RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GRM2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023192

Ensembl transcript IDs: ENSMUST00000023959.13, ENSMUST00000200826.4, ENSMUST00000201681.2

Found 241 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGGGAGGCTGCTGAGAGCCCTGCCCTTGGGAGCAGAAGCGGAGGCTaGGCCCTGGCGCCCTCTACTGGTGAGCTCCAGATGACGCACATG +
Preference number: 1 (lower is better)
Translates to: WEAAESPALGSRSGG*ALAPSTGELQMTHM
Trigger: CATGTGCGTCATCTGGAGCTCACCAGTAGAGGGCGCCAGGGCTCAGCCTCCGCTTCTGCTCCCAAGGGCAGGGCTCTCAGCAGCCTCCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR CCA 90 bp GGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATaGAAGAGGGTCTACGCTGGGTTCGGGAGCAGCCATGTCAGGGCA +
Preference number: 1 (lower is better)
Translates to: GVGVIARLQPTSSWP*KRVYAGFGSSHVRA
Trigger: TGCCCTGACATGGCTGCTCCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
3UTR CCA 90 bp AGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTaGCCATGGAAGAGGGTCTACGCTGGGTTCGGGAGCAGCCATGTC +
Preference number: 1 (lower is better)
Translates to: RHGVGVIARLQPTSS*PWKRVYAGFGSSHV
Trigger: GACATGGCTGCTCCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
3UTR CCA 90 bp GTAGCTCCAGACCTAGGGGATCTGGTCGCCCTCCTCTGGCCTCTGTaGGCACTGCATGCATGTGGTGCAGAAGCCCTACATACACTCCTT +
Preference number: 1 (lower is better)
Translates to: VAPDLGDLVALLWPL*ALHACGAEALHTLL
Trigger: AAGGAGTGTATGTAGGGCTTCTGCACCACATGCATGCAGTGCCCACAGAGGCCAGAGGAGGGCGACCAGATCCCCTAGGTCTGGAGCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR CCA 90 bp CAACCAACTGTAGCTCCAGACCTAGGGGATCTGGTCGCCCTCCTCTaGCCTCTGTGGGCACTGCATGCATGTGGTGCAGAAGCCCTACAT +
Preference number: 1 (lower is better)
Translates to: QPTVAPDLGDLVALL*PLWALHACGAEALH
Trigger: ATGTAGGGCTTCTGCACCACATGCATGCAGTGCCCACAGAGGCCAGAGGAGGGCGACCAGATCCCCTAGGTCTGGAGCTACAGTTGGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR GCA 90 bp TCTGGTCGCCCTCCTCTGGCCTCTGTGGGCACTGCATGCATGTGGTaGAGAAGCCCTACATACACTCCTTTCATCCCAGTACTTGGGAGG +
Preference number: 1 (lower is better)
Translates to: SGRPPLASVGTACMW*RSPTYTPFIPVLGR
Trigger: CCTCCCAAGTACTGGGATGAAAGGAGTGTATGTAGGGCTTCTGCACCACATGCATGCAGTGCCCACAGAGGCCAGAGGAGGGCGACCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR GCA 90 bp TGGTTTTCTCACACAGGACTTTGTCCCTGCCTGTTACCGAAGCCCTaGCTGCAGCAGCCATATGCTTCCAGCTCACTGCACAGCGCCCTC +
Preference number: 1 (lower is better)
Translates to: WFSHTGLCPCLLPKP*LQQPYASSSLHSAL
Trigger: GAGGGCGCTGTGCAGTGAGCTGGAAGCATATGGCTGCTGCAGGCAGGGCTTCGGTAACAGGCAGGGACAAAGTCCTGTGTGAGAAAACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR CCA 90 bp TCCTTCAGAGTCTGGAAAGGACCCTTTTCTGATGACAGCCGCAGATaGCCTCGCCACAGGCATGTCTGCACCCCTTTCCTTGTGGGCTCC +
Preference number: 1 (lower is better)
Translates to: SFRVWKGPFSDDSRR*PRHRHVCTPFLVGS
Trigger: GGAGCCCACAAGGAAAGGGGTGCAGACATGCCTGTGGCGAGGCCATCTGCGGCTGTCATCAGAAAAGGGTCCTTTCCAGACTCTGAAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR CCA 90 bp TTCCCAGGCCTGGCAAACACGGGGCATAGCTACAAGGATAGTTACTaGCCAATGCAGAGACTCCCAGCTAAGGACTCTGACTTCTGGCCT +
Preference number: 1 (lower is better)
Translates to: FPGLANTGHSYKDSY*PMQRLPAKDSDFWP
Trigger: AGGCCAGAAGTCAGAGTCCTTAGCTGGGAGTCTCTGCATTGGCCAGTAACTATCCTTGTAGCTATGCCCCGTGTTTGCCAGGCCTGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
3UTR GCA 90 bp AAAATCAATGTCTCTGGCTGGTTTTCTCACACAGGACTTTGTCCCTaGCTGTTACCGAAGCCCTGCCTGCAGCAGCCATATGCTTCCAGC +
Preference number: 1 (lower is better)
Translates to: KINVSGWFSHTGLCP*LLPKPCLQQPYASS
Trigger: GCTGGAAGCATATGGCTGCTGCAGGCAGGGCTTCGGTAACAGGCAGGGACAAAGTCCTGTGTGAGAAAACCAGCCAGAGACATTGATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR CAA 90 bp GCACAGCGCCCTCTAGGCCTTGGGAGGCTGCTGAGAGCCCTGCCCTaGGGAGCAGAAGCGGAGGCTGAGCCCTGGCGCCCTCTACTGGTG +
Preference number: 2 (lower is better)
Translates to: AQRPLGLGRLLRALP*GAEAEAEPWRPLLV
Trigger: CACCAGTAGAGGGCGCCAGGGCTCAGCCTCCGCTTCTGCTCCCAAGGGCAGGGCTCTCAGCAGCCTCCCAAGGCCTAGAGGGCGCTGTGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR-3UTR GCA 90 bp GTTACCGAAGCCCTGCCTGCAGCAGCCATATGCTTCCAGCTCACTGCACAGCGCGACGCACATGGGAGATaGCCAGGGCATGGCAGGCAC +
Preference number: 2 (lower is better)
Translates to: VTEALPAAAICFQLTAQRDAHGR*PGHGRH
Trigger: GTGCCTGCCATGCCCTGGGCATCTCCCATGTGCGTC...GCGCTGTGCAGTGAGCTGGAAGCATATGGCTGCTGCAGGCAGGGCTTCGGTAAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR-3UTR CCA 90 bp GCTGGTTTTCTCACACAGGACTTTGTCCCTGCCTGTTACCGAAGCCCTGCCTGCCAGCCAACTTCCTCCTaGCCATGGAAGAGGGTCTAC +
Preference number: 2 (lower is better)
Translates to: AGFLTQDFVPACYRSPACQPTSS*PWKRVY
Trigger: GTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTG...GCAGGCAGGGCTTCGGTAACAGGCAGGGACAAAGTCCTGTGTGAGAAAACCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
3UTR-3UTR CCA 90 bp TGTTGGTTCCCTTTTGCCAAGCACTCACCCTGGCTCTGGCTTGTCCAAATTCCACTCCTCTGGCCTCTGTaGGCACTGCATGCATGTGGT +
Preference number: 2 (lower is better)
Translates to: CWFPFAKHSPWLWLVQIPLLWPL*ALHACG
Trigger: ACCACATGCATGCAGTGCCCACAGAGGCCAGAGGAG...TGGAATTTGGACAAGCCAGAGCCAGGGTGAGTGCTTGGCAAAAGGGAACCAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR-3UTR CCA 90 bp TGGGCACTGCATGCATGTGGTGCAGAAGCCCTACATACACTCCTTTCATCCCAGCTTTGGGGGCAGGCATaGGGTAGGTGTTATTGCAAG +
Preference number: 2 (lower is better)
Translates to: WALHACGAEALHTLLSSQLWGQA*GRCYCK
Trigger: CTTGCAATAACACCTACCCCATGCCTGCCCCCAAAG...CTGGGATGAAAGGAGTGTATGTAGGGCTTCTGCACCACATGCATGCAGTGCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
3UTR CAA 90 bp CTGATTGTTGGTTCCCTTTTGCCAAGCACTCACCCTGGCTCTGGCTaGTCCAAATTCCAGTCAGGCTGTCATGAAAAGCCCACAGTCGGT +
Preference number: 2 (lower is better)
Translates to: LIVGSLLPSTHPGSG*SKFQSGCHEKPTVG
Trigger: ACCGACTGTGGGCTTTTCATGACAGCCTGACTGGAATTTGGACAAGCCAGAGCCAGGGTGAGTGCTTGGCAAAAGGGAACCAACAATCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR-3UTR CCA 90 bp CTGATTGTTGGTTCCCTTTTGCCAAGCACTCACCCTGGCTCTGGCTTGTCCAAAAAGGACTCTGACTTCTaGCCTAAAGGGCTGGGGAAT +
Preference number: 2 (lower is better)
Translates to: LIVGSLLPSTHPGSGLSKKDSDF*PKGLGN
Trigger: ATTCCCCAGCCCTTTAGGCCAGAAGTCAGAGTCCTT...TTTGGACAAGCCAGAGCCAGGGTGAGTGCTTGGCAAAAGGGAACCAACAATCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
3UTR-3UTR CCA 90 bp TTCCTTGTGGGCTCCTTTCTGGCTACATATATTACCTGTGAACAGGTAACATTCCTGGTCGCCCTCCTCTaGCCTCTGTGGGCACTGCAT +
Preference number: 2 (lower is better)
Translates to: FLVGSFLATYITCEQVTFLVALL*PLWALH
Trigger: ATGCAGTGCCCACAGAGGCCAGAGGAGGGCGACCAG...GAATGTTACCTGTTCACAGGTAATATATGTAGCCAGAAAGGAGCCCACAAGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR-3UTR GCA 90 bp ATACAAAATAAACCACGGGACAAACTACTGGGTAAGGAGGGAGGGACTGGTCCCATAGTTACTGGCCAATaGAGAGACTCCCAGCTAAGG +
Preference number: 2 (lower is better)
Translates to: IQNKPRDKLLGKEGGTGPIVTGQ*RDSQLR
Trigger: CCTTAGCTGGGAGTCTCTGCATTGGCCAGTAACTAT...GGGACCAGTCCCTCCCTCCTTACCCAGTAGTTTGTCCCGTGGTTTATTTTGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
3UTR TCA 72 bp GCTGAGCCCTGGCGCCCTCTACTGGTGAGCTCCAGATaGCGCACATGGGAGATGCCCAGGGCATGGCAGGCA +
Preference number: 3 (lower is better)
Translates to: AEPWRPLLVSSR*RTWEMPRAWQA
Trigger: TGCCTGCCATGCCCTGGGCATCTCCCATGTGCGTCATCTGGAGCTCACCAGTAGAGGGCGCCAGGGCTCAGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR-3UTR CAA 90 bp TTCCAGCTCACTGCACAGCGCCCTCTAGGCCTTGGGAGGCTGCTGAGAGCCCTGACCTTTGCATGGGGGTaGGGCCTGTCGTCCTCAGCC +
Preference number: 3 (lower is better)
Translates to: FQLTAQRPLGLGRLLRALTFAWG*GLSSSA
Trigger: GGCTGAGGACGACAGGCCCAACCCCCATGCAAAGGT...CAGGGCTCTCAGCAGCCTCCCAAGGCCTAGAGGGCGCTGTGCAGTGAGCTGGAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
3UTR GCA 72 bp AGCCCTGCCTGCAGCAGCCATATGCTTCCAGCTCACTaGACAGCGCCCTCTAGGCCTTGGGAGGCTGCTGAG +
Preference number: 3 (lower is better)
Translates to: SPACSSHMLPAH*TAPSRPWEAAE
Trigger: CTCAGCAGCCTCCCAAGGCCTAGAGGGCGCTGTGCAGTGAGCTGGAAGCATATGGCTGCTGCAGGCAGGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR CCA 72 bp GCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTaGGTTCGGGAGCAGCCATGTCAGGGCAGGAGTGTG +
Preference number: 3 (lower is better)
Translates to: ANFLLAMEEGLR*VREQPCQGRSV
Trigger: CACACTCCTGCCCTGACATGGCTGCTCCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
3UTR GCA 72 bp GGGATCTGGTCGCCCTCCTCTGGCCTCTGTGGGCACTaGATGCATGTGGTGCAGAAGCCCTACATACACTCC +
Preference number: 3 (lower is better)
Translates to: GIWSPSSGLCGH*MHVVQKPYIHS
Trigger: GGAGTGTATGTAGGGCTTCTGCACCACATGCATGCAGTGCCCACAGAGGCCAGAGGAGGGCGACCAGATCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR GCA 72 bp CTGCCTGTTACCGAAGCCCTGCCTGCAGCAGCCATATaGTTCCAGCTCACTGCACAGCGCCCTCTAGGCCTT +
Preference number: 3 (lower is better)
Translates to: LPVTEALPAAAI*FQLTAQRPLGL
Trigger: AAGGCCTAGAGGGCGCTGTGCAGTGAGCTGGAAGCATATGGCTGCTGCAGGCAGGGCTTCGGTAACAGGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR CCA 72 bp GTAGCTCCAGACCTAGGGGATCTGGTCGCCCTCCTCTaGCCTCTGTGGGCACTGCATGCATGTGGTGCAGAA +
Preference number: 3 (lower is better)
Translates to: VAPDLGDLVALL*PLWALHACGAE
Trigger: TTCTGCACCACATGCATGCAGTGCCCACAGAGGCCAGAGGAGGGCGACCAGATCCCCTAGGTCTGGAGCTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR-3UTR CAA 90 bp GTTACCGAAGCCCTGCCTGCAGCAGCCATATGCTTCCAGCTCACTGCACAGCGCTCTGCACCCCTTTCCTaGTGGGCTCCTTTCTGGCTA +
Preference number: 3 (lower is better)
Translates to: VTEALPAAAICFQLTAQRSAPLS*WAPFWL
Trigger: TAGCCAGAAAGGAGCCCACAAGGAAAGGGGTGCAGA...GCGCTGTGCAGTGAGCTGGAAGCATATGGCTGCTGCAGGCAGGGCTTCGGTAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR GCA 72 bp TCTGGTCGCCCTCCTCTGGCCTCTGTGGGCACTGCATaGATGTGGTGCAGAAGCCCTACATACACTCCTTTC +
Preference number: 3 (lower is better)
Translates to: SGRPPLASVGTA*MWCRSPTYTPF
Trigger: GAAAGGAGTGTATGTAGGGCTTCTGCACCACATGCATGCAGTGCCCACAGAGGCCAGAGGAGGGCGACCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR CCA 72 bp GTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATaGAAGAGGGTCTACGCTGGGTTCGGGAGCAGCCAT +
Preference number: 3 (lower is better)
Translates to: VIARLQPTSSWP*KRVYAGFGSSH
Trigger: ATGGCTGCTCCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
3UTR CCA 72 bp GTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTaGCCATGGAAGAGGGTCTACGCTGGGTTCGGGAGC +
Preference number: 3 (lower is better)
Translates to: VGVIARLQPTSS*PWKRVYAGFGS
Trigger: GCTCCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
3UTR CCA 72 bp CGCCCTCCTCTGGCCTCTGTGGGCACTGCATGCATGTaGTGCAGAAGCCCTACATACACTCCTTTCATCCCA +
Preference number: 3 (lower is better)
Translates to: RPPLASVGTACM*CRSPTYTPFIP
Trigger: TGGGATGAAAGGAGTGTATGTAGGGCTTCTGCACCACATGCATGCAGTGCCCACAGAGGCCAGAGGAGGGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR CCA 72 bp GGGCATGGCAGGCACAGCCAGCAATCCTTCAGAGTCTaGAAAGGACCCTTTTCTGATGACAGCCGCAGATGG +
Preference number: 3 (lower is better)
Translates to: GHGRHSQQSFRV*KGPFSDDSRRW
Trigger: CCATCTGCGGCTGTCATCAGAAAAGGGTCCTTTCCAGACTCTGAAGGATTGCTGGCTGTGCCTGCCATGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR GCA 72 bp CCTCCTCTGGCCTCTGTGGGCACTGCATGCATGTGGTaGAGAAGCCCTACATACACTCCTTTCATCCCAGTA +
Preference number: 3 (lower is better)
Translates to: PPLASVGTACMW*RSPTYTPFIPV
Trigger: TACTGGGATGAAAGGAGTGTATGTAGGGCTTCTGCACCACATGCATGCAGTGCCCACAGAGGCCAGAGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR GCA 72 bp GTCTCTGGCTGGTTTTCTCACACAGGACTTTGTCCCTaGCTGTTACCGAAGCCCTGCCTGCAGCAGCCATAT +
Preference number: 3 (lower is better)
Translates to: VSGWFSHTGLCP*LLPKPCLQQPY
Trigger: ATATGGCTGCTGCAGGCAGGGCTTCGGTAACAGGCAGGGACAAAGTCCTGTGTGAGAAAACCAGCCAGAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR CCA 72 bp CAGTCGGTGTCCCACTTCCCACACCATATCGTAGGCTaGGTCTCTGAGGAAAACCGTCTCCTAGAAGAGTGG +
Preference number: 3 (lower is better)
Translates to: QSVSHFPHHIVG*VSEENRLLEEW
Trigger: CCACTCTTCTAGGAGACGGTTTTCCTCAGAGACCCAGCCTACGATATGGTGTGGGAAGTGGGACACCGACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR CCA 72 bp GGCCTCGCCACAGGCATGTCTGCACCCCTTTCCTTGTaGGCTCCTTTCTGGCTACATATATTACCTGTGAAC +
Preference number: 3 (lower is better)
Translates to: GLATGMSAPLSL*APFWLHILPVN
Trigger: GTTCACAGGTAATATATGTAGCCAGAAAGGAGCCCACAAGGAAAGGGGTGCAGACATGCCTGTGGCGAGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR CCA 72 bp CTGGCAAACACGGGGCATAGCTACAAGGATAGTTACTaGCCAATGCAGAGACTCCCAGCTAAGGACTCTGAC +
Preference number: 3 (lower is better)
Translates to: LANTGHSYKDSY*PMQRLPAKDSD
Trigger: GTCAGAGTCCTTAGCTGGGAGTCTCTGCATTGGCCAGTAACTATCCTTGTAGCTATGCCCCGTGTTTGCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
3UTR-3UTR CAA 90 bp TGTTGGTTCCCTTTTGCCAAGCACTCACCCTGGCTCTGGCTTGTCCAAATTCCAGAGCACAGCCCAGAGTaGACACACGTTAGCAAAATG +
Preference number: 3 (lower is better)
Translates to: CWFPFAKHSPWLWLVQIPEHSPE*THVSKM
Trigger: CATTTTGCTAACGTGTGTCAACTCTGGGCTGTGCTC...TGGAATTTGGACAAGCCAGAGCCAGGGTGAGTGCTTGGCAAAAGGGAACCAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR TCA 72 bp GTCCCACTTCCCACACCATATCGTAGGCTGGGTCTCTaGGGAAAACCGTCTCCTAGAAGAGTGGACAATTCT +
Preference number: 3 (lower is better)
Translates to: VPLPTPYRRLGL*GKPSPRRVDNS
Trigger: AGAATTGTCCACTCTTCTAGGAGACGGTTTTCCTCAGAGACCCAGCCTACGATATGGTGTGGGAAGTGGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR CCA 72 bp CAGAAGCCCTACATACACTCCTTTCATCCCAGTACTTaGGAGGCAGAGGCGGGTGGATCTGTAGAGTTTAAG +
Preference number: 3 (lower is better)
Translates to: QKPYIHSFHPST*EAEAGGSVEFK
Trigger: CTTAAACTCTACAGATCCACCCGCCTCTGCCTCCCAAGTACTGGGATGAAAGGAGTGTATGTAGGGCTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR CCA 72 bp TCTGATTGTTGGTTCCCTTTTGCCAAGCACTCACCCTaGCTCTGGCTTGTCCAAATTCCAGTCAGGCTGTCA +
Preference number: 3 (lower is better)
Translates to: SDCWFPFAKHSP*LWLVQIPVRLS
Trigger: TGACAGCCTGACTGGAATTTGGACAAGCCAGAGCCAGGGTGAGTGCTTGGCAAAAGGGAACCAACAATCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
3UTR GCA 72 bp TGCTGGAAATGCAGCTCAGTTGGTAGCACACTGCCTTaGCTAGCACTCATAGACCCCCTGAATAAGAACAAG +
Preference number: 3 (lower is better)
Translates to: CWKCSSVGSTLP*LALIDPLNKNK
Trigger: CTTGTTCTTATTCAGGGGGTCTATGAGTGCTAGGCAAGGCAGTGTGCTACCAACTGAGCTGCATTTCCAGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
3UTR CCA 72 bp GTAGACACTGAATTTCTCCCCTCTGATTCCCAGGCCTaGCAAACACGGGGCATAGCTACAAGGATAGTTACT +
Preference number: 3 (lower is better)
Translates to: VDTEFLPSDSQA*QTRGIATRIVT
Trigger: AGTAACTATCCTTGTAGCTATGCCCCGTGTTTGCCAGGCCTGGGAATCAGAGGGGAGAAATTCAGTGTCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR GCA 90 bp GAGGGTCTACGCTGGGTTCGGGAGCAGCCATGTCAGGGCAGGAGTGTGGGATCTGAGAGGCAGGGAGGGTaGCAGCTGATGGGGAGGCCC +
Preference number: 4 (lower is better)
Translates to: EGLRWVREQPCQGRSVGSERQGG*QLMGRP
Trigger: GGGCCTCCCCATCAGCTGGCACCCTCCCTGCCTCTC...AGATCCCACACTCCTGCCCTGACATGGCTGCTCCCGAACCCAGCGTAGACCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CCA 90 bp CCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGGGAGCAGGGTTGGCGCTGGCCCTaGGGGCAGCACTGCCAAAGC +
Preference number: 4 (lower is better)
Translates to: PANFLLAMEEGLRWVREQGWRWP*GQHCQS
Trigger: GCTTTGGCAGTGCTGCCCCCAGGGCCAGCGCCAACC...CTGCTCCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp GAGGGTCTACGCTGGGTTCGGGAGCAGCCATGTCAGGGCAGGAGTGTGGGATCTGACCAAGGTTGGCGCTaGCCCTGGGGGCAGCACTGC +
Preference number: 4 (lower is better)
Translates to: EGLRWVREQPCQGRSVGSDQGWR*PWGQHC
Trigger: GCAGTGCTGCCCCCAGGGCCAGCGCCAACCTTGGTC...AGATCCCACACTCCTGCCCTGACATGGCTGCTCCCGAACCCAGCGTAGACCCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp CAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGGGAGCAGCGGGCCACCCTTCTGGTaGACTGGGAACAGCCCACCC +
Preference number: 4 (lower is better)
Translates to: QPTSSWPWKRVYAGFGSSGPPFW*TGNSPP
Trigger: GGGTGGGCTGTTCCCAGTGCACCAGAAGGGTGGCCC...GCTGCTCCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp CCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGGGAGCAGGCGGCGCAGTCTCGCTaGCGGAAGCTGCAACGGAAC +
Preference number: 4 (lower is better)
Translates to: PANFLLAMEEGLRWVREQAAQSR*RKLQRN
Trigger: GTTCCGTTGCAGCTTCCGGCAGCGAGACTGCGCCGC...CTGCTCCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp TCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGGGAGCAGCCATGTCAGGGCGGCGCAGTCTCGCTaGCGGAAGCTGCAACGGAAC +
Preference number: 4 (lower is better)
Translates to: SSWPWKRVYAGFGSSHVRAAQSR*RKLQRN
Trigger: GTTCCGTTGCAGCTTCCGGCAGCGAGACTGCGCCGC...CCTGACATGGCTGCTCCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp AGAGGGTCTACGCTGGGTTCGGGAGCAGCCATGTCAGGGCAGGAGTGTGGGATCACCCCAGGCAGCAGATaGGGGTCGCGGTTGATGCGG +
Preference number: 4 (lower is better)
Translates to: RGSTLGSGAAMSGQECGITPGSR*GSRLMR
Trigger: CCGCATCAACCGCGACCCCCATCTGCTGCCTGGGGT...GATCCCACACTCCTGCCCTGACATGGCTGCTCCCGAACCCAGCGTAGACCCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp CAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGGACCAAGGTTGGCGCTaGCCCTGGGGGCAGCACTGC +
Preference number: 4 (lower is better)
Translates to: QGSSQLPPGHGRGSTLGSDQGWR*PWGQHC
Trigger: GCAGTGCTGCCCCCAGGGCCAGCGCCAACCTTGGTC...CGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp GTTACCGAAGCCCTGCCTGCAGCAGCCATATGCTTCCAGCTCACTGCACAGCGCGGGCTTGACCAAGGTTaGCGCTGGCCCTGGGGGCAG +
Preference number: 4 (lower is better)
Translates to: VTEALPAAAICFQLTAQRGLDQG*RWPWGQ
Trigger: CTGCCCCCAGGGCCAGCGCCAACCTTGGTCAAGCCC...GCGCTGTGCAGTGAGCTGGAAGCATATGGCTGCTGCAGGCAGGGCTTCGGTAAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000200826.4
CDS-3UTR TCA 90 bp AGAGGGTCTACGCTGGGTTCGGGAGCAGCCATGTCAGGGCAGGAGTGTGGGATCAGCCCCACGGCTGAGTaGGGCACGCACAAAGTCCAG +
Preference number: 4 (lower is better)
Translates to: RGSTLGSGAAMSGQECGISPTAE*GTHKVQ
Trigger: CTGGACTTTGTGCGTGCCTCACTCAGCCGTGGGGCT...GATCCCACACTCCTGCCCTGACATGGCTGCTCCCGAACCCAGCGTAGACCCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR TCA 90 bp CCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGGGAGCAGAGCCCCACGGCTGAGTaGGGCACGCACAAAGTCCAG +
Preference number: 4 (lower is better)
Translates to: PANFLLAMEEGLRWVREQSPTAE*GTHKVQ
Trigger: CTGGACTTTGTGCGTGCCTCACTCAGCCGTGGGGCT...CTGCTCCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp CTTCCAGCTCACTGCACAGCGCCCTCTAGGCCTTGGGAGGCTGCTGAGAGCCCTGGACAGAGGGCACGGTaGATGTTGTGCAGAGCGTGG +
Preference number: 4 (lower is better)
Translates to: LPAHCTAPSRPWEAAESPGQRAR*MLCRAW
Trigger: CCACGCTCTGCACAACATGCACCGTGCCCTCTGTCC...AGGGCTCTCAGCAGCCTCCCAAGGCCTAGAGGGCGCTGTGCAGTGAGCTGGAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CCA 90 bp CCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGGGAGCAGGCTGGGCCACCCTTCTaGTGCACTGGGAACAGCCCA +
Preference number: 4 (lower is better)
Translates to: PANFLLAMEEGLRWVREQAGPPF*CTGNSP
Trigger: TGGGCTGTTCCCAGTGCACCAGAAGGGTGGCCCAGC...CTGCTCCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp TTCCAGCTCACTGCACAGCGCCCTCTAGGCCTTGGGAGGCTGCTGAGAGCCCTGGCCATGGCCTTGGCTTaGAAGAAGTCTGGGGGCACG +
Preference number: 4 (lower is better)
Translates to: FQLTAQRPLGLGRLLRALAMALA*KKSGGT
Trigger: CGTGCCCCCAGACTTCTTCCAAGCCAAGGCCATGGC...CAGGGCTCTCAGCAGCCTCCCAAGGCCTAGAGGGCGCTGTGCAGTGAGCTGGAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CCA 90 bp GGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGACGGCCCGCAGAGAGTaGGCGGCGCAGTCTCGCTGC +
Preference number: 4 (lower is better)
Translates to: GVGVIARLQPTSSWPWKRTARRE*AAQSRC
Trigger: GCAGCGAGACTGCGCCGCCCACTCTCTGCGGGCCGT...CCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp CCAACTGTAGCTCCAGACCTAGGGGATCTGGTCGCCCTCCTCTGGCCTCTGTGGAGAGGCGGGTGGTGTTaGGACAGAGGGCACGGTGCA +
Preference number: 4 (lower is better)
Translates to: PTVAPDLGDLVALLWPLWRGGWC*DRGHGA
Trigger: TGCACCGTGCCCTCTGTCCCAACACCACCCGCCTCT...CCACAGAGGCCAGAGGAGGGCGACCAGATCCCCTAGGTCTGGAGCTACAGTTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR TCA 90 bp GGTGACTTTGGGGGCAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTAGGCCAGCTCAATGGTaGTGGCGCCCTCGGCAGCCC +
Preference number: 4 (lower is better)
Translates to: GDFGGRHGVGVIARLQPTRPAQW*WRPRQP
Trigger: GGGCTGCCGAGGGCGCCATCACCATTGAGCTGGCCT...AGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTGCCCCCAAAGTCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR TCA 90 bp GCTGGTTTTCTCACACAGGACTTTGTCCCTGCCTGTTACCGAAGCCCTGCCTGCCTAGGCAGGCGATGGTaGCAGGTCCCACCGCCCAGG +
Preference number: 4 (lower is better)
Translates to: AGFLTQDFVPACYRSPACLGRRW*QVPPPR
Trigger: CCTGGGCGGTGGGACCTGTCACCATCGCCTGCCTAG...GCAGGCAGGGCTTCGGTAACAGGCAGGGACAAAGTCCTGTGTGAGAAAACCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR GCA 90 bp TTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTCGGGCGCTGGGCTTCTaGAACAGGGCTCGCACCACA +
Preference number: 4 (lower is better)
Translates to: LQGSSQLPPGHGRGSTLGRALGF*NRARTT
Trigger: TGTGGTGCGAGCCCTGTTGCAGAAGCCCAGCGCCCG...ACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp AACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGGGAGCAGCCATGTCGGGCGCTGGGCTTCTaGAACAGGGCTCGCACCACA +
Preference number: 4 (lower is better)
Translates to: NFLLAMEEGLRWVREQPCRALGF*NRARTT
Trigger: TGTGGTGCGAGCCCTGTTGCAGAAGCCCAGCGCCCG...ACATGGCTGCTCCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp AGAGGGTCTACGCTGGGTTCGGGAGCAGCCATGTCAGGGCAGGAGTGTGGGATCGGACAGAGGGCACGGTaGATGTTGTGCAGAGCGTGG +
Preference number: 4 (lower is better)
Translates to: RGSTLGSGAAMSGQECGIGQRAR*MLCRAW
Trigger: CCACGCTCTGCACAACATGCACCGTGCCCTCTGTCC...GATCCCACACTCCTGCCCTGACATGGCTGCTCCCGAACCCAGCGTAGACCCTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp GAGGGTCTACGCTGGGTTCGGGAGCAGCCATGTCAGGGCAGGAGTGTGGGATCTCCGTCAGGACAGATGTaGCGTGAGCCATCAGCCCCA +
Preference number: 4 (lower is better)
Translates to: EGLRWVREQPCQGRSVGSPSGQM*REPSAP
Trigger: TGGGGCTGATGGCTCACGCCACATCTGTCCTGACGG...AGATCCCACACTCCTGCCCTGACATGGCTGCTCCCGAACCCAGCGTAGACCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp TATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGAGGCTGCGCGGCTCATaGCACGGCCCACCTTCTCCG +
Preference number: 4 (lower is better)
Translates to: YCKAPANFLLAMEEGLRWRLRGS*HGPPSP
Trigger: CGGAGAAGGTGGGCCGTGCCATGAGCCGCGCAGCCT...CCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp GGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTACGGCCCGCAGAGAGTaGGCGGCGCAGTCTCGCTGC +
Preference number: 4 (lower is better)
Translates to: GRCYCKAPANFLLAMEEGTARRE*AAQSRC
Trigger: GCAGCGAGACTGCGCCGCCCACTCTCTGCGGGCCGT...ACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp TTGGGAGCAGAAGCGGAGGCTGAGCCCTGGCGCCCTCTACTGGTGAGCTCCAGACTGGTAGGTGCCCGGTaGCTCACCACGTTCTTCTGT +
Preference number: 4 (lower is better)
Translates to: LGAEAEAEPWRPLLVSSRLVGAR*LTTFFC
Trigger: ACAGAAGAACGTGGTGAGCCACCGGGCACCTACCAG...TCTGGAGCTCACCAGTAGAGGGCGCCAGGGCTCAGCCTCCGCTTCTGCTCCCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR TCA 90 bp TTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTAGGACAGATGTGGCGTaGGCCATCAGCCCCACGGCT +
Preference number: 4 (lower is better)
Translates to: LQGSSQLPPGHGRGSTLGRTDVA*AISPTA
Trigger: AGCCGTGGGGCTGATGGCTCACGCCACATCTGTCCT...ACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR TCA 90 bp TGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTAGGACAGATGTGGCGTaGGCCATCAGCCCCACGGCT +
Preference number: 4 (lower is better)
Translates to: CKAPANFLLAMEEGLRWVRTDVA*AISPTA
Trigger: AGCCGTGGGGCTGATGGCTCACGCCACATCTGTCCT...AACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR TCA 90 bp CATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGCCAGCTCAATGGTaGTGGCGCCCTCGGCAGCCC +
Preference number: 4 (lower is better)
Translates to: HGVGVIARLQPTSSWPWKRPAQW*WRPRQP
Trigger: GGGCTGCCGAGGGCGCCATCACCATTGAGCTGGCCT...CTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR TCA 90 bp CTTCCAGCTCACTGCACAGCGCCCTCTAGGCCTTGGGAGGCTGCTGAGAGCCCTCTCTTCACCTCATTCTaGAGGCAGGGCTCGCTACAG +
Preference number: 4 (lower is better)
Translates to: LPAHCTAPSRPWEAAESPLFTSF*RQGSLQ
Trigger: CTGTAGCGAGCCCTGCCTTCAGAATGAGGTGAAGAG...AGGGCTCTCAGCAGCCTCCCAAGGCCTAGAGGGCGCTGTGCAGTGAGCTGGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR TCA 90 bp CATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGCTAGGCAGGCGATGGTaGCAGGTCCCACCGCCCAGG +
Preference number: 4 (lower is better)
Translates to: HGVGVIARLQPTSSWPWKLGRRW*QVPPPR
Trigger: CCTGGGCGGTGGGACCTGTCACCATCGCCTGCCTAG...CTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR GCA 90 bp CAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGCCGCAGCAGCAGCAGTaGCAGGAACCTAAGCAGGGA +
Preference number: 4 (lower is better)
Translates to: QGSSQLPPGHGRGSTLGSPQQQQ*QEPKQG
Trigger: TCCCTGCTTAGGTTCCTGGCACTGCTGCTGCTGCGG...CGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp GGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCACACCCTCGAAGGCTaGGCGGCTCATGGCACGGCC +
Preference number: 4 (lower is better)
Translates to: GRCYCKAPANFLLAMEEGHTLEG*AAHGTA
Trigger: GGCCGTGCCATGAGCCGCGCAGCCTTCGAGGGTGTG...ACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp CATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGCACACCCTCGAAGGCTaGGCGGCTCATGGCACGGCC +
Preference number: 4 (lower is better)
Translates to: HGVGVIARLQPTSSWPWKHTLEG*AAHGTA
Trigger: GGCCGTGCCATGAGCCGCGCAGCCTTCGAGGGTGTG...CTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp TGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCTCGCTGCCGGAAGCTaGAACGGAACCTCTCCTCCC +
Preference number: 4 (lower is better)
Translates to: CKAPANFLLAMEEGLRWVLAAGS*NGTSPP
Trigger: GGGAGGAGAGGTTCCGTTGCAGCTTCCGGCAGCGAG...AACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp GCCTCGCCACAGGCATGTCTGCACCCCTTTCCTTGTGGGCTCCTTTCTGGCTACCAGACCTCGCCGGGCTaGACGCTCTTCACCTCATTC +
Preference number: 4 (lower is better)
Translates to: ASPQACLHPFPCGLLSGYQTSPG*TLFTSF
Trigger: GAATGAGGTGAAGAGCGTGCAGCCCGGCGAGGTCTG...GTAGCCAGAAAGGAGCCCACAAGGAAAGGGGTGCAGACATGCCTGTGGCGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR GCA 90 bp GGGGGCAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGAAAGCGGCTGGTAGGTaGCCGGTGGCTCACCACGTT +
Preference number: 4 (lower is better)
Translates to: GGRHGVGVIARLQPTSSWKAAGR*PVAHHV
Trigger: AACGTGGTGAGCCACCGGGCACCTACCAGCCGCTTT...CCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTGCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp TTCCAGCTCACTGCACAGCGCCCTCTAGGCCTTGGGAGGCTGCTGAGAGCCCTGACAGCCGCAGGAGATTaGCCACCTGGATGGAGACAT +
Preference number: 4 (lower is better)
Translates to: FQLTAQRPLGLGRLLRALTAAGD*PPGWRH
Trigger: ATGTCTCCATCCAGGTGGCCAATCTCCTGCGGCTGT...CAGGGCTCTCAGCAGCCTCCCAAGGCCTAGAGGGCGCTGTGCAGTGAGCTGGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CCA 90 bp GGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGGTTGGCGCTGGCCCTaGGGGCAGCACTGCCAAAGC +
Preference number: 4 (lower is better)
Translates to: GVIARLQPTSSWPWKRVYGWRWP*GQHCQS
Trigger: GCTTTGGCAGTGCTGCCCCCAGGGCCAGCGCCAACC...GTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR TCA 90 bp AGCTCACAACCAACTGTAGCTCCAGACCTAGGGGATCTGGTCGCCCTCCTCTGGGCGTGCAGAGAGCGATaGGGAGCACGTTGTAGGCCA +
Preference number: 4 (lower is better)
Translates to: SSQPTVAPDLGDLVALLWACRER*GARCRP
Trigger: TGGCCTACAACGTGCTCCTCATCGCTCTCTGCACGC...CCAGAGGAGGGCGACCAGATCCCCTAGGTCTGGAGCTACAGTTGGTTGTGAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR TCA 90 bp AGAGGGTCTACGCTGGGTTCGGGAGCAGCCATGTCAGGGCAGGAGTGTGGGATCAAGCGACGATGTTGTTaGGTCTACCACCTCACGGCC +
Preference number: 4 (lower is better)
Translates to: RGSTLGSGAAMSGQECGIKRRCC*VYHLTA
Trigger: GGCCGTGAGGTGGTAGACTCAACAACATCGTCGCTT...GATCCCACACTCCTGCCCTGACATGGCTGCTCCCGAACCCAGCGTAGACCCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp GGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTGGGCCACCCTTCTGGTaGACTGGGAACAGCCCACCC +
Preference number: 4 (lower is better)
Translates to: GRCYCKAPANFLLAMEEGGPPFW*TGNSPP
Trigger: GGGTGGGCTGTTCCCAGTGCACCAGAAGGGTGGCCC...ACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp GAAGCCCTGCCTGCAGCAGCCATATGCTTCCAGCTCACTGCACAGCGCCCTCTAACAAAGTCCAGGGCCTaGTCCAGGGCGTGTGTATCC +
Preference number: 4 (lower is better)
Translates to: EALPAAAICFQLTAQRPLTKSRA*SRACVS
Trigger: GGATACACACGCCCTGGAGCAGGCCCTGGACTTTGT...TAGAGGGCGCTGTGCAGTGAGCTGGAAGCATATGGCTGCTGCAGGCAGGGCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR GCA 90 bp GGGGGCAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGACAAAGTCCAGGGCCTaGTCCAGGGCGTGTGTATCC +
Preference number: 4 (lower is better)
Translates to: GGRHGVGVIARLQPTSSWTKSRA*SRACVS
Trigger: GGATACACACGCCCTGGAGCAGGCCCTGGACTTTGT...CCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTGCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp TGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTTCCACACTCCTCTGCTaGGCCACCCTTCTGGTGCAC +
Preference number: 4 (lower is better)
Translates to: CKAPANFLLAMEEGLRWVSTLLC*ATLLVH
Trigger: GTGCACCAGAAGGGTGGCCCAGCAGAGGAGTGTGGA...AACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp AGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGGGACAGCCGCAGGAGATTaGCCACCTGGATGGAGACAT +
Preference number: 4 (lower is better)
Translates to: RLQPTSSWPWKRVYAGFGTAAGD*PPGWRH
Trigger: ATGTCTCCATCCAGGTGGCCAATCTCCTGCGGCTGT...CCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp CATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGCAGCCACACGGGCGCTaGGCTTCTGCAACAGGGCTC +
Preference number: 4 (lower is better)
Translates to: HGVGVIARLQPTSSWPWKQPHGR*ASATGL
Trigger: GAGCCCTGTTGCAGAAGCCCAGCGCCCGTGTGGCTG...CTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp GGCAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCACTGGCGTTGAGACGCTaGGTGGCTGCAAGCAGCTCA +
Preference number: 4 (lower is better)
Translates to: GRHGVGVIARLQPTSSWPLALRR*VAASSS
Trigger: TGAGCTGCTTGCAGCCACCCAGCGTCTCAACGCCAG...TGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp TGGGGGCAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGCCAACACAAAGAGGGTaGCCAGGGCACCTAGGCAGG +
Preference number: 4 (lower is better)
Translates to: WGQAWGRCYCKAPANFLLPTQRG*PGHLGR
Trigger: CCTGCCTAGGTGCCCTGGCCACCCTCTTTGTGTTGG...CAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTGCCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CCA 90 bp GGGGGCAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCTGGTAGGTGCCCGGTaGCTCACCACGTTCTTCTGT +
Preference number: 4 (lower is better)
Translates to: GGRHGVGVIARLQPTSSWLVGAR*LTTFFC
Trigger: ACAGAAGAACGTGGTGAGCCACCGGGCACCTACCAG...CCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTGCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR TCA 90 bp TGGGCACTGCATGCATGTGGTGCAGAAGCCCTACATACACTCCTTTCATCCCAGAGGGAGGGTGCCAGCTaGTGGGGAGGCCCATGGGAT +
Preference number: 4 (lower is better)
Translates to: WALHACGAEALHTLLSSQREGAS*WGGPWD
Trigger: ATCCCATGGGCCTCCCCATCAGCTGGCACCCTCCCT...CTGGGATGAAAGGAGTGTATGTAGGGCTTCTGCACCACATGCATGCAGTGCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR TCA 90 bp GAGGGTCTACGCTGGGTTCGGGAGCAGCCATGTCAGGGCAGGAGTGTGGGATCTCACAGTCAGCACAGGTaGACTCATCCAGCCTGTACT +
Preference number: 4 (lower is better)
Translates to: EGLRWVREQPCQGRSVGSHSQHR*THPACT
Trigger: AGTACAGGCTGGATGAGTTCACCTGTGCTGACTGTG...AGATCCCACACTCCTGCCCTGACATGGCTGCTCCCGAACCCAGCGTAGACCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR TCA 90 bp AGCTCACAACCAACTGTAGCTCCAGACCTAGGGGATCTGGTCGCCCTCCTCTGGCTTGGTGAGGAGGGCTaGGTAGCAGACAGAGAAGGC +
Preference number: 4 (lower is better)
Translates to: SSQPTVAPDLGDLVALLWLGEEG*VADREG
Trigger: GCCTTCTCTGTCTGCTACTCAGCCCTCCTCACCAAG...CCAGAGGAGGGCGACCAGATCCCCTAGGTCTGGAGCTACAGTTGGTTGTGAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR TCA 90 bp TTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGTGGGATCCAGACCCTTaGCCAAGGTTGGCGCTGGCC +
Preference number: 4 (lower is better)
Translates to: LLQGSSQLPPGHGRGSTLWDPDP*PRLALA
Trigger: GGCCAGCGCCAACCTTGGTCAAGGGTCTGGATCCCA...CAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp GCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGACGCTGGGTGGCTaGAAGCAGCTCACGGGCATC +
Preference number: 4 (lower is better)
Translates to: AWGRCYCKAPANFLLAMEETLGG*KQLTGI
Trigger: GATGCCCGTGAGCTGCTTGCAGCCACCCAGCGTCTC...TTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp GTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGGAGACGCTGGGTGGCTaGAAGCAGCTCACGGGCATC +
Preference number: 4 (lower is better)
Translates to: VLLQGSSQLPPGHGRGSTETLGG*KQLTGI
Trigger: GATGCCCGTGAGCTGCTTGCAGCCACCCAGCGTCTC...CGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp CAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGCGGCAGCCCTTTCACTaGCTGCCACCACGCTCTCTA +
Preference number: 4 (lower is better)
Translates to: QAWGRCYCKAPANFLLAMRQPFH*LPPRSL
Trigger: TAGAGAGCGTGGTGGCAGGCAGTGAAAGGGCTGCCG...CATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp TATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGCGGCAGCCCTTTCACTaGCTGCCACCACGCTCTCTA +
Preference number: 4 (lower is better)
Translates to: YCKAPANFLLAMEEGLRWRQPFH*LPPRSL
Trigger: TAGAGAGCGTGGTGGCAGGCAGTGAAAGGGCTGCCG...CCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp TTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGCTCGCTGCCGGAAGCTaGAACGGAACCTCTCCTCCC +
Preference number: 4 (lower is better)
Translates to: LLQGSSQLPPGHGRGSTLLAAGS*NGTSPP
Trigger: GGGAGGAGAGGTTCCGTTGCAGCTTCCGGCAGCGAG...CAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp GCTGGTTTTCTCACACAGGACTTTGTCCCTGCCTGTTACCGAAGCCCTGCCTGCCTGGCCCGAGATAAGTaGCAGGCAGATGGCCACCTG +
Preference number: 4 (lower is better)
Translates to: AGFLTQDFVPACYRSPACLARDK*QADGHL
Trigger: CAGGTGGCCATCTGCCTGGCACTTATCTCGGGCCAG...GCAGGCAGGGCTTCGGTAACAGGCAGGGACAAAGTCCTGTGTGAGAAAACCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR GCA 90 bp CCTTCAGAGTCTGGAAAGGACCCTTTTCTGATGACAGCCGCAGATGGCCTCGCCCTGGCCCGAGATAAGTaGCAGGCAGATGGCCACCTG +
Preference number: 4 (lower is better)
Translates to: PSESGKDPFLMTAADGLALARDK*QADGHL
Trigger: CAGGTGGCCATCTGCCTGGCACTTATCTCGGGCCAG...GGCGAGGCCATCTGCGGCTGTCATCAGAAAAGGGTCCTTTCCAGACTCTGAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR GCA 90 bp CATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGCTTGCCTATGCCAGGTaGCTCCACCACCAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: HGVGVIARLQPTSSWPWKLAYAR*LHHQPG
Trigger: GCCTGGCTGGTGGTGGAGGCACCTGGCATAGGCAAG...CTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CCA 90 bp GGTGACTTTGGGGGCAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTACCCTTCTGGTGCACTaGGAACAGCCCACCCAGCAC +
Preference number: 4 (lower is better)
Translates to: GDFGGRHGVGVIARLQPTTLLVH*EQPTQH
Trigger: GTGCTGGGTGGGCTGTTCCCAGTGCACCAGAAGGGT...AGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTGCCCCCAAAGTCACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp GCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGCTGGGCCACCCTTCTaGTGCACTGGGAACAGCCCA +
Preference number: 4 (lower is better)
Translates to: AWGRCYCKAPANFLLAMEAGPPF*CTGNSP
Trigger: TGGGCTGTTCCCAGTGCACCAGAAGGGTGGCCCAGC...TTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp AGAGGGTCTACGCTGGGTTCGGGAGCAGCCATGTCAGGGCAGGAGTGTGGGATCCCAGTGCAAAAAGCATaGCCTCTAGGCGCTGTATGC +
Preference number: 4 (lower is better)
Translates to: RGSTLGSGAAMSGQECGIPVQKA*PLGAVC
Trigger: GCATACAGCGCCTAGAGGCCATGCTTTTTGCACTGG...GATCCCACACTCCTGCCCTGACATGGCTGCTCCCGAACCCAGCGTAGACCCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp GGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGCCGTCAGGACAGATGTaGCGTGAGCCATCAGCCCCA +
Preference number: 4 (lower is better)
Translates to: GVGVIARLQPTSSWPWKRPSGQM*REPSAP
Trigger: TGGGGCTGATGGCTCACGCCACATCTGTCCTGACGG...CCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp CCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGGGAGCAGGATTGGCCACCTGGATaGAGACATCACTGTAGGAGC +
Preference number: 4 (lower is better)
Translates to: PANFLLAMEEGLRWVREQDWPPG*RHHCRS
Trigger: GCTCCTACAGTGATGTCTCCATCCAGGTGGCCAATC...CTGCTCCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp GTTACCGAAGCCCTGCCTGCAGCAGCCATATGCTTCCAGCTCACTGCACAGCGCGGCATAGCTGATCTGTaGGATCTGGAACAGCCGCAG +
Preference number: 4 (lower is better)
Translates to: VTEALPAAAICFQLTAQRGIADL*DLEQPQ
Trigger: CTGCGGCTGTTCCAGATCCCACAGATCAGCTATGCC...GCGCTGTGCAGTGAGCTGGAAGCATATGGCTGCTGCAGGCAGGGCTTCGGTAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CCA 90 bp GGGGGCAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGGGCATAGCTGATCTGTaGGATCTGGAACAGCCGCAG +
Preference number: 4 (lower is better)
Translates to: GGRHGVGVIARLQPTSSWGIADL*DLEQPQ
Trigger: CTGCGGCTGTTCCAGATCCCACAGATCAGCTATGCC...CCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTGCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp GCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAAGAGGCGGGTGGTGTTaGGACAGAGGGCACGGTGCA +
Preference number: 4 (lower is better)
Translates to: AWGRCYCKAPANFLLAMERGGWC*DRGHGA
Trigger: TGCACCGTGCCCTCTGTCCCAACACCACCCGCCTCT...TTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp TCCCAGGCCTGGCAAACACGGGGCATAGCTACAAGGATAGTTACTGGCCAATGCCATCGCAGAGGCGGGTaGTGTTGGGACAGAGGGCAC +
Preference number: 4 (lower is better)
Translates to: SQAWQTRGIATRIVTGQCHRRGG*CWDRGH
Trigger: GTGCCCTCTGTCCCAACACCACCCGCCTCTGCGATG...GCATTGGCCAGTAACTATCCTTGTAGCTATGCCCCGTGTTTGCCAGGCCTGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CCA 90 bp GGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACCATCGCAGAGGCGGGTaGTGTTGGGACAGAGGGCAC +
Preference number: 4 (lower is better)
Translates to: GVIARLQPTSSWPWKRVYHRRGG*CWDRGH
Trigger: GTGCCCTCTGTCCCAACACCACCCGCCTCTGCGATG...GTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp GGGCAGCTCACAACCAACTGTAGCTCCAGACCTAGGGGATCTGGTCGCCCTCCTCAGCGGATGTACTCCTaGGGCAGCTCAAAGCATCCA +
Preference number: 4 (lower is better)
Translates to: GQLTTNCSSRPRGSGRPPQRMYS*GSSKHP
Trigger: TGGATGCTTTGAGCTGCCCCAGGAGTACATCCGCTG...AGGAGGGCGACCAGATCCCCTAGGTCTGGAGCTACAGTTGGTTGTGAGCTGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR CCA 90 bp AGCTCACAACCAACTGTAGCTCCAGACCTAGGGGATCTGGTCGCCCTCCTCTGGCTGGTAGGTGCCCGGTaGCTCACCACGTTCTTCTGT +
Preference number: 4 (lower is better)
Translates to: SSQPTVAPDLGDLVALLWLVGAR*LTTFFC
Trigger: ACAGAAGAACGTGGTGAGCCACCGGGCACCTACCAG...CCAGAGGAGGGCGACCAGATCCCCTAGGTCTGGAGCTACAGTTGGTTGTGAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR CCA 90 bp GGCACTGCATGCATGTGGTGCAGAAGCCCTACATACACTCCTTTCATCCCAGTAGACCAAGGTTGGCGCTaGCCCTGGGGGCAGCACTGC +
Preference number: 4 (lower is better)
Translates to: GTACMWCRSPTYTPFIPVDQGWR*PWGQHC
Trigger: GCAGTGCTGCCCCCAGGGCCAGCGCCAACCTTGGTC...TACTGGGATGAAAGGAGTGTATGTAGGGCTTCTGCACCACATGCATGCAGTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR TCA 90 bp GTAGGTGACTTTGGGGGCAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAAGGAGGCAAAGTCACTaGTGGGGTAGGAGGCCAGCT +
Preference number: 4 (lower is better)
Translates to: VGDFGGRHGVGVIARLQPRRQSH*WGRRPA
Trigger: AGCTGGCCTCCTACCCCATCAGTGACTTTGCCTCCT...TGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTGCCCCCAAAGTCACCTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp CATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGCCGCAGCAGCAGCAGTaGCAGGAACCTAAGCAGGGA +
Preference number: 4 (lower is better)
Translates to: HGVGVIARLQPTSSWPWKPQQQQ*QEPKQG
Trigger: TCCCTGCTTAGGTTCCTGGCACTGCTGCTGCTGCGG...CTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp TCCTTCAGAGTCTGGAAAGGACCCTTTTCTGATGACAGCCGCAGATGGCCTCGCAAAGCGGCTGGTAGGTaGCCGGTGGCTCACCACGTT +
Preference number: 4 (lower is better)
Translates to: SFRVWKGPFSDDSRRWPRKAAGR*PVAHHV
Trigger: AACGTGGTGAGCCACCGGGCACCTACCAGCCGCTTT...GCGAGGCCATCTGCGGCTGTCATCAGAAAAGGGTCCTTTCCAGACTCTGAAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR CCA 90 bp GGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACACCCTTCTGGTGCACTaGGAACAGCCCACCCAGCAC +
Preference number: 4 (lower is better)
Translates to: GVIARLQPTSSWPWKRVYTLLVH*EQPTQH
Trigger: GTGCTGGGTGGGCTGTTCCCAGTGCACCAGAAGGGT...GTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp GGGGGCAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCAGTGCAAAAAGCATaGCCTCTAGGCGCTGTATGC +
Preference number: 4 (lower is better)
Translates to: GGRHGVGVIARLQPTSSWPVQKA*PLGAVC
Trigger: GCATACAGCGCCTAGAGGCCATGCTTTTTGCACTGG...CCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTGCCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp GTAGGTGACTTTGGGGGCAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAGGCTTGGAAGAAGTCTaGGGGCACGGTGCGAGCAAA +
Preference number: 4 (lower is better)
Translates to: VGDFGGRHGVGVIARLQPGLEEV*GHGASK
Trigger: TTTGCTCGCACCGTGCCCCCAGACTTCTTCCAAGCC...TGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTGCCCCCAAAGTCACCTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp GGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTGCCATGGCCTTGGCTTaGAAGAAGTCTGGGGGCACG +
Preference number: 4 (lower is better)
Translates to: GRCYCKAPANFLLAMEEGAMALA*KKSGGT
Trigger: CGTGCCCCCAGACTTCTTCCAAGCCAAGGCCATGGC...ACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp CTGATTGTTGGTTCCCTTTTGCCAAGCACTCACCCTGGCTCTGGCTTGTCCAAACAGCCACACGGGCGCTaGGCTTCTGCAACAGGGCTC +
Preference number: 4 (lower is better)
Translates to: LIVGSLLPSTHPGSGLSKQPHGR*ASATGL
Trigger: GAGCCCTGTTGCAGAAGCCCAGCGCCCGTGTGGCTG...TTTGGACAAGCCAGAGCCAGGGTGAGTGCTTGGCAAAAGGGAACCAACAATCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CCA 90 bp GCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAACTGGCGTTGAGACGCTaGGTGGCTGCAAGCAGCTCA +
Preference number: 4 (lower is better)
Translates to: AWGRCYCKAPANFLLAMELALRR*VAASSS
Trigger: TGAGCTGCTTGCAGCCACCCAGCGTCTCAACGCCAG...TTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp AACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGGGAGCAGCCATGTCAGCGGATGTACTCCTaGGGCAGCTCAAAGCATCCA +
Preference number: 4 (lower is better)
Translates to: NFLLAMEEGLRWVREQPCQRMYS*GSSKHP
Trigger: TGGATGCTTTGAGCTGCCCCAGGAGTACATCCGCTG...ACATGGCTGCTCCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR TCA 90 bp CATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGGATGGGGGTCGCGGTTaGTGCGGTCCAGTGCAAAAA +
Preference number: 4 (lower is better)
Translates to: HGVGVIARLQPTSSWPWKDGGRG*CGPVQK
Trigger: TTTTTGCACTGGACCGCATCAACCGCGACCCCCATC...CTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR TCA 90 bp TCCCAGGCCTGGCAAACACGGGGCATAGCTACAAGGATAGTTACTGGCCAATGCAGGAGGCAAAGTCACTaGTGGGGTAGGAGGCCAGCT +
Preference number: 4 (lower is better)
Translates to: SQAWQTRGIATRIVTGQCRRQSH*WGRRPA
Trigger: AGCTGGCCTCCTACCCCATCAGTGACTTTGCCTCCT...GCATTGGCCAGTAACTATCCTTGTAGCTATGCCCCGTGTTTGCCAGGCCTGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR TCA 90 bp GGCTGTCATGAAAAGCCCACAGTCGGTGTCCCACTTCCCACACCATATCGTAGGCTTGGTGAGGAGGGCTaGGTAGCAGACAGAGAAGGC +
Preference number: 4 (lower is better)
Translates to: GCHEKPTVGVPLPTPYRRLGEEG*VADREG
Trigger: GCCTTCTCTGTCTGCTACTCAGCCCTCCTCACCAAG...CCTACGATATGGTGTGGGAAGTGGGACACCGACTGTGGGCTTTTCATGACAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR TCA 90 bp TGTTGGTTCCCTTTTGCCAAGCACTCACCCTGGCTCTGGCTTGTCCAAATTCCATGGGATCCAGACCCTTaGCCAAGGTTGGCGCTGGCC +
Preference number: 4 (lower is better)
Translates to: CWFPFAKHSPWLWLVQIPWDPDP*PRLALA
Trigger: GGCCAGCGCCAACCTTGGTCAAGGGTCTGGATCCCA...TGGAATTTGGACAAGCCAGAGCCAGGGTGAGTGCTTGGCAAAAGGGAACCAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR GCA 90 bp GGGCAGCTCACAACCAACTGTAGCTCCAGACCTAGGGGATCTGGTCGCCCTCCTAGTCTGGGGGCACGGTaGGAGCAAAGTAATCATAAC +
Preference number: 4 (lower is better)
Translates to: GQLTTNCSSRPRGSGRPPSLGAR*EQSNHN
Trigger: GTTATGATTACTTTGCTCGCACCGTGCCCCCAGACT...AGGAGGGCGACCAGATCCCCTAGGTCTGGAGCTACAGTTGGTTGTGAGCTGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR GCA 90 bp AACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGGGAGCAGCCATGTATAGCGCCCATTGCCTaGCCGCAGATAGGTGAAGAT +
Preference number: 4 (lower is better)
Translates to: NFLLAMEEGLRWVREQPCIAPIA*PQIGED
Trigger: ATCTTCACCTATCTGCGGGCAGGCAATGGGCGCTAT...ACATGGCTGCTCCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp GGCAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCAATAGCGCCCATTGCCTaGCCGCAGATAGGTGAAGAT +
Preference number: 4 (lower is better)
Translates to: GRHGVGVIARLQPTSSWPIAPIA*PQIGED
Trigger: ATCTTCACCTATCTGCGGGCAGGCAATGGGCGCTAT...TGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp TCTGATTGTTGGTTCCCTTTTGCCAAGCACTCACCCTGGCTCTGGCTTGTCCAACTTGCCTATGCCAGGTaGCTCCACCACCAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: SDCWFPFAKHSPWLWLVQLAYAR*LHHQPG
Trigger: GCCTGGCTGGTGGTGGAGGCACCTGGCATAGGCAAG...TTGGACAAGCCAGAGCCAGGGTGAGTGCTTGGCAAAAGGGAACCAACAATCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR GCA 90 bp GTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCCTGTCTCCTTGCCTATaGCAGGTGCCTCCACCACCA +
Preference number: 4 (lower is better)
Translates to: VGVIARLQPTSSWPWKRVLSPCL*QVPPPP
Trigger: TGGTGGTGGAGGCACCTGGCATAGGCAAGGAGACAG...GACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR GCA 90 bp GTCTCTGGCTGGTTTTCTCACACAGGACTTTGTCCCTGCCTGTTACCGAAGCCCCTGTCTCCTTGCCTATaGCAGGTGCCTCCACCACCA +
Preference number: 4 (lower is better)
Translates to: VSGWFSHTGLCPCLLPKPLSPCL*QVPPPP
Trigger: TGGTGGTGGAGGCACCTGGCATAGGCAAGGAGACAG...GGGCTTCGGTAACAGGCAGGGACAAAGTCCTGTGTGAGAAAACCAGCCAGAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR GCA 90 bp GGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGAATGTGCAGCTTGGGTaGAAAGAGGCAGCCGAGCAC +
Preference number: 4 (lower is better)
Translates to: GVGVIARLQPTSSWPWKRNVQLG*KEAAEH
Trigger: GTGCTCGGCTGCCTCTTTGCACCCAAGCTGCACATT...CCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp GGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGAGTTCTCCGGGCACTTaGGGGTCTTCTGGTAGCGAT +
Preference number: 4 (lower is better)
Translates to: GVGVIARLQPTSSWPWKRSSPGT*GSSGSD
Trigger: ATCGCTACCAGAAGACCCGCAAGTGCCCGGAGAACT...CCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp GGTGACTTTGGGGGCAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTGGGCGTGTGTATCCTTaGAGCAGCTGTCGAGGATGT +
Preference number: 4 (lower is better)
Translates to: GDFGGRHGVGVIARLQPTGRVYP*SSCRGC
Trigger: ACATCCTCGACAGCTGCTCCAAGGATACACACGCCC...AGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTGCCCCCAAAGTCACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp TATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGCAACAATGAGCAGCTaGCCCGAGATAAGTGCCAGG +
Preference number: 4 (lower is better)
Translates to: YCKAPANFLLAMEEGLRWATMSS*PEISAR
Trigger: CCTGGCACTTATCTCGGGCCAGCTGCTCATTGTTGC...CCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CCA 90 bp CCAACTGTAGCTCCAGACCTAGGGGATCTGGTCGCCCTCCTCTGGCCTCTGTGGCACCACGTTCTTCTGTaGCTGGAAGAGGATAATGTG +
Preference number: 4 (lower is better)
Translates to: PTVAPDLGDLVALLWPLWHHVLL*LEEDNV
Trigger: CACATTATCCTCTTCCAGCCACAGAAGAACGTGGTG...CCACAGAGGCCAGAGGAGGGCGACCAGATCCCCTAGGTCTGGAGCTACAGTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR TCA 90 bp GGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTGCCCGCAGATAGGTaGAGATGTTGTAGCGGCCAA +
Preference number: 4 (lower is better)
Translates to: GRCYCKAPANFLLAMEEGLPADR*RCCSGQ
Trigger: TTGGCCGCTACAACATCTTCACCTATCTGCGGGCAG...ACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR TCA 90 bp GCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAACTGCCCGCAGATAGGTaGAGATGTTGTAGCGGCCAA +
Preference number: 4 (lower is better)
Translates to: AWGRCYCKAPANFLLAMELPADR*RCCSGQ
Trigger: TTGGCCGCTACAACATCTTCACCTATCTGCGGGCAG...TTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR TCA 90 bp CTGGTTTTCTCACACAGGACTTTGTCCCTGCCTGTTACCGAAGCCCTGCCTGCAAAGCGACGATGTTGTTaGGTCTACCACCTCACGGCC +
Preference number: 4 (lower is better)
Translates to: LVFSHRTLSLPVTEALPAKRRCC*VYHLTA
Trigger: GGCCGTGAGGTGGTAGACTCAACAACATCGTCGCTT...TGCAGGCAGGGCTTCGGTAACAGGCAGGGACAAAGTCCTGTGTGAGAAAACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR GCA 90 bp GGTGACTTTGGGGGCAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTCGCTGTATGCCACGGTaGTCATTAACAGGTCCACAC +
Preference number: 4 (lower is better)
Translates to: GDFGGRHGVGVIARLQPTRCMPR*SLTGPH
Trigger: GTGTGGACCTGTTAATGAGCACCGTGGCATACAGCG...AGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTGCCCCCAAAGTCACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp AGAGTACTTGCTGCTTTCCAAGAGGGTTCAGATTTCAATTCCCAGCCTCAACAGGAGAGGCAGGGAGGGTaGCAGCTGATGGGGAGGCCC +
Preference number: 4 (lower is better)
Translates to: RVLAAFQEGSDFNSQPQQERQGG*QLMGRP
Trigger: GGGCCTCCCCATCAGCTGGCACCCTCCCTGCCTCTC...CTGTTGAGGCTGGGAATTGAAATCTGAACCCTCTTGGAAAGCAGCAAGTACTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR GCA 90 bp GGCACTGCATGCATGTGGTGCAGAAGCCCTACATACACTCCTTTCATCCCAGTACAGACCTCGCCGGGCTaGACGCTCTTCACCTCATTC +
Preference number: 4 (lower is better)
Translates to: GTACMWCRSPTYTPFIPVQTSPG*TLFTSF
Trigger: GAATGAGGTGAAGAGCGTGCAGCCCGGCGAGGTCTG...TACTGGGATGAAAGGAGTGTATGTAGGGCTTCTGCACCACATGCATGCAGTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR CCA 90 bp CTGGTTTTCTCACACAGGACTTTGTCCCTGCCTGTTACCGAAGCCCTGCCTGCAGGGCGTGTGTATCCTTaGAGCAGCTGTCGAGGATGT +
Preference number: 4 (lower is better)
Translates to: LVFSHRTLSLPVTEALPAGRVYP*SSCRGC
Trigger: ACATCCTCGACAGCTGCTCCAAGGATACACACGCCC...TGCAGGCAGGGCTTCGGTAACAGGCAGGGACAAAGTCCTGTGTGAGAAAACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CCA 90 bp AGAGTACTTGCTGCTTTCCAAGAGGGTTCAGATTTCAATTCCCAGCCTCAACAGAGGCTGCGCGGCTCATaGCACGGCCCACCTTCTCCG +
Preference number: 4 (lower is better)
Translates to: RVLAAFQEGSDFNSQPQQRLRGS*HGPPSP
Trigger: CGGAGAAGGTGGGCCGTGCCATGAGCCGCGCAGCCT...CTGTTGAGGCTGGGAATTGAAATCTGAACCCTCTTGGAAAGCAGCAAGTACTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR TCA 90 bp CAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGGGAGCAGCCACAAACATGATCTTTaGCTCCTGTTCAAAGGGTAC +
Preference number: 4 (lower is better)
Translates to: QPTSSWPWKRVYAGFGSSHKHDL*LLFKGY
Trigger: GTACCCTTTGAACAGGAGTCAAAGATCATGTTTGTG...GCTGCTCCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR TCA 90 bp GGCTGTCATGAAAAGCCCACAGTCGGTGTCCCACTTCCCACACCATATCGTAGGCACAGTCAGCACAGGTaGACTCATCCAGCCTGTACT +
Preference number: 4 (lower is better)
Translates to: GCHEKPTVGVPLPTPYRRHSQHR*THPACT
Trigger: AGTACAGGCTGGATGAGTTCACCTGTGCTGACTGTG...CCTACGATATGGTGTGGGAAGTGGGACACCGACTGTGGGCTTTTCATGACAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR CCA 90 bp CAGCAGAAGACTGAGGTAAGAGTACTTGCTGCTTTCCAAGAGGGTTCAGATTTCACCCCAGGCAGCAGATaGGGGTCGCGGTTGATGCGG +
Preference number: 4 (lower is better)
Translates to: QQKTEVRVLAAFQEGSDFTPGSR*GSRLMR
Trigger: CCGCATCAACCGCGACCCCCATCTGCTGCCTGGGGT...GAAATCTGAACCCTCTTGGAAAGCAGCAAGTACTCTTACCTCAGTCTTCTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
3UTR CAA 72 bp GATGGCCTCGCCACAGGCATGTCTGCACCCCTTTCCTaGTGGGCTCCTTTCTGGCTACATATATTACCTGTG +
Preference number: 4 (lower is better)
Translates to: DGLATGMSAPLS*WAPFWLHILPV
Trigger: CACAGGTAATATATGTAGCCAGAAAGGAGCCCACAAGGAAAGGGGTGCAGACATGCCTGTGGCGAGGCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR TCA 90 bp GGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGATAATCACTGGAGGTaGCGTAGAAGATGGGAAGGA +
Preference number: 4 (lower is better)
Translates to: GVGVIARLQPTSSWPWKRDNHWR*RRRWEG
Trigger: TCCTTCCCATCTTCTACGTCACCTCCAGTGATTATC...CCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp GGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTAGTCTGGGGGCACGGTaGGAGCAAAGTAATCATAAC +
Preference number: 4 (lower is better)
Translates to: GRCYCKAPANFLLAMEEGSLGAR*EQSNHN
Trigger: GTTATGATTACTTTGCTCGCACCGTGCCCCCAGACT...ACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp GCTGGTTTTCTCACACAGGACTTTGTCCCTGCCTGTTACCGAAGCCCTGCCTGCTGGAAGAGGATAATGTaGAGCTTGGGTGCAAAGAGG +
Preference number: 4 (lower is better)
Translates to: AGFLTQDFVPACYRSPACWKRIM*SLGAKR
Trigger: CCTCTTTGCACCCAAGCTGCACATTATCCTCTTCCA...GCAGGCAGGGCTTCGGTAACAGGCAGGGACAAAGTCCTGTGTGAGAAAACCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR CCA 90 bp TTCCTTGTGGGCTCCTTTCTGGCTACATATATTACCTGTGAACAGGTAACATTCGGTTGGCGCTGGCCCTaGGGGCAGCACTGCCAAAGC +
Preference number: 4 (lower is better)
Translates to: FLVGSFLATYITCEQVTFGWRWP*GQHCQS
Trigger: GCTTTGGCAGTGCTGCCCCCAGGGCCAGCGCCAACC...GAATGTTACCTGTTCACAGGTAATATATGTAGCCAGAAAGGAGCCCACAAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR TCA 90 bp AGAGTACTTGCTGCTTTCCAAGAGGGTTCAGATTTCAATTCCCAGCCTCAACAGCATCAGCCCCACGGCTaGGTGAGGCACGCACAAAGT +
Preference number: 4 (lower is better)
Translates to: RVLAAFQEGSDFNSQPQQHQPHG*VRHAQS
Trigger: ACTTTGTGCGTGCCTCACTCAGCCGTGGGGCTGATG...CTGTTGAGGCTGGGAATTGAAATCTGAACCCTCTTGGAAAGCAGCAAGTACTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR TCA 90 bp ATACAAAATAAACCACGGGACAAACTACTGGGTAAGGAGGGAGGGACTGGTCCCCTCTTCACCTCATTCTaGAGGCAGGGCTCGCTACAG +
Preference number: 4 (lower is better)
Translates to: IQNKPRDKLLGKEGGTGPLFTSF*RQGSLQ
Trigger: CTGTAGCGAGCCCTGCCTTCAGAATGAGGTGAAGAG...GGGACCAGTCCCTCCCTCCTTACCCAGTAGTTTGTCCCGTGGTTTATTTTGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR TCA 90 bp CAGCAGAAGACTGAGGTAAGAGTACTTGCTGCTTTCCAAGAGGGTTCAGATTTCGCGTGCAGAGAGCGATaGGGAGCACGTTGTAGGCCA +
Preference number: 4 (lower is better)
Translates to: QQKTEVRVLAAFQEGSDFACRER*GARCRP
Trigger: TGGCCTACAACGTGCTCCTCATCGCTCTCTGCACGC...GAAATCTGAACCCTCTTGGAAAGCAGCAAGTACTCTTACCTCAGTCTTCTGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR TCA 90 bp GCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGATAATCACTGGAGGTaGCGTAGAAGATGGGAAGGA +
Preference number: 4 (lower is better)
Translates to: AWGRCYCKAPANFLLAMEDNHWR*RRRWEG
Trigger: TCCTTCCCATCTTCTACGTCACCTCCAGTGATTATC...TTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR TCA 90 bp CTGGTTTTCTCACACAGGACTTTGTCCCTGCCTGTTACCGAAGCCCTGCCTGCAGATAATCACTGGAGGTaGCGTAGAAGATGGGAAGGA +
Preference number: 4 (lower is better)
Translates to: LVFSHRTLSLPVTEALPADNHWR*RRRWEG
Trigger: TCCTTCCCATCTTCTACGTCACCTCCAGTGATTATC...TGCAGGCAGGGCTTCGGTAACAGGCAGGGACAAAGTCCTGTGTGAGAAAACCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR GCA 90 bp CTGCATGCATGTGGTGCAGAAGCCCTACATACACTCCTTTCATCCCAGTACTTGAATGTGCAGCTTGGGTaGAAAGAGGCAGCCGAGCAC +
Preference number: 4 (lower is better)
Translates to: LHACGAEALHTLLSSQYLNVQLG*KEAAEH
Trigger: GTGCTCGGCTGCCTCTTTGCACCCAAGCTGCACATT...CAAGTACTGGGATGAAAGGAGTGTATGTAGGGCTTCTGCACCACATGCATGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR GCA 90 bp CATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGTGGAAGAGGATAATGTaGAGCTTGGGTGCAAAGAGG +
Preference number: 4 (lower is better)
Translates to: HGVGVIARLQPTSSWPWKWKRIM*SLGAKR
Trigger: CCTCTTTGCACCCAAGCTGCACATTATCCTCTTCCA...CTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR GCA 90 bp CAGCAGAAGACTGAGGTAAGAGTACTTGCTGCTTTCCAAGAGGGTTCAGATTTCAAAGCGGCTGGTAGGTaGCCGGTGGCTCACCACGTT +
Preference number: 4 (lower is better)
Translates to: QQKTEVRVLAAFQEGSDFKAAGR*PVAHHV
Trigger: AACGTGGTGAGCCACCGGGCACCTACCAGCCGCTTT...GAAATCTGAACCCTCTTGGAAAGCAGCAAGTACTCTTACCTCAGTCTTCTGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR CCA 90 bp CAGCAGAAGACTGAGGTAAGAGTACTTGCTGCTTTCCAAGAGGGTTCAGATTTCCCAACACAAAGAGGGTaGCCAGGGCACCTAGGCAGG +
Preference number: 4 (lower is better)
Translates to: QQKTEVRVLAAFQEGSDFPTQRG*PGHLGR
Trigger: CCTGCCTAGGTGCCCTGGCCACCCTCTTTGTGTTGG...GAAATCTGAACCCTCTTGGAAAGCAGCAAGTACTCTTACCTCAGTCTTCTGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR CCA 90 bp CTGCATGCATGTGGTGCAGAAGCCCTACATACACTCCTTTCATCCCAGTACTTGGCAACAATGAGCAGCTaGCCCGAGATAAGTGCCAGG +
Preference number: 4 (lower is better)
Translates to: LHACGAEALHTLLSSQYLATMSS*PEISAR
Trigger: CCTGGCACTTATCTCGGGCCAGCTGCTCATTGTTGC...CAAGTACTGGGATGAAAGGAGTGTATGTAGGGCTTCTGCACCACATGCATGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR CCA 90 bp CATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGCACCACGTTCTTCTGTaGCTGGAAGAGGATAATGTG +
Preference number: 4 (lower is better)
Translates to: HGVGVIARLQPTSSWPWKHHVLL*LEEDNV
Trigger: CACATTATCCTCTTCCAGCCACAGAAGAACGTGGTG...CTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR TCA 90 bp TCCCAGGCCTGGCAAACACGGGGCATAGCTACAAGGATAGTTACTGGCCAATGCACACATACGTCCAGTTaGAAAAGCGGAGAATCTCAG +
Preference number: 4 (lower is better)
Translates to: SQAWQTRGIATRIVTGQCTHTSS*KSGESQ
Trigger: CTGAGATTCTCCGCTTTTTCAACTGGACGTATGTGT...GCATTGGCCAGTAACTATCCTTGTAGCTATGCCCCGTGTTTGCCAGGCCTGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR TCA 90 bp GGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACACACATACGTCCAGTTaGAAAAGCGGAGAATCTCAG +
Preference number: 4 (lower is better)
Translates to: GVIARLQPTSSWPWKRVYTHTSS*KSGESQ
Trigger: CTGAGATTCTCCGCTTTTTCAACTGGACGTATGTGT...GTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CCA 90 bp AGAGTACTTGCTGCTTTCCAAGAGGGTTCAGATTTCAATTCCCAGCCTCAACAGGGCTTGGAAGAAGTCTaGGGGCACGGTGCGAGCAAA +
Preference number: 4 (lower is better)
Translates to: RVLAAFQEGSDFNSQPQQGLEEV*GHGASK
Trigger: TTTGCTCGCACCGTGCCCCCAGACTTCTTCCAAGCC...CTGTTGAGGCTGGGAATTGAAATCTGAACCCTCTTGGAAAGCAGCAAGTACTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR TCA 90 bp TGTGATGCTCAGCTACATAGTAAGTTTGAGGCAACCTTGGTATACATAAGGCCCGATGGGGGTCGCGGTTaGTGCGGTCCAGTGCAAAAA +
Preference number: 4 (lower is better)
Translates to: CDAQLHSKFEATLVYIRPDGGRG*CGPVQK
Trigger: TTTTTGCACTGGACCGCATCAACCGCGACCCCCATC...GGGCCTTATGTATACCAAGGTTGCCTCAAACTTACTATGTAGCTGAGCATCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR GCA 90 bp CAGCAGAAGACTGAGGTAAGAGTACTTGCTGCTTTCCAAGAGGGTTCAGATTTCAATGTGCAGCTTGGGTaGAAAGAGGCAGCCGAGCAC +
Preference number: 4 (lower is better)
Translates to: QQKTEVRVLAAFQEGSDFNVQLG*KEAAEH
Trigger: GTGCTCGGCTGCCTCTTTGCACCCAAGCTGCACATT...GAAATCTGAACCCTCTTGGAAAGCAGCAAGTACTCTTACCTCAGTCTTCTGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR CCA 90 bp GGCACTGCATGCATGTGGTGCAGAAGCCCTACATACACTCCTTTCATCCCAGTACACCACGTTCTTCTGTaGCTGGAAGAGGATAATGTG +
Preference number: 4 (lower is better)
Translates to: GTACMWCRSPTYTPFIPVHHVLL*LEEDNV
Trigger: CACATTATCCTCTTCCAGCCACAGAAGAACGTGGTG...TACTGGGATGAAAGGAGTGTATGTAGGGCTTCTGCACCACATGCATGCAGTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR CCA 90 bp AGAGTACTTGCTGCTTTCCAAGAGGGTTCAGATTTCAATTCCCAGCCTCAACAGGATTGGCCACCTGGATaGAGACATCACTGTAGGAGC +
Preference number: 4 (lower is better)
Translates to: RVLAAFQEGSDFNSQPQQDWPPG*RHHCRS
Trigger: GCTCCTACAGTGATGTCTCCATCCAGGTGGCCAATC...CTGTTGAGGCTGGGAATTGAAATCTGAACCCTCTTGGAAAGCAGCAAGTACTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR TCA 90 bp GGCACTGCATGCATGTGGTGCAGAAGCCCTACATACACTCCTTTCATCCCAGTACACAAACATGATCTTTaGCTCCTGTTCAAAGGGTAC +
Preference number: 4 (lower is better)
Translates to: GTACMWCRSPTYTPFIPVHKHDL*LLFKGY
Trigger: GTACCCTTTGAACAGGAGTCAAAGATCATGTTTGTG...TACTGGGATGAAAGGAGTGTATGTAGGGCTTCTGCACCACATGCATGCAGTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR GCA 90 bp AGAGTACTTGCTGCTTTCCAAGAGGGTTCAGATTTCAATTCCCAGCCTCAACAGTGGAAGAGGATAATGTaGAGCTTGGGTGCAAAGAGG +
Preference number: 4 (lower is better)
Translates to: RVLAAFQEGSDFNSQPQQWKRIM*SLGAKR
Trigger: CCTCTTTGCACCCAAGCTGCACATTATCCTCTTCCA...CTGTTGAGGCTGGGAATTGAAATCTGAACCCTCTTGGAAAGCAGCAAGTACTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS TCA 90 bp GACGCTGGGTGGCTGCAAGCAGCTCACGGGCATCCTCTGACCGGGTaGAGAGCACAGCCACACGGGCGCTGGGCTTCTGCAACAGGGCTC +
Preference number: 5 (lower is better)
Translates to: DAGWLQAAHGHPLTG*RAQPHGRWASATGL
Trigger: GAGCCCTGTTGCAGAAGCCCAGCGCCCGTGTGGCTGTGCTCTTCACCCGGTCAGAGGATGCCCGTGAGCTGCTTGCAGCCACCCAGCGTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS TCA 90 bp AGGAGCCGTCAGGACAGATGTGGCGTGAGCCATCAGCCCCACGGCTaGGTGAGGCACGCACAAAGTCCAGGGCCTGCTCCAGGGCGTGTG +
Preference number: 5 (lower is better)
Translates to: RSRQDRCGVSHQPHG*VRHAQSPGPAPGRV
Trigger: CACACGCCCTGGAGCAGGCCCTGGACTTTGTGCGTGCCTCACTCAGCCGTGGGGCTGATGGCTCACGCCACATCTGTCCTGACGGCTCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS GCA 90 bp GTACGGCCCGCAGAGAGTGGGCGGCGCAGTCTCGCTGCCGGAAGCTaGAACGGAACCTCTCCTCCCAGAACTCACGGAACCAAGGGTTCC +
Preference number: 5 (lower is better)
Translates to: VRPAESGRRSLAAGS*NGTSPPRTHGTKGS
Trigger: GGAACCCTTGGTTCCGTGAGTTCTGGGAGGAGAGGTTCCGTTGCAGCTTCCGGCAGCGAGACTGCGCCGCCCACTCTCTGCGGGCCGTAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS GCA 90 bp CACCACTTCCCGCCGCTCAGGGGCTGTCTCCTTGCCTATGCCAGGTaGCTCCACCACCAGCCAGGCAGCAACAATGAGCAGCTGGCCCGA +
Preference number: 5 (lower is better)
Translates to: HHFPPLRGCLLAYAR*LHHQPGSNNEQLAR
Trigger: TCGGGCCAGCTGCTCATTGTTGCTGCCTGGCTGGTGGTGGAGGCACCTGGCATAGGCAAGGAGACAGCCCCTGAGCGGCGGGAAGTGGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR CAA 90 bp GTTACCGAAGCCCTGCCTGCAGCAGCCATATGCTTCCAGCTCACTGCACAGCGCTCCCGCCCCGAGGCCTaGACCACGGGTGTGGCGTTA +
Preference number: 5 (lower is better)
Translates to: VTEALPAAAICFQLTAQRSRPEA*TTGVAL
Trigger: TAACGCCACACCCGTGGTCAAGGCCTCGGGGCGGGA...GCGCTGTGCAGTGAGCTGGAAGCATATGGCTGCTGCAGGCAGGGCTTCGGTAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS GCA 90 bp CCATCAGCCCCACGGCTGAGTGAGGCACGCACAAAGTCCAGGGCCTaGTCCAGGGCGTGTGTATCCTTGGAGCAGCTGTCGAGGATGTGC +
Preference number: 5 (lower is better)
Translates to: PSAPRLSEARTKSRA*SRACVSLEQLSRMC
Trigger: GCACATCCTCGACAGCTGCTCCAAGGATACACACGCCCTGGAGCAGGCCCTGGACTTTGTGCGTGCCTCACTCAGCCGTGGGGCTGATGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS GCA 90 bp TGTTCAAAGGGTACGGCCCGCAGAGAGTGGGCGGCGCAGTCTCGCTaGCGGAAGCTGCAACGGAACCTCTCCTCCCAGAACTCACGGAAC +
Preference number: 5 (lower is better)
Translates to: CSKGTARREWAAQSR*RKLQRNLSSQNSRN
Trigger: GTTCCGTGAGTTCTGGGAGGAGAGGTTCCGTTGCAGCTTCCGGCAGCGAGACTGCGCCGCCCACTCTCTGCGGGCCGTACCCTTTGAACA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS GCA 90 bp GTTGGCGCTGGCCCTGGGGGCAGCACTGCCAAAGCGGCTGGTAGGTaGCCGGTGGCTCACCACGTTCTTCTGTGGCTGGAAGAGGATAAT +
Preference number: 5 (lower is better)
Translates to: VGAGPGGSTAKAAGR*PVAHHVLLWLEEDN
Trigger: ATTATCCTCTTCCAGCCACAGAAGAACGTGGTGAGCCACCGGGCACCTACCAGCCGCTTTGGCAGTGCTGCCCCCAGGGCCAGCGCCAAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
ENSMUST00000201681.2
CDS CCA 90 bp ATTAACAGGTCCACACTCCTCTGCTGGGCCACCCTTCTGGTGCACTaGGAACAGCCCACCCAGCACCAGGTCCCCCTCCAGGGTCAGCAC +
Preference number: 5 (lower is better)
Translates to: INRSTLLCWATLLVH*EQPTQHQVPLQGQH
Trigger: GTGCTGACCCTGGAGGGGGACCTGGTGCTGGGTGGGCTGTTCCCAGTGCACCAGAAGGGTGGCCCAGCAGAGGAGTGTGGACCTGTTAAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CAA 90 bp AGCTCACAACCAACTGTAGCTCCAGACCTAGGGGATCTGGTCGCCCTCCTCTGGTCCCGCCCCGAGGCCTaGACCACGGGTGTGGCGTTA +
Preference number: 5 (lower is better)
Translates to: SSQPTVAPDLGDLVALLWSRPEA*TTGVAL
Trigger: TAACGCCACACCCGTGGTCAAGGCCTCGGGGCGGGA...CCAGAGGAGGGCGACCAGATCCCCTAGGTCTGGAGCTACAGTTGGTTGTGAGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR CAA 90 bp AGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGGGCTGGGATCCAGACCCTaGACCAAGGTTGGCGCTGGC +
Preference number: 5 (lower is better)
Translates to: RLQPTSSWPWKRVYAGFGLGSRP*TKVGAG
Trigger: GCCAGCGCCAACCTTGGTCAAGGGTCTGGATCCCAG...CCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS GCA 90 bp GAGAGCGATGAGGAGCACGTTGTAGGCCAGCGAGCCAAGCATGCTTaGGTCACGGTGGTTACAGCGCAAGGTCACCACTTCCCGCCGCTC +
Preference number: 5 (lower is better)
Translates to: ESDEEHVVGQRAKHA*VTVVTAQGHHFPPL
Trigger: GAGCGGCGGGAAGTGGTGACCTTGCGCTGTAACCACCGTGACGCAAGCATGCTTGGCTCGCTGGCCTACAACGTGCTCCTCATCGCTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS CCA 90 bp GCGCTGTATGCCACGGTGCTCATTAACAGGTCCACACTCCTCTGCTaGGCCACCCTTCTGGTGCACTGGGAACAGCCCACCCAGCACCAG +
Preference number: 5 (lower is better)
Translates to: ALYATVLINRSTLLC*ATLLVHWEQPTQHQ
Trigger: CTGGTGCTGGGTGGGCTGTTCCCAGTGCACCAGAAGGGTGGCCCAGCAGAGGAGTGTGGACCTGTTAATGAGCACCGTGGCATACAGCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS TCA 90 bp AGACGCCTCCCAGCAGAATGTAGCAAAGCTCCCGCCCCGAGGCCTTaGCCACGGGTGTGGCGTTATGCCGCACGAAGACACCCAACACAA +
Preference number: 5 (lower is better)
Translates to: RRLPAECSKAPAPRP*PRVWRYAARRHPTQ
Trigger: TTGTGTTGGGTGTCTTCGTGCGGCATAACGCCACACCCGTGGTCAAGGCCTCGGGGCGGGAGCTTTGCTACATTCTGCTGGGAGGCGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR CAA 90 bp AGAGGGTCTACGCTGGGTTCGGGAGCAGCCATGTCAGGGCAGGAGTGTGGGATCAGGGCGTGTGTATCCTaGGAGCAGCTGTCGAGGATG +
Preference number: 5 (lower is better)
Translates to: RGSTLGSGAAMSGQECGIRACVS*EQLSRM
Trigger: CATCCTCGACAGCTGCTCCAAGGATACACACGCCCT...GATCCCACACTCCTGCCCTGACATGGCTGCTCCCGAACCCAGCGTAGACCCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CAA 90 bp AACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGGGAGCAGCCATGTCAGGTGAAGCTGGCGTaGAGACGCTGGGTGGCTGCA +
Preference number: 5 (lower is better)
Translates to: NFLLAMEEGLRWVREQPCQVKLA*RRWVAA
Trigger: TGCAGCCACCCAGCGTCTCAACGCCAGCTTCACCTG...ACATGGCTGCTCCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS CCA 90 bp AACATGATCTTTGACTCCTGTTCAAAGGGTACGGCCCGCAGAGAGTaGGCGGCGCAGTCTCGCTGCCGGAAGCTGCAACGGAACCTCTCC +
Preference number: 5 (lower is better)
Translates to: NMIFDSCSKGTARRE*AAQSRCRKLQRNLS
Trigger: GGAGAGGTTCCGTTGCAGCTTCCGGCAGCGAGACTGCGCCGCCCACTCTCTGCGGGCCGTACCCTTTGAACAGGAGTCAAAGATCATGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CAA 90 bp GGGCAGCTCACAACCAACTGTAGCTCCAGACCTAGGGGATCTGGTCGCCCTCCTAGGGCGTGTGTATCCTaGGAGCAGCTGTCGAGGATG +
Preference number: 5 (lower is better)
Translates to: GQLTTNCSSRPRGSGRPPRACVS*EQLSRM
Trigger: CATCCTCGACAGCTGCTCCAAGGATACACACGCCCT...AGGAGGGCGACCAGATCCCCTAGGTCTGGAGCTACAGTTGGTTGTGAGCTGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CAA 90 bp GCTGGTTTTCTCACACAGGACTTTGTCCCTGCCTGTTACCGAAGCCCTGCCTGCTCAGGGGCTGTCTCCTaGCCTATGCCAGGTGCCTCC +
Preference number: 5 (lower is better)
Translates to: AGFLTQDFVPACYRSPACSGAVS*PMPGAS
Trigger: GGAGGCACCTGGCATAGGCAAGGAGACAGCCCCTGA...GCAGGCAGGGCTTCGGTAACAGGCAGGGACAAAGTCCTGTGTGAGAAAACCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR CAA 90 bp AGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGGGAGGATAATGTGCAGCTaGGGTGCAAAGAGGCAGCCG +
Preference number: 5 (lower is better)
Translates to: RLQPTSSWPWKRVYAGFGRIMCS*GAKRQP
Trigger: CGGCTGCCTCTTTGCACCCAAGCTGCACATTATCCT...CCCGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS GCA 90 bp CTCCGGGCACTTGCGGGTCTTCTGGTAGCGATAGCGCCCATTGCCTaGCCGCAGATAGGTGAAGATGTTGTAGCGGCCAATACCATCTCC +
Preference number: 5 (lower is better)
Translates to: LRALAGLLVAIAPIA*PQIGEDVVAANTIS
Trigger: GGAGATGGTATTGGCCGCTACAACATCTTCACCTATCTGCGGGCAGGCAATGGGCGCTATCGCTACCAGAAGACCCGCAAGTGCCCGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201681.2
CDS-3UTR CAA 90 bp CCTGTTACCGAAGCCCTGCCTGCAGCAGCCATATGCTTCCAGCTCACTGCACAGAGATGGGGGTCGCGGTaGATGCGGTCCAGTGCAAAA +
Preference number: 5 (lower is better)
Translates to: PVTEALPAAAICFQLTAQRWGSR*MRSSAK
Trigger: TTTTGCACTGGACCGCATCAACCGCGACCCCCATCT...CTGTGCAGTGAGCTGGAAGCATATGGCTGCTGCAGGCAGGGCTTCGGTAACAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CAA 90 bp GGCAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTTCCTCCTGGCCAAGATGGGGGTCGCGGTaGATGCGGTCCAGTGCAAAA +
Preference number: 5 (lower is better)
Translates to: GRHGVGVIARLQPTSSWPRWGSR*MRSSAK
Trigger: TTTTGCACTGGACCGCATCAACCGCGACCCCCATCT...TGGCCAGGAGGAAGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CAA 90 bp GGTGACTTTGGGGGCAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTAGCCATGGCCTTGGCTaGGAAGAAGTCTGGGGGCAC +
Preference number: 5 (lower is better)
Translates to: GDFGGRHGVGVIARLQPTSHGLG*EEVWGH
Trigger: GTGCCCCCAGACTTCTTCCAAGCCAAGGCCATGGCT...AGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTGCCCCCAAAGTCACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CAA 90 bp GTAGGTGACTTTGGGGGCAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACGGCCGTGGAGGGCTaGGCGATGAAGATGAAGGTC +
Preference number: 5 (lower is better)
Translates to: VGDFGGRHGVGVIARLQPTAVEG*AMKMKV
Trigger: GACCTTCATCTTCATCGCCAAGCCCTCCACGGCCGT...TGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTGCCCCCAAAGTCACCTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CAA 90 bp TCCCAGGCCTGGCAAACACGGGGCATAGCTACAAGGATAGTTACTGGCCAATGCTCAGGGGCTGTCTCCTaGCCTATGCCAGGTGCCTCC +
Preference number: 5 (lower is better)
Translates to: SQAWQTRGIATRIVTGQCSGAVS*PMPGAS
Trigger: GGAGGCACCTGGCATAGGCAAGGAGACAGCCCCTGA...GCATTGGCCAGTAACTATCCTTGTAGCTATGCCCCGTGTTTGCCAGGCCTGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CAA 90 bp CAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGAGGATAATGTGCAGCTaGGGTGCAAAGAGGCAGCCG +
Preference number: 5 (lower is better)
Translates to: QGSSQLPPGHGRGSTLGSRIMCS*GAKRQP
Trigger: CGGCTGCCTCTTTGCACCCAAGCTGCACATTATCCT...CGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CAA 90 bp AGAGGGTCTACGCTGGGTTCGGGAGCAGCCATGTCAGGGCAGGAGTGTGGGATCAAAGCGACGATGTTGTaGAGTCTACCACCTCACGGC +
Preference number: 5 (lower is better)
Translates to: RGSTLGSGAAMSGQECGIKATML*SLPPHG
Trigger: GCCGTGAGGTGGTAGACTCAACAACATCGTCGCTTT...GATCCCACACTCCTGCCCTGACATGGCTGCTCCCGAACCCAGCGTAGACCCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS GCA 90 bp TGGGGAGGCCCATGGGATGATGCTAGTATCCAGAGTCAGACCTTCTaGCCAGTAGCCTACCTTCTGGTAGCGATAGCGCCCATTGCCTGC +
Preference number: 5 (lower is better)
Translates to: WGGPWDDASIQSQTF*PVAYLLVAIAPIAC
Trigger: GCAGGCAATGGGCGCTATCGCTACCAGAAGGTAGGCTACTGGGCAGAAGGTCTGACTCTGGATACTAGCATCATCCCATGGGCCTCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CAA 90 bp CTGGTTTTCTCACACAGGACTTTGTCCCTGCCTGTTACCGAAGCCCTGCCTGCAACGGCCGTGGAGGGCTaGGCGATGAAGATGAAGGTC +
Preference number: 5 (lower is better)
Translates to: LVFSHRTLSLPVTEALPATAVEG*AMKMKV
Trigger: GACCTTCATCTTCATCGCCAAGCCCTCCACGGCCGT...TGCAGGCAGGGCTTCGGTAACAGGCAGGGACAAAGTCCTGTGTGAGAAAACCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR CAA 90 bp CAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTCGAAAGCGACGATGTTGTaGAGTCTACCACCTCACGGC +
Preference number: 5 (lower is better)
Translates to: QGSSQLPPGHGRGSTLGSKATML*SLPPHG
Trigger: GCCGTGAGGTGGTAGACTCAACAACATCGTCGCTTT...CGAACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS-3UTR CAA 90 bp GCTGGTTTTCTCACACAGGACTTTGTCCCTGCCTGTTACCGAAGCCCTGCCTGCAGGATAATGTGCAGCTaGGGTGCAAAGAGGCAGCCG +
Preference number: 5 (lower is better)
Translates to: AGFLTQDFVPACYRSPACRIMCS*GAKRQP
Trigger: CGGCTGCCTCTTTGCACCCAAGCTGCACATTATCCT...GCAGGCAGGGCTTCGGTAACAGGCAGGGACAAAGTCCTGTGTGAGAAAACCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS-3UTR CAA 90 bp TCTGATTGTTGGTTCCCTTTTGCCAAGCACTCACCCTGGCTCTGGCTTGTCCAACTGGGATCCAGACCCTaGACCAAGGTTGGCGCTGGC +
Preference number: 5 (lower is better)
Translates to: SDCWFPFAKHSPWLWLVQLGSRP*TKVGAG
Trigger: GCCAGCGCCAACCTTGGTCAAGGGTCTGGATCCCAG...TTGGACAAGCCAGAGCCAGGGTGAGTGCTTGGCAAAAGGGAACCAACAATCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CAA 90 bp TGCAAGGCTCCAGCCAACTTCCTCCTGGCCATGGAAGAGGGTCTACGCTGGGTTACCACCTCACGGCCATaGCAAACAGTAGGAACAAGC +
Preference number: 5 (lower is better)
Translates to: CKAPANFLLAMEEGLRWVTTSRP*QTVGTS
Trigger: GCTTGTTCCTACTGTTTGCAATGGCCGTGAGGTGGT...AACCCAGCGTAGACCCTCTTCCATGGCCAGGAGGAAGTTGGCTGGAGCCTTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS TCA 90 bp GGGTCTTCTGGTAGCGATAGCGCCCATTGCCTGCCCGCAGATAGGTaGAGATGTTGTAGCGGCCAATACCATCTCCAAAGCGGTCAAAGC +
Preference number: 5 (lower is better)
Translates to: GSSGSDSAHCLPADR*RCCSGQYHLQSGQS
Trigger: GCTTTGACCGCTTTGGAGATGGTATTGGCCGCTACAACATCTTCACCTATCTGCGGGCAGGCAATGGGCGCTATCGCTACCAGAAGACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201681.2
CDS GCA 90 bp TTCTGCCCAGTAGCCTACCTTCTGGTAGCGATAGCGCCCATTGCCTaGCCGCAGATAGGTGAAGATGTTGTAGCGGCCAATACCATCTCC +
Preference number: 5 (lower is better)
Translates to: FCPVAYLLVAIAPIA*PQIGEDVVAANTIS
Trigger: GGAGATGGTATTGGCCGCTACAACATCTTCACCTATCTGCGGGCAGGCAATGGGCGCTATCGCTACCAGAAGGTAGGCTACTGGGCAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CAA 90 bp CTGCATGCATGTGGTGCAGAAGCCCTACATACACTCCTTTCATCCCAGTACTTGCAGGTGAAGCTGGCGTaGAGACGCTGGGTGGCTGCA +
Preference number: 5 (lower is better)
Translates to: LHACGAEALHTLLSSQYLQVKLA*RRWVAA
Trigger: TGCAGCCACCCAGCGTCTCAACGCCAGCTTCACCTG...CAAGTACTGGGATGAAAGGAGTGTATGTAGGGCTTCTGCACCACATGCATGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS TCA 90 bp CTACCTTCTGGTAGCGATAGCGCCCATTGCCTGCCCGCAGATAGGTaGAGATGTTGTAGCGGCCAATACCATCTCCAAAGCGGTCAAAGC +
Preference number: 5 (lower is better)
Translates to: LPSGSDSAHCLPADR*RCCSGQYHLQSGQS
Trigger: GCTTTGACCGCTTTGGAGATGGTATTGGCCGCTACAACATCTTCACCTATCTGCGGGCAGGCAATGGGCGCTATCGCTACCAGAAGGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CAA 90 bp GTCTCTGGCTGGTTTTCTCACACAGGACTTTGTCCCTGCCTGTTACCGAAGCCCACCACCTCACGGCCATaGCAAACAGTAGGAACAAGC +
Preference number: 5 (lower is better)
Translates to: VSGWFSHTGLCPCLLPKPTTSRP*QTVGTS
Trigger: GCTTGTTCCTACTGTTTGCAATGGCCGTGAGGTGGT...GGGCTTCGGTAACAGGCAGGGACAAAGTCCTGTGTGAGAAAACCAGCCAGAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS-3UTR CAA 90 bp GGTGACTTTGGGGGCAGGCATGGGGTAGGTGTTATTGCAAGGCTCCAGCCAACTGACACATACGTCCAGTaGAAAAAGCGGAGAATCTCA +
Preference number: 5 (lower is better)
Translates to: GDFGGRHGVGVIARLQPTDTYVQ*KKRRIS
Trigger: TGAGATTCTCCGCTTTTTCAACTGGACGTATGTGTC...AGTTGGCTGGAGCCTTGCAATAACACCTACCCCATGCCTGCCCCCAAAGTCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS CCA 72 bp GGGCTCGCACCACACCCTCGAAGGCTGCGCGGCTCATaGCACGGCCCACCTTCTCCGAAGTGGCCACGCAGA +
Preference number: 6 (lower is better)
Translates to: GLAPHPRRLRGS*HGPPSPKWPRR
Trigger: TCTGCGTGGCCACTTCGGAGAAGGTGGGCCGTGCCATGAGCCGCGCAGCCTTCGAGGGTGTGGTGCGAGCCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS GCA 72 bp GGTACGGCCCGCAGAGAGTGGGCGGCGCAGTCTCGCTaGCGGAAGCTGCAACGGAACCTCTCCTCCCAGAAC +
Preference number: 6 (lower is better)
Translates to: GTARREWAAQSR*RKLQRNLSSQN
Trigger: GTTCTGGGAGGAGAGGTTCCGTTGCAGCTTCCGGCAGCGAGACTGCGCCGCCCACTCTCTGCGGGCCGTACC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS GCA 72 bp GGCCCTGGGGGCAGCACTGCCAAAGCGGCTGGTAGGTaGCCGGTGGCTCACCACGTTCTTCTGTGGCTGGAA +
Preference number: 6 (lower is better)
Translates to: GPGGSTAKAAGR*PVAHHVLLWLE
Trigger: TTCCAGCCACAGAAGAACGTGGTGAGCCACCGGGCACCTACCAGCCGCTTTGGCAGTGCTGCCCCCAGGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
ENSMUST00000201681.2
CDS TCA 72 bp TGGCTGCAAGCAGCTCACGGGCATCCTCTGACCGGGTaGAGAGCACAGCCACACGGGCGCTGGGCTTCTGCA +
Preference number: 6 (lower is better)
Translates to: WLQAAHGHPLTG*RAQPHGRWASA
Trigger: TGCAGAAGCCCAGCGCCCGTGTGGCTGTGCTCTTCACCCGGTCAGAGGATGCCCGTGAGCTGCTTGCAGCCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS GCA 72 bp AGGGCGTGTGTATCCTTGGAGCAGCTGTCGAGGATGTaGGCGCCCAAACGCACCCCAGGCAGCAGATGGGGG +
Preference number: 6 (lower is better)
Translates to: RACVSLEQLSRM*APKRTPGSRWG
Trigger: CCCCCATCTGCTGCCTGGGGTGCGTTTGGGCGCGCACATCCTCGACAGCTGCTCCAAGGATACACACGCCCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS GCA 72 bp CCGCCGCTCAGGGGCTGTCTCCTTGCCTATGCCAGGTaGCTCCACCACCAGCCAGGCAGCAACAATGAGCAG +
Preference number: 6 (lower is better)
Translates to: PPLRGCLLAYAR*LHHQPGSNNEQ
Trigger: CTGCTCATTGTTGCTGCCTGGCTGGTGGTGGAGGCACCTGGCATAGGCAAGGAGACAGCCCCTGAGCGGCGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS GCA 72 bp CCACTTCCCGCCGCTCAGGGGCTGTCTCCTTGCCTATaGCAGGTGCCTCCACCACCAGCCAGGCAGCAACAA +
Preference number: 6 (lower is better)
Translates to: PLPAAQGLSPCL*QVPPPPARQQQ
Trigger: TTGTTGCTGCCTGGCTGGTGGTGGAGGCACCTGGCATAGGCAAGGAGACAGCCCCTGAGCGGCGGGAAGTGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS TCA 72 bp CAGGACAGATGTGGCGTGAGCCATCAGCCCCACGGCTaGGTGAGGCACGCACAAAGTCCAGGGCCTGCTCCA +
Preference number: 6 (lower is better)
Translates to: QDRCGVSHQPHG*VRHAQSPGPAP
Trigger: TGGAGCAGGCCCTGGACTTTGTGCGTGCCTCACTCAGCCGTGGGGCTGATGGCTCACGCCACATCTGTCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS GCA 72 bp CCACGGCTGAGTGAGGCACGCACAAAGTCCAGGGCCTaGTCCAGGGCGTGTGTATCCTTGGAGCAGCTGTCG +
Preference number: 6 (lower is better)
Translates to: PRLSEARTKSRA*SRACVSLEQLS
Trigger: CGACAGCTGCTCCAAGGATACACACGCCCTGGAGCAGGCCCTGGACTTTGTGCGTGCCTCACTCAGCCGTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS CCA 72 bp TTTGACTCCTGTTCAAAGGGTACGGCCCGCAGAGAGTaGGCGGCGCAGTCTCGCTGCCGGAAGCTGCAACGG +
Preference number: 6 (lower is better)
Translates to: FDSCSKGTARRE*AAQSRCRKLQR
Trigger: CCGTTGCAGCTTCCGGCAGCGAGACTGCGCCGCCCACTCTCTGCGGGCCGTACCCTTTGAACAGGAGTCAAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS CAA 90 bp TTACAGCGCAAGGTCACCACTTCCCGCCGCTCAGGGGCTGTCTCCTaGCCTATGCCAGGTGCCTCCACCACCAGCCAGGCAGCAACAATG +
Preference number: 6 (lower is better)
Translates to: LQRKVTTSRRSGAVS*PMPGASTTSQAATM
Trigger: CATTGTTGCTGCCTGGCTGGTGGTGGAGGCACCTGGCATAGGCAAGGAGACAGCCCCTGAGCGGCGGGAAGTGGTGACCTTGCGCTGTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS TCA 72 bp CCAGCAGAATGTAGCAAAGCTCCCGCCCCGAGGCCTTaGCCACGGGTGTGGCGTTATGCCGCACGAAGACAC +
Preference number: 6 (lower is better)
Translates to: PAECSKAPAPRP*PRVWRYAARRH
Trigger: GTGTCTTCGTGCGGCATAACGCCACACCCGTGGTCAAGGCCTCGGGGCGGGAGCTTTGCTACATTCTGCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS CCA 72 bp GGGGCAGCACTGCCAAAGCGGCTGGTAGGTGCCCGGTaGCTCACCACGTTCTTCTGTGGCTGGAAGAGGATA +
Preference number: 6 (lower is better)
Translates to: GAALPKRLVGAR*LTTFFCGWKRI
Trigger: TATCCTCTTCCAGCCACAGAAGAACGTGGTGAGCCACCGGGCACCTACCAGCCGCTTTGGCAGTGCTGCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
ENSMUST00000201681.2
CDS GCA 72 bp TATGCCACGGTGCTCATTAACAGGTCCACACTCCTCTaGTGGGCCACCCTTCTGGTGCACTGGGAACAGCCC +
Preference number: 6 (lower is better)
Translates to: YATVLINRSTLL*WATLLVHWEQP
Trigger: GGGCTGTTCCCAGTGCACCAGAAGGGTGGCCCAGCAGAGGAGTGTGGACCTGTTAATGAGCACCGTGGCATA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS GCA 72 bp GAGGAGCACGTTGTAGGCCAGCGAGCCAAGCATGCTTaGGTCACGGTGGTTACAGCGCAAGGTCACCACTTC +
Preference number: 6 (lower is better)
Translates to: EEHVVGQRAKHA*VTVVTAQGHHF
Trigger: GAAGTGGTGACCTTGCGCTGTAACCACCGTGACGCAAGCATGCTTGGCTCGCTGGCCTACAACGTGCTCCTC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000200826.4
CDS GCA 72 bp GCAAAAAGCATGGCCTCTAGGCGCTGTATGCCACGGTaGTCATTAACAGGTCCACACTCCTCTGCTGGGCCA +
Preference number: 6 (lower is better)
Translates to: AKSMASRRCMPR*SLTGPHSSAGP
Trigger: TGGCCCAGCAGAGGAGTGTGGACCTGTTAATGAGCACCGTGGCATACAGCGCCTAGAGGCCATGCTTTTTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS GCA 72 bp TCCAAAGCGGTCAAAGCGGACCTCGTCGTCGGTATCTaGTGGGCGGAAGGGGGCATCAAACTTGACATTGAG +
Preference number: 6 (lower is better)
Translates to: SKAVKADLVVGI*WAEGGIKLDIE
Trigger: CTCAATGTCAAGTTTGATGCCCCCTTCCGCCCAGCAGATACCGACGACGAGGTCCGCTTTGACCGCTTTGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS GCA 72 bp CTTGCGGGTCTTCTGGTAGCGATAGCGCCCATTGCCTaGCCGCAGATAGGTGAAGATGTTGTAGCGGCCAAT +
Preference number: 6 (lower is better)
Translates to: LAGLLVAIAPIA*PQIGEDVVAAN
Trigger: ATTGGCCGCTACAACATCTTCACCTATCTGCGGGCAGGCAATGGGCGCTATCGCTACCAGAAGACCCGCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201681.2
CDS CCA 72 bp AAAGCGGTCAAAGCGGACCTCGTCGTCGGTATCTGCTaGGCGGAAGGGGGCATCAAACTTGACATTGAGCAC +
Preference number: 6 (lower is better)
Translates to: KAVKADLVVGIC*AEGGIKLDIEH
Trigger: GTGCTCAATGTCAAGTTTGATGCCCCCTTCCGCCCAGCAGATACCGACGACGAGGTCCGCTTTGACCGCTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS TCA 72 bp GGTAGCGATAGCGCCCATTGCCTGCCCGCAGATAGGTaGAGATGTTGTAGCGGCCAATACCATCTCCAAAGC +
Preference number: 6 (lower is better)
Translates to: GSDSAHCLPADR*RCCSGQYHLQS
Trigger: GCTTTGGAGATGGTATTGGCCGCTACAACATCTTCACCTATCTGCGGGCAGGCAATGGGCGCTATCGCTACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2
CDS GCA 72 bp GTAGCCTACCTTCTGGTAGCGATAGCGCCCATTGCCTaGCCGCAGATAGGTGAAGATGTTGTAGCGGCCAAT +
Preference number: 6 (lower is better)
Translates to: VAYLLVAIAPIA*PQIGEDVVAAN
Trigger: ATTGGCCGCTACAACATCTTCACCTATCTGCGGGCAGGCAATGGGCGCTATCGCTACCAGAAGGTAGGCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS GCA 72 bp CCATGGGATGATGCTAGTATCCAGAGTCAGACCTTCTaGCCAGTAGCCTACCTTCTGGTAGCGATAGCGCCC +
Preference number: 6 (lower is better)
Translates to: PWDDASIQSQTF*PVAYLLVAIAP
Trigger: GGGCGCTATCGCTACCAGAAGGTAGGCTACTGGGCAGAAGGTCTGACTCTGGATACTAGCATCATCCCATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023959.13
CDS CAA 72 bp AGCGACGATGTTGTTGAGTCTACCACCTCACGGCCATaGCAAACAGTAGGAACAAGCTGGGATCCAGACCCT +
Preference number: 6 (lower is better)
Translates to: SDDVVESTTSRP*QTVGTSWDPDP
Trigger: AGGGTCTGGATCCCAGCTTGTTCCTACTGTTTGCAATGGCCGTGAGGTGGTAGACTCAACAACATCGTCGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023959.13
ENSMUST00000201681.2