference number: 3 (lower is better)
Translates to: SSPSQTQPLRLT*FFNRKVSRPLS
Trigger: ACTCAAAGGTCTGCTCACCTTCCTGTTGAAGAATCAAGTCAGTCTGAGAGGCTGTGTTTGGCTGGGGCTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR-3UTR CAA 90 bp GAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTTGTTGCTTCACACTGTaGCTGCCTCGGAGCAAAGCA +
Preference number: 3 (lower is better)
Translates to: ESRMQAFGRVSHSLFGKSCCFTL*LPRSKA
Trigger: TGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACA...AGACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR CCA 72 bp TTGCTTCACACTGTTGCTGCCTCGGAGCAAAGCACTTaGTATTGTAACTGCTTAATCCACTCCTGGTCAGCA +
Preference number: 3 (lower is better)
Translates to: LLHTVAASEQST*YCNCLIHSWSA
Trigger: TGCTGACCAGGAGTGGATTAAGCAGTTACAATACCAAGTGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR-3UTR CAA 90 bp AAAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCATGTTGCTTCACACTGTaGCTGCCTCGGAGCAAAGCA +
Preference number: 3 (lower is better)
Translates to: KESRNLALVFLVNGIQDACCFTL*LPRSKA
Trigger: TGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACA...TGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR-3UTR CAA 90 bp TGGAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCATGAATTAGCACTATaGATCTCATGTCTCCACCGT +
Preference number: 3 (lower is better)
Translates to: WNPGCRLLEEYLTACLESHELAL*ISCLHR
Trigger: ACGGTGGAGACATGAGATCAATAGTGCTAATTCATG...ACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR CCA 72 bp TCAGACACTAACCCCAGGCAAATGCCACCTTTTTGGTaGATACCAAGGGACATTGACATTTCAGAATGTTTA +
Preference number: 3 (lower is better)
Translates to: SDTNPRQMPPFW*IPRDIDISECL
Trigger: TAAACATTCTGAAATGTCAATGTCCCTTGGTATCCACCAAAAAGGTGGCATTTGCCTGGGGTTAGTGTCTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR CCA 72 bp AAATCAGACACTAACCCCAGGCAAATGCCACCTTTTTaGTGGATACCAAGGGACATTGACATTTCAGAATGT +
Preference number: 3 (lower is better)
Translates to: KSDTNPRQMPPF*WIPRDIDISEC
Trigger: ACATTCTGAAATGTCAATGTCCCTTGGTATCCACCAAAAAGGTGGCATTTGCCTGGGGTTAGTGTCTGATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR-3UTR CAA 90 bp CATTTGGTACCTGAGGATAGCTGCAATGTGACTAATAAAAAGATGACCATAGATCATGAATTAGCACTATaGATCTCATGTCTCCACCGT +
Preference number: 3 (lower is better)
Translates to: HLVPEDSCNVTNKKMTIDHELAL*ISCLHR
Trigger: ACGGTGGAGACATGAGATCAATAGTGCTAATTCATG...ATCTATGGTCATCTTTTTATTAGTCACATTGCAGCTATCCTCAGGTACCAAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR-3UTR CAA 90 bp ATATCAGAGATTCTCCCAGGCCTCATACCCTCTTCAAAGCAAATTCTGAATTATAGAGATTCTGACAGCTaGAGGGTTATTAATAAGCTG +
Preference number: 3 (lower is better)
Translates to: ISEILPGLIPSSKQILNYRDSDS*RVINKL
Trigger: CAGCTTATTAATAACCCTCAAGCTGTCAGAATCTCT...ATAATTCAGAATTTGCTTTGAAGAGGGTATGAGGCCTGGGAGAATCTCTGATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR-3UTR CAA 90 bp ATATCAGAGATTCTCCCAGGCCTCATACCCTCTTCAAAGCAAATTCTGAATTATAACAAAACAGAAAGGTaGACTTTTTGGTCCCAGATT +
Preference number: 3 (lower is better)
Translates to: ISEILPGLIPSSKQILNYNKTER*TFWSQI
Trigger: AATCTGGGACCAAAAAGTCAACCTTTCTGTTTTGTT...ATAATTCAGAATTTGCTTTGAAGAGGGTATGAGGCCTGGGAGAATCTCTGATAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR-3UTR CAA 90 bp TCAAGGAAACTCAGTAAGAATAGGTACCCAAATAAATCGGGAAGTTTGTATCCTTTTCAGAATGTTTACTaGGGTTTTCAGGTAGAGGCA +
Preference number: 3 (lower is better)
Translates to: SRKLSKNRYPNKSGSLYPFQNVY*GFQVEA
Trigger: TGCCTCTACCTGAAAACCCAAGTAAACATTCTGAAA...AGGATACAAACTTCCCGATTTATTTGGGTACCTATTCTTACTGAGTTTCCTTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR TCA 72 bp AAAGAAACAAGGAAGCTCATTGCGTATCTTACTATTTaGGCTTGCAACACTAACGGAAGGGTATTTATAAGG +
Preference number: 3 (lower is better)
Translates to: KETRKLIAYLTI*ACNTNGRVFIR
Trigger: CCTTATAAATACCCTTCCGTTAGTGTTGCAAGCTCAAATAGTAAGATACGCAATGAGCTTCCTTGTTTCTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR TCA 72 bp ATAGATTCAGGTCTTGAGTTACAGTTTCTACCTATATaGGCCCACCAAATCCTGTATGTTATTGTAACTCTT +
Preference number: 3 (lower is better)
Translates to: IDSGLELQFLPI*AHQILYVIVTL
Trigger: AAGAGTTACAATAACATACAGGATTTGGTGGGCTCATATAGGTAGAAACTGTAACTCAAGACCTGAATCTAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR TCA 72 bp TTCTCCCAGGCCTCATACCCTCTTCAAAGCAAATTCTaGATTATCTTTATGCTTTCACTGATCTGTATTTTT +
Preference number: 3 (lower is better)
Translates to: FSQASYPLQSKF*IIFMLSLICIF
Trigger: AAAAATACAGATCAGTGAAAGCATAAAGATAATTCAGAATTTGCTTTGAAGAGGGTATGAGGCCTGGGAGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR TCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGGGTGGCTCAGCGTACTaGTGGGCGATGGCGAGCGCG +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWGGSAY*WAMASA
Trigger: CGCGCTCGCCATCGCCCATCAGTACGCTGAGCCACC...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGCGCTGCCACAGGTGCTaGCCCCGGGTGCTCTTCTCA +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWRCHRC*PRVLFS
Trigger: TGAGAAGAGCACCCGGGGGCAGCACCTGTGGCAGCG...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGTGGACAGACAGTCGCTaGCACAGGTGCTGCCCCCGG +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWWTDSR*HRCCPR
Trigger: CCGGGGGCAGCACCTGTGGCAGCGACTGTCTGTCCA...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp CTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCGGAGCAAAGCACGCCACCACCTGCCCCTaGACCCTGCCCGCGGCTCTC +
Preference number: 4 (lower is better)
Translates to: LFTVRDVASHCCCLGAKHATTCP*TLPAAL
Trigger: GAGAGCCGCGGGCAGGGTGCAGGGGCAGGTGGTGGC...GTGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGCTCCGGTCACCTCGATaGCCGGCAGAGGCTGGATCT +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWLRSPR*PAEAGS
Trigger: AGATCCAGCCTCTGCCGGCCATCGAGGTGACCGGAG...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGCCTGAAGGGCGATGGTaGAGTGAGGGCCACCAGCTC +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWPEGRW*SEGHQL
Trigger: GAGCTGGTGGCCCTCACTCCACCATCGCCCTTCAGG...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp TGTCATGAATTAGCACTATTGATCTCATGTCTCCACCGTGTGTGCCCTTGGCATGCCACCACCTGCCCCTaGACCCTGCCCGCGGCTCTC +
Preference number: 4 (lower is better)
Translates to: CHELALLISCLHRVCPWHATTCP*TLPAAL
Trigger: GAGAGCCGCGGGCAGGGTGCAGGGGCAGGTGGTGGC...ATGCCAAGGGCACACACGGTGGAGACATGAGATCAATAGTGCTAATTCATGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp TGGAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTGCCAGAGCCACCACCTaGCCCTGCACCCTGCCCGCG +
Preference number: 4 (lower is better)
Translates to: WNPGCRLLEEYLTACLESARATT*PCTLPA
Trigger: CGCGGGCAGGGTGCAGGGGCAGGTGGTGGCTCTGGC...ACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGCTGTCAAGTCGTCAGTaGGCCAGGACCCCAGTTGGC +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWLSSRQ*ARTPVG
Trigger: GCCAACTGGGGTCCTGGCCCACTGACGACTTGACAG...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGTCCATGAGCGAGCCCTaGGATGAGCTGCTGCGTGCA +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWSMSEP*DELLRA
Trigger: TGCACGCAGCAGCTCATCCCAGGGCTCGCTCATGGA...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGATGGCCGGCAGAGGCTaGATCTCTGCGAAGGTCGTC +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWMAGRG*ISAKVV
Trigger: GACGACCTTCGCAGAGATCCAGCCTCTGCCGGCCAT...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp CTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCGGAGCAAAGCACAGGGCGATGGTGGAGTaGGGGCCACCAGCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: LFTVRDVASHCCCLGAKHRAMVE*GPPAPP
Trigger: TGGAGGAGCTGGTGGCCCTCACTCCACCATCGCCCT...GTGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGGGCAAACACCACAGCTaGAATGGGCTCAGGGTCACC +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWGKHHS*NGLRVT
Trigger: GGTGACCCTGAGCCCATTGCAGCTGTGGTGTTTGCC...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGGGCTGCTGGATCTGCTaGCAGCGGATGATGACTTGC +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWGCWIC*QRMMTC
Trigger: GCAAGTCATCATCCGCTGCCAGCAGATCCAGCAGCC...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp TGGAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTTGGGGCCGGCGTCTaGTGGCTCTGGGCCGCCTGT +
Preference number: 4 (lower is better)
Translates to: WNPGCRLLEEYLTACLESLGAGV*WLWAAC
Trigger: ACAGGCGGCCCAGAGCCACCAGACGCCGGCCCCAAG...ACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGCTGCGAAGGTCGTCATaGTCGTGGGCAGCTGGATCT +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWLRRSS*SWAAGS
Trigger: AGATCCAGCTGCCCACGACCATGACGACCTTCGCAG...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGGCCAGAGCCACCACCTaGCCCTGCACCCTGCCCGCG +
Preference number: 4 (lower is better)
Translates to: KSPEILHWFSWLMESRMQARATT*PCTLPA
Trigger: CGCGGGCAGGGTGCAGGGGCAGGTGGTGGCTCTGGC...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGCTTCGTTACAAGGGCTaGGTAGCTCATGGCTGGAGA +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWLRYKG*VAHGWR
Trigger: TCTCCAGCCATGAGCTACTCAGCCCTTGTAACGAAG...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGCAGCCCAGCCATCACTaGCCAGAAGTAGAAATTCCC +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWQPSHH*PEVEIP
Trigger: GGGAATTTCTACTTCTGGGCAGTGATGGCTGGGCTG...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp TGTCATGAATTAGCACTATTGATCTCATGTCTCCACCGTGTGTGCCCTTGGCATGGTGCTGCCCCCGGGTaGTCTTCTCATTCTGGGCCC +
Preference number: 4 (lower is better)
Translates to: CHELALLISCLHRVCPWHGAAPG*SSHSGP
Trigger: GGGCCCAGAATGAGAAGAGCACCCGGGGGCAGCACC...ATGCCAAGGGCACACACGGTGGAGACATGAGATCAATAGTGCTAATTCATGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp TGGAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTAGTCGCTGCCACAGGTaGTGCCCCCGGGTGCTCTTC +
Preference number: 4 (lower is better)
Translates to: WNPGCRLLEEYLTACLESSRCHR*CPRVLF
Trigger: GAAGAGCACCCGGGGGCAGCACCTGTGGCAGCGACT...ACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp CTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCGGAGCAAAGCACATGGCCGGCAGAGGCTaGATCTCTGCGAAGGTCGTC +
Preference number: 4 (lower is better)
Translates to: LFTVRDVASHCCCLGAKHMAGRG*ISAKVV
Trigger: GACGACCTTCGCAGAGATCCAGCCTCTGCCGGCCAT...GTGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp CTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTGGTGGCTCAGCGTACTaGTGGGCGATGGCGAGCGCG +
Preference number: 4 (lower is better)
Translates to: LINSTFYCSGCCFTLLLPGGSAY*WAMASA
Trigger: CGCGCTCGCCATCGCCCATCAGTACGCTGAGCCACC...AGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGCGTCTCTTGGGCAGGTaGTGGCCCTGTCGCCGGCTG +
Preference number: 4 (lower is better)
Translates to: KSPEILHWFSWLMESRMQRLLGR*WPCRRL
Trigger: CAGCCGGCGACAGGGCCATCACCTGCCCAAGAGACG...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp CTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCGTCTCTTGGGCAGGTaGTGGCCCTGTCGCCGGCTG +
Preference number: 4 (lower is better)
Translates to: LINSTFYCSGCCFTLLLPRLLGR*WPCRRL
Trigger: CAGCCGGCGACAGGGCCATCACCTGCCCAAGAGACG...AGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGCGTACTGATGGGCGATaGCGAGCGCGGCCTGGCAGC +
Preference number: 4 (lower is better)
Translates to: KSPEILHWFSWLMESRMQRTDGR*RARPGS
Trigger: GCTGCCAGGCCGCGCTCGCCATCGCCCATCAGTACG...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp GAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTCCTGAAGGGCGATGGTaGAGTGAGGGCCACCAGCTC +
Preference number: 4 (lower is better)
Translates to: ESRMQAFGRVSHSLFGKSPEGRW*SEGHQL
Trigger: GAGCTGGTGGCCCTCACTCCACCATCGCCCTTCAGG...AGACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp TGGAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTGGAGAGTTTGGGGTaGTGCTCCCCGAGTCCACCG +
Preference number: 4 (lower is better)
Translates to: WNPGCRLLEEYLTACLESLESLG*CSPSPP
Trigger: CGGTGGACTCGGGGAGCACCACCCCAAACTCTCCAG...ACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGGTTTGGGCTTTGCAATaGGGCAGAAGGTACACAAGT +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWVWALQ*GRRYTS
Trigger: ACTTGTGTACCTTCTGCCTCATTGCAAAGCCCAAAC...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp CTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCGGAGCAAAGCACCTAGGCTGCTGGATCTaGTGGCAGCGGATGATGACT +
Preference number: 4 (lower is better)
Translates to: LFTVRDVASHCCCLGAKHLGCWI*WQRMMT
Trigger: AGTCATCATCCGCTGCCAGCAGATCCAGCAGCCTAG...GTGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGAGCCCTGGGATGAGCTaGTGCGTGCAGCGGTCTCCG +
Preference number: 4 (lower is better)
Translates to: KSPEILHWFSWLMESRMQSPGMS*CVQRSP
Trigger: CGGAGACCGCTGCACGCAGCAGCTCATCCCAGGGCT...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGAACTTTGTCCACAGTTaGTTGGTGGTGGACCGAGAA +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWNFVHS*LVVDRE
Trigger: TTCTCGGTCCACCACCAACCAACTGTGGACAAAGTT...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGCTTGGGGCCGGCGTCTaGTGGCTCTGGGCCGCCTGT +
Preference number: 4 (lower is better)
Translates to: KVSARNSLFINTTLTTRLLGAGV*WLWAAC
Trigger: ACAGGCGGCCCAGAGCCACCAGACGCCGGCCCCAAG...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp GAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTGGAGACTGGAGAGTTTaGGGTGGTGCTCCCCGAGTC +
Preference number: 4 (lower is better)
Translates to: ESRMQAFGRVSHSLFGKSGDWRV*GGAPRV
Trigger: GACTCGGGGAGCACCACCCCAAACTCTCCAGTCTCC...AGACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGTGCTGCCAAAATTCTTaGAACCAAGGGTTTCTGAGG +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWCCQNS*NQGFLR
Trigger: CCTCAGAAACCCTTGGTTTCAAGAATTTTGGCAGCA...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp GAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTCCCTGCTGGAAGACTTaGCCACTGGAGTGTCCCGAT +
Preference number: 4 (lower is better)
Translates to: ESRMQAFGRVSHSLFGKSPCWKT*PLECPD
Trigger: ATCGGGACACTCCAGTGGTCAAGTCTTCCAGCAGGG...AGACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp CTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCGGAGCAAAGCACCAGCCCAGCCATCACTaGCCAGAAGTAGAAATTCCC +
Preference number: 4 (lower is better)
Translates to: LFTVRDVASHCCCLGAKHQPSHH*PEVEIP
Trigger: GGGAATTTCTACTTCTGGGCAGTGATGGCTGGGCTG...GTGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp GAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTTGGGAGAGGATGGGATaGAGAGGGCCGATTCGGAGA +
Preference number: 4 (lower is better)
Translates to: ESRMQAFGRVSHSLFGKSWERMG*RGPIRR
Trigger: TCTCCGAATCGGCCCTCTGCATCCCATCCTCTCCCA...AGACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp TGGAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTACACCACAGCTGCAATaGGCTCAGGGTCACCCCATC +
Preference number: 4 (lower is better)
Translates to: WNPGCRLLEEYLTACLESTPQLQ*AQGHPI
Trigger: GATGGGGTGACCCTGAGCCCATTGCAGCTGTGGTGT...ACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp CTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCTCCGGTCACCTCGATaGCCGGCAGAGGCTGGATCT +
Preference number: 4 (lower is better)
Translates to: LINSTFYCSGCCFTLLLPLRSPR*PAEAGS
Trigger: AGATCCAGCCTCTGCCGGCCATCGAGGTGACCGGAG...AGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp CTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCTGGAGAGTTTGGGGTaGTGCTCCCCGAGTCCACCG +
Preference number: 4 (lower is better)
Translates to: LINSTFYCSGCCFTLLLPLESLG*CSPSPP
Trigger: CGGTGGACTCGGGGAGCACCACCCCAAACTCTCCAG...AGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGCGGGCTTTAGGTAAATaGCTTCTGAGCTTTTTCAAC +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWRALGK*LLSFFN
Trigger: GTTGAAAAAGCTCAGAAGTCATTTACCTAAAGCCCG...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp GAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTTGCATCACAGAGGCCTaGATAGCCTGGACACAGGGA +
Preference number: 4 (lower is better)
Translates to: ESRMQAFGRVSHSLFGKSCITEA*IAWTQG
Trigger: TCCCTGTGTCCAGGCTATGCAGGCCTCTGTGATGCA...AGACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp TGGAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTTGCATCACAGAGGCCTaGATAGCCTGGACACAGGGA +
Preference number: 4 (lower is better)
Translates to: WNPGCRLLEEYLTACLESCITEA*IAWTQG
Trigger: TCCCTGTGTCCAGGCTATGCAGGCCTCTGTGATGCA...ACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp ATATCAGAGATTCTCCCAGGCCTCATACCCTCTTCAAAGCAAATTCTGAATTATCGCTGCCACAGGTGCTaGCCCCGGGTGCTCTTCTCA +
Preference number: 4 (lower is better)
Translates to: ISEILPGLIPSSKQILNYRCHRC*PRVLFS
Trigger: TGAGAAGAGCACCCGGGGGCAGCACCTGTGGCAGCG...ATAATTCAGAATTTGCTTTGAAGAGGGTATGAGGCCTGGGAGAATCTCTGATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR GCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGAGTCGCTGCCACAGGTaGTGCCCCCGGGTGCTCTTC +
Preference number: 4 (lower is better)
Translates to: KVSARNSLFINTTLTTRLSRCHR*CPRVLF
Trigger: GAAGAGCACCCGGGGGCAGCACCTGTGGCAGCGACT...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp CTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTGAGAGTTTGGGGTGGTaGTCCCCGAGTCCACCGAGT +
Preference number: 4 (lower is better)
Translates to: LINSTFYCSGCCFTLLLPESLGW*SPSPPS
Trigger: ACTCGGTGGACTCGGGGAGCACCACCCCAAACTCTC...AGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGCTGTCAAGTCGTCAGTaGGCCAGGACCCCAGTTGGC +
Preference number: 4 (lower is better)
Translates to: KSPEILHWFSWLMESRMQLSSRQ*ARTPVG
Trigger: GCCAACTGGGGTCCTGGCCCACTGACGACTTGACAG...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp CTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCATCATAAAGCGCCTTaGGGCCGGCGTCTGGTGGCT +
Preference number: 4 (lower is better)
Translates to: LINSTFYCSGCCFTLLLPHHKAP*GRRLVA
Trigger: AGCCACCAGACGCCGGCCCCAAGGCGCTTTATGATG...AGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp AAGATAAAATCACTACTTATGGGCATAGCAAAAACACCTGCTATGCTGACTTTCCGTACTGATGGGCGATaGCGAGCGCGGCCTGGCAGC +
Preference number: 4 (lower is better)
Translates to: KIKSLLMGIAKTPAMLTFRTDGR*RARPGS
Trigger: GCTGCCAGGCCGCGCTCGCCATCGCCCATCAGTACG...GAAAGTCAGCATAGCAGGTGTTTTTGCTATGCCCATAAGTAGTGATTTTATCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR CCA 90 bp TGTCATGAATTAGCACTATTGATCTCATGTCTCCACCGTGTGTGCCCTTGGCATATGGTCGTGGGCAGCTaGATCTCTTTGGGGATCAGG +
Preference number: 4 (lower is better)
Translates to: CHELALLISCLHRVCPWHMVVGS*ISLGIR
Trigger: CCTGATCCCCAAAGAGATCCAGCTGCCCACGACCAT...ATGCCAAGGGCACACACGGTGGAGACATGAGATCAATAGTGCTAATTCATGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp CTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCAGATCCGGTTTTCCTaGGGCGGCTTCAGCTCCTGC +
Preference number: 4 (lower is better)
Translates to: LINSTFYCSGCCFTLLLPQIRFS*GGFSSC
Trigger: GCAGGAGCTGAAGCCGCCCCAGGAAAACCGGATCTG...AGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGAGGTTGTGTACATGGTaGAAGCAATATATTTGGCCT +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWRLCTW*KQYIWP
Trigger: AGGCCAAATATATTGCTTTCACCATGTACACAACCT...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp TGGAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCCGGTTTGGCTAGGATaGTGTACACCTTCGGCACAA +
Preference number: 4 (lower is better)
Translates to: WNPGCRLLEEYLTACLESPVWLG*CTPSAQ
Trigger: TTGTGCCGAAGGTGTACATCATCCTAGCCAAACCGG...ACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp CTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCGGAGCAAAGCACGGTTCTCCTTCTTGTTaGTATGGACAGACAGTCGCT +
Preference number: 4 (lower is better)
Translates to: LFTVRDVASHCCCLGAKHGSPSC*YGQTVA
Trigger: AGCGACTGTCTGTCCATATCAACAAGAAGGAGAACC...GTGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp AAGATAAAATCACTACTTATGGGCATAGCAAAAACACCTGCTATGCTGACTTTCAGGGCGATGGTGGAGTaGGGGCCACCAGCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: KIKSLLMGIAKTPAMLTFRAMVE*GPPAPP
Trigger: TGGAGGAGCTGGTGGCCCTCACTCCACCATCGCCCT...GAAAGTCAGCATAGCAGGTGTTTTTGCTATGCCCATAAGTAGTGATTTTATCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR GCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGAGTAGACTTCTCGGATaGTTGGATAGTCATGCATTA +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWSRLLG*LDSHAL
Trigger: TAATGCATGACTATCCAAGCATCCGAGAAGTCTACT...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp TCAAGGAAACTCAGTAAGAATAGGTACCCAAATAAATCGGGAAGTTTGTATCCTGGTGCTGCCCCCGGGTaGTCTTCTCATTCTGGGCCC +
Preference number: 4 (lower is better)
Translates to: SRKLSKNRYPNKSGSLYPGAAPG*SSHSGP
Trigger: GGGCCCAGAATGAGAAGAGCACCCGGGGGCAGCACC...AGGATACAAACTTCCCGATTTATTTGGGTACCTATTCTTACTGAGTTTCCTTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR GCA 90 bp CATTTGGTACCTGAGGATAGCTGCAATGTGACTAATAAAAAGATGACCATAGATTGGACAGACAGTCGCTaGCACAGGTGCTGCCCCCGG +
Preference number: 4 (lower is better)
Translates to: HLVPEDSCNVTNKKMTIDWTDSR*HRCCPR
Trigger: CCGGGGGCAGCACCTGTGGCAGCGACTGTCTGTCCA...ATCTATGGTCATCTTTTTATTAGTCACATTGCAGCTATCCTCAGGTACCAAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR GCA 90 bp TCAAGGAAACTCAGTAAGAATAGGTACCCAAATAAATCGGGAAGTTTGTATCCTAGCCCTGGGATGAGCTaGTGCGTGCAGCGGTCTCCG +
Preference number: 4 (lower is better)
Translates to: SRKLSKNRYPNKSGSLYPSPGMS*CVQRSP
Trigger: CGGAGACCGCTGCACGCAGCAGCTCATCCCAGGGCT...AGGATACAAACTTCCCGATTTATTTGGGTACCTATTCTTACTGAGTTTCCTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR CCA 90 bp CTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCGGAGCAAAGCACAACTTTGTCCACAGTTaGTTGGTGGTGGACCGAGAA +
Preference number: 4 (lower is better)
Translates to: LFTVRDVASHCCCLGAKHNFVHS*LVVDRE
Trigger: TTCTCGGTCCACCACCAACCAACTGTGGACAAAGTT...GTGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp AGTTGCTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTCCATGAGCGAGCCCTaGGATGAGCTGCTGCGTGCA +
Preference number: 4 (lower is better)
Translates to: SCLLTPLFTVRDVASHCCSMSEP*DELLRA
Trigger: TGCACGCAGCAGCTCATCCCAGGGCTCGCTCATGGA...GCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAGCAACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp GAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTGCAGCTGGATCTCTTTaGGGATCAGGTAGGAAGAGC +
Preference number: 4 (lower is better)
Translates to: ESRMQAFGRVSHSLFGKSAAGSL*GSGRKS
Trigger: GCTCTTCCTACCTGATCCCCAAAGAGATCCAGCTGC...AGACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp CTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCGGAGCAAAGCACAATCATCAAACCACTTaGCATCAGGAGACTGGAGCT +
Preference number: 4 (lower is better)
Translates to: LFTVRDVASHCCCLGAKHNHQTT*HQETGA
Trigger: AGCTCCAGTCTCCTGATGTCAAGTGGTTTGATGATT...GTGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp GAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTCCTTCTAGCCGGCACTaGAAACGATGCTGCCAAAAT +
Preference number: 4 (lower is better)
Translates to: ESRMQAFGRVSHSLFGKSPSSRH*KRCCQN
Trigger: ATTTTGGCAGCATCGTTTTCAGTGCCGGCTAGAAGG...AGACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp ACTACTAGCTTCTCAAGGTCTACTGAATGGAGGGACCAGGGAAGGAAAGAAAAACTTCGTTACAAGGGCTaGGTAGCTCATGGCTGGAGA +
Preference number: 4 (lower is better)
Translates to: TTSFSRSTEWRDQGRKEKLRYKG*VAHGWR
Trigger: TCTCCAGCCATGAGCTACTCAGCCCTTGTAACGAAG...TTTTTCTTTCCTTCCCTGGTCCCTCCATTCAGTAGACCTTGAGAAGCTAGTAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp TGGAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCAAAGGCCAGCCATATaGTGCAGGTTGTGTACATGG +
Preference number: 4 (lower is better)
Translates to: WNPGCRLLEEYLTACLESQRPAI*CRLCTW
Trigger: CCATGTACACAACCTGCATCATATGGCTGGCCTTTG...ACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp TGTCATGAATTAGCACTATTGATCTCATGTCTCCACCGTGTGTGCCCTTGGCATCTGGAGAGAGACCGATaGCAATTCTCTGAAGGTAGC +
Preference number: 4 (lower is better)
Translates to: CHELALLISCLHRVCPWHLERDR*QFSEGS
Trigger: GCTACCTTCAGAGAATTGGCATCGGTCTCTCTCCAG...ATGCCAAGGGCACACACGGTGGAGACATGAGATCAATAGTGCTAATTCATGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp AAAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCACCTTCGGCACAAACATaGAACCCAGGGCCACTGTGG +
Preference number: 4 (lower is better)
Translates to: KESRNLALVFLVNGIQDAPSAQT*NPGPLW
Trigger: CCACAGTGGCCCTGGGTTGCATGTTTGTGCCGAAGG...TGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGGAGAGTTTGGGGTGGTaGTCCCCGAGTCCACCGAGT +
Preference number: 4 (lower is better)
Translates to: KVSARNSLFINTTLTTRLESLGW*SPSPPS
Trigger: ACTCGGTGGACTCGGGGAGCACCACCCCAAACTCTC...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp AAAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCATGGGAGAGGATGGGATaGAGAGGGCCGATTCGGAGA +
Preference number: 4 (lower is better)
Translates to: KESRNLALVFLVNGIQDAWERMG*RGPIRR
Trigger: TCTCCGAATCGGCCCTCTGCATCCCATCCTCTCCCA...TGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp TGTCATGAATTAGCACTATTGATCTCATGTCTCCACCGTGTGTGCCCTTGGCATCCACTATGGGTTTCTTaGAGCGGAAGGAAGAAGAGC +
Preference number: 4 (lower is better)
Translates to: CHELALLISCLHRVCPWHPLWVS*SGRKKS
Trigger: GCTCTTCTTCCTTCCGCTCCAAGAAACCCATAGTGG...ATGCCAAGGGCACACACGGTGGAGACATGAGATCAATAGTGCTAATTCATGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp GAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTCCACTATGGGTTTCTTaGAGCGGAAGGAAGAAGAGC +
Preference number: 4 (lower is better)
Translates to: ESRMQAFGRVSHSLFGKSPLWVS*SGRKKS
Trigger: GCTCTTCTTCCTTCCGCTCCAAGAAACCCATAGTGG...AGACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGTATTTCATACCTTCCTaGAGAGTCTCCATTTTCATC +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWYFIPS*RVSIFI
Trigger: GATGAAAATGGAGACTCTCCAGGAAGGTATGAAATA...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGCATCATAAAGCGCCTTaGGGCCGGCGTCTGGTGGCT +
Preference number: 4 (lower is better)
Translates to: KVSARNSLFINTTLTTRLHHKAP*GRRLVA
Trigger: AGCCACCAGACGCCGGCCCCAAGGCGCTTTATGATG...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp AAAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCACTGCGAAGGTCGTCATaGTCGTGGGCAGCTGGATCT +
Preference number: 4 (lower is better)
Translates to: KESRNLALVFLVNGIQDALRRSS*SWAAGS
Trigger: AGATCCAGCTGCCCACGACCATGACGACCTTCGCAG...TGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp ATATCAGAGATTCTCCCAGGCCTCATACCCTCTTCAAAGCAAATTCTGAATTATGGAGACTGGAGAGTTTaGGGTGGTGCTCCCCGAGTC +
Preference number: 4 (lower is better)
Translates to: ISEILPGLIPSSKQILNYGDWRV*GGAPRV
Trigger: GACTCGGGGAGCACCACCCCAAACTCTCCAGTCTCC...ATAATTCAGAATTTGCTTTGAAGAGGGTATGAGGCCTGGGAGAATCTCTGATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR TCA 90 bp CTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCGGAGCAAAGCACCGGGCTTTAGGTAAATaGCTTCTGAGCTTTTTCAAC +
Preference number: 4 (lower is better)
Translates to: LFTVRDVASHCCCLGAKHRALGK*LLSFFN
Trigger: GTTGAAAAAGCTCAGAAGTCATTTACCTAAAGCCCG...GTGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp ACTACTAGCTTCTCAAGGTCTACTGAATGGAGGGACCAGGGAAGGAAAGAAAAACCTTCTAGCCGGCACTaGAAACGATGCTGCCAAAAT +
Preference number: 4 (lower is better)
Translates to: TTSFSRSTEWRDQGRKEKPSSRH*KRCCQN
Trigger: ATTTTGGCAGCATCGTTTTCAGTGCCGGCTAGAAGG...TTTTTCTTTCCTTCCCTGGTCCCTCCATTCAGTAGACCTTGAGAAGCTAGTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGAGGTCCAACAACAGCTaGCTTCTCCCTTCCGGATCA +
Preference number: 4 (lower is better)
Translates to: KSPEILHWFSWLMESRMQRSNNS*LLPSGS
Trigger: TGATCCGGAAGGGAGAAGTCAGCTGTTGTTGGACCT...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGGAGCACAGGCGCTCATaGATCTGGGCTTTTTGGTAC +
Preference number: 4 (lower is better)
Translates to: KSPEILHWFSWLMESRMQEHRRS*IWAFWY
Trigger: GTACCAAAAAGCCCAGATTCATGAGCGCCTGTGCTC...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp CTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTTGTATCCAAGAGGAGTaGCAACCCCTAGGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: LINSTFYCSGCCFTLLLPCIQEE*QPLGWW
Trigger: CCACCAACCTAGGGGTTGTCACTCCTCTTGGATACA...AGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGAGCCATAGAATAGATTaGATTGATCACAAATCCCAT +
Preference number: 4 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWSHRID*IDHKSH
Trigger: ATGGGATTTGTGATCAATGCAATCTATTCTATGGCT...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp GAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTCCAGTTGGCACGCCTTaGAGGTGTACTCATCAAAAA +
Preference number: 4 (lower is better)
Translates to: ESRMQAFGRVSHSLFGKSPVGTP*RCTHQK
Trigger: TTTTTGATGAGTACACCTGCAAGGCGTGCCAACTGG...AGACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp ACTACTAGCTTCTCAAGGTCTACTGAATGGAGGGACCAGGGAAGGAAAGAAAAACTGGAGAGAGACCGATaGCAATTCTCTGAAGGTAGC +
Preference number: 4 (lower is better)
Translates to: TTSFSRSTEWRDQGRKEKLERDR*QFSEGS
Trigger: GCTACCTTCAGAGAATTGGCATCGGTCTCTCTCCAG...TTTTTCTTTCCTTCCCTGGTCCCTCCATTCAGTAGACCTTGAGAAGCTAGTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp CTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCGGAGCAAAGCACTTGACATCAGGAGACTaGAGCTTGATTGTAATCCCA +
Preference number: 4 (lower is better)
Translates to: LFTVRDVASHCCCLGAKHLTSGD*SLIVIP
Trigger: TGGGATTACAATCAAGCTCCAGTCTCCTGATGTCAA...GTGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp TGGAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTTCCTTGCAATACGGTTaGTCTTCGTTACAAGGGCTG +
Preference number: 4 (lower is better)
Translates to: WNPGCRLLEEYLTACLESSLQYG*SSLQGL
Trigger: CAGCCCTTGTAACGAAGACCAACCGTATTGCAAGGA...ACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGGGCTGCTGGATCTGCTaGCAGCGGATGATGACTTGC +
Preference number: 4 (lower is better)
Translates to: KVSARNSLFINTTLTTRLGCWIC*QRMMTC
Trigger: GCAAGTCATCATCCGCTGCCAGCAGATCCAGCAGCC...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp GAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTTCCTTCTTGTTGATATaGACAGACAGTCGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: ESRMQAFGRVSHSLFGKSSFLLI*TDSRCH
Trigger: GTGGCAGCGACTGTCTGTCCATATCAACAAGAAGGA...AGACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp TGTCATGAATTAGCACTATTGATCTCATGTCTCCACCGTGTGTGCCCTTGGCATGTGTGGGATCTGAATTaGTCCTTTCCAAGGTATGCA +
Preference number: 4 (lower is better)
Translates to: CHELALLISCLHRVCPWHVWDLN*SFPRYA
Trigger: TGCATACCTTGGAAAGGATCAATTCAGATCCCACAC...ATGCCAAGGGCACACACGGTGGAGACATGAGATCAATAGTGCTAATTCATGACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGCCGACAGCTTCTCGCTaGTACCCATCTGTCACGTCA +
Preference number: 4 (lower is better)
Translates to: KVSARNSLFINTTLTTRLPTASR*YPSVTS
Trigger: TGACGTGACAGATGGGTATCAGCGAGAAGCTGTCGG...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp AAGATAAAATCACTACTTATGGGCATAGCAAAAACACCTGCTATGCTGACTTTCCCCTGCTGGAAGACTTaGCCACTGGAGTGTCCCGAT +
Preference number: 4 (lower is better)
Translates to: KIKSLLMGIAKTPAMLTFPCWKT*PLECPD
Trigger: ATCGGGACACTCCAGTGGTCAAGTCTTCCAGCAGGG...GAAAGTCAGCATAGCAGGTGTTTTTGCTATGCCCATAAGTAGTGATTTTATCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR TCA 90 bp AAAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGAGCACAGGCGCTCATaGATCTGGGCTTTTTGGTAC +
Preference number: 4 (lower is better)
Translates to: KESRNLALVFLVNGIQDAEHRRS*IWAFWY
Trigger: GTACCAAAAAGCCCAGATTCATGAGCGCCTGTGCTC...TGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp CTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTGGCACTGAGGCTGACTaGGAAACACATGGTGATGAT +
Preference number: 4 (lower is better)
Translates to: LINSTFYCSGCCFTLLLPGTEAD*ETHGDD
Trigger: ATCATCACCATGTGTTTCTCAGTCAGCCTCAGTGCC...AGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp ATATCAGAGATTCTCCCAGGCCTCATACCCTCTTCAAAGCAAATTCTGAATTATTCCTCTTCCACAGGTTaGCTAGGCTGCTGGATCTGC +
Preference number: 4 (lower is better)
Translates to: ISEILPGLIPSSKQILNYSSSTG*LGCWIC
Trigger: GCAGATCCAGCAGCCTAGTCAACCTGTGGAAGAGGA...ATAATTCAGAATTTGCTTTGAAGAGGGTATGAGGCCTGGGAGAATCTCTGATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR TCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGTCCTCTTCCACAGGTTaGCTAGGCTGCTGGATCTGC +
Preference number: 4 (lower is better)
Translates to: KVSARNSLFINTTLTTRLSSSTG*LGCWIC
Trigger: GCAGATCCAGCAGCCTAGTCAACCTGTGGAAGAGGA...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp ACTACTAGCTTCTCAAGGTCTACTGAATGGAGGGACCAGGGAAGGAAAGAAAAACACTTTCTCCATAGTTaGCTTCTGTGTGCACAGCTG +
Preference number: 4 (lower is better)
Translates to: TTSFSRSTEWRDQGRKEKHFLHS*LLCAQL
Trigger: CAGCTGTGCACACAGAAGGCAACTATGGAGAAAGTG...TTTTTCTTTCCTTCCCTGGTCCCTCCATTCAGTAGACCTTGAGAAGCTAGTAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp TCAAGGAAACTCAGTAAGAATAGGTACCCAAATAAATCGGGAAGTTTGTATCCTGGCAAACACCACAGCTaGAATGGGCTCAGGGTCACC +
Preference number: 4 (lower is better)
Translates to: SRKLSKNRYPNKSGSLYPGKHHS*NGLRVT
Trigger: GGTGACCCTGAGCCCATTGCAGCTGTGGTGTTTGCC...AGGATACAAACTTCCCGATTTATTTGGGTACCTATTCTTACTGAGTTTCCTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR GCA 90 bp TCAAGGAAACTCAGTAAGAATAGGTACCCAAATAAATCGGGAAGTTTGTATCCTCCTTCGGCACAAACATaGAACCCAGGGCCACTGTGG +
Preference number: 4 (lower is better)
Translates to: SRKLSKNRYPNKSGSLYPPSAQT*NPGPLW
Trigger: CCACAGTGGCCCTGGGTTGCATGTTTGTGCCGAAGG...AGGATACAAACTTCCCGATTTATTTGGGTACCTATTCTTACTGAGTTTCCTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR GCA 90 bp AAAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCATTGCCATCTCCTACGTaGATGCGCACCACTGTAGAG +
Preference number: 4 (lower is better)
Translates to: KESRNLALVFLVNGIQDALPSPT*MRTTVE
Trigger: CTCTACAGTGGTGCGCATGCACGTAGGAGATGGCAA...TGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGCAGAGGCTGGATCTCTaGGAAGGTCGTCATGGTCGT +
Preference number: 4 (lower is better)
Translates to: KVSARNSLFINTTLTTRLQRLDL*EGRHGR
Trigger: ACGACCATGACGACCTTCGCAGAGATCCAGCCTCTG...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp TCAAGGAAACTCAGTAAGAATAGGTACCCAAATAAATCGGGAAGTTTGTATCCTACACCACAGCTGCAATaGGCTCAGGGTCACCCCATC +
Preference number: 4 (lower is better)
Translates to: SRKLSKNRYPNKSGSLYPTPQLQ*AQGHPI
Trigger: GATGGGGTGACCCTGAGCCCATTGCAGCTGTGGTGT...AGGATACAAACTTCCCGATTTATTTGGGTACCTATTCTTACTGAGTTTCCTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR CCA 90 bp ACTACTAGCTTCTCAAGGTCTACTGAATGGAGGGACCAGGGAAGGAAAGAAAAAGTGCTCTTCTCATTCTaGGCCCAAGTCACGGATTTT +
Preference number: 4 (lower is better)
Translates to: TTSFSRSTEWRDQGRKEKVLFSF*AQVTDF
Trigger: AAAATCCGTGACTTGGGCCCAGAATGAGAAGAGCAC...TTTTTCTTTCCTTCCCTGGTCCCTCCATTCAGTAGACCTTGAGAAGCTAGTAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp AGTTGCTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCGCAGCTGGATCTCTTTaGGGATCAGGTAGGAAGAGC +
Preference number: 4 (lower is better)
Translates to: SCLLTPLFTVRDVASHCCAAGSL*GSGRKS
Trigger: GCTCTTCCTACCTGATCCCCAAAGAGATCCAGCTGC...GCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAGCAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp ATATCAGAGATTCTCCCAGGCCTCATACCCTCTTCAAAGCAAATTCTGAATTATAGGTCGTCATGGTCGTaGGCAGCTGGATCTCTTTGG +
Preference number: 4 (lower is better)
Translates to: ISEILPGLIPSSKQILNYRSSWS*AAGSLW
Trigger: CCAAAGAGATCCAGCTGCCCACGACCATGACGACCT...ATAATTCAGAATTTGCTTTGAAGAGGGTATGAGGCCTGGGAGAATCTCTGATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR CCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGAGGTCGTCATGGTCGTaGGCAGCTGGATCTCTTTGG +
Preference number: 4 (lower is better)
Translates to: KVSARNSLFINTTLTTRLRSSWS*AAGSLW
Trigger: CCAAAGAGATCCAGCTGCCCACGACCATGACGACCT...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGATTTCCGACTTGTGCTaGGCCAGTCTCCTGTCTTTG +
Preference number: 4 (lower is better)
Translates to: KSPEILHWFSWLMESRMQISDLC*ASLLSL
Trigger: CAAAGACAGGAGACTGGCCCAGCACAAGTCGGAAAT...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155358.3
3UTR CAA 72 bp TCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTaGCTGCCTCGGAGCAAAGCACTTGGTATTGTAACT +
Preference number: 4 (lower is better)
Translates to: STFYCSGCCFTL*LPRSKALGIVT
Trigger: AGTTACAATACCAAGTGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp AGTTGCTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCGAAACCAAGGGTTTCTaGGGTTTGTTTCTGGCCGGA +
Preference number: 4 (lower is better)
Translates to: SCLLTPLFTVRDVASHCCETKGF*GLFLAG
Trigger: TCCGGCCAGAAACAAACCTCAGAAACCCTTGGTTTC...GCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAGCAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp CTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTGTTTGGGCTTTGCAATaGGGCAGAAGGTACACAAGT +
Preference number: 4 (lower is better)
Translates to: LINSTFYCSGCCFTLLLPVWALQ*GRRYTS
Trigger: ACTTGTGTACCTTCTGCCTCATTGCAAAGCCCAAAC...AGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp AAAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCACAAAGGCCAGCCATATaGTGCAGGTTGTGTACATGG +
Preference number: 4 (lower is better)
Translates to: KESRNLALVFLVNGIQDAQRPAI*CRLCTW
Trigger: CCATGTACACAACCTGCATCATATGGCTGGCCTTTG...TGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGCCGGTTTGGCTAGGATaGTGTACACCTTCGGCACAA +
Preference number: 4 (lower is better)
Translates to: KVSARNSLFINTTLTTRLPVWLG*CTPSAQ
Trigger: TTGTGCCGAAGGTGTACATCATCCTAGCCAAACCGG...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGTACTCCCTTTGGGGGTaGAACACTCTATTTCCGACT +
Preference number: 4 (lower is better)
Translates to: KSPEILHWFSWLMESRMQYSLWG*NTLFPT
Trigger: AGTCGGAAATAGAGTGTTTCACCCCCAAAGGGAGTA...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGTTGCCATCTCCTACGTaGATGCGCACCACTGTAGAG +
Preference number: 4 (lower is better)
Translates to: KVSARNSLFINTTLTTRLLPSPT*MRTTVE
Trigger: CTCTACAGTGGTGCGCATGCACGTAGGAGATGGCAA...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp AAGATAAAATCACTACTTATGGGCATAGCAAAAACACCTGCTATGCTGACTTTCCTAGGCTGCTGGATCTaGTGGCAGCGGATGATGACT +
Preference number: 4 (lower is better)
Translates to: KIKSLLMGIAKTPAMLTFLGCWI*WQRMMT
Trigger: AGTCATCATCCGCTGCCAGCAGATCCAGCAGCCTAG...GAAAGTCAGCATAGCAGGTGTTTTTGCTATGCCCATAAGTAGTGATTTTATCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR GCA 90 bp CATTTGGTACCTGAGGATAGCTGCAATGTGACTAATAAAAAGATGACCATAGATCAGAGGCTGGATCTCTaGGAAGGTCGTCATGGTCGT +
Preference number: 4 (lower is better)
Translates to: HLVPEDSCNVTNKKMTIDQRLDL*EGRHGR
Trigger: ACGACCATGACGACCTTCGCAGAGATCCAGCCTCTG...ATCTATGGTCATCTTTTTATTAGTCACATTGCAGCTATCCTCAGGTACCAAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR GCA 90 bp AGTTGCTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTCTATTTCCGACTTGTaGTGGGCCAGTCTCCTGTCT +
Preference number: 4 (lower is better)
Translates to: SCLLTPLFTVRDVASHCCSISDL*WASLLS
Trigger: AGACAGGAGACTGGCCCAGCACAAGTCGGAAATAGA...GCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAGCAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp GAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTTCTGAGGTTTGTTTCTaGCCGGAGCTTCAGATAATA +
Preference number: 4 (lower is better)
Translates to: ESRMQAFGRVSHSLFGKSSEVCF*PELQII
Trigger: TATTATCTGAAGCTCCGGCCAGAAACAAACCTCAGA...AGACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp CTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCGGAGCAAAGCACTATTTCATACCTTCCTaGAGAGTCTCCATTTTCATC +
Preference number: 4 (lower is better)
Translates to: LFTVRDVASHCCCLGAKHYFIPS*RVSIFI
Trigger: GATGAAAATGGAGACTCTCCAGGAAGGTATGAAATA...GTGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp ACTACTAGCTTCTCAAGGTCTACTGAATGGAGGGACCAGGGAAGGAAAGAAAAACCCCATCGAAGATACTaGACTGGGATCAAATCACAA +
Preference number: 4 (lower is better)
Translates to: TTSFSRSTEWRDQGRKEKPHRRY*TGIKSQ
Trigger: TTGTGATTTGATCCCAGTCCAGTATCTTCGATGGGG...TTTTTCTTTCCTTCCCTGGTCCCTCCATTCAGTAGACCTTGAGAAGCTAGTAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGTTGATGACTGCTGTCTaGTTGGGGTTCTCCTTCTTG +
Preference number: 4 (lower is better)
Translates to: KSPEILHWFSWLMESRMQLMTAV*LGFSFL
Trigger: CAAGAAGGAGAACCCCAACCAGACAGCAGTCATCAA...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp CATTTGGTACCTGAGGATAGCTGCAATGTGACTAATAAAAAGATGACCATAGATATGGTCGTGGGCAGCTaGATCTCTTTGGGGATCAGG +
Preference number: 4 (lower is better)
Translates to: HLVPEDSCNVTNKKMTIDMVVGS*ISLGIR
Trigger: CCTGATCCCCAAAGAGATCCAGCTGCCCACGACCAT...ATCTATGGTCATCTTTTTATTAGTCACATTGCAGCTATCCTCAGGTACCAAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR TCA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGAATCATCAAACCACTTaGCATCAGGAGACTGGAGCT +
Preference number: 4 (lower is better)
Translates to: KSPEILHWFSWLMESRMQNHQTT*HQETGA
Trigger: AGCTCCAGTCTCCTGATGTCAAGTGGTTTGATGATT...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp CATTTGGTACCTGAGGATAGCTGCAATGTGACTAATAAAAAGATGACCATAGATAGGTCCAACAACAGCTaGCTTCTCCCTTCCGGATCA +
Preference number: 4 (lower is better)
Translates to: HLVPEDSCNVTNKKMTIDRSNNS*LLPSGS
Trigger: TGATCCGGAAGGGAGAAGTCAGCTGTTGTTGGACCT...ATCTATGGTCATCTTTTTATTAGTCACATTGCAGCTATCCTCAGGTACCAAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR TCA 90 bp CATTTGGTACCTGAGGATAGCTGCAATGTGACTAATAAAAAGATGACCATAGATTGTATCCAAGAGGAGTaGCAACCCCTAGGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: HLVPEDSCNVTNKKMTIDCIQEE*QPLGWW
Trigger: CCACCAACCTAGGGGTTGTCACTCCTCTTGGATACA...ATCTATGGTCATCTTTTTATTAGTCACATTGCAGCTATCCTCAGGTACCAAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR TCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGGGCACTGAGGCTGACTaGGAAACACATGGTGATGAT +
Preference number: 4 (lower is better)
Translates to: KVSARNSLFINTTLTTRLGTEAD*ETHGDD
Trigger: ATCATCACCATGTGTTTCTCAGTCAGCCTCAGTGCC...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp AGTTGCTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCCACTTTCTCCATAGTTaGCTTCTGTGTGCACAGCTG +
Preference number: 4 (lower is better)
Translates to: SCLLTPLFTVRDVASHCCHFLHS*LLCAQL
Trigger: CAGCTGTGCACACAGAAGGCAACTATGGAGAAAGTG...GCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAGCAACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp ACTACTAGCTTCTCAAGGTCTACTGAATGGAGGGACCAGGGAAGGAAAGAAAAAAAGTCTTGTTGTACTTaGTGTTCTCCTGTGCAAACC +
Preference number: 4 (lower is better)
Translates to: TTSFSRSTEWRDQGRKEKKSCCT*CSPVQT
Trigger: GGTTTGCACAGGAGAACAGCAAGTACAACAAGACTT...TTTTTCTTTCCTTCCCTGGTCCCTCCATTCAGTAGACCTTGAGAAGCTAGTAGT
43% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp AGTTGCTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCCCAGTTGGCACGCCTTaGAGGTGTACTCATCAAAAA +
Preference number: 4 (lower is better)
Translates to: SCLLTPLFTVRDVASHCCPVGTP*RCTHQK
Trigger: TTTTTGATGAGTACACCTGCAAGGCGTGCCAACTGG...GCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAGCAACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp ACTACTAGCTTCTCAAGGTCTACTGAATGGAGGGACCAGGGAAGGAAAGAAAAAAATCTGTTTGGGCTTTaGAATGAGGCAGAAGGTACA +
Preference number: 4 (lower is better)
Translates to: TTSFSRSTEWRDQGRKEKNLFGL*NEAEGT
Trigger: TGTACCTTCTGCCTCATTGCAAAGCCCAAACAGATT...TTTTTCTTTCCTTCCCTGGTCCCTCCATTCAGTAGACCTTGAGAAGCTAGTAGT
43% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp ACTACTAGCTTCTCAAGGTCTACTGAATGGAGGGACCAGGGAAGGAAAGAAAAATCTGAGGTTTGTTTCTaGCCGGAGCTTCAGATAATA +
Preference number: 4 (lower is better)
Translates to: TTSFSRSTEWRDQGRKEKSEVCF*PELQII
Trigger: TATTATCTGAAGCTCCGGCCAGAAACAAACCTCAGA...TTTTTCTTTCCTTCCCTGGTCCCTCCATTCAGTAGACCTTGAGAAGCTAGTAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp TCAAGGAAACTCAGTAAGAATAGGTACCCAAATAAATCGGGAAGTTTGTATCCTGAAACCAAGGGTTTCTaGGGTTTGTTTCTGGCCGGA +
Preference number: 4 (lower is better)
Translates to: SRKLSKNRYPNKSGSLYPETKGF*GLFLAG
Trigger: TCCGGCCAGAAACAAACCTCAGAAACCCTTGGTTTC...AGGATACAAACTTCCCGATTTATTTGGGTACCTATTCTTACTGAGTTTCCTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR GCA 90 bp ACTACTAGCTTCTCAAGGTCTACTGAATGGAGGGACCAGGGAAGGAAAGAAAAAGAGTTAGAGAACTGTTaGAAGTCTTGTTGTACTTGC +
Preference number: 4 (lower is better)
Translates to: TTSFSRSTEWRDQGRKEKELENC*KSCCTC
Trigger: GCAAGTACAACAAGACTTGCAACAGTTCTCTAACTC...TTTTTCTTTCCTTCCCTGGTCCCTCCATTCAGTAGACCTTGAGAAGCTAGTAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGTCGAAGATACTGGACTaGGATCAAATCACAACCTGT +
Preference number: 4 (lower is better)
Translates to: KSPEILHWFSWLMESRMQSKILD*DQITTC
Trigger: ACAGGTTGTGATTTGATCCCAGTCCAGTATCTTCGA...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp AGTTGCTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCCCCCATCGAAGATACTaGACTGGGATCAAATCACAA +
Preference number: 4 (lower is better)
Translates to: SCLLTPLFTVRDVASHCCPHRRY*TGIKSQ
Trigger: TTGTGATTTGATCCCAGTCCAGTATCTTCGATGGGG...GCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAGCAACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp ACTACTAGCTTCTCAAGGTCTACTGAATGGAGGGACCAGGGAAGGAAAGAAAAAGACTTCTCGGATGCTTaGATAGTCATGCATTATATC +
Preference number: 4 (lower is better)
Translates to: TTSFSRSTEWRDQGRKEKDFSDA*IVMHYI
Trigger: GATATAATGCATGACTATCCAAGCATCCGAGAAGTC...TTTTTCTTTCCTTCCCTGGTCCCTCCATTCAGTAGACCTTGAGAAGCTAGTAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGTCCTTCTTGTTGATATaGACAGACAGTCGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: KVSARNSLFINTTLTTRLSFLLI*TDSRCH
Trigger: GTGGCAGCGACTGTCTGTCCATATCAACAAGAAGGA...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
3UTR CAA 72 bp GGCAAATGCCACCTTTTTGGTGGATACCAAGGGACATaGACATTTCAGAATGTTTACTTGGGTTTTCAGGTA +
Preference number: 4 (lower is better)
Translates to: GKCHLFGGYQGT*TFQNVYLGFQV
Trigger: TACCTGAAAACCCAAGTAAACATTCTGAAATGTCAATGTCCCTTGGTATCCACCAAAAAGGTGGCATTTGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR TCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGTGCTGCCAAAATTCTTaGAACCAAGGGTTTCTGAGG +
Preference number: 4 (lower is better)
Translates to: KVSARNSLFINTTLTTRLCCQNS*NQGFLR
Trigger: CCTCAGAAACCCTTGGTTTCAAGAATTTTGGCAGCA...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp AAGATAAAATCACTACTTATGGGCATAGCAAAAACACCTGCTATGCTGACTTTCGGTTCTCCTTCTTGTTaGTATGGACAGACAGTCGCT +
Preference number: 4 (lower is better)
Translates to: KIKSLLMGIAKTPAMLTFGSPSC*YGQTVA
Trigger: AGCGACTGTCTGTCCATATCAACAAGAAGGAGAACC...GAAAGTCAGCATAGCAGGTGTTTTTGCTATGCCCATAAGTAGTGATTTTATCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR CCA 90 bp AAGATAAAATCACTACTTATGGGCATAGCAAAAACACCTGCTATGCTGACTTTCTCCTTGCAATACGGTTaGTCTTCGTTACAAGGGCTG +
Preference number: 4 (lower is better)
Translates to: KIKSLLMGIAKTPAMLTFSLQYG*SSLQGL
Trigger: CAGCCCTTGTAACGAAGACCAACCGTATTGCAAGGA...GAAAGTCAGCATAGCAGGTGTTTTTGCTATGCCCATAAGTAGTGATTTTATCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR CCA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGGACTTCTCGGATGCTTaGATAGTCATGCATTATATC +
Preference number: 4 (lower is better)
Translates to: KSPEILHWFSWLMESRMQDFSDA*IVMHYI
Trigger: GATATAATGCATGACTATCCAAGCATCCGAGAAGTC...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CCA 90 bp CATTTGGTACCTGAGGATAGCTGCAATGTGACTAATAAAAAGATGACCATAGATGTGCTCTTCTCATTCTaGGCCCAAGTCACGGATTTT +
Preference number: 4 (lower is better)
Translates to: HLVPEDSCNVTNKKMTIDVLFSF*AQVTDF
Trigger: AAAATCCGTGACTTGGGCCCAGAATGAGAAGAGCAC...ATCTATGGTCATCTTTTTATTAGTCACATTGCAGCTATCCTCAGGTACCAAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR CCA 90 bp CATTTGGTACCTGAGGATAGCTGCAATGTGACTAATAAAAAGATGACCATAGATTTGATGACTGCTGTCTaGTTGGGGTTCTCCTTCTTG +
Preference number: 4 (lower is better)
Translates to: HLVPEDSCNVTNKKMTIDLMTAV*LGFSFL
Trigger: CAAGAAGGAGAACCCCAACCAGACAGCAGTCATCAA...ATCTATGGTCATCTTTTTATTAGTCACATTGCAGCTATCCTCAGGTACCAAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR CCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGTCACGGATTTTCCATTaGAGCTGCTCATTGTTGCTC +
Preference number: 4 (lower is better)
Translates to: KVSARNSLFINTTLTTRLSRIFH*SCSLLL
Trigger: GAGCAACAATGAGCAGCTCCAATGGAAAATCCGTGA...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155358.3
CDS-3UTR TCA 90 bp TCAAGGAAACTCAGTAAGAATAGGTACCCAAATAAATCGGGAAGTTTGTATCCTGTGTGGGATCTGAATTaGTCCTTTCCAAGGTATGCA +
Preference number: 4 (lower is better)
Translates to: SRKLSKNRYPNKSGSLYPVWDLN*SFPRYA
Trigger: TGCATACCTTGGAAAGGATCAATTCAGATCCCACAC...AGGATACAAACTTCCCGATTTATTTGGGTACCTATTCTTACTGAGTTTCCTTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR TCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGGAACATTTCTGGTCTTaGACGCATAGAATGTGCAAC +
Preference number: 4 (lower is better)
Translates to: KVSARNSLFINTTLTTRLEHFWS*THRMCN
Trigger: GTTGCACATTCTATGCGTTCAAGACCAGAAATGTTC...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGATCAATTGGCTTCATTaGATCACAGAGGCCTGCATA +
Preference number: 4 (lower is better)
Translates to: KVSARNSLFINTTLTTRLINWLH*ITEACI
Trigger: TATGCAGGCCTCTGTGATGCAATGAAGCCAATTGAT...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp ATATCAGAGATTCTCCCAGGCCTCATACCCTCTTCAAAGCAAATTCTGAATTATAATCTGTTTGGGCTTTaGAATGAGGCAGAAGGTACA +
Preference number: 4 (lower is better)
Translates to: ISEILPGLIPSSKQILNYNLFGL*NEAEGT
Trigger: TGTACCTTCTGCCTCATTGCAAAGCCCAAACAGATT...ATAATTCAGAATTTGCTTTGAAGAGGGTATGAGGCCTGGGAGAATCTCTGATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR TCA 90 bp AAGATAAAATCACTACTTATGGGCATAGCAAAAACACCTGCTATGCTGACTTTCGAACATTTCTGGTCTTaGACGCATAGAATGTGCAAC +
Preference number: 4 (lower is better)
Translates to: KIKSLLMGIAKTPAMLTFEHFWS*THRMCN
Trigger: GTTGCACATTCTATGCGTTCAAGACCAGAAATGTTC...GAAAGTCAGCATAGCAGGTGTTTTTGCTATGCCCATAAGTAGTGATTTTATCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR GCA 90 bp CATTTGGTACCTGAGGATAGCTGCAATGTGACTAATAAAAAGATGACCATAGATATCAATTGGCTTCATTaGATCACAGAGGCCTGCATA +
Preference number: 4 (lower is better)
Translates to: HLVPEDSCNVTNKKMTIDINWLH*ITEACI
Trigger: TATGCAGGCCTCTGTGATGCAATGAAGCCAATTGAT...ATCTATGGTCATCTTTTTATTAGTCACATTGCAGCTATCCTCAGGTACCAAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR TCA 90 bp CATTTGGTACCTGAGGATAGCTGCAATGTGACTAATAAAAAGATGACCATAGATAGGTTGTGTACATGGTaGAAGCAATATATTTGGCCT +
Preference number: 4 (lower is better)
Translates to: HLVPEDSCNVTNKKMTIDRLCTW*KQYIWP
Trigger: AGGCCAAATATATTGCTTTCACCATGTACACAACCT...ATCTATGGTCATCTTTTTATTAGTCACATTGCAGCTATCCTCAGGTACCAAATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR GCA 90 bp AAGATAAAATCACTACTTATGGGCATAGCAAAAACACCTGCTATGCTGACTTTCGAGTTAGAGAACTGTTaGAAGTCTTGTTGTACTTGC +
Preference number: 4 (lower is better)
Translates to: KIKSLLMGIAKTPAMLTFELENC*KSCCTC
Trigger: GCAAGTACAACAAGACTTGCAACAGTTCTCTAACTC...GAAAGTCAGCATAGCAGGTGTTTTTGCTATGCCCATAAGTAGTGATTTTATCTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR GCA 90 bp AAAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAAGCCATAGAATAGATTaGATTGATCACAAATCCCAT +
Preference number: 4 (lower is better)
Translates to: KESRNLALVFLVNGIQDASHRID*IDHKSH
Trigger: ATGGGATTTGTGATCAATGCAATCTATTCTATGGCT...TGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR GCA 90 bp CATTTGGTACCTGAGGATAGCTGCAATGTGACTAATAAAAAGATGACCATAGATAGTAGACTTCTCGGATaGTTGGATAGTCATGCATTA +
Preference number: 4 (lower is better)
Translates to: HLVPEDSCNVTNKKMTIDSRLLG*LDSHAL
Trigger: TAATGCATGACTATCCAAGCATCCGAGAAGTCTACT...ATCTATGGTCATCTTTTTATTAGTCACATTGCAGCTATCCTCAGGTACCAAATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR CAA 72 bp TATTCCAACTGTTTATCACTGGGTATCAGGAACAGATaGTTATCAAGGAAACTCAGTAAGAATAGGTACCCA +
Preference number: 4 (lower is better)
Translates to: YSNCLSLGIRNR*LSRKLSKNRYP
Trigger: TGGGTACCTATTCTTACTGAGTTTCCTTGATAACAATCTGTTCCTGATACCCAGTGATAAACAGTTGGAATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR CAA 72 bp ATATCAGGTTCTCAAATAAAGAAACAAGGAAGCTCATaGCGTATCTTACTATTTGAGCTTGCAACACTAACG +
Preference number: 4 (lower is better)
Translates to: ISGSQIKKQGSS*RILLFELATLT
Trigger: CGTTAGTGTTGCAAGCTCAAATAGTAAGATACGCAATGAGCTTCCTTGTTTCTTTATTTGAGAACCTGATAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
3UTR CAA 72 bp CTCAGTAAGAATAGGTACCCAAATAAATCGGGAAGTTaGTATCCTAGCCCTAAATTAAATGTTCAGTTCTCT +
Preference number: 4 (lower is better)
Translates to: LSKNRYPNKSGS*YPSPKLNVQFS
Trigger: AGAGAACTGAACATTTAATTTAGGGCTAGGATACAAACTTCCCGATTTATTTGGGTACCTATTCTTACTGAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS GCA 90 bp GGGGCCGGCGTCTGGTGGCTCTGGGCCGCCTGTCGCTGTGCATCCTaGGCTACCAGCACCAGCTGCACCGGGGCCAGAGCCACCACCTGC +
Preference number: 5 (lower is better)
Translates to: GAGVWWLWAACRCAS*ATSTSCTGARATTC
Trigger: GCAGGTGGTGGCTCTGGCCCCGGTGCAGCTGGTGCTGGTAGCGCAGGATGCACAGCGACAGGCGGCCCAGAGCCACCAGACGCCGGCCCC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 90 bp CGAGTGCAGCGACGGCGCGTCGTCGTCTGTGCGGCCCGCCGAGCCTaGCAGGTGGCTCAGCGTACTGATGGGCGATGGCGAGCGCGGCCT +
Preference number: 5 (lower is better)
Translates to: RVQRRRVVVCAARRA*QVAQRTDGRWRARP
Trigger: AGGCCGCGCTCGCCATCGCCCATCAGTACGCTGAGCCACCTGGCAGGCTCGGCGGGCCGCACAGACGACGACGCGCCGTCGCTGCACTCG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 90 bp ATGAGCGAGCCCTGGGATGAGCTGCTGCGTGCAGCGGTCTCCGAGTaGAGCGACGGCGCGTCGTCGTCTGTGCGGCCCGCCGAGCCTGCC +
Preference number: 5 (lower is better)
Translates to: MSEPWDELLRAAVSE*SDGASSSVRPAEPA
Trigger: GGCAGGCTCGGCGGGCCGCACAGACGACGACGCGCCGTCGCTGCACTCGGAGACCGCTGCACGCAGCAGCTCATCCCAGGGCTCGCTCAT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 90 bp TCCTGCGCTACCAGCACCAGCTGCACCGGGGCCAGAGCCACCACCTaGCCCTGCACCCTGCCCGCGGCTCTCTGTGCTCTTGGGGAAGGG +
Preference number: 5 (lower is better)
Translates to: SCATSTSCTGARATT*PCTLPAALCALGEG
Trigger: CCCTTCCCCAAGAGCACAGAGAGCCGCGGGCAGGGTGCAGGGGCAGGTGGTGGCTCTGGCCCCGGTGCAGCTGGTGCTGGTAGCGCAGGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 90 bp TGGCGAGCGCGGCCTGGCAGCCGCTGGGAAGCGCTCCTCTGCCTCTaGGACATCATAAAGCGCCTTGGGGCCGGCGTCTGGTGGCTCTGG +
Preference number: 5 (lower is better)
Translates to: WRARPGSRWEALLCL*DIIKRLGAGVWWLW
Trigger: CCAGAGCCACCAGACGCCGGCCCCAAGGCGCTTTATGATGTCGCAGAGGCAGAGGAGCGCTTCCCAGCGGCTGCCAGGCCGCGCTCGCCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS TCA 90 bp GCTCCTGCGGGCGTCTCTTGGGCAGGTGATGGCCCTGTCGCCGGCTaGGCTCCTCCGGTCACCTCGATGGCCGGCAGAGGCTGGATCTCT +
Preference number: 5 (lower is better)
Translates to: APAGVSWAGDGPVAG*APPVTSMAGRGWIS
Trigger: AGAGATCCAGCCTCTGCCGGCCATCGAGGTGACCGGAGGAGCTCAGCCGGCGACAGGGCCATCACCTGCCCAAGAGACGCCCGCAGGAGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS TCA 90 bp GCGCGTCACCACGCTGCTAATCTGCTCCATGAGCGAGCCCTGGGATaGGCTGCTGCGTGCAGCGGTCTCCGAGTGCAGCGACGGCGCGTC +
Preference number: 5 (lower is better)
Translates to: ARHHAANLLHERALG*AAACSGLRVQRRRV
Trigger: GACGCGCCGTCGCTGCACTCGGAGACCGCTGCACGCAGCAGCTCATCCCAGGGCTCGCTCATGGAGCAGATTAGCAGCGTGGTGACGCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 90 bp CCGCTGGGAAGCGCTCCTCTGCCTCTGCGACATCATAAAGCGCCTTaGGGCCGGCGTCTGGTGGCTCTGGGCCGCCTGTCGCTGTGCATC +
Preference number: 5 (lower is better)
Translates to: PLGSAPLPLRHHKAP*GRRLVALGRLSLCI
Trigger: GATGCACAGCGACAGGCGGCCCAGAGCCACCAGACGCCGGCCCCAAGGCGCTTTATGATGTCGCAGAGGCAGAGGAGCGCTTCCCAGCGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 90 bp CTCTGCGACATCATAAAGCGCCTTGGGGCCGGCGTCTGGTGGCTCTaGGCCGCCTGTCGCTGTGCATCCTGCGCTACCAGCACCAGCTGC +
Preference number: 5 (lower is better)
Translates to: LCDIIKRLGAGVWWL*AACRCASCATSTSC
Trigger: GCAGCTGGTGCTGGTAGCGCAGGATGCACAGCGACAGGCGGCCCAGAGCCACCAGACGCCGGCCCCAAGGCGCTTTATGATGTCGCAGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 90 bp CTCCTCTGCCTCTGCGACATCATAAAGCGCCTTGGGGCCGGCGTCTaGTGGCTCTGGGCCGCCTGTCGCTGTGCATCCTGCGCTACCAGC +
Preference number: 5 (lower is better)
Translates to: LLCLCDIIKRLGAGV*WLWAACRCASCATS
Trigger: GCTGGTAGCGCAGGATGCACAGCGACAGGCGGCCCAGAGCCACCAGACGCCGGCCCCAAGGCGCTTTATGATGTCGCAGAGGCAGAGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 90 bp CAGGTGATGGCCCTGTCGCCGGCTGAGCTCCTCCGGTCACCTCGATaGCCGGCAGAGGCTGGATCTCTGCGAAGGTCGTCATGGTCGTGG +
Preference number: 5 (lower is better)
Translates to: QVMALSPAELLRSPR*PAEAGSLRRSSWSW
Trigger: CCACGACCATGACGACCTTCGCAGAGATCCAGCCTCTGCCGGCCATCGAGGTGACCGGAGGAGCTCAGCCGGCGACAGGGCCATCACCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 90 bp GTGAAGCGCGTCACCACGCTGCTAATCTGCTCCATGAGCGAGCCCTaGGATGAGCTGCTGCGTGCAGCGGTCTCCGAGTGCAGCGACGGC +
Preference number: 5 (lower is better)
Translates to: VKRVTTLLICSMSEP*DELLRAAVSECSDG
Trigger: GCCGTCGCTGCACTCGGAGACCGCTGCACGCAGCAGCTCATCCCAGGGCTCGCTCATGGAGCAGATTAGCAGCGTGGTGACGCGCTTCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 90 bp GGGAGAGGATGGGATGCAGAGGGCCGATTCGGAGACTGGAGAGTTTaGGGTGGTGCTCCCCGAGTCCACCGAGTCCCTGAAGGGCGATGG +
Preference number: 5 (lower is better)
Translates to: GRGWDAEGRFGDWRV*GGAPRVHRVPEGRW
Trigger: CCATCGCCCTTCAGGGACTCGGTGGACTCGGGGAGCACCACCCCAAACTCTCCAGTCTCCGAATCGGCCCTCTGCATCCCATCCTCTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 90 bp AGCTCGGTGATGTTGGCGGTGAAGCGCGTCACCACGCTGCTAATCTaGTCCATGAGCGAGCCCTGGGATGAGCTGCTGCGTGCAGCGGTC +
Preference number: 5 (lower is better)
Translates to: SSVMLAVKRVTTLLI*SMSEPWDELLRAAV
Trigger: GACCGCTGCACGCAGCAGCTCATCCCAGGGCTCGCTCATGGAGCAGATTAGCAGCGTGGTGACGCGCTTCACCGCCAACATCACCGAGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 90 bp CTGAGCTCCTCCGGTCACCTCGATGGCCGGCAGAGGCTGGATCTCTaGGAAGGTCGTCATGGTCGTGGGCAGCTGGATCTCTTTGGGGAT +
Preference number: 5 (lower is better)
Translates to: LSSSGHLDGRQRLDL*EGRHGRGQLDLFGD
Trigger: ATCCCCAAAGAGATCCAGCTGCCCACGACCATGACGACCTTCGCAGAGATCCAGCCTCTGCCGGCCATCGAGGTGACCGGAGGAGCTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 90 bp TCACCTCGATGGCCGGCAGAGGCTGGATCTCTGCGAAGGTCGTCATaGTCGTGGGCAGCTGGATCTCTTTGGGGATCAGGTAGGAAGAGC +
Preference number: 5 (lower is better)
Translates to: SPRWPAEAGSLRRSS*SWAAGSLWGSGRKS
Trigger: GCTCTTCCTACCTGATCCCCAAAGAGATCCAGCTGCCCACGACCATGACGACCTTCGCAGAGATCCAGCCTCTGCCGGCCATCGAGGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 90 bp GTCATATTTGGGAGAGGATGGGATGCAGAGGGCCGATTCGGAGACTaGAGAGTTTGGGGTGGTGCTCCCCGAGTCCACCGAGTCCCTGAA +
Preference number: 5 (lower is better)
Translates to: VIFGRGWDAEGRFGD*RVWGGAPRVHRVPE
Trigger: TTCAGGGACTCGGTGGACTCGGGGAGCACCACCCCAAACTCTCCAGTCTCCGAATCGGCCCTCTGCATCCCATCCTCTCCCAAATATGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 90 bp GGGTTCTCCTTCTTGTTGATATGGACAGACAGTCGCTGCCACAGGTaGTGCCCCCGGGTGCTCTTCTCATTCTGGGCCCAAGTCACGGAT +
Preference number: 5 (lower is better)
Translates to: GFSFLLIWTDSRCHR*CPRVLFSFWAQVTD
Trigger: ATCCGTGACTTGGGCCCAGAATGAGAAGAGCACCCGGGGGCAGCACCTGTGGCAGCGACTGTCTGTCCATATCAACAAGAAGGAGAACCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 90 bp GTCTGGTTGGGGTTCTCCTTCTTGTTGATATGGACAGACAGTCGCTaGCACAGGTGCTGCCCCCGGGTGCTCTTCTCATTCTGGGCCCAA +
Preference number: 5 (lower is better)
Translates to: VWLGFSFLLIWTDSR*HRCCPRVLFSFWAQ
Trigger: TTGGGCCCAGAATGAGAAGAGCACCCGGGGGCAGCACCTGTGGCAGCGACTGTCTGTCCATATCAACAAGAAGGAGAACCCCAACCAGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 90 bp GACAGTCGCTGCCACAGGTGCTGCCCCCGGGTGCTCTTCTCATTCTaGGCCCAAGTCACGGATTTTCCATTGGAGCTGCTCATTGTTGCT +
Preference number: 5 (lower is better)
Translates to: DSRCHRCCPRVLFSF*AQVTDFPLELLIVA
Trigger: AGCAACAATGAGCAGCTCCAATGGAAAATCCGTGACTTGGGCCCAGAATGAGAAGAGCACCCGGGGGCAGCACCTGTGGCAGCGACTGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000155358.3
CDS TCA 90 bp TGTACCTTAGGGTTTCCCCAGACGAGCCCCTCCTCTTCCACAGGTTaGCTAGGCTGCTGGATCTGCTGGCAGCGGATGATGACTTGCCAT +
Preference number: 5 (lower is better)
Translates to: CTLGFPQTSPSSSTG*LGCWICWQRMMTCH
Trigger: ATGGCAAGTCATCATCCGCTGCCAGCAGATCCAGCAGCCTAGTCAACCTGTGGAAGAGGAGGGGCTCGTCTGGGGAAACCCTAAGGTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155358.3
CDS GCA 90 bp CTGCTGGATCTGCTGGCAGCGGATGATGACTTGCCATCTCCTACGTaGATGCGCACCACTGTAGAGGTTGTGAAGGCGCTGCGCACATTT +
Preference number: 5 (lower is better)
Translates to: LLDLLAADDDLPSPT*MRTTVEVVKALRTF
Trigger: AAATGTGCGCAGCGCCTTCACAACCTCTACAGTGGTGCGCATGCACGTAGGAGATGGCAAGTCATCATCCGCTGCCAGCAGATCCAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 90 bp CACAGCTGCAATGGGCTCAGGGTCACCCCATCGAAGATACTGGACTaGGATCAAATCACAACCTGTCAAGTCGTCAGTGGGCCAGGACCC +
Preference number: 5 (lower is better)
Translates to: HSCNGLRVTPSKILD*DQITTCQVVSGPGP
Trigger: GGGTCCTGGCCCACTGACGACTTGACAGGTTGTGATTTGATCCCAGTCCAGTATCTTCGATGGGGTGACCCTGAGCCCATTGCAGCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 90 bp AGAGGGTGGCTAGCAGACCGAGGCAGGCAAACACCACAGCTGCAATaGGCTCAGGGTCACCCCATCGAAGATACTGGACTGGGATCAAAT +
Preference number: 5 (lower is better)
Translates to: RGWLADRGRQTPQLQ*AQGHPIEDTGLGSN
Trigger: ATTTGATCCCAGTCCAGTATCTTCGATGGGGTGACCCTGAGCCCATTGCAGCTGTGGTGTTTGCCTGCCTCGGTCTGCTAGCCACCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 90 bp GGTTTGATGACTGCTGTCTGGTTGGGGTTCTCCTTCTTGTTGATATaGACAGACAGTCGCTGCCACAGGTGCTGCCCCCGGGTGCTCTTC +
Preference number: 5 (lower is better)
Translates to: GLMTAVWLGFSFLLI*TDSRCHRCCPRVLF
Trigger: GAAGAGCACCCGGGGGCAGCACCTGTGGCAGCGACTGTCTGTCCATATCAACAAGAAGGAGAACCCCAACCAGACAGCAGTCATCAAACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 90 bp ACCCTGCCCGCGGCTCTCTGTGCTCTTGGGGAAGGGTTTGATGACTaGTGTCTGGTTGGGGTTCTCCTTCTTGTTGATATGGACAGACAG +
Preference number: 5 (lower is better)
Translates to: TLPAALCALGEGFDD*CLVGVLLLVDMDRQ
Trigger: CTGTCTGTCCATATCAACAAGAAGGAGAACCCCAACCAGACAGCAGTCATCAAACCCTTCCCCAAGAGCACAGAGAGCCGCGGGCAGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 90 bp CCGCGGCTCTCTGTGCTCTTGGGGAAGGGTTTGATGACTGCTGTCTaGTTGGGGTTCTCCTTCTTGTTGATATGGACAGACAGTCGCTGC +
Preference number: 5 (lower is better)
Translates to: PRLSVLLGKGLMTAV*LGFSFLLIWTDSRC
Trigger: GCAGCGACTGTCTGTCCATATCAACAAGAAGGAGAACCCCAACCAGACAGCAGTCATCAAACCCTTCCCCAAGAGCACAGAGAGCCGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 90 bp TTCTCCTTCTTGTTGATATGGACAGACAGTCGCTGCCACAGGTGCTaGCCCCGGGTGCTCTTCTCATTCTGGGCCCAAGTCACGGATTTT +
Preference number: 5 (lower is better)
Translates to: FSFLLIWTDSRCHRC*PRVLFSFWAQVTDF
Trigger: AAAATCCGTGACTTGGGCCCAGAATGAGAAGAGCACCCGGGGGCAGCACCTGTGGCAGCGACTGTCTGTCCATATCAACAAGAAGGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 90 bp AACACCACAGCTGCAATGGGCTCAGGGTCACCCCATCGAAGATACTaGACTGGGATCAAATCACAACCTGTCAAGTCGTCAGTGGGCCAG +
Preference number: 5 (lower is better)
Translates to: NTTAAMGSGSPHRRY*TGIKSQPVKSSVGQ
Trigger: CTGGCCCACTGACGACTTGACAGGTTGTGATTTGATCCCAGTCCAGTATCTTCGATGGGGTGACCCTGAGCCCATTGCAGCTGTGGTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS TCA 90 bp TCAGGAGACTGGAGCTTGATTGTAATCCCACCGACAGCTTCTCGCTaGTACCCATCTGTCACGTCATACCTGTCAGCCCAGCCATCACTG +
Preference number: 5 (lower is better)
Translates to: SGDWSLIVIPPTASR*YPSVTSYLSAQPSL
Trigger: CAGTGATGGCTGGGCTGACAGGTATGACGTGACAGATGGGTATCAGCGAGAAGCTGTCGGTGGGATTACAATCAAGCTCCAGTCTCCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 90 bp CCGCCCATCAATTGGCTTCATTGCATCACAGAGGCCTGCATAGCCTaGACACAGGGACATCTGCATGTTGTGGAGCCCATAAGCCATAGA +
Preference number: 5 (lower is better)
Translates to: PPINWLHCITEACIA*TQGHLHVVEPISHR
Trigger: TCTATGGCTTATGGGCTCCACAACATGCAGATGTCCCTGTGTCCAGGCTATGCAGGCCTCTGTGATGCAATGAAGCCAATTGATGGGCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGATGACTGCTGTCTGGTaGGGGTTCTCCTTCTTGTTG +
Preference number: 5 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWMTAVW*GFSFLL
Trigger: CAACAAGAAGGAGAACCCCAACCAGACAGCAGTCAT...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp TGTCATGAATTAGCACTATTGATCTCATGTCTCCACCGTGTGTGCCCTTGGCATCGGAGACTGGAGAGTTaGGGGTGGTGCTCCCCGAGT +
Preference number: 5 (lower is better)
Translates to: CHELALLISCLHRVCPWHRRLES*GWCSPS
Trigger: ACTCGGGGAGCACCACCCCAAACTCTCCAGTCTCCG...ATGCCAAGGGCACACACGGTGGAGACATGAGATCAATAGTGCTAATTCATGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGGGGCCAGGACCCCAGTaGGCACGCCTTGCAGGTGTA +
Preference number: 5 (lower is better)
Translates to: KSPEILHWFSWLMESRMQGPGPQ*ARLAGV
Trigger: TACACCTGCAAGGCGTGCCAACTGGGGTCCTGGCCC...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp CTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTGGGCCAGGACCCCAGTaGGCACGCCTTGCAGGTGTA +
Preference number: 5 (lower is better)
Translates to: LINSTFYCSGCCFTLLLPGPGPQ*ARLAGV
Trigger: TACACCTGCAAGGCGTGCCAACTGGGGTCCTGGCCC...AGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGATCCTTGCAATACGGTaGGTCTTCGTTACAAGGGCT +
Preference number: 5 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWILAIR*VFVTRA
Trigger: AGCCCTTGTAACGAAGACCAACCGTATTGCAAGGAT...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGTTGGCCTCGTTAAAGTaGGCTGGAACATTTCTGGTC +
Preference number: 5 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWLASLK*AGTFLV
Trigger: GACCAGAAATGTTCCAGCCAACTTTAACGAGGCCAA...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp CTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCGGAGCAAAGCACCTCCTCTTCCACAGGTaGACTAGGCTGCTGGATCTG +
Preference number: 5 (lower is better)
Translates to: LFTVRDVASHCCCLGAKHLLFHR*TRLLDL
Trigger: CAGATCCAGCAGCCTAGTCAACCTGTGGAAGAGGAG...GTGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 90 bp CAAAAGTTTCCGCCCATCAATTGGCTTCATTGCATCACAGAGGCCTaGATAGCCTGGACACAGGGACATCTGCATGTTGTGGAGCCCATA +
Preference number: 5 (lower is better)
Translates to: QKFPPINWLHCITEA*IAWTQGHLHVVEPI
Trigger: TATGGGCTCCACAACATGCAGATGTCCCTGTGTCCAGGCTATGCAGGCCTCTGTGATGCAATGAAGCCAATTGATGGGCGGAAACTTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 90 bp AACCTGTCAAGTCGTCAGTGGGCCAGGACCCCAGTTGGCACGCCTTaGAGGTGTACTCATCAAAAACATACTCATTCTCCTTACAAGGTG +
Preference number: 5 (lower is better)
Translates to: NLSSRQWARTPVGTP*RCTHQKHTHSPYKV
Trigger: CACCTTGTAAGGAGAATGAGTATGTTTTTGATGAGTACACCTGCAAGGCGTGCCAACTGGGGTCCTGGCCCACTGACGACTTGACAGGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp TGGAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTCCTCTTCCACAGGTaGACTAGGCTGCTGGATCTG +
Preference number: 5 (lower is better)
Translates to: WNPGCRLLEEYLTACLESLLFHR*TRLLDL
Trigger: CAGATCCAGCAGCCTAGTCAACCTGTGGAAGAGGAG...ACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 90 bp ACCGATGCCAATTCTCTGAAGGTAGCAGTAAATCTGTTTGGGCTTTaGAATGAGGCAGAAGGTACACAAGTAACCCAGGCAGATGCCAGC +
Preference number: 5 (lower is better)
Translates to: TDANSLKVAVNLFGL*NEAEGTQVTQADAS
Trigger: GCTGGCATCTGCCTGGGTTACTTGTGTACCTTCTGCCTCATTGCAAAGCCCAAACAGATTTACTGCTACCTTCAGAGAATTGGCATCGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp GAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTCCCAGTTGGCACGCCTaGCAGGTGTACTCATCAAAA +
Preference number: 5 (lower is better)
Translates to: ESRMQAFGRVSHSLFGKSPSWHA*QVYSSK
Trigger: TTTTGATGAGTACACCTGCAAGGCGTGCCAACTGGG...AGACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp TGTCATGAATTAGCACTATTGATCTCATGTCTCCACCGTGTGTGCCCTTGGCATGCCAGTCTCCTGTCTTaGTACCTTAGGGTTTCCCCA +
Preference number: 5 (lower is better)
Translates to: CHELALLISCLHRVCPWHASLLS*YLRVSP
Trigger: TGGGGAAACCCTAAGGTACAAAGACAGGAGACTGGC...ATGCCAAGGGCACACACGGTGGAGACATGAGATCAATAGTGCTAATTCATGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp ACTACTAGCTTCTCAAGGTCTACTGAATGGAGGGACCAGGGAAGGAAAGAAAAACACTCTATTTCCGACTaGTGCTGGGCCAGTCTCCTG +
Preference number: 5 (lower is better)
Translates to: TTSFSRSTEWRDQGRKEKHSISD*CWASLL
Trigger: CAGGAGACTGGCCCAGCACAAGTCGGAAATAGAGTG...TTTTTCTTTCCTTCCCTGGTCCCTCCATTCAGTAGACCTTGAGAAGCTAGTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp CTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCGGAGCAAAGCACTTCCCCATACTCCCTTaGGGGGTGAAACACTCTATT +
Preference number: 5 (lower is better)
Translates to: LFTVRDVASHCCCLGAKHFPILP*GVKHSI
Trigger: AATAGAGTGTTTCACCCCCAAAGGGAGTATGGGGAA...GTGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000155358.3
CDS TCA 90 bp TGCCAATTCTCTGAAGGTAGCAGTAAATCTGTTTGGGCTTTGCAATaGGGCAGAAGGTACACAAGTAACCCAGGCAGATGCCAGCAAGGA +
Preference number: 5 (lower is better)
Translates to: CQFSEGSSKSVWALQ*GRRYTSNPGRCQQG
Trigger: TCCTTGCTGGCATCTGCCTGGGTTACTTGTGTACCTTCTGCCTCATTGCAAAGCCCAAACAGATTTACTGCTACCTTCAGAGAATTGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp TCTGTGAACACCGAGGTCTGCTGTTCAGGCCTATCCCAGGGATGTTTCCAGTGGATTTTTAATTCCCCATaGTCCCAACTTCCAACATTG +
Preference number: 5 (lower is better)
Translates to: SVNTEVCCSGLSQGCFQWIFNSP*SQLPTL
Trigger: CAATGTTGGAAGTTGGGACAATGGGGAATTAAAAAT...CCACTGGAAACATCCCTGGGATAGGCCTGAACAGCAGACCTCGGTGTTCACAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp TGTCATGAATTAGCACTATTGATCTCATGTCTCCACCGTGTGTGCCCTTGGCATTGCCAGCTAGAATCCTaGCAATACGGTTGGTCTTCG +
Preference number: 5 (lower is better)
Translates to: CHELALLISCLHRVCPWHCQLES*QYGWSS
Trigger: CGAAGACCAACCGTATTGCAAGGATTCTAGCTGGCA...ATGCCAAGGGCACACACGGTGGAGACATGAGATCAATAGTGCTAATTCATGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp TCAAGGAAACTCAGTAAGAATAGGTACCCAAATAAATCGGGAAGTTTGTATCCTCGGAGACTGGAGAGTTaGGGGTGGTGCTCCCCGAGT +
Preference number: 5 (lower is better)
Translates to: SRKLSKNRYPNKSGSLYPRRLES*GWCSPS
Trigger: ACTCGGGGAGCACCACCCCAAACTCTCCAGTCTCCG...AGGATACAAACTTCCCGATTTATTTGGGTACCTATTCTTACTGAGTTTCCTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR CAA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGTGGAGCTGCTCATTGTaGCTCTCCCACCATTCCCCA +
Preference number: 5 (lower is better)
Translates to: KSPEILHWFSWLMESRMQWSCSL*LSHHSP
Trigger: TGGGGAATGGTGGGAGAGCAACAATGAGCAGCTCCA...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155358.3
CDS TCA 90 bp AAACATACTCATTCTCCTTACAAGGTGTGCAGGTCCAACAACAGCTaGCTTCTCCCTTCCGGATCACCTTTATCTGTCCTTTCTCACACG +
Preference number: 5 (lower is better)
Translates to: KHTHSPYKVCRSNNS*LLPSGSPLSVLSHT
Trigger: CGTGTGAGAAAGGACAGATAAAGGTGATCCGGAAGGGAGAAGTCAGCTGTTGTTGGACCTGCACACCTTGTAAGGAGAATGAGTATGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 90 bp GATGCGTTCTCAGAGTTAGAGAACTGTTGCAAGTCTTGTTGTACTTaGTGTTCTCCTGTGCAAACCCTTCTAGCCGGCACTGAAAACGAT +
Preference number: 5 (lower is better)
Translates to: DAFSELENCCKSCCT*CSPVQTLLAGTEND
Trigger: ATCGTTTTCAGTGCCGGCTAGAAGGGTTTGCACAGGAGAACAGCAAGTACAACAAGACTTGCAACAGTTCTCTAACTCTGAGAACGCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGCCCAGTTGGCACGCCTaGCAGGTGTACTCATCAAAA +
Preference number: 5 (lower is better)
Translates to: KSPEILHWFSWLMESRMQPSWHA*QVYSSK
Trigger: TTTTGATGAGTACACCTGCAAGGCGTGCCAACTGGG...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp CTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCTCTTGGGGAAGGGTTaGATGACTGCTGTCTGGTTG +
Preference number: 5 (lower is better)
Translates to: LINSTFYCSGCCFTLLLPLLGKG*MTAVWL
Trigger: CAACCAGACAGCAGTCATCAAACCCTTCCCCAAGAG...AGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp AAAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCACGGCTCTCTGTGCTCTaGGGGAAGGGTTTGATGACT +
Preference number: 5 (lower is better)
Translates to: KESRNLALVFLVNGIQDARLSVL*GKGLMT
Trigger: AGTCATCAAACCCTTCCCCAAGAGCACAGAGAGCCG...TGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp GAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTATGAGAGTGTCATATTaGGGAGAGGATGGGATGCAG +
Preference number: 5 (lower is better)
Translates to: ESRMQAFGRVSHSLFGKSMRVSY*GEDGMQ
Trigger: CTGCATCCCATCCTCTCCCAAATATGACACTCTCAT...AGACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp CTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCATTGGAGCTGCTCATaGTTGCTCTCCCACCATTCC +
Preference number: 5 (lower is better)
Translates to: LINSTFYCSGCCFTLLLPHWSCS*LLSHHS
Trigger: GGAATGGTGGGAGAGCAACAATGAGCAGCTCCAATG...AGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp TGGAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTGTCACGGATTTTCCATaGGAGCTGCTCATTGTTGCT +
Preference number: 5 (lower is better)
Translates to: WNPGCRLLEEYLTACLESVTDFP*ELLIVA
Trigger: AGCAACAATGAGCAGCTCCAATGGAAAATCCGTGAC...ACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp TGGAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCAAGTCTTGTTGTACTaGCTGTTCTCCTGTGCAAAC +
Preference number: 5 (lower is better)
Translates to: WNPGCRLLEEYLTACLESQVLLY*LFSCAN
Trigger: GTTTGCACAGGAGAACAGCAAGTACAACAAGACTTG...ACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp GAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTCTGTTGCAAGTCTTGTaGTACTTGCTGTTCTCCTGT +
Preference number: 5 (lower is better)
Translates to: ESRMQAFGRVSHSLFGKSLLQVL*YLLFSC
Trigger: ACAGGAGAACAGCAAGTACAACAAGACTTGCAACAG...AGACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp ACTACTAGCTTCTCAAGGTCTACTGAATGGAGGGACCAGGGAAGGAAAGAAAAACATCAATTGGCTTCATaGCATCACAGAGGCCTGCAT +
Preference number: 5 (lower is better)
Translates to: TTSFSRSTEWRDQGRKEKHQLAS*HHRGLH
Trigger: ATGCAGGCCTCTGTGATGCAATGAAGCCAATTGATG...TTTTTCTTTCCTTCCCTGGTCCCTCCATTCAGTAGACCTTGAGAAGCTAGTAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp CTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTCGGAGCAAAGCACAGACTTCTCGGATGCTaGGATAGTCATGCATTATAT +
Preference number: 5 (lower is better)
Translates to: LFTVRDVASHCCCLGAKHRLLGC*DSHALY
Trigger: ATATAATGCATGACTATCCAAGCATCCGAGAAGTCT...GTGCTTTGCTCCGAGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp GAATCCAGGATGCAGGCTTTTGGAAGAGTATCTCACAGCCTGTTTGGAAAGTCTTCCCATTTTGGAATCTaGAACATGATGCGTTCTCAG +
Preference number: 5 (lower is better)
Translates to: ESRMQAFGRVSHSLFGKSSHFGI*NMMRSQ
Trigger: CTGAGAACGCATCATGTTCAAGATTCCAAAATGGGA...AGACTTTCCAAACAGGCTGTGAGATACTCTTCCAAAAGCCTGCATCCTGGATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGGTTTCCGCCCATCAATaGGCTTCATTGCATCACAGA +
Preference number: 5 (lower is better)
Translates to: KSPEILHWFSWLMESRMQVSAHQ*ASLHHR
Trigger: TCTGTGATGCAATGAAGCCAATTGATGGGCGGAAAC...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp AAAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCATGCCAGCTAGAATCCTaGCAATACGGTTGGTCTTCG +
Preference number: 5 (lower is better)
Translates to: KESRNLALVFLVNGIQDACQLES*QYGWSS
Trigger: CGAAGACCAACCGTATTGCAAGGATTCTAGCTGGCA...TGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGGTGACAACCCCTAGGTaGGTGGTGTTACAAATCAAG +
Preference number: 5 (lower is better)
Translates to: KSPEILHWFSWLMESRMQVTTPR*VVLQIK
Trigger: CTTGATTTGTAACACCACCAACCTAGGGGTTGTCAC...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp AAAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAATGACTGCTGTCTGGTaGGGGTTCTCCTTCTTGTTG +
Preference number: 5 (lower is better)
Translates to: KESRNLALVFLVNGIQDAMTAVW*GFSFLL
Trigger: CAACAAGAAGGAGAACCCCAACCAGACAGCAGTCAT...TGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGGAACTGTTGCAAGTCTaGTTGTACTTGCTGTTCTCC +
Preference number: 5 (lower is better)
Translates to: KSPEILHWFSWLMESRMQELLQV*LYLLFS
Trigger: GGAGAACAGCAAGTACAACAAGACTTGCAACAGTTC...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp TGTCATGAATTAGCACTATTGATCTCATGTCTCCACCGTGTGTGCCCTTGGCATAGAGTTAGAGAACTGTaGCAAGTCTTGTTGTACTTG +
Preference number: 5 (lower is better)
Translates to: CHELALLISCLHRVCPWHRVREL*QVLLYL
Trigger: CAAGTACAACAAGACTTGCAACAGTTCTCTAACTCT...ATGCCAAGGGCACACACGGTGGAGACATGAGATCAATAGTGCTAATTCATGACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp AGTTGCTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCCATCAATTGGCTTCATaGCATCACAGAGGCCTGCAT +
Preference number: 5 (lower is better)
Translates to: SCLLTPLFTVRDVASHCCHQLAS*HHRGLH
Trigger: ATGCAGGCCTCTGTGATGCAATGAAGCCAATTGATG...GCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAGCAACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp AAAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCATTGGCCTCGTTAAAGTaGGCTGGAACATTTCTGGTC +
Preference number: 5 (lower is better)
Translates to: KESRNLALVFLVNGIQDALASLK*AGTFLV
Trigger: GACCAGAAATGTTCCAGCCAACTTTAACGAGGCCAA...TGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp AAAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAACATTTCTCTCCGGTTaGGCTAGGATGATGTACACC +
Preference number: 5 (lower is better)
Translates to: KESRNLALVFLVNGIQDATFLSG*ARMMYT
Trigger: GGTGTACATCATCCTAGCCAAACCGGAGAGAAATGT...TGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGTTGGGGTTCTCCTTCTaGTTGATATGGACAGACAGT +
Preference number: 5 (lower is better)
Translates to: KSPEILHWFSWLMESRMQLGFSF*LIWTDS
Trigger: ACTGTCTGTCCATATCAACAAGAAGGAGAACCCCAA...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp TCAAGGAAACTCAGTAAGAATAGGTACCCAAATAAATCGGGAAGTTTGTATCCTCTCTTGGGGAAGGGTTaGATGACTGCTGTCTGGTTG +
Preference number: 5 (lower is better)
Translates to: SRKLSKNRYPNKSGSLYPLLGKG*MTAVWL
Trigger: CAACCAGACAGCAGTCATCAAACCCTTCCCCAAGAG...AGGATACAAACTTCCCGATTTATTTGGGTACCTATTCTTACTGAGTTTCCTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS TCA 90 bp ATAATACCCAACTGTATACAGATGAGAATGAAAGCGATCACTAACTaGGCACAGGCGCTCATGAATCTGGGCTTTTTGGTACAGATCTTC +
Preference number: 5 (lower is better)
Translates to: IIPNCIQMRMKAITN*AQALMNLGFLVQIF
Trigger: GAAGATCTGTACCAAAAAGCCCAGATTCATGAGCGCCTGTGCTCAGTTAGTGATCGCTTTCATTCTCATCTGTATACAGTTGGGTATTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGTCCCATTTTGGAATCTaGAACATGATGCGTTCTCAG +
Preference number: 5 (lower is better)
Translates to: KSPEILHWFSWLMESRMQSHFGI*NMMRSQ
Trigger: CTGAGAACGCATCATGTTCAAGATTCCAAAATGGGA...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp ACTACTAGCTTCTCAAGGTCTACTGAATGGAGGGACCAGGGAAGGAAAGAAAAATACTTGAATAGAGTCTaGTCACTCAAATCCATGCTA +
Preference number: 5 (lower is better)
Translates to: TTSFSRSTEWRDQGRKEKYLNRV*SLKSML
Trigger: TAGCATGGATTTGAGTGACAAGACTCTATTCAAGTA...TTTTTCTTTCCTTCCCTGGTCCCTCCATTCAGTAGACCTTGAGAAGCTAGTAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp AGTTGCTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCATGCTGCCAAAATTCTaGAAACCAAGGGTTTCTGAG +
Preference number: 5 (lower is better)
Translates to: SCLLTPLFTVRDVASHCCMLPKF*KPRVSE
Trigger: CTCAGAAACCCTTGGTTTCAAGAATTTTGGCAGCAT...GCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAGCAACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp AAAGTCTCTGCTAGAAACTCTTTGTTCATTAACACAACACTCACTACCCGTTTGCTGTTGCAAGTCTTGTaGTACTTGCTGTTCTCCTGT +
Preference number: 5 (lower is better)
Translates to: KVSARNSLFINTTLTTRLLLQVL*YLLFSC
Trigger: ACAGGAGAACAGCAAGTACAACAAGACTTGCAACAG...CAAACGGGTAGTGAGTGTTGTGTTAATGAACAAAGAGTTTCTAGCAGAGACTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp TCAAGGAAACTCAGTAAGAATAGGTACCCAAATAAATCGGGAAGTTTGTATCCTATCCTTGCAATACGGTaGGTCTTCGTTACAAGGGCT +
Preference number: 5 (lower is better)
Translates to: SRKLSKNRYPNKSGSLYPILAIR*VFVTRA
Trigger: AGCCCTTGTAACGAAGACCAACCGTATTGCAAGGAT...AGGATACAAACTTCCCGATTTATTTGGGTACCTATTCTTACTGAGTTTCCTTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR CAA 90 bp CTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCTGCCTAGACTTCTCGGATGCTaGGATAGTCATGCATTATAT +
Preference number: 5 (lower is better)
Translates to: LINSTFYCSGCCFTLLLPRLLGC*DSHALY
Trigger: ATATAATGCATGACTATCCAAGCATCCGAGAAGTCT...AGGCAGCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp AAGATAAAATCACTACTTATGGGCATAGCAAAAACACCTGCTATGCTGACTTTCGTGACAACCCCTAGGTaGGTGGTGTTACAAATCAAG +
Preference number: 5 (lower is better)
Translates to: KIKSLLMGIAKTPAMLTFVTTPR*VVLQIK
Trigger: CTTGATTTGTAACACCACCAACCTAGGGGTTGTCAC...GAAAGTCAGCATAGCAGGTGTTTTTGCTATGCCCATAAGTAGTGATTTTATCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR CAA 90 bp TCAAGGAAACTCAGTAAGAATAGGTACCCAAATAAATCGGGAAGTTTGTATCCTACATTTCTCTCCGGTTaGGCTAGGATGATGTACACC +
Preference number: 5 (lower is better)
Translates to: SRKLSKNRYPNKSGSLYPTFLSG*ARMMYT
Trigger: GGTGTACATCATCCTAGCCAAACCGGAGAGAAATGT...AGGATACAAACTTCCCGATTTATTTGGGTACCTATTCTTACTGAGTTTCCTTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR CAA 90 bp CATTTGGTACCTGAGGATAGCTGCAATGTGACTAATAAAAAGATGACCATAGATATGAGAGTGTCATATTaGGGAGAGGATGGGATGCAG +
Preference number: 5 (lower is better)
Translates to: HLVPEDSCNVTNKKMTIDMRVSY*GEDGMQ
Trigger: CTGCATCCCATCCTCTCCCAAATATGACACTCTCAT...ATCTATGGTCATCTTTTTATTAGTCACATTGCAGCTATCCTCAGGTACCAAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS TCA 90 bp AGAATGTGCAACTCAAAATCAATAATCCATTGTATCCAAGAGGAGTaGCAACCCCTAGGTTGGTGGTGTTACAAATCAAGTAGACTTCTC +
Preference number: 5 (lower is better)
Translates to: RMCNSKSIIHCIQEE*QPLGWWCYKSSRLL
Trigger: GAGAAGTCTACTTGATTTGTAACACCACCAACCTAGGGGTTGTCACTCCTCTTGGATACAATGGATTATTGATTTTGAGTTGCACATTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp AAGAGTCCAGAAATCTTGCACTGGTTTTCTTGGTTAATGGAATCCAGGATGCAGTACTTGAATAGAGTCTaGTCACTCAAATCCATGCTA +
Preference number: 5 (lower is better)
Translates to: KSPEILHWFSWLMESRMQYLNRV*SLKSML
Trigger: TAGCATGGATTTGAGTGACAAGACTCTATTCAAGTA...CTGCATCCTGGATTCCATTAACCAAGAAAACCAGTGCAAGATTTCTGGACTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS-3UTR CAA 90 bp CATTTGGTACCTGAGGATAGCTGCAATGTGACTAATAAAAAGATGACCATAGATGAACTGTTGCAAGTCTaGTTGTACTTGCTGTTCTCC +
Preference number: 5 (lower is better)
Translates to: HLVPEDSCNVTNKKMTIDELLQV*LYLLFS
Trigger: GGAGAACAGCAAGTACAACAAGACTTGCAACAGTTC...ATCTATGGTCATCTTTTTATTAGTCACATTGCAGCTATCCTCAGGTACCAAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR CAA 90 bp TCAAGGAAACTCAGTAAGAATAGGTACCCAAATAAATCGGGAAGTTTGTATCCTTTGGGGTTCTCCTTCTaGTTGATATGGACAGACAGT +
Preference number: 5 (lower is better)
Translates to: SRKLSKNRYPNKSGSLYPLGFSF*LIWTDS
Trigger: ACTGTCTGTCCATATCAACAAGAAGGAGAACCCCAA...AGGATACAAACTTCCCGATTTATTTGGGTACCTATTCTTACTGAGTTTCCTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR CAA 90 bp CATTTGGTACCTGAGGATAGCTGCAATGTGACTAATAAAAAGATGACCATAGATATGCTGCCAAAATTCTaGAAACCAAGGGTTTCTGAG +
Preference number: 5 (lower is better)
Translates to: HLVPEDSCNVTNKKMTIDMLPKF*KPRVSE
Trigger: CTCAGAAACCCTTGGTTTCAAGAATTTTGGCAGCAT...ATCTATGGTCATCTTTTTATTAGTCACATTGCAGCTATCCTCAGGTACCAAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR CAA 90 bp ATATCAGAGATTCTCCCAGGCCTCATACCCTCTTCAAAGCAAATTCTGAATTATAGAGTTAGAGAACTGTaGCAAGTCTTGTTGTACTTG +
Preference number: 5 (lower is better)
Translates to: ISEILPGLIPSSKQILNYRVREL*QVLLYL
Trigger: CAAGTACAACAAGACTTGCAACAGTTCTCTAACTCT...ATAATTCAGAATTTGCTTTGAAGAGGGTATGAGGCCTGGGAGAATCTCTGATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125009.9
CDS-3UTR CAA 90 bp AGTTGCTTATTAACTCCACTTTTTACTGTTCGGGATGTTGCTTCACACTGTTGCATTTTTAATTCCCCATaGTCCCAACTTCCAACATTG +
Preference number: 5 (lower is better)
Translates to: SCLLTPLFTVRDVASHCCIFNSP*SQLPTL
Trigger: CAATGTTGGAAGTTGGGACAATGGGGAATTAAAAAT...GCAACAGTGTGAAGCAACATCCCGAACAGTAAAAAGTGGAGTTAATAAGCAACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 72 bp CGGTCTCCGAGTGCAGCGACGGCGCGTCGTCGTCTGTaGGGCCCGCCGAGCCTGCCAGGTGGCTCAGCGTAC +
Preference number: 6 (lower is better)
Translates to: RSPSAATARRRL*GPPSLPGGSAY
Trigger: GTACGCTGAGCCACCTGGCAGGCTCGGCGGGCCGCACAGACGACGACGCGCCGTCGCTGCACTCGGAGACCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 72 bp CCCTGGGATGAGCTGCTGCGTGCAGCGGTCTCCGAGTaGAGCGACGGCGCGTCGTCGTCTGTGCGGCCCGCC +
Preference number: 6 (lower is better)
Translates to: PWDELLRAAVSE*SDGASSSVRPA
Trigger: GGCGGGCCGCACAGACGACGACGCGCCGTCGCTGCACTCGGAGACCGCTGCACGCAGCAGCTCATCCCAGGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 72 bp CGACGGCGCGTCGTCGTCTGTGCGGCCCGCCGAGCCTaGCAGGTGGCTCAGCGTACTGATGGGCGATGGCGA +
Preference number: 6 (lower is better)
Translates to: RRRVVVCAARRA*QVAQRTDGRWR
Trigger: TCGCCATCGCCCATCAGTACGCTGAGCCACCTGGCAGGCTCGGCGGGCCGCACAGACGACGACGCGCCGTCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 72 bp GTCTGGTGGCTCTGGGCCGCCTGTCGCTGTGCATCCTaGGCTACCAGCACCAGCTGCACCGGGGCCAGAGCC +
Preference number: 6 (lower is better)
Translates to: VWWLWAACRCAS*ATSTSCTGARA
Trigger: GGCTCTGGCCCCGGTGCAGCTGGTGCTGGTAGCGCAGGATGCACAGCGACAGGCGGCCCAGAGCCACCAGAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 72 bp CGGCCTGGCAGCCGCTGGGAAGCGCTCCTCTGCCTCTaGGACATCATAAAGCGCCTTGGGGCCGGCGTCTGG +
Preference number: 6 (lower is better)
Translates to: RPGSRWEALLCL*DIIKRLGAGVW
Trigger: CCAGACGCCGGCCCCAAGGCGCTTTATGATGTCGCAGAGGCAGAGGAGCGCTTCCCAGCGGCTGCCAGGCCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 72 bp AGCGCTCCTCTGCCTCTGCGACATCATAAAGCGCCTTaGGGCCGGCGTCTGGTGGCTCTGGGCCGCCTGTCG +
Preference number: 6 (lower is better)
Translates to: SAPLPLRHHKAP*GRRLVALGRLS
Trigger: CGACAGGCGGCCCAGAGCCACCAGACGCCGGCCCCAAGGCGCTTTATGATGTCGCAGAGGCAGAGGAGCGCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 72 bp GCCCTGTCGCCGGCTGAGCTCCTCCGGTCACCTCGATaGCCGGCAGAGGCTGGATCTCTGCGAAGGTCGTCA +
Preference number: 6 (lower is better)
Translates to: ALSPAELLRSPR*PAEAGSLRRSS
Trigger: TGACGACCTTCGCAGAGATCCAGCCTCTGCCGGCCATCGAGGTGACCGGAGGAGCTCAGCCGGCGACAGGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 72 bp ATCATAAAGCGCCTTGGGGCCGGCGTCTGGTGGCTCTaGGCCGCCTGTCGCTGTGCATCCTGCGCTACCAGC +
Preference number: 6 (lower is better)
Translates to: IIKRLGAGVWWL*AACRCASCATS
Trigger: GCTGGTAGCGCAGGATGCACAGCGACAGGCGGCCCAGAGCCACCAGACGCCGGCCCCAAGGCGCTTTATGAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 72 bp CTCTGCGACATCATAAAGCGCCTTGGGGCCGGCGTCTaGTGGCTCTGGGCCGCCTGTCGCTGTGCATCCTGC +
Preference number: 6 (lower is better)
Translates to: LCDIIKRLGAGV*WLWAACRCASC
Trigger: GCAGGATGCACAGCGACAGGCGGCCCAGAGCCACCAGACGCCGGCCCCAAGGCGCTTTATGATGTCGCAGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CAA 90 bp GTACCAGGGGGCCCCGGCGCAGCCGCGGTGGACAACATCATGGAGTaGAGCTCGGTGATGTTGGCGGTGAAGCGCGTCACCACGCTGCTA +
Preference number: 6 (lower is better)
Translates to: VPGGPGAAAVDNIME*SSVMLAVKRVTTLL
Trigger: TAGCAGCGTGGTGACGCGCTTCACCGCCAACATCACCGAGCTCAACTCCATGATGTTGTCCACCGCGGCTGCGCCGGGGCCCCCTGGTAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS TCA 72 bp CACGCTGCTAATCTGCTCCATGAGCGAGCCCTGGGATaGGCTGCTGCGTGCAGCGGTCTCCGAGTGCAGCGA +
Preference number: 6 (lower is better)
Translates to: HAANLLHERALG*AAACSGLRVQR
Trigger: TCGCTGCACTCGGAGACCGCTGCACGCAGCAGCTCATCCCAGGGCTCGCTCATGGAGCAGATTAGCAGCGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 72 bp TCCGGTCACCTCGATGGCCGGCAGAGGCTGGATCTCTaGGAAGGTCGTCATGGTCGTGGGCAGCTGGATCTC +
Preference number: 6 (lower is better)
Translates to: SGHLDGRQRLDL*EGRHGRGQLDL
Trigger: GAGATCCAGCTGCCCACGACCATGACGACCTTCGCAGAGATCCAGCCTCTGCCGGCCATCGAGGTGACCGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 72 bp GTCACCACGCTGCTAATCTGCTCCATGAGCGAGCCCTaGGATGAGCTGCTGCGTGCAGCGGTCTCCGAGTGC +
Preference number: 6 (lower is better)
Translates to: VTTLLICSMSEP*DELLRAAVSEC
Trigger: GCACTCGGAGACCGCTGCACGCAGCAGCTCATCCCAGGGCTCGCTCATGGAGCAGATTAGCAGCGTGGTGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 72 bp GGGAGAGGATGGGATGCAGAGGGCCGATTCGGAGACTaGAGAGTTTGGGGTGGTGCTCCCCGAGTCCACCGA +
Preference number: 6 (lower is better)
Translates to: GRGWDAEGRFGD*RVWGGAPRVHR
Trigger: TCGGTGGACTCGGGGAGCACCACCCCAAACTCTCCAGTCTCCGAATCGGCCCTCTGCATCCCATCCTCTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 72 bp TGGGATGCAGAGGGCCGATTCGGAGACTGGAGAGTTTaGGGTGGTGCTCCCCGAGTCCACCGAGTCCCTGAA +
Preference number: 6 (lower is better)
Translates to: WDAEGRFGDWRV*GGAPRVHRVPE
Trigger: TTCAGGGACTCGGTGGACTCGGGGAGCACCACCCCAAACTCTCCAGTCTCCGAATCGGCCCTCTGCATCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CAA 90 bp GGCGCAGCCGCGGTGGACAACATCATGGAGTTGAGCTCGGTGATGTaGGCGGTGAAGCGCGTCACCACGCTGCTAATCTGCTCCATGAGC +
Preference number: 6 (lower is better)
Translates to: GAAAVDNIMELSSVM*AVKRVTTLLICSMS
Trigger: GCTCATGGAGCAGATTAGCAGCGTGGTGACGCGCTTCACCGCCAACATCACCGAGCTCAACTCCATGATGTTGTCCACCGCGGCTGCGCC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS TCA 72 bp GGGTTTCCCCAGACGAGCCCCTCCTCTTCCACAGGTTaGCTAGGCTGCTGGATCTGCTGGCAGCGGATGATG +
Preference number: 6 (lower is better)
Translates to: GFPQTSPSSSTG*LGCWICWQRMM
Trigger: CATCATCCGCTGCCAGCAGATCCAGCAGCCTAGTCAACCTGTGGAAGAGGAGGGGCTCGTCTGGGGAAACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 72 bp GGACAGACAGTCGCTGCCACAGGTGCTGCCCCCGGGTaGTCTTCTCATTCTGGGCCCAAGTCACGGATTTTC +
Preference number: 6 (lower is better)
Translates to: GQTVAATGAAPG*SSHSGPKSRIF
Trigger: GAAAATCCGTGACTTGGGCCCAGAATGAGAAGAGCACCCGGGGGCAGCACCTGTGGCAGCGACTGTCTGTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 72 bp ATGTTGGCGGTGAAGCGCGTCACCACGCTGCTAATCTaGTCCATGAGCGAGCCCTGGGATGAGCTGCTGCGT +
Preference number: 6 (lower is better)
Translates to: MLAVKRVTTLLI*SMSEPWDELLR
Trigger: ACGCAGCAGCTCATCCCAGGGCTCGCTCATGGAGCAGATTAGCAGCGTGGTGACGCGCTTCACCGCCAACAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 72 bp TGCCACAGGTGCTGCCCCCGGGTGCTCTTCTCATTCTaGGCCCAAGTCACGGATTTTCCATTGGAGCTGCTC +
Preference number: 6 (lower is better)
Translates to: CHRCCPRVLFSF*AQVTDFPLELL
Trigger: GAGCAGCTCCAATGGAAAATCCGTGACTTGGGCCCAGAATGAGAAGAGCACCCGGGGGCAGCACCTGTGGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000155358.3
CDS CAA 90 bp GGGAAGGGTTTGATGACTGCTGTCTGGTTGGGGTTCTCCTTCTTGTaGATATGGACAGACAGTCGCTGCCACAGGTGCTGCCCCCGGGTG +
Preference number: 6 (lower is better)
Translates to: GKGLMTAVWLGFSFL*IWTDSRCHRCCPRV
Trigger: CACCCGGGGGCAGCACCTGTGGCAGCGACTGTCTGTCCATATCAACAAGAAGGAGAACCCCAACCAGACAGCAGTCATCAAACCCTTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 72 bp CTGCTGGCAGCGGATGATGACTTGCCATCTCCTACGTaGATGCGCACCACTGTAGAGGTTGTGAAGGCGCTG +
Preference number: 6 (lower is better)
Translates to: LLAADDDLPSPT*MRTTVEVVKAL
Trigger: CAGCGCCTTCACAACCTCTACAGTGGTGCGCATGCACGTAGGAGATGGCAAGTCATCATCCGCTGCCAGCAG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 72 bp TTGTTGATATGGACAGACAGTCGCTGCCACAGGTGCTaGCCCCGGGTGCTCTTCTCATTCTGGGCCCAAGTC +
Preference number: 6 (lower is better)
Translates to: LLIWTDSRCHRC*PRVLFSFWAQV
Trigger: GACTTGGGCCCAGAATGAGAAGAGCACCCGGGGGCAGCACCTGTGGCAGCGACTGTCTGTCCATATCAACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 72 bp GGACTGGGATCAAATCACAACCTGTCAAGTCGTCAGTaGGCCAGGACCCCAGTTGGCACGCCTTGCAGGTGT +
Preference number: 6 (lower is better)
Translates to: GLGSNHNLSSRQ*ARTPVGTPCRC
Trigger: ACACCTGCAAGGCGTGCCAACTGGGGTCCTGGCCCACTGACGACTTGACAGGTTGTGATTTGATCCCAGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 72 bp TGCCACAGGTGCTGCCCCCGGGTGCTCTTCTCATTCTaGGCCCAAGTCACGGATTTTCCATTGGAGCTTAGG +
Preference number: 6 (lower is better)
Translates to: CHRCCPRVLFSF*AQVTDFPLELR
Trigger: CCTAAGCTCCAATGGAAAATCCGTGACTTGGGCCCAGAATGAGAAGAGCACCCGGGGGCAGCACCTGTGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
CDS CAA 72 bp GCGGTGGACAACATCATGGAGTTGAGCTCGGTGATGTaGGCGGTGAAGCGCGTCACCACGCTGCTAATCTGC +
Preference number: 6 (lower is better)
Translates to: AVDNIMELSSVM*AVKRVTTLLIC
Trigger: GCAGATTAGCAGCGTGGTGACGCGCTTCACCGCCAACATCACCGAGCTCAACTCCATGATGTTGTCCACCGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CAA 90 bp TTGTACCTTAGGGTTTCCCCAGACGAGCCCCTCCTCTTCCACAGGTaGACTAGGCTGCTGGATCTGCTGGCAGCGGATGATGACTTGCCA +
Preference number: 6 (lower is better)
Translates to: LYLRVSPDEPLLFHR*TRLLDLLAADDDLP
Trigger: TGGCAAGTCATCATCCGCTGCCAGCAGATCCAGCAGCCTAGTCAACCTGTGGAAGAGGAGGGGCTCGTCTGGGGAAACCCTAAGGTACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155358.3
CDS GCA 72 bp TTCTTGTTGATATGGACAGACAGTCGCTGCCACAGGTaGTGCCCCCGGGTGCTCTTCTCATTCTGGGCCCAA +
Preference number: 6 (lower is better)
Translates to: FLLIWTDSRCHR*CPRVLFSFWAQ
Trigger: TTGGGCCCAGAATGAGAAGAGCACCCGGGGGCAGCACCTGTGGCAGCGACTGTCTGTCCATATCAACAAGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CAA 72 bp ACTAGGCTGCTGGATCTGCTGGCAGCGGATGATGACTaGCCATCTCCTACGTGCATGCGCACCACTGTAGAG +
Preference number: 6 (lower is better)
Translates to: TRLLDLLAADDD*PSPTCMRTTVE
Trigger: CTCTACAGTGGTGCGCATGCACGTAGGAGATGGCAAGTCATCATCCGCTGCCAGCAGATCCAGCAGCCTAGT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CAA 90 bp CACAGGTTGACTAGGCTGCTGGATCTGCTGGCAGCGGATGATGACTaGCCATCTCCTACGTGCATGCGCACCACTGTAGAGGTTGTGAAG +
Preference number: 6 (lower is better)
Translates to: HRLTRLLDLLAADDD*PSPTCMRTTVEVVK
Trigger: CTTCACAACCTCTACAGTGGTGCGCATGCACGTAGGAGATGGCAAGTCATCATCCGCTGCCAGCAGATCCAGCAGCCTAGTCAACCTGTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS TCA 72 bp AGGCGCTGCGCACATTTCTCTCCGGTTTGGCTAGGATaGTGTACACCTTCGGCACAAACATGCAACCCAGGG +
Preference number: 6 (lower is better)
Translates to: RRCAHFSPVWLG*CTPSAQTCNPG
Trigger: CCCTGGGTTGCATGTTTGTGCCGAAGGTGTACATCATCCTAGCCAAACCGGAGAGAAATGTGCGCAGCGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CAA 90 bp CGGCTCTCTGTGCTCTTGGGGAAGGGTTTGATGACTGCTGTCTGGTaGGGGTTCTCCTTCTTGTTGATATGGACAGACAGTCGCTGCCAC +
Preference number: 6 (lower is better)
Translates to: RLSVLLGKGLMTAVW*GFSFLLIWTDSRCH
Trigger: GTGGCAGCGACTGTCTGTCCATATCAACAAGAAGGAGAACCCCAACCAGACAGCAGTCATCAAACCCTTCCCCAAGAGCACAGAGAGCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 72 bp CCGCCCATCAATTGGCTTCATTGCATCACAGAGGCCTaGATAGCCTGGACACAGGGACATCTGCATGTTGTG +
Preference number: 6 (lower is better)
Translates to: PPINWLHCITEA*IAWTQGHLHVV
Trigger: CACAACATGCAGATGTCCCTGTGTCCAGGCTATGCAGGCCTCTGTGATGCAATGAAGCCAATTGATGGGCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CAA 72 bp GGGAGTCCAAAAGTTTCCGCCCATCAATTGGCTTCATaGCATCACAGAGGCCTGCATAGCCTGGACACAGGG +
Preference number: 6 (lower is better)
Translates to: GSPKVSAHQLAS*HHRGLHSLDTG
Trigger: CCCTGTGTCCAGGCTATGCAGGCCTCTGTGATGCAATGAAGCCAATTGATGGGCGGAAACTTTTGGACTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CAA 90 bp ACCACTGTAGAGGTTGTGAAGGCGCTGCGCACATTTCTCTCCGGTTaGGCTAGGATGATGTACACCTTCGGCACAAACATGCAACCCAGG +
Preference number: 6 (lower is better)
Translates to: TTVEVVKALRTFLSG*ARMMYTFGTNMQPR
Trigger: CCTGGGTTGCATGTTTGTGCCGAAGGTGTACATCATCCTAGCCAAACCGGAGAGAAATGTGCGCAGCGCCTTCACAACCTCTACAGTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS TCA 72 bp TGGAGCTTGATTGTAATCCCACCGACAGCTTCTCGCTaGTACCCATCTGTCACGTCATACCTGTCAGCCCAG +
Preference number: 6 (lower is better)
Translates to: WSLIVIPPTASR*YPSVTSYLSAQ
Trigger: CTGGGCTGACAGGTATGACGTGACAGATGGGTATCAGCGAGAAGCTGTCGGTGGGATTACAATCAAGCTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 72 bp AGTCGTCAGTGGGCCAGGACCCCAGTTGGCACGCCTTaGAGGTGTACTCATCAAAAACATACTCATTCTCCT +
Preference number: 6 (lower is better)
Translates to: SRQWARTPVGTP*RCTHQKHTHSP
Trigger: AGGAGAATGAGTATGTTTTTGATGAGTACACCTGCAAGGCGTGCCAACTGGGGTCCTGGCCCACTGACGACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 72 bp GCGGCTCTCTGTGCTCTTGGGGAAGGGTTTGATGACTaGTGTCTGGTTGGGGTTCTCCTTCTTGTTGATATG +
Preference number: 6 (lower is better)
Translates to: AALCALGEGFDD*CLVGVLLLVDM
Trigger: CATATCAACAAGAAGGAGAACCCCAACCAGACAGCAGTCATCAAACCCTTCCCCAAGAGCACAGAGAGCCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 72 bp AATGGGCTCAGGGTCACCCCATCGAAGATACTGGACTaGGATCAAATCACAACCTGTCAAGTCGTCAGTGGG +
Preference number: 6 (lower is better)
Translates to: NGLRVTPSKILD*DQITTCQVVSG
Trigger: CCCACTGACGACTTGACAGGTTGTGATTTGATCCCAGTCCAGTATCTTCGATGGGGTGACCCTGAGCCCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 72 bp GCTGCAATGGGCTCAGGGTCACCCCATCGAAGATACTaGACTGGGATCAAATCACAACCTGTCAAGTCGTCA +
Preference number: 6 (lower is better)
Translates to: AAMGSGSPHRRY*TGIKSQPVKSS
Trigger: TGACGACTTGACAGGTTGTGATTTGATCCCAGTCCAGTATCTTCGATGGGGTGACCCTGAGCCCATTGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CAA 72 bp TTGATGACTGCTGTCTGGTTGGGGTTCTCCTTCTTGTaGATATGGACAGACAGTCGCTGCCACAGGTGCTGC +
Preference number: 6 (lower is better)
Translates to: LMTAVWLGFSFL*IWTDSRCHRCC
Trigger: GCAGCACCTGTGGCAGCGACTGTCTGTCCATATCAACAAGAAGGAGAACCCCAACCAGACAGCAGTCATCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CAA 90 bp CAACCTGTCAAGTCGTCAGTGGGCCAGGACCCCAGTTGGCACGCCTaGCAGGTGTACTCATCAAAAACATACTCATTCTCCTTACAAGGT +
Preference number: 6 (lower is better)
Translates to: QPVKSSVGQDPSWHA*QVYSSKTYSFSLQG
Trigger: ACCTTGTAAGGAGAATGAGTATGTTTTTGATGAGTACACCTGCAAGGCGTGCCAACTGGGGTCCTGGCCCACTGACGACTTGACAGGTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 72 bp AATTGGCTTCATTGCATCACAGAGGCCTGCATAGCCTaGACACAGGGACATCTGCATGTTGTGGAGCCCATA +
Preference number: 6 (lower is better)
Translates to: NWLHCITEACIA*TQGHLHVVEPI
Trigger: TATGGGCTCCACAACATGCAGATGTCCCTGTGTCCAGGCTATGCAGGCCTCTGTGATGCAATGAAGCCAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CAA 90 bp TTTTCATCAGGGAGTCCAAAAGTTTCCGCCCATCAATTGGCTTCATaGCATCACAGAGGCCTGCATAGCCTGGACACAGGGACATCTGCA +
Preference number: 6 (lower is better)
Translates to: FSSGSPKVSAHQLAS*HHRGLHSLDTGTSA
Trigger: TGCAGATGTCCCTGTGTCCAGGCTATGCAGGCCTCTGTGATGCAATGAAGCCAATTGATGGGCGGAAACTTTTGGACTCCCTGATGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CAA 90 bp GATCAAATCACAACCTGTCAAGTCGTCAGTGGGCCAGGACCCCAGTaGGCACGCCTTGCAGGTGTACTCATCAAAAACATACTCATTCTC +
Preference number: 6 (lower is better)
Translates to: DQITTCQVVSGPGPQ*ARLAGVLIKNILIL
Trigger: GAGAATGAGTATGTTTTTGATGAGTACACCTGCAAGGCGTGCCAACTGGGGTCCTGGCCCACTGACGACTTGACAGGTTGTGATTTGATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 72 bp TCTGTGCTCTTGGGGAAGGGTTTGATGACTGCTGTCTaGTTGGGGTTCTCCTTCTTGTTGATATGGACAGAC +
Preference number: 6 (lower is better)
Translates to: SVLLGKGLMTAV*LGFSFLLIWTD
Trigger: GTCTGTCCATATCAACAAGAAGGAGAACCCCAACCAGACAGCAGTCATCAAACCCTTCCCCAAGAGCACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CAA 72 bp GTGCTCTTGGGGAAGGGTTTGATGACTGCTGTCTGGTaGGGGTTCTCCTTCTTGTTGATATGGACAGACAGT +
Preference number: 6 (lower is better)
Translates to: VLLGKGLMTAVW*GFSFLLIWTDS
Trigger: ACTGTCTGTCCATATCAACAAGAAGGAGAACCCCAACCAGACAGCAGTCATCAAACCCTTCCCCAAGAGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS TCA 72 bp CATTCTCCTTACAAGGTGTGCAGGTCCAACAACAGCTaGCTTCTCCCTTCCGGATCACCTTTATCTGTCCTT +
Preference number: 6 (lower is better)
Translates to: HSPYKVCRSNNS*LLPSGSPLSVL
Trigger: AAGGACAGATAAAGGTGATCCGGAAGGGAGAAGTCAGCTGTTGTTGGACCTGCACACCTTGTAAGGAGAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CAA 72 bp CTCAGAGTTAGAGAACTGTTGCAAGTCTTGTTGTACTaGCTGTTCTCCTGTGCAAACCCTTCTAGCCGGCAC +
Preference number: 6 (lower is better)
Translates to: LRVRELLQVLLY*LFSCANPSSRH
Trigger: GTGCCGGCTAGAAGGGTTTGCACAGGAGAACAGCAAGTACAACAAGACTTGCAACAGTTCTCTAACTCTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CAA 72 bp TTTTCATCAGGGAGTCCAAAAGTTTCCGCCCATCAATaGGCTTCATTGCATCACAGAGGCCTGCATAGCCTG +
Preference number: 6 (lower is better)
Translates to: FSSGSPKVSAHQ*ASLHHRGLHSL
Trigger: CAGGCTATGCAGGCCTCTGTGATGCAATGAAGCCAATTGATGGGCGGAAACTTTTGGACTCCCTGATGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS TCA 72 bp TCTGAAGGTAGCAGTAAATCTGTTTGGGCTTTGCAATaGGGCAGAAGGTACACAAGTAACCCAGGCAGATGC +
Preference number: 6 (lower is better)
Translates to: SEGSSKSVWALQ*GRRYTSNPGRC
Trigger: GCATCTGCCTGGGTTACTTGTGTACCTTCTGCCTCATTGCAAAGCCCAAACAGATTTACTGCTACCTTCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 72 bp TCAGAGTTAGAGAACTGTTGCAAGTCTTGTTGTACTTaGTGTTCTCCTGTGCAAACCCTTCTAGCCGGCACT +
Preference number: 6 (lower is better)
Translates to: SELENCCKSCCT*CSPVQTLLAGT
Trigger: AGTGCCGGCTAGAAGGGTTTGCACAGGAGAACAGCAAGTACAACAAGACTTGCAACAGTTCTCTAACTCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 72 bp GGTTGGTGGTGTTACAAATCAAGTAGACTTCTCGGATaGTTGGATAGTCATGCATTATATCCGGAGGCTCCA +
Preference number: 6 (lower is better)
Translates to: GWWCYKSSRLLG*LDSHALYPEAP
Trigger: TGGAGCCTCCGGATATAATGCATGACTATCCAAGCATCCGAGAAGTCTACTTGATTTGTAACACCACCAACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CAA 72 bp TGCGTTCTCAGAGTTAGAGAACTGTTGCAAGTCTTGTaGTACTTGCTGTTCTCCTGTGCAAACCCTTCTAGC +
Preference number: 6 (lower is better)
Translates to: CVLRVRELLQVL*YLLFSCANPSS
Trigger: GCTAGAAGGGTTTGCACAGGAGAACAGCAAGTACAACAAGACTTGCAACAGTTCTCTAACTCTGAGAACGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS GCA 72 bp AATTCTCTGAAGGTAGCAGTAAATCTGTTTGGGCTTTaGAATGAGGCAGAAGGTACACAAGTAACCCAGGCA +
Preference number: 6 (lower is better)
Translates to: NSLKVAVNLFGL*NEAEGTQVTQA
Trigger: TGCCTGGGTTACTTGTGTACCTTCTGCCTCATTGCAAAGCCCAAACAGATTTACTGCTACCTTCAGAGAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS CCA 72 bp GGTGGTGTTACAAATCAAGTAGACTTCTCGGATGCTTaGATAGTCATGCATTATATCCGGAGGCTCCATGAT +
Preference number: 6 (lower is better)
Translates to: GGVTNQVDFSDA*IVMHYIRRLHD
Trigger: ATCATGGAGCCTCCGGATATAATGCATGACTATCCAAGCATCCGAGAAGTCTACTTGATTTGTAACACCACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS TCA 72 bp AACTGTATACAGATGAGAATGAAAGCGATCACTAACTaGGCACAGGCGCTCATGAATCTGGGCTTTTTGGTA +
Preference number: 6 (lower is better)
Translates to: NCIQMRMKAITN*AQALMNLGFLV
Trigger: TACCAAAAAGCCCAGATTCATGAGCGCCTGTGCTCAGTTAGTGATCGCTTTCATTCTCATCTGTATACAGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS TCA 72 bp AACGATGCTGCCAAAATTCTTGAAACCAAGGGTTTCTaGGGTTTGTTTCTGGCCGGAGCTTCAGATAATAAT +
Preference number: 6 (lower is better)
Translates to: NDAAKILETKGF*GLFLAGASDNN
Trigger: ATTATTATCTGAAGCTCCGGCCAGAAACAAACCTCAGAAACCCTTGGTTTCAAGAATTTTGGCAGCATCGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3
CDS TCA 72 bp AACTCAAAATCAATAATCCATTGTATCCAAGAGGAGTaGCAACCCCTAGGTTGGTGGTGTTACAAATCAAGT +
Preference number: 6 (lower is better)
Translates to: NSKSIIHCIQEE*QPLGWWCYKSS
Trigger: ACTTGATTTGTAACACCACCAACCTAGGGGTTGTCACTCCTCTTGGATACAATGGATTATTGATTTTGAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107263.9
ENSMUST00000125009.9
ENSMUST00000155358.3