RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GRK6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074886

Ensembl transcript IDs: ENSMUST00000001115.16, ENSMUST00000099482.5, ENSMUST00000224118.2, ENSMUST00000224653.2, ENSMUST00000224995.2, ENSMUST00000225925.2

Found 221 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CACCAGACTTCTTTCTCCTACATCTCGCCTCTGCCTCGGATGGGCTaGCTGGGGCTCCCCACAGTCAGGCAGCAAGGCCAACCCATGGGG +
Preference number: 1 (lower is better)
Translates to: HQTSFSYISPLPRMG*LGLPTVRQQGQPMG
Trigger: CCCCATGGGTTGGCCTTGCTGCCTGACTGTGGGGAGCCCCAGGCAGCCCATCCGAGGCAGAGGCGAGATGTAGGAGAAAGAAGTCTGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
3UTR CCA 90 bp GCCTGGAGTTTGGCACTGGCTCCTCTTGCCAGCTCCTGGCTTTCCTaGCCAGGGCTAATTGCCCTGGGGTGTCCAGGTCCAGGGTGGAAT +
Preference number: 1 (lower is better)
Translates to: AWSLALAPLASSWLS*PGLIALGCPGPGWN
Trigger: ATTCCACCCTGGACCTGGACACCCCAGGGCAATTAGCCCTGGCCAGGAAAGCCAGGAGCTGGCAAGAGGAGCCAGTGCCAAACTCCAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR CCA 90 bp GCCCTAGAAGCCTGGAGTTTGGCACTGGCTCCTCTTGCCAGCTCCTaGCTTTCCTGGCCAGGGCTAATTGCCCTGGGGTGTCCAGGTCCA +
Preference number: 1 (lower is better)
Translates to: ALEAWSLALAPLASS*LSWPGLIALGCPGP
Trigger: TGGACCTGGACACCCCAGGGCAATTAGCCCTGGCCAGGAAAGCCAGGAGCTGGCAAGAGGAGCCAGTGCCAAACTCCAGGCTTCTAGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR CCA 90 bp GGGCAGAGGTCTGACCTGGCCCACTCTCTGCTTGCTCATCTCCACTaGGCCCTAGAAGCCTGGAGTTTGGCACTGGCTCCTCTTGCCAGC +
Preference number: 1 (lower is better)
Translates to: GQRSDLAHSLLAHLH*ALEAWSLALAPLAS
Trigger: GCTGGCAAGAGGAGCCAGTGCCAAACTCCAGGCTTCTAGGGCCCAGTGGAGATGAGCAAGCAGAGAGTGGGCCAGGTCAGACCTCTGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR CCA 90 bp GTGGCCTCAGTCCACAACAGGCAGGCACAAGTCTCACTTGGAGGTTaGTGGTGGCCAGTGCAGTGCTGTGGGCAGAGGTCTGACCTGGCC +
Preference number: 1 (lower is better)
Translates to: VASVHNRQAQVSLGG*WWPVQCCGQRSDLA
Trigger: GGCCAGGTCAGACCTCTGCCCACAGCACTGCACTGGCCACCACCAACCTCCAAGTGAGACTTGTGCCTGCCTGTTGTGGACTGAGGCCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR CCA 90 bp GTGGACACCAGACTTCTTTCTCCTACATCTCGCCTCTGCCTCGGATaGGCTGCCTGGGGCTCCCCACAGTCAGGCAGCAAGGCCAACCCA +
Preference number: 1 (lower is better)
Translates to: VDTRLLSPTSRLCLG*AAWGSPQSGSKANP
Trigger: TGGGTTGGCCTTGCTGCCTGACTGTGGGGAGCCCCAGGCAGCCCATCCGAGGCAGAGGCGAGATGTAGGAGAAAGAAGTCTGGTGTCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
3UTR GCA 90 bp AGGCAGGCACAAGTCTCACTTGGAGGTTGGTGGTGGCCAGTGCAGTaGTGTGGGCAGAGGTCTGACCTGGCCCACTCTCTGCTTGCTCAT +
Preference number: 1 (lower is better)
Translates to: RQAQVSLGGWWWPVQ*CGQRSDLAHSLLAH
Trigger: ATGAGCAAGCAGAGAGTGGGCCAGGTCAGACCTCTGCCCACAGCACTGCACTGGCCACCACCAACCTCCAAGTGAGACTTGTGCCTGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR GCA 90 bp AGGAGACAGTTGCTAAGCAAGGTTAGCAGCTTGAAGGGGTCAGGGTaGAGGGAGGCAAGCGGCAGGGAAGGAGCGGGTAAGGTGGACACC +
Preference number: 1 (lower is better)
Translates to: RRQLLSKVSSLKGSG*REASGREGAGKVDT
Trigger: GGTGTCCACCTTACCCGCTCCTTCCCTGCCGCTTGCCTCCCTGCACCCTGACCCCTTCAAGCTGCTAACCTTGCTTAGCAACTGTCTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
3UTR CCA 90 bp TGGTCCCATGCTGTCCTAACTAGCATCAGGACAGCCATCACAGTCTaGGACAGGCCAGGGCTAGGGTCCGGGGGCTTAGGCACAGCCTTA +
Preference number: 1 (lower is better)
Translates to: WSHAVLTSIRTAITV*DRPGLGSGGLGTAL
Trigger: TAAGGCTGTGCCTAAGCCCCCGGACCCTAGCCCTGGCCTGTCCCAGACTGTGATGGCTGTCCTGATGCTAGTTAGGACAGCATGGGACCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR TCA 90 bp TATGGCCTGGACTGGGGCATTTCTGAAAAAGGTGTCTTCAGGATATaGCCCAGAATAAGGACTACTGTGCTCTGGGAGCTGGAAGGCAGA +
Preference number: 1 (lower is better)
Translates to: YGLDWGISEKGVFRI*PRIRTTVLWELEGR
Trigger: TCTGCCTTCCAGCTCCCAGAGCACAGTAGTCCTTATTCTGGGTCATATCCTGAAGACACCTTTTTCAGAAATGCCCCAGTCCAGGCCATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR CCA 90 bp ATGGCAGCTTACATTGGCTTTAAATATGGAAAAGCCAGGGCCTTATaGTCCCATGCTGTCCTAACTAGCATCAGGACAGCCATCACAGTC +
Preference number: 1 (lower is better)
Translates to: MAAYIGFKYGKARAL*SHAVLTSIRTAITV
Trigger: GACTGTGATGGCTGTCCTGATGCTAGTTAGGACAGCATGGGACCATAAGGCCCTGGCTTTTCCATATTTAAAGCCAATGTAAGCTGCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR CCA 90 bp TTCGCACAGACACGTGGCAGCTCACATTGGTCACATAGAGACACATaGCAGCTTACATTGGCTTTAAATATGGAAAAGCCAGGGCCTTAT +
Preference number: 1 (lower is better)
Translates to: FAQTRGSSHWSHRDT*QLTLALNMEKPGPY
Trigger: ATAAGGCCCTGGCTTTTCCATATTTAAAGCCAATGTAAGCTGCCATGTGTCTCTATGTGACCAATGTGAGCTGCCACGTGTCTGTGCGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp CAAGATCTGTCAGAGCAAGGCCTCTGTCCATCCCCCTGGACAGACTCTGGCACACGCCTCTGCCTCGGATaGGCTGCCTGGGGCTCCCCA +
Preference number: 2 (lower is better)
Translates to: QDLSEQGLCPSPWTDSGTRLCLG*AAWGSP
Trigger: TGGGGAGCCCCAGGCAGCCCATCCGAGGCAGAGGCG...TGTGCCAGAGTCTGTCCAGGGGGATGGACAGAGGCCTTGCTCTGACAGATCTTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
3UTR-3UTR CCA 90 bp CTCCTGGCTTTCCTGGCCAGGGCTAATTGCCCTGGGGTGTCCAGGTCCAGGGTGACTCAGCTAGGCCAGTaGCTGAGGAACGGAGGACAC +
Preference number: 2 (lower is better)
Translates to: LLAFLARANCPGVSRSRVTQLGQ*LRNGGH
Trigger: GTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGT...CACCCTGGACCTGGACACCCCAGGGCAATTAGCCCTGGCCAGGAAAGCCAGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR GCA 90 bp TGCCAGCTCCTGGCTTTCCTGGCCAGGGCTAATTGCCCTGGGGTGTCCAGGTCCCCACAATCCACGGCTTaGGTGGAAAATGGGGAACAC +
Preference number: 2 (lower is better)
Translates to: CQLLAFLARANCPGVSRSPQSTA*VENGEH
Trigger: GTGTTCCCCATTTTCCACGCAAGCCGTGGATTGTGG...GGACCTGGACACCCCAGGGCAATTAGCCCTGGCCAGGAAAGCCAGGAGCTGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR GCA 90 bp CTCCTGGCTTTCCTGGCCAGGGCTAATTGCCCTGGGGTGTCCAGGTCCAGGGTGCCACAATCCACGGCTTaGGTGGAAAATGGGGAACAC +
Preference number: 2 (lower is better)
Translates to: LLAFLARANCPGVSRSRVPQSTA*VENGEH
Trigger: GTGTTCCCCATTTTCCACGCAAGCCGTGGATTGTGG...CACCCTGGACCTGGACACCCCAGGGCAATTAGCCCTGGCCAGGAAAGCCAGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR GCA 90 bp TGGCTGGCCAGCCGTGTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACGGCACTGGCTCCTCTTaGCAGCTCCTGGCTTTCCTG +
Preference number: 2 (lower is better)
Translates to: WLASRVLRMYSHRHVAAHGTGSS*QLLAFL
Trigger: CAGGAAAGCCAGGAGCTGGCAAGAGGAGCCAGTGCC...GTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCACACGGCTGGCCAGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp TCTCACTTGGAGGTTGGTGGTGGCCAGTGCAGTGCTGTGGGCAGAGGTCTGACCACTCAGCTAGGCCAGTaGCTGAGGAACGGAGGACAC +
Preference number: 2 (lower is better)
Translates to: SHLEVGGGQCSAVGRGLTTQLGQ*LRNGGH
Trigger: GTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGT...GGTCAGACCTCTGCCCACAGCACTGCACTGGCCACCACCAACCTCCAAGTGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR GCA 90 bp GGGAAAGCATTAGGCAACCAGAAGGTGGTGGCCTCAGTCCACAACAGGCAGGCAGGCACTGGCTCCTCTTaGCAGCTCCTGGCTTTCCTG +
Preference number: 2 (lower is better)
Translates to: GKALGNQKVVASVHNRQAGTGSS*QLLAFL
Trigger: CAGGAAAGCCAGGAGCTGGCAAGAGGAGCCAGTGCC...TGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTTGCCTAATGCTTTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR GCA 90 bp GTCCACAACAGGCAGGCACAAGTCTCACTTGGAGGTTGGTGGTGGCCAGTGCAGACCTGGCCCACTCTCTaGTTGCTCATCTCCACTGGG +
Preference number: 2 (lower is better)
Translates to: VHNRQAQVSLGGWWWPVQTWPTL*LLISTG
Trigger: CCCAGTGGAGATGAGCAAGCAGAGAGTGGGCCAGGT...CTGCACTGGCCACCACCAACCTCCAAGTGAGACTTGTGCCTGCCTGTTGTGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR GCA 90 bp CCTCAGTCCACAACAGGCAGGCACAAGTCTCACTTGGAGGTTGGTGGTGGCCAGACCTGGCCCACTCTCTaGTTGCTCATCTCCACTGGG +
Preference number: 2 (lower is better)
Translates to: PQSTTGRHKSHLEVGGGQTWPTL*LLISTG
Trigger: CCCAGTGGAGATGAGCAAGCAGAGAGTGGGCCAGGT...CTGGCCACCACCAACCTCCAAGTGAGACTTGTGCCTGCCTGTTGTGGACTGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp AGGACTACTGTGCTCTGGGAGCTGGAAGGCAGAAAGCGACCCATCTCGGGCAGTACTCAGCTAGGCCAGTaGCTGAGGAACGGAGGACAC +
Preference number: 2 (lower is better)
Translates to: RTTVLWELEGRKRPISGSTQLGQ*LRNGGH
Trigger: GTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGT...ACTGCCCGAGATGGGTCGCTTTCTGCCTTCCAGCTCCCAGAGCACAGTAGTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp AGGACTACTGTGCTCTGGGAGCTGGAAGGCAGAAAGCGACCCATCTCGGGCAGTCCTGGAGTTTGGCACTaGCTCCTCTTGCCAGCTCCT +
Preference number: 2 (lower is better)
Translates to: RTTVLWELEGRKRPISGSPGVWH*LLLPAP
Trigger: AGGAGCTGGCAAGAGGAGCCAGTGCCAAACTCCAGG...ACTGCCCGAGATGGGTCGCTTTCTGCCTTCCAGCTCCCAGAGCACAGTAGTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp CCTCAGTCCACAACAGGCAGGCACAAGTCTCACTTGGAGGTTGGTGGTGGCCAGCCTGGAGTTTGGCACTaGCTCCTCTTGCCAGCTCCT +
Preference number: 2 (lower is better)
Translates to: PQSTTGRHKSHLEVGGGQPGVWH*LLLPAP
Trigger: AGGAGCTGGCAAGAGGAGCCAGTGCCAAACTCCAGG...CTGGCCACCACCAACCTCCAAGTGAGACTTGTGCCTGCCTGTTGTGGACTGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR GCA 90 bp CCCAGGCCTTGTCAAACTCAGCTAGGCCAGTGGCTGAGGAACGGAGGACACTGGCCACAATCCACGGCTTaGGTGGAAAATGGGGAACAC +
Preference number: 2 (lower is better)
Translates to: PRPCQTQLGQWLRNGGHWPQSTA*VENGEH
Trigger: GTGTTCCCCATTTTCCACGCAAGCCGTGGATTGTGG...CCAGTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGTTTGACAAGGCCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR GCA 90 bp AACCAGAAGGTGGTGGCCTCAGTCCACAACAGGCAGGCACAAGTCTCACTTGGAGTTGGTGGTGGCCAGTaGAGTGCTGTGGGCAGAGGT +
Preference number: 2 (lower is better)
Translates to: NQKVVASVHNRQAQVSLGVGGGQ*SAVGRG
Trigger: ACCTCTGCCCACAGCACTGCACTGGCCACCACCAAC...TCCAAGTGAGACTTGTGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp CATGCTGTCCTAACTAGCATCAGGACAGCCATCACAGTCTGGGACAGGCCAGGGACTCAGCTAGGCCAGTaGCTGAGGAACGGAGGACAC +
Preference number: 2 (lower is better)
Translates to: HAVLTSIRTAITVWDRPGTQLGQ*LRNGGH
Trigger: GTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGT...CCCTGGCCTGTCCCAGACTGTGATGGCTGTCCTGATGCTAGTTAGGACAGCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp AGGACTACTGTGCTCTGGGAGCTGGAAGGCAGAAAGCGACCCATCTCGGGCAGTCTTGCTCATCTCCACTaGGCCCTAGAAGCCTGGAGT +
Preference number: 2 (lower is better)
Translates to: RTTVLWELEGRKRPISGSLAHLH*ALEAWS
Trigger: ACTCCAGGCTTCTAGGGCCCAGTGGAGATGAGCAAG...ACTGCCCGAGATGGGTCGCTTTCTGCCTTCCAGCTCCCAGAGCACAGTAGTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp CATGCTGTCCTAACTAGCATCAGGACAGCCATCACAGTCTGGGACAGGCCAGGGGTCTCACTTGGAGGTTaGTGGTGGCCAGTGCAGTGC +
Preference number: 2 (lower is better)
Translates to: HAVLTSIRTAITVWDRPGVSLGG*WWPVQC
Trigger: GCACTGCACTGGCCACCACCAACCTCCAAGTGAGAC...CCCTGGCCTGTCCCAGACTGTGATGGCTGTCCTGATGCTAGTTAGGACAGCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp CATGCTGTCCTAACTAGCATCAGGACAGCCATCACAGTCTGGGACAGGCCAGGGCTGTGCTCTGGGAGCTaGAAGGCAGAAAGCGACCCA +
Preference number: 2 (lower is better)
Translates to: HAVLTSIRTAITVWDRPGLCSGS*KAESDP
Trigger: TGGGTCGCTTTCTGCCTTCCAGCTCCCAGAGCACAG...CCCTGGCCTGTCCCAGACTGTGATGGCTGTCCTGATGCTAGTTAGGACAGCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR TCA 90 bp AGTAAGACTAGGAAGCTCCCAAGATCTGTCAGAGCAAGGCCTCTGTCCATCCCCGCAAGGTTAGCAGCTTaGAGGGGTCAGGGTGCAGGG +
Preference number: 2 (lower is better)
Translates to: SKTRKLPRSVRARPLSIPARLAA*RGQGAG
Trigger: CCCTGCACCCTGACCCCTTCAAGCTGCTAACCTTGC...GGGGATGGACAGAGGCCTTGCTCTGACAGATCTTGGGAGCTTCCTAGTCTTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
3UTR-3UTR CCA 90 bp ATTAGGCAACCAGAAGGTGGTGGCCTCAGTCCACAACAGGCAGGCACAAGTCTCCCTGGAGTTTGGCACTaGCTCCTCTTGCCAGCTCCT +
Preference number: 2 (lower is better)
Translates to: IRQPEGGGLSPQQAGTSLPGVWH*LLLPAP
Trigger: AGGAGCTGGCAAGAGGAGCCAGTGCCAAACTCCAGG...GAGACTTGTGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTTGCCTAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp ATTAGGCAACCAGAAGGTGGTGGCCTCAGTCCACAACAGGCAGGCACAAGTCTCGTCTCACTTGGAGGTTaGTGGTGGCCAGTGCAGTGC +
Preference number: 2 (lower is better)
Translates to: IRQPEGGGLSPQQAGTSLVSLGG*WWPVQC
Trigger: GCACTGCACTGGCCACCACCAACCTCCAAGTGAGAC...GAGACTTGTGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTTGCCTAAT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp CATGCTGTCCTAACTAGCATCAGGACAGCCATCACAGTCTGGGACAGGCCAGGGGGCACAAGTCTCACTTaGAGGTTGGTGGTGGCCAGT +
Preference number: 2 (lower is better)
Translates to: HAVLTSIRTAITVWDRPGGTSLT*RLVVAS
Trigger: ACTGGCCACCACCAACCTCCAAGTGAGACTTGTGCC...CCCTGGCCTGTCCCAGACTGTGATGGCTGTCCTGATGCTAGTTAGGACAGCATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR GCA 90 bp GGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTATGGCCTGGACTGGGGCACTGGCTCCTCTTaGCAGCTCCTGGCTTTCCTG +
Preference number: 2 (lower is better)
Translates to: GILECWRANSNSSYGLDWGTGSS*QLLAFL
Trigger: CAGGAAAGCCAGGAGCTGGCAAGAGGAGCCAGTGCC...CCAGTCCAGGCCATAGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR GCA 90 bp ACTGAAGTAAGACTAGGAAGCTCCCAAGATCTGTCAGAGCAAGGCCTCTGTCCATTGAAGGGGTCAGGGTaGAGGGAGGCAAGCGGCAGG +
Preference number: 2 (lower is better)
Translates to: TEVRLGSSQDLSEQGLCPLKGSG*REASGR
Trigger: CCTGCCGCTTGCCTCCCTGCACCCTGACCCCTTCAA...TGGACAGAGGCCTTGCTCTGACAGATCTTGGGAGCTTCCTAGTCTTACTTCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
3UTR-3UTR CCA 90 bp ATTAGGCAACCAGAAGGTGGTGGCCTCAGTCCACAACAGGCAGGCACAAGTCTCGGCACAAGTCTCACTTaGAGGTTGGTGGTGGCCAGT +
Preference number: 2 (lower is better)
Translates to: IRQPEGGGLSPQQAGTSLGTSLT*RLVVAS
Trigger: ACTGGCCACCACCAACCTCCAAGTGAGACTTGTGCC...GAGACTTGTGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTTGCCTAAT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp TGGCTGGCCAGCCGTGTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACACACACAGGGAAGGGTaGATTATTGCTGGGCATGTG +
Preference number: 2 (lower is better)
Translates to: WLASRVLRMYSHRHVAAHTHREG*IIAGHV
Trigger: CACATGCCCAGCAATAATCCACCCTTCCCTGTGTGT...GTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCACACGGCTGGCCAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR GCA 90 bp AACCAGAAGGTGGTGGCCTCAGTCCACAACAGGCAGGCACAAGTCTCACTTGGACCACAATCCACGGCTTaGGTGGAAAATGGGGAACAC +
Preference number: 2 (lower is better)
Translates to: NQKVVASVHNRQAQVSLGPQSTA*VENGEH
Trigger: GTGTTCCCCATTTTCCACGCAAGCCGTGGATTGTGG...TCCAAGTGAGACTTGTGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR GCA 90 bp GTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACATTGGTCACATAGAGGGCACTGGCTCCTCTTaGCAGCTCCTGGCTTTCCTG +
Preference number: 2 (lower is better)
Translates to: VLRMYSHRHVAAHIGHIEGTGSS*QLLAFL
Trigger: CAGGAAAGCCAGGAGCTGGCAAGAGGAGCCAGTGCC...CTCTATGTGACCAATGTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR GCA 90 bp GTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACATTGGTCACATAGAGTGGTGGCCAGTGCAGTaGTGTGGGCAGAGGTCTGAC +
Preference number: 2 (lower is better)
Translates to: VLRMYSHRHVAAHIGHIEWWPVQ*CGQRSD
Trigger: GTCAGACCTCTGCCCACAGCACTGCACTGGCCACCA...CTCTATGTGACCAATGTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp GTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACATTGGTCACATAGAGCTTGGAGGTTGGTGGTaGCCAGTGCAGTGCTGTGGG +
Preference number: 2 (lower is better)
Translates to: VLRMYSHRHVAAHIGHIELGGWW*PVQCCG
Trigger: CCCACAGCACTGCACTGGCCACCACCAACCTCCAAG...CTCTATGTGACCAATGTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp GGGTTAAACTATGTCCCAGTCCTAGAGGATACAAAGACCCCAGCTCCAACCCTGGTCTCACTTGGAGGTTaGTGGTGGCCAGTGCAGTGC +
Preference number: 2 (lower is better)
Translates to: GLNYVPVLEDTKTPAPTLVSLGG*WWPVQC
Trigger: GCACTGCACTGGCCACCACCAACCTCCAAGTGAGAC...CAGGGTTGGAGCTGGGGTCTTTGTATCCTCTAGGACTGGGACATAGTTTAACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp AGCATCAGGACAGCCATCACAGTCTGGGACAGGCCAGGGCTAGGGTCCGGGGGCTTTTATGAGGGATTCTaGAATGTTGGAGGGCTAATT +
Preference number: 2 (lower is better)
Translates to: SIRTAITVWDRPGLGSGGFYEGF*NVGGLI
Trigger: AATTAGCCCTCCAACATTCCAGAATCCCTCATAAAA...GCCCCCGGACCCTAGCCCTGGCCTGTCCCAGACTGTGATGGCTGTCCTGATGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR GCA 90 bp GTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACATTGGTCACATAGAGACCTGGCCCACTCTCTaGTTGCTCATCTCCACTGGG +
Preference number: 2 (lower is better)
Translates to: VLRMYSHRHVAAHIGHIETWPTL*LLISTG
Trigger: CCCAGTGGAGATGAGCAAGCAGAGAGTGGGCCAGGT...CTCTATGTGACCAATGTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp GGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTATGGCCTGGACTGGCTTGCTCATCTCCACTaGGCCCTAGAAGCCTGGAGT +
Preference number: 2 (lower is better)
Translates to: GILECWRANSNSSYGLDWLAHLH*ALEAWS
Trigger: ACTCCAGGCTTCTAGGGCCCAGTGGAGATGAGCAAG...CCAGTCCAGGCCATAGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp AACTATGTCCCAGTCCTAGAGGATACAAAGACCCCAGCTCCAACCCTGACAAATCTTGGAGGTTGGTGGTaGCCAGTGCAGTGCTGTGGG +
Preference number: 2 (lower is better)
Translates to: NYVPVLEDTKTPAPTLTNLGGWW*PVQCCG
Trigger: CCCACAGCACTGCACTGGCCACCACCAACCTCCAAG...ATTTGTCAGGGTTGGAGCTGGGGTCTTTGTATCCTCTAGGACTGGGACATAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp GTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACATTGGTCACATAGAGCTGTGCTCTGGGAGCTaGAAGGCAGAAAGCGACCCA +
Preference number: 2 (lower is better)
Translates to: VLRMYSHRHVAAHIGHIELCSGS*KAESDP
Trigger: TGGGTCGCTTTCTGCCTTCCAGCTCCCAGAGCACAG...CTCTATGTGACCAATGTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR TCA 90 bp CATGCTGTCCTAACTAGCATCAGGACAGCCATCACAGTCTGGGACAGGCCAGGGGGTGTCTTCAGGATATaGCCCAGAATAAGGACTACT +
Preference number: 2 (lower is better)
Translates to: HAVLTSIRTAITVWDRPGGVFRI*PRIRTT
Trigger: AGTAGTCCTTATTCTGGGTCATATCCTGAAGACACC...CCCTGGCCTGTCCCAGACTGTGATGGCTGTCCTGATGCTAGTTAGGACAGCATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp AGTAAGACTAGGAAGCTCCCAAGATCTGTCAGAGCAAGGCCTCTGTCCATCCCCAAGGAGCGGGTAAGGTaGACACCAGACTTCTTTCTC +
Preference number: 2 (lower is better)
Translates to: SKTRKLPRSVRARPLSIPKERVR*TPDFFL
Trigger: GAGAAAGAAGTCTGGTGTCCACCTTACCCGCTCCTT...GGGGATGGACAGAGGCCTTGCTCTGACAGATCTTGGGAGCTTCCTAGTCTTACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
3UTR-3UTR CCA 90 bp CAGCTTACATTGGCTTTAAATATGGAAAAGCCAGGGCCTTATGGTCCCATGCTGAGCTCCTGGCTTTCCTaGCCAGGGCTAATTGCCCTG +
Preference number: 2 (lower is better)
Translates to: QLTLALNMEKPGPYGPMLSSWLS*PGLIAL
Trigger: CAGGGCAATTAGCCCTGGCCAGGAAAGCCAGGAGCT...CAGCATGGGACCATAAGGCCCTGGCTTTTCCATATTTAAAGCCAATGTAAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp TCCCACTCAGCTAAGTCTGGGGTTAAACTATGTCCCAGTCCTAGAGGATACAAACCTGGAGTTTGGCACTaGCTCCTCTTGCCAGCTCCT +
Preference number: 2 (lower is better)
Translates to: SHSAKSGVKLCPSPRGYKPGVWH*LLLPAP
Trigger: AGGAGCTGGCAAGAGGAGCCAGTGCCAAACTCCAGG...TTTGTATCCTCTAGGACTGGGACATAGTTTAACCCCAGACTTAGCTGAGTGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp GTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACATTGGTCACATAGAGAAAGCCAGGGCCTTATaGTCCCATGCTGTCCTAACT +
Preference number: 2 (lower is better)
Translates to: VLRMYSHRHVAAHIGHIEKARAL*SHAVLT
Trigger: AGTTAGGACAGCATGGGACCATAAGGCCCTGGCTTT...CTCTATGTGACCAATGTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR CAA 90 bp CGTGGCAGCTCACATTGGTCACATAGAGACACATGGCAGCTTACATaGGCTTTAAATATGGAAAAGCCAGGGCCTTATGGTCCCATGCTG +
Preference number: 2 (lower is better)
Translates to: RGSSHWSHRDTWQLT*ALNMEKPGPYGPML
Trigger: CAGCATGGGACCATAAGGCCCTGGCTTTTCCATATTTAAAGCCAATGTAAGCTGCCATGTGTCTCTATGTGACCAATGTGAGCTGCCACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR TCA 90 bp GGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTATGGCCTGGACTGGGGTGTCTTCAGGATATaGCCCAGAATAAGGACTACT +
Preference number: 2 (lower is better)
Translates to: GILECWRANSNSSYGLDWGVFRI*PRIRTT
Trigger: AGTAGTCCTTATTCTGGGTCATATCCTGAAGACACC...CCAGTCCAGGCCATAGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR GCA 90 bp GTCTACTTTTATGAGGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTACCTGGCCCACTCTCTaGTTGCTCATCTCCACTGGG +
Preference number: 2 (lower is better)
Translates to: VYFYEGFWNVGGLILTPPTWPTL*LLISTG
Trigger: CCCAGTGGAGATGAGCAAGCAGAGAGTGGGCCAGGT...AGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCCTCATAAAAGTAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR GCA 90 bp TACTTTTATGAGGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTATGTGGTGGCCAGTGCAGTaGTGTGGGCAGAGGTCTGAC +
Preference number: 2 (lower is better)
Translates to: YFYEGFWNVGGLILTPPMWWPVQ*CGQRSD
Trigger: GTCAGACCTCTGCCCACAGCACTGCACTGGCCACCA...CATAGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCCTCATAAAAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp ATTATTGCTGGGCATGTGTCTACTTTTATGAGGGATTCTGGAATGTTGGAGGGCCTTGCTCATCTCCACTaGGCCCTAGAAGCCTGGAGT +
Preference number: 2 (lower is better)
Translates to: IIAGHVSTFMRDSGMLEGLAHLH*ALEAWS
Trigger: ACTCCAGGCTTCTAGGGCCCAGTGGAGATGAGCAAG...GCCCTCCAACATTCCAGAATCCCTCATAAAAGTAGACACATGCCCAGCAATAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR GCA 90 bp ATTATTGCTGGGCATGTGTCTACTTTTATGAGGGATTCTGGAATGTTGGAGGGCCCACAATCCACGGCTTaGGTGGAAAATGGGGAACAC +
Preference number: 2 (lower is better)
Translates to: IIAGHVSTFMRDSGMLEGPQSTA*VENGEH
Trigger: GTGTTCCCCATTTTCCACGCAAGCCGTGGATTGTGG...GCCCTCCAACATTCCAGAATCCCTCATAAAAGTAGACACATGCCCAGCAATAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp ATTATTGCTGGGCATGTGTCTACTTTTATGAGGGATTCTGGAATGTTGGAGGGCAGGACTACTGTGCTCTaGGAGCTGGAAGGCAGAAAG +
Preference number: 2 (lower is better)
Translates to: IIAGHVSTFMRDSGMLEGRTTVL*ELEGRK
Trigger: CTTTCTGCCTTCCAGCTCCCAGAGCACAGTAGTCCT...GCCCTCCAACATTCCAGAATCCCTCATAAAAGTAGACACATGCCCAGCAATAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CCA 90 bp TACTTTTATGAGGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTATGGGCACAAGTCTCACTTaGAGGTTGGTGGTGGCCAGT +
Preference number: 2 (lower is better)
Translates to: YFYEGFWNVGGLILTPPMGTSLT*RLVVAS
Trigger: ACTGGCCACCACCAACCTCCAAGTGAGACTTGTGCC...CATAGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCCTCATAAAAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR TCA 90 bp CAGCTAAGTCTGGGGTTAAACTATGTCCCAGTCCTAGAGGATACAAAGACCCCAAACCCTGACAAATGCTaGGAAAGAGGGAAAGCATTA +
Preference number: 2 (lower is better)
Translates to: QLSLGLNYVPVLEDTKTPNPDKC*ERGKAL
Trigger: TAATGCTTTCCCTCTTTCTCAGCATTTGTCAGGGTT...TGGGGTCTTTGTATCCTCTAGGACTGGGACATAGTTTAACCCCAGACTTAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR TCA 90 bp ATTATTGCTGGGCATGTGTCTACTTTTATGAGGGATTCTGGAATGTTGGAGGGCGGTGTCTTCAGGATATaGCCCAGAATAAGGACTACT +
Preference number: 2 (lower is better)
Translates to: IIAGHVSTFMRDSGMLEGGVFRI*PRIRTT
Trigger: AGTAGTCCTTATTCTGGGTCATATCCTGAAGACACC...GCCCTCCAACATTCCAGAATCCCTCATAAAAGTAGACACATGCCCAGCAATAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR TCA 90 bp GTCTACTTTTATGAGGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTGGTGTCTTCAGGATATaGCCCAGAATAAGGACTACT +
Preference number: 2 (lower is better)
Translates to: VYFYEGFWNVGGLILTPPGVFRI*PRIRTT
Trigger: AGTAGTCCTTATTCTGGGTCATATCCTGAAGACACC...AGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCCTCATAAAAGTAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CAA 90 bp GGCAGGCACAAGTCTCACTTGGAGGTTGGTGGTGGCCAGTGCAGTGCTGTGGGCTGGCACTGGCTCCTCTaGCCAGCTCCTGGCTTTCCT +
Preference number: 3 (lower is better)
Translates to: GRHKSHLEVGGGQCSAVGWHWLL*PAPGFP
Trigger: AGGAAAGCCAGGAGCTGGCAAGAGGAGCCAGTGCCA...GCCCACAGCACTGCACTGGCCACCACCAACCTCCAAGTGAGACTTGTGCCTGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CAA 90 bp CCACTGGGCCCTAGAAGCCTGGAGTTTGGCACTGGCTCCTCTTGCCAGCTCCTGTGGCACTGGCTCCTCTaGCCAGCTCCTGGCTTTCCT +
Preference number: 3 (lower is better)
Translates to: PLGPRSLEFGTGSSCQLLWHWLL*PAPGFP
Trigger: AGGAAAGCCAGGAGCTGGCAAGAGGAGCCAGTGCCA...CAGGAGCTGGCAAGAGGAGCCAGTGCCAAACTCCAGGCTTCTAGGGCCCAGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR CCA 72 bp GCCTGGAGTTTGGCACTGGCTCCTCTTGCCAGCTCCTaGCTTTCCTGGCCAGGGCTAATTGCCCTGGGGTGT +
Preference number: 3 (lower is better)
Translates to: AWSLALAPLASS*LSWPGLIALGC
Trigger: ACACCCCAGGGCAATTAGCCCTGGCCAGGAAAGCCAGGAGCTGGCAAGAGGAGCCAGTGCCAAACTCCAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR GCA 72 bp CAAGTCTCACTTGGAGGTTGGTGGTGGCCAGTGCAGTaGTGTGGGCAGAGGTCTGACCTGGCCCACTCTCTG +
Preference number: 3 (lower is better)
Translates to: QVSLGGWWWPVQ*CGQRSDLAHSL
Trigger: CAGAGAGTGGGCCAGGTCAGACCTCTGCCCACAGCACTGCACTGGCCACCACCAACCTCCAAGTGAGACTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR CCA 72 bp GGCCTCAGTCCACAACAGGCAGGCACAAGTCTCACTTaGAGGTTGGTGGTGGCCAGTGCAGTGCTGTGGGCA +
Preference number: 3 (lower is better)
Translates to: GLSPQQAGTSLT*RLVVASAVLWA
Trigger: TGCCCACAGCACTGCACTGGCCACCACCAACCTCCAAGTGAGACTTGTGCCTGCCTGTTGTGGACTGAGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR CCA 72 bp TCTCTGCTTGCTCATCTCCACTGGGCCCTAGAAGCCTaGAGTTTGGCACTGGCTCCTCTTGCCAGCTCCTGG +
Preference number: 3 (lower is better)
Translates to: SLLAHLHWALEA*SLALAPLASSW
Trigger: CCAGGAGCTGGCAAGAGGAGCCAGTGCCAAACTCCAGGCTTCTAGGGCCCAGTGGAGATGAGCAAGCAGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR CCA 72 bp TCTGACCTGGCCCACTCTCTGCTTGCTCATCTCCACTaGGCCCTAGAAGCCTGGAGTTTGGCACTGGCTCCT +
Preference number: 3 (lower is better)
Translates to: SDLAHSLLAHLH*ALEAWSLALAP
Trigger: AGGAGCCAGTGCCAAACTCCAGGCTTCTAGGGCCCAGTGGAGATGAGCAAGCAGAGAGTGGGCCAGGTCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CAA 90 bp TGGCTGGCCAGCCGTGTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACAGTCTCACTTGGAGGTaGGTGGTGGCCAGTGCAGTG +
Preference number: 3 (lower is better)
Translates to: WLASRVLRMYSHRHVAAHSLTWR*VVASAV
Trigger: CACTGCACTGGCCACCACCAACCTCCAAGTGAGACT...GTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCACACGGCTGGCCAGCCA
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CAA 90 bp AACCAGAAGGTGGTGGCCTCAGTCCACAACAGGCAGGCACAAGTCTCACTTGGATGGCACTGGCTCCTCTaGCCAGCTCCTGGCTTTCCT +
Preference number: 3 (lower is better)
Translates to: NQKVVASVHNRQAQVSLGWHWLL*PAPGFP
Trigger: AGGAAAGCCAGGAGCTGGCAAGAGGAGCCAGTGCCA...TCCAAGTGAGACTTGTGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR GCA 72 bp TCTTGCCAGCTCCTGGCTTTCCTGGCCAGGGCTAATTaGCCTGGGGTGTCCAGGTCCAGGGTGGAATTAAGA +
Preference number: 3 (lower is better)
Translates to: SCQLLAFLARAN*PGVSRSRVELR
Trigger: TCTTAATTCCACCCTGGACCTGGACACCCCAGGGCAATTAGCCCTGGCCAGGAAAGCCAGGAGCTGGCAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR CCA 72 bp CAAGATCTGTCAGAGCAAGGCCTCTGTCCATCCCCCTaGACAGACTCTGGCACAAGGAGACAGTTGCTAAGC +
Preference number: 3 (lower is better)
Translates to: QDLSEQGLCPSP*TDSGTRRQLLS
Trigger: GCTTAGCAACTGTCTCCTTGTGCCAGAGTCTGTCCAGGGGGATGGACAGAGGCCTTGCTCTGACAGATCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
3UTR-3UTR CAA 90 bp GGGTTAAACTATGTCCCAGTCCTAGAGGATACAAAGACCCCAGCTCCAACCCTGCTAGAAGCCTGGAGTTaGGCACTGGCTCCTCTTGCC +
Preference number: 3 (lower is better)
Translates to: GLNYVPVLEDTKTPAPTLLEAWS*ALAPLA
Trigger: GGCAAGAGGAGCCAGTGCCAAACTCCAGGCTTCTAG...CAGGGTTGGAGCTGGGGTCTTTGTATCCTCTAGGACTGGGACATAGTTTAACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CAA 90 bp CAGCTAAGTCTGGGGTTAAACTATGTCCCAGTCCTAGAGGATACAAAGACCCCATGGCCCACTCTCTGCTaGCTCATCTCCACTGGGCCC +
Preference number: 3 (lower is better)
Translates to: QLSLGLNYVPVLEDTKTPWPTLC*LISTGP
Trigger: GGGCCCAGTGGAGATGAGCAAGCAGAGAGTGGGCCA...TGGGGTCTTTGTATCCTCTAGGACTGGGACATAGTTTAACCCCAGACTTAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR GCA 72 bp ACCCCCACCAGGCACACACAGGGAAGGGTGGATTATTaGTGGGCATGTGTCTACTTTTATGAGGGATTCTGG +
Preference number: 3 (lower is better)
Translates to: TPTRHTQGRVDY*WACVYFYEGFW
Trigger: CCAGAATCCCTCATAAAAGTAGACACATGCCCAGCAATAATCCACCCTTCCCTGTGTGTGCCTGGTGGGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CAA 90 bp CAGCTTACATTGGCTTTAAATATGGAAAAGCCAGGGCCTTATGGTCCCATGCTGAGTCTCACTTGGAGGTaGGTGGTGGCCAGTGCAGTG +
Preference number: 3 (lower is better)
Translates to: QLTLALNMEKPGPYGPMLSLTWR*VVASAV
Trigger: CACTGCACTGGCCACCACCAACCTCCAAGTGAGACT...CAGCATGGGACCATAAGGCCCTGGCTTTTCCATATTTAAAGCCAATGTAAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR-3UTR CAA 90 bp ATTATTGCTGGGCATGTGTCTACTTTTATGAGGGATTCTGGAATGTTGGAGGGCAGTCTCACTTGGAGGTaGGTGGTGGCCAGTGCAGTG +
Preference number: 3 (lower is better)
Translates to: IIAGHVSTFMRDSGMLEGSLTWR*VVASAV
Trigger: CACTGCACTGGCCACCACCAACCTCCAAGTGAGACT...GCCCTCCAACATTCCAGAATCCCTCATAAAAGTAGACACATGCCCAGCAATAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR TCA 72 bp GGATACAAAGACCCCAGCTCCAACCCTGACAAATGCTaGGAAAGAGGGAAAGCATTAGGCAACCAGAAGGTG +
Preference number: 3 (lower is better)
Translates to: GYKDPSSNPDKC*ERGKALGNQKV
Trigger: CACCTTCTGGTTGCCTAATGCTTTCCCTCTTTCTCAGCATTTGTCAGGGTTGGAGCTGGGGTCTTTGTATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR TCA 72 bp GACTGGGGCATTTCTGAAAAAGGTGTCTTCAGGATATaGCCCAGAATAAGGACTACTGTGCTCTGGGAGCTG +
Preference number: 3 (lower is better)
Translates to: DWGISEKGVFRI*PRIRTTVLWEL
Trigger: CAGCTCCCAGAGCACAGTAGTCCTTATTCTGGGTCATATCCTGAAGACACCTTTTTCAGAAATGCCCCAGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR CCA 72 bp ACACGTGGCAGCTCACATTGGTCACATAGAGACACATaGCAGCTTACATTGGCTTTAAATATGGAAAAGCCA +
Preference number: 3 (lower is better)
Translates to: TRGSSHWSHRDT*QLTLALNMEKP
Trigger: TGGCTTTTCCATATTTAAAGCCAATGTAAGCTGCCATGTGTCTCTATGTGACCAATGTGAGCTGCCACGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR CCA 72 bp TATTGCTGGGCATGTGTCTACTTTTATGAGGGATTCTaGAATGTTGGAGGGCTAATTCTAACTCCTCCTATG +
Preference number: 3 (lower is better)
Translates to: YCWACVYFYEGF*NVGGLILTPPM
Trigger: CATAGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCCTCATAAAAGTAGACACATGCCCAGCAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp CCCAGAGAGGGTTGTGGGCTTCCCACGAGAGGCTTAGAGCAGCAGCTCGGCCAAAGGCGCCCAATGGGCTaGCGCTCACATAGGCTGTGG +
Preference number: 4 (lower is better)
Translates to: PREGCGLPTRGLEQQLGQRRPMG*RSHRLW
Trigger: CCACAGCCTATGTGAGCGCCAGCCCATTGGGCGCCT...TTGGCCGAGCTGCTGCTCTAAGCCTCTCGTGGGAAGCCCACAACCCTCTCTGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR GCA 90 bp CTCCTGGCTTTCCTGGCCAGGGCTAATTGCCCTGGGGTGTCCAGGTCCAGGGTGCCTGGAAGAGGTCTTTaGAGGGTCCCTGCTCTAGCC +
Preference number: 4 (lower is better)
Translates to: LLAFLARANCPGVSRSRVPGRGL*RVPALA
Trigger: GGCTAGAGCAGGGACCCTGCAAAGACCTCTTCCAGG...CACCCTGGACCTGGACACCCCAGGGCAATTAGCCCTGGCCAGGAAAGCCAGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp AGCATCAGGACAGCCATCACAGTCTGGGACAGGCCAGGGCTAGGGTCCGGGGGCCGAAGCTCCTCACACTaGCTGATATGGGGGAACTGC +
Preference number: 4 (lower is better)
Translates to: SIRTAITVWDRPGLGSGGRSSSH*LIWGNC
Trigger: GCAGTTCCCCCATATCAGCCAGTGTGAGGAGCTTCG...GCCCCCGGACCCTAGCCCTGGCCTGTCCCAGACTGTGATGGCTGTCCTGATGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp CCCAGGCCTTGTCAAACTCAGCTAGGCCAGTGGCTGAGGAACGGAGGACACTGGAGGCGCCCAATGGGCTaGCGCTCACATAGGCTGTGG +
Preference number: 4 (lower is better)
Translates to: PRPCQTQLGQWLRNGGHWRRPMG*RSHRLW
Trigger: CCACAGCCTATGTGAGCGCCAGCCCATTGGGCGCCT...CCAGTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGTTTGACAAGGCCTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp GTTCTGCCCAGAGAGGGTTGTGGGCTTCCCACGAGAGGCTTAGAGCAGCAGCTCGTGCTCAGGTACTCGTaGGTCAGCCGGGTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: VLPREGCGLPTRGLEQQLVLRYS*VSRVSS
Trigger: GGAGCTGACCCGGCTGACCCACGAGTACCTGAGCAC...GAGCTGCTGCTCTAAGCCTCTCGTGGGAAGCCCACAACCCTCTCTGGGCAGAAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR TCA 90 bp CCACTGGGCCCTAGAAGCCTGGAGTTTGGCACTGGCTCCTCTTGCCAGCTCCTGTGCTGGAAGGGCGACTaGCCTGCGATCATCTCGTAC +
Preference number: 4 (lower is better)
Translates to: PLGPRSLEFGTGSSCQLLCWKGD*PAIISY
Trigger: GTACGAGATGATCGCAGGTCAGTCGCCCTTCCAGCA...CAGGAGCTGGCAAGAGGAGCCAGTGCCAAACTCCAGGCTTCTAGGGCCCAGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp GGCAGGCACAAGTCTCACTTGGAGGTTGGTGGTGGCCAGTGCAGTGCTGTGGGCCCTGGAAGAGGTCTTTaGAGGGTCCCTGCTCTAGCC +
Preference number: 4 (lower is better)
Translates to: GRHKSHLEVGGGQCSAVGPGRGL*RVPALA
Trigger: GGCTAGAGCAGGGACCCTGCAAAGACCTCTTCCAGG...GCCCACAGCACTGCACTGGCCACCACCAACCTCCAAGTGAGACTTGTGCCTGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp CTGCCCAGAGAGGGTTGTGGGCTTCCCACGAGAGGCTTAGAGCAGCAGCTCGGCCGAAGCTCCTCACACTaGCTGATATGGGGGAACTGC +
Preference number: 4 (lower is better)
Translates to: LPREGCGLPTRGLEQQLGRSSSH*LIWGNC
Trigger: GCAGTTCCCCCATATCAGCCAGTGTGAGGAGCTTCG...GCCGAGCTGCTGCTCTAAGCCTCTCGTGGGAAGCCCACAACCCTCTCTGGGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR CCA 90 bp TGGCTGGCCAGCCGTGTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACGTGCTCAGGTACTCGTaGGTCAGCCGGGTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: WLASRVLRMYSHRHVAAHVLRYS*VSRVSS
Trigger: GGAGCTGACCCGGCTGACCCACGAGTACCTGAGCAC...GTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCACACGGCTGGCCAGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp GTCCACAACAGGCAGGCACAAGTCTCACTTGGAGGTTGGTGGTGGCCAGTGCAGGTGCTCAGGTACTCGTaGGTCAGCCGGGTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: VHNRQAQVSLGGWWWPVQVLRYS*VSRVSS
Trigger: GGAGCTGACCCGGCTGACCCACGAGTACCTGAGCAC...CTGCACTGGCCACCACCAACCTCCAAGTGAGACTTGTGCCTGCCTGTTGTGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR CAA 72 bp TGGCCTCAGTCCACAACAGGCAGGCACAAGTCTCACTaGGAGGTTGGTGGTGGCCAGTGCAGTGCTGTGGGC +
Preference number: 4 (lower is better)
Translates to: WPQSTTGRHKSH*EVGGGQCSAVG
Trigger: GCCCACAGCACTGCACTGGCCACCACCAACCTCCAAGTGAGACTTGTGCCTGCCTGTTGTGGACTGAGGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR TCA 90 bp GGGTTGTGGGCTTCCCACGAGAGGCTTAGAGCAGCAGCTCGGCCAAATACGGGTCCCACCAGTCAGGACTaGACGTGTAGCGCTCATTCC +
Preference number: 4 (lower is better)
Translates to: GLWASHERLRAAARPNTGPTSQD*TCSAHS
Trigger: GGAATGAGCGCTACACGTTCAGTCCTGACTGGTGGG...ACCCGTATTTGGCCGAGCTGCTGCTCTAAGCCTCTCGTGGGAAGCCCACAACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR TCA 90 bp GCCCAGGCCTTGTCAAACTCAGCTAGGCCAGTGGCTGAGGAACGGAGGACACTGCCCACCAGTCAGGACTaGACGTGTAGCGCTCATTCC +
Preference number: 4 (lower is better)
Translates to: AQALSNSARPVAEERRTLPTSQD*TCSAHS
Trigger: GGAATGAGCGCTACACGTTCAGTCCTGACTGGTGGG...CAGTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGTTTGACAAGGCCTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR TCA 90 bp CCCAGGCCTTGTCAAACTCAGCTAGGCCAGTGGCTGAGGAACGGAGGACACTGGTGCTGGAAGGGCGACTaGCCTGCGATCATCTCGTAC +
Preference number: 4 (lower is better)
Translates to: PRPCQTQLGQWLRNGGHWCWKGD*PAIISY
Trigger: GTACGAGATGATCGCAGGTCAGTCGCCCTTCCAGCA...CCAGTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGTTTGACAAGGCCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp TCCTGGCTTTCCTGGCCAGGGCTAATTGCCCTGGGGTGTCCAGGTCCAGGGTGGTCTTGCTCTTGCCTTTaGGATTCCCGCCACCACCTT +
Preference number: 4 (lower is better)
Translates to: SWLSWPGLIALGCPGPGWSCSCL*DSRHHL
Trigger: AAGGTGGTGGCGGGAATCGCAAAGGCAAGAGCAAGA...CCACCCTGGACCTGGACACCCCAGGGCAATTAGCCCTGGCCAGGAAAGCCAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp GCCCAGGCCTTGTCAAACTCAGCTAGGCCAGTGGCTGAGGAACGGAGGACACTGCCTGGAAGAGGTCTTTaGAGGGTCCCTGCTCTAGCC +
Preference number: 4 (lower is better)
Translates to: AQALSNSARPVAEERRTLPGRGL*RVPALA
Trigger: GGCTAGAGCAGGGACCCTGCAAAGACCTCTTCCAGG...CAGTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGTTTGACAAGGCCTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp CCCAGGCCTTGTCAAACTCAGCTAGGCCAGTGGCTGAGGAACGGAGGACACTGGATAACAGGCGCCCAATaGGCTGGCGCTCACATAGGC +
Preference number: 4 (lower is better)
Translates to: PRPCQTQLGQWLRNGGHWITGAQ*AGAHIG
Trigger: GCCTATGTGAGCGCCAGCCCATTGGGCGCCTGTTAT...CCAGTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGTTTGACAAGGCCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp GCCCAGGCCTTGTCAAACTCAGCTAGGCCAGTGGCTGAGGAACGGAGGACACTGATAACAGGCGCCCAATaGGCTGGCGCTCACATAGGC +
Preference number: 4 (lower is better)
Translates to: AQALSNSARPVAEERRTLITGAQ*AGAHIG
Trigger: GCCTATGTGAGCGCCAGCCCATTGGGCGCCTGTTAT...CAGTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGTTTGACAAGGCCTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp ACACCAGACTTCTTTCTCCTACATCTCGCCTCTGCCTCGGATGGGCTGCCTGGGGTAGCAATCCCTTCTTaGGGGGTGCAGTGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: TPDFFLLHLASASDGLPGVAIPS*GVQWAG
Trigger: GCCAGCCCACTGCACCCCCCAAGAAGGGATTGCTAC...CCCAGGCAGCCCATCCGAGGCAGAGGCGAGATGTAGGAGAAAGAAGTCTGGTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR CCA 90 bp TCTGCTTGCTCATCTCCACTGGGCCCTAGAAGCCTGGAGTTTGGCACTGGCTCCGTAGCAATCCCTTCTTaGGGGGTGCAGTGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: SACSSPLGPRSLEFGTGSVAIPS*GVQWAG
Trigger: GCCAGCCCACTGCACCCCCCAAGAAGGGATTGCTAC...GGAGCCAGTGCCAAACTCCAGGCTTCTAGGGCCCAGTGGAGATGAGCAAGCAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp AGCATCAGGACAGCCATCACAGTCTGGGACAGGCCAGGGCTAGGGTCCGGGGGCCCCACAGCAATCCTTTaGCGACTGAAGAGTCTCTGT +
Preference number: 4 (lower is better)
Translates to: SIRTAITVWDRPGLGSGGPTAIL*RLKSLC
Trigger: ACAGAGACTCTTCAGTCGCCAAAGGATTGCTGTGGG...GCCCCCGGACCCTAGCCCTGGCCTGTCCCAGACTGTGATGGCTGTCCTGATGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
3UTR CAA 72 bp GGCACAAGGAGACAGTTGCTAAGCAAGGTTAGCAGCTaGAAGGGGTCAGGGTGCAGGGAGGCAAGCGGCAGG +
Preference number: 4 (lower is better)
Translates to: GTRRQLLSKVSS*KGSGCREASGR
Trigger: CCTGCCGCTTGCCTCCCTGCACCCTGACCCCTTCAAGCTGCTAACCTTGCTTAGCAACTGTCTCCTTGTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
3UTR CAA 72 bp AAGGCAGACCAAGGCCAGTGTTCTGCCCAGAGAGGGTaGTGGGCTTCCCACGAGAGGCTTAGAGCAGCAGCT +
Preference number: 4 (lower is better)
Translates to: KADQGQCSAQRG*WASHERLRAAA
Trigger: AGCTGCTGCTCTAAGCCTCTCGTGGGAAGCCCACAACCCTCTCTGGGCAGAACACTGGCCTTGGTCTGCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR TCA 90 bp GCCCAGGCCTTGTCAAACTCAGCTAGGCCAGTGGCTGAGGAACGGAGGACACTGTCCTTGCTAAGAAGCTaGGAACAGAGTGAGCGCGCC +
Preference number: 4 (lower is better)
Translates to: AQALSNSARPVAEERRTLSLLRS*EQSERA
Trigger: GGCGCGCTCACTCTGTTCTCAGCTTCTTAGCAAGGA...CAGTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGTTTGACAAGGCCTGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR TCA 90 bp CCCAGGCCTTGTCAAACTCAGCTAGGCCAGTGGCTGAGGAACGGAGGACACTGGTCCTTGCTAAGAAGCTaGGAACAGAGTGAGCGCGCC +
Preference number: 4 (lower is better)
Translates to: PRPCQTQLGQWLRNGGHWSLLRS*EQSERA
Trigger: GGCGCGCTCACTCTGTTCTCAGCTTCTTAGCAAGGA...CCAGTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGTTTGACAAGGCCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp TGGCTGGCCAGCCGTGTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACCCTGGAAGAGGTCTTTaGAGGGTCCCTGCTCTAGCC +
Preference number: 4 (lower is better)
Translates to: WLASRVLRMYSHRHVAAHPGRGL*RVPALA
Trigger: GGCTAGAGCAGGGACCCTGCAAAGACCTCTTCCAGG...GTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCACACGGCTGGCCAGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp CAGTGTTCTGCCCAGAGAGGGTTGTGGGCTTCCCACGAGAGGCTTAGAGCAGCACCTGGAAGAGGTCTTTaGAGGGTCCCTGCTCTAGCC +
Preference number: 4 (lower is better)
Translates to: QCSAQRGLWASHERLRAAPGRGL*RVPALA
Trigger: GGCTAGAGCAGGGACCCTGCAAAGACCTCTTCCAGG...TGCTGCTCTAAGCCTCTCGTGGGAAGCCCACAACCCTCTCTGGGCAGAACACTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR GCA 90 bp TCTGCTTGCTCATCTCCACTGGGCCCTAGAAGCCTGGAGTTTGGCACTGGCTCCACAATGCGTTCCCGGTaGAGGTCTTCCAGGCCACAG +
Preference number: 4 (lower is better)
Translates to: SACSSPLGPRSLEFGTGSTMRSR*RSSRPQ
Trigger: CTGTGGCCTGGAAGACCTGCACCGGGAACGCATTGT...GGAGCCAGTGCCAAACTCCAGGCTTCTAGGGCCCAGTGGAGATGAGCAAGCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp TGGCTGGCCAGCCGTGTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACACAATGCGTTCCCGGTaGAGGTCTTCCAGGCCACAG +
Preference number: 4 (lower is better)
Translates to: WLASRVLRMYSHRHVAAHTMRSR*RSSRPQ
Trigger: CTGTGGCCTGGAAGACCTGCACCGGGAACGCATTGT...GTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCACACGGCTGGCCAGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp CCCAGGCCTTGTCAAACTCAGCTAGGCCAGTGGCTGAGGAACGGAGGACACTGGCGAAGCTCCTCACACTaGCTGATATGGGGGAACTGC +
Preference number: 4 (lower is better)
Translates to: PRPCQTQLGQWLRNGGHWRSSSH*LIWGNC
Trigger: GCAGTTCCCCCATATCAGCCAGTGTGAGGAGCTTCG...CCAGTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGTTTGACAAGGCCTGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp AACCAGAAGGTGGTGGCCTCAGTCCACAACAGGCAGGCACAAGTCTCACTTGGAAGGCGCCCAATGGGCTaGCGCTCACATAGGCTGTGG +
Preference number: 4 (lower is better)
Translates to: NQKVVASVHNRQAQVSLGRRPMG*RSHRLW
Trigger: CCACAGCCTATGTGAGCGCCAGCCCATTGGGCGCCT...TCCAAGTGAGACTTGTGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp GTGGACACCAGACTTCTTTCTCCTACATCTCGCCTCTGCCTCGGATGGGCTGCCATAACAGGCGCCCAATaGGCTGGCGCTCACATAGGC +
Preference number: 4 (lower is better)
Translates to: VDTRLLSPTSRLCLGWAAITGAQ*AGAHIG
Trigger: GCCTATGTGAGCGCCAGCCCATTGGGCGCCTGTTAT...GGCAGCCCATCCGAGGCAGAGGCGAGATGTAGGAGAAAGAAGTCTGGTGTCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR CCA 90 bp TCTGCTTGCTCATCTCCACTGGGCCCTAGAAGCCTGGAGTTTGGCACTGGCTCCATAACAGGCGCCCAATaGGCTGGCGCTCACATAGGC +
Preference number: 4 (lower is better)
Translates to: SACSSPLGPRSLEFGTGSITGAQ*AGAHIG
Trigger: GCCTATGTGAGCGCCAGCCCATTGGGCGCCTGTTAT...GGAGCCAGTGCCAAACTCCAGGCTTCTAGGGCCCAGTGGAGATGAGCAAGCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp CCACTGGGCCCTAGAAGCCTGGAGTTTGGCACTGGCTCCTCTTGCCAGCTCCTGATTCCTCACCACCTCTaGAGCCATGTAGCCCACAGT +
Preference number: 4 (lower is better)
Translates to: PLGPRSLEFGTGSSCQLLIPHHL*SHVAHS
Trigger: ACTGTGGGCTACATGGCTCCAGAGGTGGTGAGGAAT...CAGGAGCTGGCAAGAGGAGCCAGTGCCAAACTCCAGGCTTCTAGGGCCCAGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp TCCTGGCTTTCCTGGCCAGGGCTAATTGCCCTGGGGTGTCCAGGTCCAGGGTGGAAGACATTGAGTTCCTaGAAGCACTCGGTCTCCACC +
Preference number: 4 (lower is better)
Translates to: SWLSWPGLIALGCPGPGWKTLSS*KHSVST
Trigger: GGTGGAGACCGAGTGCTTCCAGGAACTCAATGTCTT...CCACCCTGGACCTGGACACCCCAGGGCAATTAGCCCTGGCCAGGAAAGCCAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp GGGAAAGCATTAGGCAACCAGAAGGTGGTGGCCTCAGTCCACAACAGGCAGGCAGTAGCAATCCCTTCTTaGGGGGTGCAGTGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: GKALGNQKVVASVHNRQAVAIPS*GVQWAG
Trigger: GCCAGCCCACTGCACCCCCCAAGAAGGGATTGCTAC...TGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTTGCCTAATGCTTTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR TCA 90 bp GTCCACAACAGGCAGGCACAAGTCTCACTTGGAGGTTGGTGGTGGCCAGTGCAGTCCTTGCTAAGAAGCTaGGAACAGAGTGAGCGCGCC +
Preference number: 4 (lower is better)
Translates to: VHNRQAQVSLGGWWWPVQSLLRS*EQSERA
Trigger: GGCGCGCTCACTCTGTTCTCAGCTTCTTAGCAAGGA...CTGCACTGGCCACCACCAACCTCCAAGTGAGACTTGTGCCTGCCTGTTGTGGAC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp CCCAGGCCTTGTCAAACTCAGCTAGGCCAGTGGCTGAGGAACGGAGGACACTGGTCTTGCTCTTGCCTTTaGGATTCCCGCCACCACCTT +
Preference number: 4 (lower is better)
Translates to: PRPCQTQLGQWLRNGGHWSCSCL*DSRHHL
Trigger: AAGGTGGTGGCGGGAATCGCAAAGGCAAGAGCAAGA...CCAGTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGTTTGACAAGGCCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp GGCACAAGTCTCACTTGGAGGTTGGTGGTGGCCAGTGCAGTGCTGTGGGCAGAGTCTTGCTCTTGCCTTTaGGATTCCCGCCACCACCTT +
Preference number: 4 (lower is better)
Translates to: GTSLTWRLVVASAVLWAESCSCL*DSRHHL
Trigger: AAGGTGGTGGCGGGAATCGCAAAGGCAAGAGCAAGA...CTCTGCCCACAGCACTGCACTGGCCACCACCAACCTCCAAGTGAGACTTGTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp TCTCACTTGGAGGTTGGTGGTGGCCAGTGCAGTGCTGTGGGCAGAGGTCTGACCTCTTGCTCTTGCCTTTaGGATTCCCGCCACCACCTT +
Preference number: 4 (lower is better)
Translates to: SHLEVGGGQCSAVGRGLTSCSCL*DSRHHL
Trigger: AAGGTGGTGGCGGGAATCGCAAAGGCAAGAGCAAGA...GGTCAGACCTCTGCCCACAGCACTGCACTGGCCACCACCAACCTCCAAGTGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp TCCTGGCTTTCCTGGCCAGGGCTAATTGCCCTGGGGTGTCCAGGTCCAGGGTGGTTTTTGGTCACTGGTTaGCTTTCCAGCCACTTCCAC +
Preference number: 4 (lower is better)
Translates to: SWLSWPGLIALGCPGPGWFLVTG*LSSHFH
Trigger: GTGGAAGTGGCTGGAAAGGCAACCAGTGACCAAAAA...CCACCCTGGACCTGGACACCCCAGGGCAATTAGCCCTGGCCAGGAAAGCCAGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp GGCAGGCACAAGTCTCACTTGGAGGTTGGTGGTGGCCAGTGCAGTGCTGTGGGCATAGAAGACAGCACGTaGTTCAGGAAAGCCAGCCTG +
Preference number: 4 (lower is better)
Translates to: GRHKSHLEVGGGQCSAVGIEDST*FRKASL
Trigger: CAGGCTGGCTTTCCTGAAGCACGTGCTGTCTTCTAT...GCCCACAGCACTGCACTGGCCACCACCAACCTCCAAGTGAGACTTGTGCCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
CDS-3UTR GCA 90 bp TGGACACCAGACTTCTTTCTCCTACATCTCGCCTCTGCCTCGGATGGGCTGCCTACAATGCGTTCCCGGTaGAGGTCTTCCAGGCCACAG +
Preference number: 4 (lower is better)
Translates to: WTPDFFLLHLASASDGLPTMRSR*RSSRPQ
Trigger: CTGTGGCCTGGAAGACCTGCACCGGGAACGCATTGT...AGGCAGCCCATCCGAGGCAGAGGCGAGATGTAGGAGAAAGAAGTCTGGTGTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR CCA 90 bp GCTGTGTTCCACAATCCACGGCTTGCGTGGAAAATGGGGAACACCACTGTGCAAGTGCTCAGGTACTCGTaGGTCAGCCGGGTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: AVFHNPRLAWKMGNTTVQVLRYS*VSRVSS
Trigger: GGAGCTGACCCGGCTGACCCACGAGTACCTGAGCAC...TTGCACAGTGGTGTTCCCCATTTTCCACGCAAGCCGTGGATTGTGGAACACAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp GGCACAAGTCTCACTTGGAGGTTGGTGGTGGCCAGTGCAGTGCTGTGGGCAGAGTCCGAGATCCGAATGTaGCCATGGTCATCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: GTSLTWRLVVASAVLWAESEIRM*PWSSRR
Trigger: CCTTCTGGATGACCATGGCCACATTCGGATCTCGGA...CTCTGCCCACAGCACTGCACTGGCCACCACCAACCTCCAAGTGAGACTTGTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp CACCAGACTTCTTTCTCCTACATCTCGCCTCTGCCTCGGATGGGCTGCCTGGGGTCCGAGATCCGAATGTaGCCATGGTCATCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: HQTSFSYISPLPRMGCLGSEIRM*PWSSRR
Trigger: CCTTCTGGATGACCATGGCCACATTCGGATCTCGGA...CCCCAGGCAGCCCATCCGAGGCAGAGGCGAGATGTAGGAGAAAGAAGTCTGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR CCA 90 bp CCCAGGCCTTGTCAAACTCAGCTAGGCCAGTGGCTGAGGAACGGAGGACACTGGTCCGAGATCCGAATGTaGCCATGGTCATCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: PRPCQTQLGQWLRNGGHWSEIRM*PWSSRR
Trigger: CCTTCTGGATGACCATGGCCACATTCGGATCTCGGA...CCAGTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGTTTGACAAGGCCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp CCCAGGCCTTGTCAAACTCAGCTAGGCCAGTGGCTGAGGAACGGAGGACACTGGATTCCTCACCACCTCTaGAGCCATGTAGCCCACAGT +
Preference number: 4 (lower is better)
Translates to: PRPCQTQLGQWLRNGGHWIPHHL*SHVAHS
Trigger: ACTGTGGGCTACATGGCTCCAGAGGTGGTGAGGAAT...CCAGTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGTTTGACAAGGCCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp ATTAGGCAACCAGAAGGTGGTGGCCTCAGTCCACAACAGGCAGGCACAAGTCTCGTAGCAATCCCTTCTTaGGGGGTGCAGTGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: IRQPEGGGLSPQQAGTSLVAIPS*GVQWAG
Trigger: GCCAGCCCACTGCACCCCCCAAGAAGGGATTGCTAC...GAGACTTGTGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTTGCCTAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR TCA 90 bp AAGATCTGTCAGAGCAAGGCCTCTGTCCATCCCCCTGGACAGACTCTGGCACAATGCTGGAAGGGCGACTaGCCTGCGATCATCTCGTAC +
Preference number: 4 (lower is better)
Translates to: KICQSKASVHPPGQTLAQCWKGD*PAIISY
Trigger: GTACGAGATGATCGCAGGTCAGTCGCCCTTCCAGCA...TTGTGCCAGAGTCTGTCCAGGGGGATGGACAGAGGCCTTGCTCTGACAGATCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR TCA 90 bp TGGACACCAGACTTCTTTCTCCTACATCTCGCCTCTGCCTCGGATGGGCTGCCTTCCTTGCTAAGAAGCTaGGAACAGAGTGAGCGCGCC +
Preference number: 4 (lower is better)
Translates to: WTPDFFLLHLASASDGLPSLLRS*EQSERA
Trigger: GGCGCGCTCACTCTGTTCTCAGCTTCTTAGCAAGGA...AGGCAGCCCATCCGAGGCAGAGGCGAGATGTAGGAGAAAGAAGTCTGGTGTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR CCA 90 bp TGGCTGGCCAGCCGTGTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACATTCCTCACCACCTCTaGAGCCATGTAGCCCACAGT +
Preference number: 4 (lower is better)
Translates to: WLASRVLRMYSHRHVAAHIPHHL*SHVAHS
Trigger: ACTGTGGGCTACATGGCTCCAGAGGTGGTGAGGAAT...GTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCACACGGCTGGCCAGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp CACCAGACTTCTTTCTCCTACATCTCGCCTCTGCCTCGGATGGGCTGCCTGGGGAAGACATTGAGTTCCTaGAAGCACTCGGTCTCCACC +
Preference number: 4 (lower is better)
Translates to: HQTSFSYISPLPRMGCLGKTLSS*KHSVST
Trigger: GGTGGAGACCGAGTGCTTCCAGGAACTCAATGTCTT...CCCCAGGCAGCCCATCCGAGGCAGAGGCGAGATGTAGGAGAAAGAAGTCTGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR CCA 90 bp CCCAGGCCTTGTCAAACTCAGCTAGGCCAGTGGCTGAGGAACGGAGGACACTGGAAGACATTGAGTTCCTaGAAGCACTCGGTCTCCACC +
Preference number: 4 (lower is better)
Translates to: PRPCQTQLGQWLRNGGHWKTLSS*KHSVST
Trigger: GGTGGAGACCGAGTGCTTCCAGGAACTCAATGTCTT...CCAGTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGTTTGACAAGGCCTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp GCTGTGTTCCACAATCCACGGCTTGCGTGGAAAATGGGGAACACCACTGTGCAAGTAGCAATCCCTTCTTaGGGGGTGCAGTGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: AVFHNPRLAWKMGNTTVQVAIPS*GVQWAG
Trigger: GCCAGCCCACTGCACCCCCCAAGAAGGGATTGCTAC...TTGCACAGTGGTGTTCCCCATTTTCCACGCAAGCCGTGGATTGTGGAACACAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR TCA 90 bp GCTGTGTTCCACAATCCACGGCTTGCGTGGAAAATGGGGAACACCACTGTGCAATGCTGGAAGGGCGACTaGCCTGCGATCATCTCGTAC +
Preference number: 4 (lower is better)
Translates to: AVFHNPRLAWKMGNTTVQCWKGD*PAIISY
Trigger: GTACGAGATGATCGCAGGTCAGTCGCCCTTCCAGCA...TTGCACAGTGGTGTTCCCCATTTTCCACGCAAGCCGTGGATTGTGGAACACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR TCA 90 bp ATTAGGCAACCAGAAGGTGGTGGCCTCAGTCCACAACAGGCAGGCACAAGTCTCTCCTTGCTAAGAAGCTaGGAACAGAGTGAGCGCGCC +
Preference number: 4 (lower is better)
Translates to: IRQPEGGGLSPQQAGTSLSLLRS*EQSERA
Trigger: GGCGCGCTCACTCTGTTCTCAGCTTCTTAGCAAGGA...GAGACTTGTGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTTGCCTAAT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR TCA 90 bp GGCACAAGTCTCACTTGGAGGTTGGTGGTGGCCAGTGCAGTGCTGTGGGCAGAGAGCAATCTTGGCGACTaGAGAGTCTCTGTAGCAATC +
Preference number: 4 (lower is better)
Translates to: GTSLTWRLVVASAVLWAESNLGD*RVSVAI
Trigger: GATTGCTACAGAGACTCTTCAGTCGCCAAGATTGCT...CTCTGCCCACAGCACTGCACTGGCCACCACCAACCTCCAAGTGAGACTTGTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp GCCCAGGCCTTGTCAAACTCAGCTAGGCCAGTGGCTGAGGAACGGAGGACACTGTTTTTGGTCACTGGTTaGCTTTCCAGCCACTTCCAC +
Preference number: 4 (lower is better)
Translates to: AQALSNSARPVAEERRTLFLVTG*LSSHFH
Trigger: GTGGAAGTGGCTGGAAAGGCAACCAGTGACCAAAAA...CAGTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGTTTGACAAGGCCTGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp GCTGTGTTCCACAATCCACGGCTTGCGTGGAAAATGGGGAACACCACTGTGCAAACAATGCGTTCCCGGTaGAGGTCTTCCAGGCCACAG +
Preference number: 4 (lower is better)
Translates to: AVFHNPRLAWKMGNTTVQTMRSR*RSSRPQ
Trigger: CTGTGGCCTGGAAGACCTGCACCGGGAACGCATTGT...TTGCACAGTGGTGTTCCCCATTTTCCACGCAAGCCGTGGATTGTGGAACACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp GCTGTGTTCCACAATCCACGGCTTGCGTGGAAAATGGGGAACACCACTGTGCAAATAACAGGCGCCCAATaGGCTGGCGCTCACATAGGC +
Preference number: 4 (lower is better)
Translates to: AVFHNPRLAWKMGNTTVQITGAQ*AGAHIG
Trigger: GCCTATGTGAGCGCCAGCCCATTGGGCGCCTGTTAT...TTGCACAGTGGTGTTCCCCATTTTCCACGCAAGCCGTGGATTGTGGAACACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp GGGAAAGCATTAGGCAACCAGAAGGTGGTGGCCTCAGTCCACAACAGGCAGGCATCCGAGATCCGAATGTaGCCATGGTCATCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: GKALGNQKVVASVHNRQASEIRM*PWSSRR
Trigger: CCTTCTGGATGACCATGGCCACATTCGGATCTCGGA...TGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTTGCCTAATGCTTTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp AGGACTACTGTGCTCTGGGAGCTGGAAGGCAGAAAGCGACCCATCTCGGGCAGTAAGACATTGAGTTCCTaGAAGCACTCGGTCTCCACC +
Preference number: 4 (lower is better)
Translates to: RTTVLWELEGRKRPISGSKTLSS*KHSVST
Trigger: GGTGGAGACCGAGTGCTTCCAGGAACTCAATGTCTT...ACTGCCCGAGATGGGTCGCTTTCTGCCTTCCAGCTCCCAGAGCACAGTAGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR TCA 90 bp CCGTGTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACATTGGTCACATCCCACCAGTCAGGACTaGACGTGTAGCGCTCATTCC +
Preference number: 4 (lower is better)
Translates to: PCAQNVFAQTRGSSHWSHPTSQD*TCSAHS
Trigger: GGAATGAGCGCTACACGTTCAGTCCTGACTGGTGGG...ATGTGACCAATGTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCACACGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR TCA 90 bp GGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTATGGCCTGGACTGGTGCTGGAAGGGCGACTaGCCTGCGATCATCTCGTAC +
Preference number: 4 (lower is better)
Translates to: GILECWRANSNSSYGLDWCWKGD*PAIISY
Trigger: GTACGAGATGATCGCAGGTCAGTCGCCCTTCCAGCA...CCAGTCCAGGCCATAGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp TGGCTGGCCAGCCGTGTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACTTTTTGGTCACTGGTTaGCTTTCCAGCCACTTCCAC +
Preference number: 4 (lower is better)
Translates to: WLASRVLRMYSHRHVAAHFLVTG*LSSHFH
Trigger: GTGGAAGTGGCTGGAAAGGCAACCAGTGACCAAAAA...GTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCACACGGCTGGCCAGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp GGGAAAGCATTAGGCAACCAGAAGGTGGTGGCCTCAGTCCACAACAGGCAGGCAATAGAAGACAGCACGTaGTTCAGGAAAGCCAGCCTG +
Preference number: 4 (lower is better)
Translates to: GKALGNQKVVASVHNRQAIEDST*FRKASL
Trigger: CAGGCTGGCTTTCCTGAAGCACGTGCTGTCTTCTAT...TGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTTGCCTAATGCTTTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
CDS-3UTR GCA 90 bp TGGACACCAGACTTCTTTCTCCTACATCTCGCCTCTGCCTCGGATGGGCTGCCTATAGAAGACAGCACGTaGTTCAGGAAAGCCAGCCTG +
Preference number: 4 (lower is better)
Translates to: WTPDFFLLHLASASDGLPIEDST*FRKASL
Trigger: CAGGCTGGCTTTCCTGAAGCACGTGCTGTCTTCTAT...AGGCAGCCCATCCGAGGCAGAGGCGAGATGTAGGAGAAAGAAGTCTGGTGTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR GCA 90 bp CCGTGTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACATTGGTCACATACAATGCGTTCCCGGTaGAGGTCTTCCAGGCCACAG +
Preference number: 4 (lower is better)
Translates to: PCAQNVFAQTRGSSHWSHTMRSR*RSSRPQ
Trigger: CTGTGGCCTGGAAGACCTGCACCGGGAACGCATTGT...ATGTGACCAATGTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCACACGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp CAGCTAAGTCTGGGGTTAAACTATGTCCCAGTCCTAGAGGATACAAAGACCCCAAGGCGCCCAATGGGCTaGCGCTCACATAGGCTGTGG +
Preference number: 4 (lower is better)
Translates to: QLSLGLNYVPVLEDTKTPRRPMG*RSHRLW
Trigger: CCACAGCCTATGTGAGCGCCAGCCCATTGGGCGCCT...TGGGGTCTTTGTATCCTCTAGGACTGGGACATAGTTTAACCCCAGACTTAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp ATTAGGCAACCAGAAGGTGGTGGCCTCAGTCCACAACAGGCAGGCACAAGTCTCATTCCTCACCACCTCTaGAGCCATGTAGCCCACAGT +
Preference number: 4 (lower is better)
Translates to: IRQPEGGGLSPQQAGTSLIPHHL*SHVAHS
Trigger: ACTGTGGGCTACATGGCTCCAGAGGTGGTGAGGAAT...GAGACTTGTGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTTGCCTAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp GCAAGCGGCAGGGAAGGAGCGGGTAAGGTGGACACCAGACTTCTTTCTCCTACATTTTTGGTCACTGGTTaGCTTTCCAGCCACTTCCAC +
Preference number: 4 (lower is better)
Translates to: ASGREGAGKVDTRLLSPTFLVTG*LSSHFH
Trigger: GTGGAAGTGGCTGGAAAGGCAACCAGTGACCAAAAA...TGTAGGAGAAAGAAGTCTGGTGTCCACCTTACCCGCTCCTTCCCTGCCGCTTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR CCA 90 bp GGGTTAAACTATGTCCCAGTCCTAGAGGATACAAAGACCCCAGCTCCAACCCTGCGAAGCTCCTCACACTaGCTGATATGGGGGAACTGC +
Preference number: 4 (lower is better)
Translates to: GLNYVPVLEDTKTPAPTLRSSSH*LIWGNC
Trigger: GCAGTTCCCCCATATCAGCCAGTGTGAGGAGCTTCG...CAGGGTTGGAGCTGGGGTCTTTGTATCCTCTAGGACTGGGACATAGTTTAACCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp TCCCACTCAGCTAAGTCTGGGGTTAAACTATGTCCCAGTCCTAGAGGATACAAAAGGCGCCCAATGGGCTaGCGCTCACATAGGCTGTGG +
Preference number: 4 (lower is better)
Translates to: SHSAKSGVKLCPSPRGYKRRPMG*RSHRLW
Trigger: CCACAGCCTATGTGAGCGCCAGCCCATTGGGCGCCT...TTTGTATCCTCTAGGACTGGGACATAGTTTAACCCCAGACTTAGCTGAGTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp CAGCTTACATTGGCTTTAAATATGGAAAAGCCAGGGCCTTATGGTCCCATGCTGGTGCTCAGGTACTCGTaGGTCAGCCGGGTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: QLTLALNMEKPGPYGPMLVLRYS*VSRVSS
Trigger: GGAGCTGACCCGGCTGACCCACGAGTACCTGAGCAC...CAGCATGGGACCATAAGGCCCTGGCTTTTCCATATTTAAAGCCAATGTAAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR TCA 90 bp AACCAGAAGGTGGTGGCCTCAGTCCACAACAGGCAGGCACAAGTCTCACTTGGACAATCCTTTGGCGACTaGAGAGTCTCTGTAGCAATC +
Preference number: 4 (lower is better)
Translates to: NQKVVASVHNRQAQVSLGQSFGD*RVSVAI
Trigger: GATTGCTACAGAGACTCTTCAGTCGCCAAAGGATTG...TCCAAGTGAGACTTGTGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
CDS-3UTR GCA 90 bp CAGCTAAGTCTGGGGTTAAACTATGTCCCAGTCCTAGAGGATACAAAGACCCCACCTGGAAGAGGTCTTTaGAGGGTCCCTGCTCTAGCC +
Preference number: 4 (lower is better)
Translates to: QLSLGLNYVPVLEDTKTPPGRGL*RVPALA
Trigger: GGCTAGAGCAGGGACCCTGCAAAGACCTCTTCCAGG...TGGGGTCTTTGTATCCTCTAGGACTGGGACATAGTTTAACCCCAGACTTAGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp GCTGTGTTCCACAATCCACGGCTTGCGTGGAAAATGGGGAACACCACTGTGCAAATAGAAGACAGCACGTaGTTCAGGAAAGCCAGCCTG +
Preference number: 4 (lower is better)
Translates to: AVFHNPRLAWKMGNTTVQIEDST*FRKASL
Trigger: CAGGCTGGCTTTCCTGAAGCACGTGCTGTCTTCTAT...TTGCACAGTGGTGTTCCCCATTTTCCACGCAAGCCGTGGATTGTGGAACACAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
CDS-3UTR CCA 90 bp CAGCTTACATTGGCTTTAAATATGGAAAAGCCAGGGCCTTATGGTCCCATGCTGGTAGCAATCCCTTCTTaGGGGGTGCAGTGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: QLTLALNMEKPGPYGPMLVAIPS*GVQWAG
Trigger: GCCAGCCCACTGCACCCCCCAAGAAGGGATTGCTAC...CAGCATGGGACCATAAGGCCCTGGCTTTTCCATATTTAAAGCCAATGTAAGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR TCA 90 bp CAGCTTACATTGGCTTTAAATATGGAAAAGCCAGGGCCTTATGGTCCCATGCTGCCCACCAGTCAGGACTaGACGTGTAGCGCTCATTCC +
Preference number: 4 (lower is better)
Translates to: QLTLALNMEKPGPYGPMLPTSQD*TCSAHS
Trigger: GGAATGAGCGCTACACGTTCAGTCCTGACTGGTGGG...CAGCATGGGACCATAAGGCCCTGGCTTTTCCATATTTAAAGCCAATGTAAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR TCA 90 bp GCTGTGTTCCACAATCCACGGCTTGCGTGGAAAATGGGGAACACCACTGTGCAAAGCAATCTTGGCGACTaGAGAGTCTCTGTAGCAATC +
Preference number: 4 (lower is better)
Translates to: AVFHNPRLAWKMGNTTVQSNLGD*RVSVAI
Trigger: GATTGCTACAGAGACTCTTCAGTCGCCAAGATTGCT...TTGCACAGTGGTGTTCCCCATTTTCCACGCAAGCCGTGGATTGTGGAACACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224118.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp ACTGAAGTAAGACTAGGAAGCTCCCAAGATCTGTCAGAGCAAGGCCTCTGTCCATCTTGCTCTTGCCTTTaGGATTCCCGCCACCACCTT +
Preference number: 4 (lower is better)
Translates to: TEVRLGSSQDLSEQGLCPSCSCL*DSRHHL
Trigger: AAGGTGGTGGCGGGAATCGCAAAGGCAAGAGCAAGA...TGGACAGAGGCCTTGCTCTGACAGATCTTGGGAGCTTCCTAGTCTTACTTCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR GCA 90 bp CAGCTTACATTGGCTTTAAATATGGAAAAGCCAGGGCCTTATGGTCCCATGCTGACAATGCGTTCCCGGTaGAGGTCTTCCAGGCCACAG +
Preference number: 4 (lower is better)
Translates to: QLTLALNMEKPGPYGPMLTMRSR*RSSRPQ
Trigger: CTGTGGCCTGGAAGACCTGCACCGGGAACGCATTGT...CAGCATGGGACCATAAGGCCCTGGCTTTTCCATATTTAAAGCCAATGTAAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp CAGCTTACATTGGCTTTAAATATGGAAAAGCCAGGGCCTTATGGTCCCATGCTGGTACATCTTGCCTGTTaGCCGCACCTCCCCAAAGCC +
Preference number: 4 (lower is better)
Translates to: QLTLALNMEKPGPYGPMLVHLAC*PHLPKA
Trigger: GGCTTTGGGGAGGTGCGGGCAACAGGCAAGATGTAC...CAGCATGGGACCATAAGGCCCTGGCTTTTCCATATTTAAAGCCAATGTAAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224995.2
CDS-3UTR CCA 90 bp GTCTACTTTTATGAGGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTGTGCTCAGGTACTCGTaGGTCAGCCGGGTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: VYFYEGFWNVGGLILTPPVLRYS*VSRVSS
Trigger: GGAGCTGACCCGGCTGACCCACGAGTACCTGAGCAC...AGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCCTCATAAAAGTAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp ACTGAAGTAAGACTAGGAAGCTCCCAAGATCTGTCAGAGCAAGGCCTCTGTCCAATTCCTCACCACCTCTaGAGCCATGTAGCCCACAGT +
Preference number: 4 (lower is better)
Translates to: TEVRLGSSQDLSEQGLCPIPHHL*SHVAHS
Trigger: ACTGTGGGCTACATGGCTCCAGAGGTGGTGAGGAAT...TGGACAGAGGCCTTGCTCTGACAGATCTTGGGAGCTTCCTAGTCTTACTTCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR CCA 90 bp GGGTTAAACTATGTCCCAGTCCTAGAGGATACAAAGACCCCAGCTCCAACCCTGAAGACATTGAGTTCCTaGAAGCACTCGGTCTCCACC +
Preference number: 4 (lower is better)
Translates to: GLNYVPVLEDTKTPAPTLKTLSS*KHSVST
Trigger: GGTGGAGACCGAGTGCTTCCAGGAACTCAATGTCTT...CAGGGTTGGAGCTGGGGTCTTTGTATCCTCTAGGACTGGGACATAGTTTAACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp GCTGTGTTCCACAATCCACGGCTTGCGTGGAAAATGGGGAACACCACTGTGCAATTCCCACAGCAATCTTaGCGACTGAAGAGTCTCTGT +
Preference number: 4 (lower is better)
Translates to: AVFHNPRLAWKMGNTTVQFPQQS*RLKSLC
Trigger: ACAGAGACTCTTCAGTCGCCAAGATTGCTGTGGGAA...TTGCACAGTGGTGTTCCCCATTTTCCACGCAAGCCGTGGATTGTGGAACACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224118.2
ENSMUST00000225925.2
CDS-3UTR TCA 90 bp CAGCTTACATTGGCTTTAAATATGGAAAAGCCAGGGCCTTATGGTCCCATGCTGTCCTTGCTAAGAAGCTaGGAACAGAGTGAGCGCGCC +
Preference number: 4 (lower is better)
Translates to: QLTLALNMEKPGPYGPMLSLLRS*EQSERA
Trigger: GGCGCGCTCACTCTGTTCTCAGCTTCTTAGCAAGGA...CAGCATGGGACCATAAGGCCCTGGCTTTTCCATATTTAAAGCCAATGTAAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp ATTATTGCTGGGCATGTGTCTACTTTTATGAGGGATTCTGGAATGTTGGAGGGCTGCATGCGTACATCTTaGCTGTTGCCCGCACCTCCC +
Preference number: 4 (lower is better)
Translates to: IIAGHVSTFMRDSGMLEGCMRTS*LLPAPP
Trigger: GGGAGGTGCGGGCAACAGGCAAGATGTACGCATGCA...GCCCTCCAACATTCCAGAATCCCTCATAAAAGTAGACACATGCCCAGCAATAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224995.2
CDS-3UTR CCA 90 bp TCCCACTCAGCTAAGTCTGGGGTTAAACTATGTCCCAGTCCTAGAGGATACAAACGAAGCTCCTCACACTaGCTGATATGGGGGAACTGC +
Preference number: 4 (lower is better)
Translates to: SHSAKSGVKLCPSPRGYKRSSSH*LIWGNC
Trigger: GCAGTTCCCCCATATCAGCCAGTGTGAGGAGCTTCG...TTTGTATCCTCTAGGACTGGGACATAGTTTAACCCCAGACTTAGCTGAGTGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp TACTTTTATGAGGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTATGAGGCGCCCAATGGGCTaGCGCTCACATAGGCTGTGG +
Preference number: 4 (lower is better)
Translates to: YFYEGFWNVGGLILTPPMRRPMG*RSHRLW
Trigger: CCACAGCCTATGTGAGCGCCAGCCCATTGGGCGCCT...CATAGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCCTCATAAAAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp CAGCTAAGTCTGGGGTTAAACTATGTCCCAGTCCTAGAGGATACAAAGACCCCATCCGAGATCCGAATGTaGCCATGGTCATCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: QLSLGLNYVPVLEDTKTPSEIRM*PWSSRR
Trigger: CCTTCTGGATGACCATGGCCACATTCGGATCTCGGA...TGGGGTCTTTGTATCCTCTAGGACTGGGACATAGTTTAACCCCAGACTTAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR GCA 90 bp CAGCTAAGTCTGGGGTTAAACTATGTCCCAGTCCTAGAGGATACAAAGACCCCAATAGAAGACAGCACGTaGTTCAGGAAAGCCAGCCTG +
Preference number: 4 (lower is better)
Translates to: QLSLGLNYVPVLEDTKTPIEDST*FRKASL
Trigger: CAGGCTGGCTTTCCTGAAGCACGTGCTGTCTTCTAT...TGGGGTCTTTGTATCCTCTAGGACTGGGACATAGTTTAACCCCAGACTTAGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
CDS-3UTR CCA 90 bp GTCTACTTTTATGAGGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTATAACAGGCGCCCAATaGGCTGGCGCTCACATAGGC +
Preference number: 4 (lower is better)
Translates to: VYFYEGFWNVGGLILTPPITGAQ*AGAHIG
Trigger: GCCTATGTGAGCGCCAGCCCATTGGGCGCCTGTTAT...AGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCCTCATAAAAGTAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp TCCCACTCAGCTAAGTCTGGGGTTAAACTATGTCCCAGTCCTAGAGGATACAAATCCGAGATCCGAATGTaGCCATGGTCATCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: SHSAKSGVKLCPSPRGYKSEIRM*PWSSRR
Trigger: CCTTCTGGATGACCATGGCCACATTCGGATCTCGGA...TTTGTATCCTCTAGGACTGGGACATAGTTTAACCCCAGACTTAGCTGAGTGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp GTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACATTGGTCACATAGAGTTCCCACAGCAATCTTaGCGACTGAAGAGTCTCTGT +
Preference number: 4 (lower is better)
Translates to: VLRMYSHRHVAAHIGHIEFPQQS*RLKSLC
Trigger: ACAGAGACTCTTCAGTCGCCAAGATTGCTGTGGGAA...CTCTATGTGACCAATGTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225925.2
CDS-3UTR TCA 90 bp TACTTTTATGAGGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTATGCCCACCAGTCAGGACTaGACGTGTAGCGCTCATTCC +
Preference number: 4 (lower is better)
Translates to: YFYEGFWNVGGLILTPPMPTSQD*TCSAHS
Trigger: GGAATGAGCGCTACACGTTCAGTCCTGACTGGTGGG...CATAGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCCTCATAAAAGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR TCA 90 bp AACTATGTCCCAGTCCTAGAGGATACAAAGACCCCAGCTCCAACCCTGACAAATCAATCCTTTGGCGACTaGAGAGTCTCTGTAGCAATC +
Preference number: 4 (lower is better)
Translates to: NYVPVLEDTKTPAPTLTNQSFGD*RVSVAI
Trigger: GATTGCTACAGAGACTCTTCAGTCGCCAAAGGATTG...ATTTGTCAGGGTTGGAGCTGGGGTCTTTGTATCCTCTAGGACTGGGACATAGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
CDS-3UTR TCA 90 bp TCCCACTCAGCTAAGTCTGGGGTTAAACTATGTCCCAGTCCTAGAGGATACAAACAATCCTTTGGCGACTaGAGAGTCTCTGTAGCAATC +
Preference number: 4 (lower is better)
Translates to: SHSAKSGVKLCPSPRGYKQSFGD*RVSVAI
Trigger: GATTGCTACAGAGACTCTTCAGTCGCCAAAGGATTG...TTTGTATCCTCTAGGACTGGGACATAGTTTAACCCCAGACTTAGCTGAGTGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
CDS-3UTR CCA 90 bp TACTTTTATGAGGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTATGATTCCTCACCACCTCTaGAGCCATGTAGCCCACAGT +
Preference number: 4 (lower is better)
Translates to: YFYEGFWNVGGLILTPPMIPHHL*SHVAHS
Trigger: ACTGTGGGCTACATGGCTCCAGAGGTGGTGAGGAAT...CATAGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCCTCATAAAAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp GTCTACTTTTATGAGGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTAAGACATTGAGTTCCTaGAAGCACTCGGTCTCCACC +
Preference number: 4 (lower is better)
Translates to: VYFYEGFWNVGGLILTPPKTLSS*KHSVST
Trigger: GGTGGAGACCGAGTGCTTCCAGGAACTCAATGTCTT...AGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCCTCATAAAAGTAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CCA 90 bp GTCTACTTTTATGAGGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTCCCACAGCAATCCTTTaGCGACTGAAGAGTCTCTGT +
Preference number: 4 (lower is better)
Translates to: VYFYEGFWNVGGLILTPPPTAIL*RLKSLC
Trigger: ACAGAGACTCTTCAGTCGCCAAAGGATTGCTGTGGG...AGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCCTCATAAAAGTAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
CDS-3UTR CCA 90 bp TACTTTTATGAGGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTATGCCCACAGCAATCCTTTaGCGACTGAAGAGTCTCTGT +
Preference number: 4 (lower is better)
Translates to: YFYEGFWNVGGLILTPPMPTAIL*RLKSLC
Trigger: ACAGAGACTCTTCAGTCGCCAAAGGATTGCTGTGGG...CATAGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCCTCATAAAAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
CDS-3UTR GCA 90 bp TACTTTTATGAGGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTATGTTTTTGGTCACTGGTTaGCTTTCCAGCCACTTCCAC +
Preference number: 4 (lower is better)
Translates to: YFYEGFWNVGGLILTPPMFLVTG*LSSHFH
Trigger: GTGGAAGTGGCTGGAAAGGCAACCAGTGACCAAAAA...CATAGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCCTCATAAAAGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
3UTR CAA 72 bp TCACATTGGTCACATAGAGACACATGGCAGCTTACATaGGCTTTAAATATGGAAAAGCCAGGGCCTTATGGT +
Preference number: 4 (lower is better)
Translates to: SHWSHRDTWQLT*ALNMEKPGPYG
Trigger: ACCATAAGGCCCTGGCTTTTCCATATTTAAAGCCAATGTAAGCTGCCATGTGTCTCTATGTGACCAATGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS GCA 90 bp TCAGGTACTCGTGGGTCAGCCGGGTCAGCTCCTGGAAGAGGTCTTTaGAGGGTCCCTGCTCTAGCCGCTGGGCACAGTTACTCACCAGCT +
Preference number: 5 (lower is better)
Translates to: SGTRGSAGSAPGRGL*RVPALAAGHSYSPA
Trigger: AGCTGGTGAGTAACTGTGCCCAGCGGCTAGAGCAGGGACCCTGCAAAGACCTCTTCCAGGAGCTGACCCGGCTGACCCACGAGTACCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000001115.16
ENSMUST00000099482.5
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CAA 90 bp CCCAGAGAGGGTTGTGGGCTTCCCACGAGAGGCTTAGAGCAGCAGCTCGGCCAATCCTGGAAGAGGTCTTaGCAGGGTCCCTGCTCTAGC +
Preference number: 5 (lower is better)
Translates to: PREGCGLPTRGLEQQLGQSWKRS*QGPCSS
Trigger: GCTAGAGCAGGGACCCTGCAAAGACCTCTTCCAGGA...TTGGCCGAGCTGCTGCTCTAAGCCTCTCGTGGGAAGCCCACAACCCTCTCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR CAA 90 bp TCGGATGGGCTGCCTGGGGCTCCCCACAGTCAGGCAGCAAGGCCAACCCATGGGGTTTTTGGTCACTGGTaGCCTTTCCAGCCACTTCCA +
Preference number: 5 (lower is better)
Translates to: SDGLPGAPHSQAARPTHGVFGHW*PFQPLP
Trigger: TGGAAGTGGCTGGAAAGGCAACCAGTGACCAAAAAC...CCCATGGGTTGGCCTTGCTGCCTGACTGTGGGGAGCCCCAGGCAGCCCATCCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR CAA 90 bp CCCAGGCCTTGTCAAACTCAGCTAGGCCAGTGGCTGAGGAACGGAGGACACTGGTCCTGGAAGAGGTCTTaGCAGGGTCCCTGCTCTAGC +
Preference number: 5 (lower is better)
Translates to: PRPCQTQLGQWLRNGGHWSWKRS*QGPCSS
Trigger: GCTAGAGCAGGGACCCTGCAAAGACCTCTTCCAGGA...CCAGTGTCCTCCGTTCCTCAGCCACTGGCCTAGCTGAGTTTGACAAGGCCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CAA 90 bp TGCCAGCTCCTGGCTTTCCTGGCCAGGGCTAATTGCCCTGGGGTGTCCAGGTCCTCCCACAGCAATCCTTaGGCGACTGAAGAGTCTCTG +
Preference number: 5 (lower is better)
Translates to: CQLLAFLARANCPGVSRSSHSNP*ATEESL
Trigger: CAGAGACTCTTCAGTCGCCAAAGGATTGCTGTGGGA...GGACCTGGACACCCCAGGGCAATTAGCCCTGGCCAGGAAAGCCAGGAGCTGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
CDS-3UTR CAA 90 bp GTTCTGCCCAGAGAGGGTTGTGGGCTTCCCACGAGAGGCTTAGAGCAGCAGCTCTTCTTGCTCTTGCCTTaGCGATTCCCGCCACCACCT +
Preference number: 5 (lower is better)
Translates to: VLPREGCGLPTRGLEQQLFLLLP*RFPPPP
Trigger: AGGTGGTGGCGGGAATCGCAAAGGCAAGAGCAAGAA...GAGCTGCTGCTCTAAGCCTCTCGTGGGAAGCCCACAACCCTCTCTGGGCAGAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR CAA 90 bp GGCACAAGTCTCACTTGGAGGTTGGTGGTGGCCAGTGCAGTGCTGTGGGCAGAGTTCTTGCTCTTGCCTTaGCGATTCCCGCCACCACCT +
Preference number: 5 (lower is better)
Translates to: GTSLTWRLVVASAVLWAEFLLLP*RFPPPP
Trigger: AGGTGGTGGCGGGAATCGCAAAGGCAAGAGCAAGAA...CTCTGCCCACAGCACTGCACTGGCCACCACCAACCTCCAAGTGAGACTTGTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CAA 90 bp TGCCAGCTCCTGGCTTTCCTGGCCAGGGCTAATTGCCCTGGGGTGTCCAGGTCCGTTTTTGGTCACTGGTaGCCTTTCCAGCCACTTCCA +
Preference number: 5 (lower is better)
Translates to: CQLLAFLARANCPGVSRSVFGHW*PFQPLP
Trigger: TGGAAGTGGCTGGAAAGGCAACCAGTGACCAAAAAC...GGACCTGGACACCCCAGGGCAATTAGCCCTGGCCAGGAAAGCCAGGAGCTGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CAA 90 bp CCTCAGTCCACAACAGGCAGGCACAAGTCTCACTTGGAGGTTGGTGGTGGCCAGTTCTTGCTCTTGCCTTaGCGATTCCCGCCACCACCT +
Preference number: 5 (lower is better)
Translates to: PQSTTGRHKSHLEVGGGQFLLLP*RFPPPP
Trigger: AGGTGGTGGCGGGAATCGCAAAGGCAAGAGCAAGAA...CTGGCCACCACCAACCTCCAAGTGAGACTTGTGCCTGCCTGTTGTGGACTGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CAA 90 bp GGGAAAGCATTAGGCAACCAGAAGGTGGTGGCCTCAGTCCACAACAGGCAGGCATCCTGGAAGAGGTCTTaGCAGGGTCCCTGCTCTAGC +
Preference number: 5 (lower is better)
Translates to: GKALGNQKVVASVHNRQASWKRS*QGPCSS
Trigger: GCTAGAGCAGGGACCCTGCAAAGACCTCTTCCAGGA...TGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTTGCCTAATGCTTTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CAA 90 bp GTCCACAACAGGCAGGCACAAGTCTCACTTGGAGGTTGGTGGTGGCCAGTGCAGTCCCACAGCAATCCTTaGGCGACTGAAGAGTCTCTG +
Preference number: 5 (lower is better)
Translates to: VHNRQAQVSLGGWWWPVQSHSNP*ATEESL
Trigger: CAGAGACTCTTCAGTCGCCAAAGGATTGCTGTGGGA...CTGCACTGGCCACCACCAACCTCCAAGTGAGACTTGTGCCTGCCTGTTGTGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
CDS-3UTR CAA 90 bp TGGCTGGCCAGCCGTGTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACGTTTTTGGTCACTGGTaGCCTTTCCAGCCACTTCCA +
Preference number: 5 (lower is better)
Translates to: WLASRVLRMYSHRHVAAHVFGHW*PFQPLP
Trigger: TGGAAGTGGCTGGAAAGGCAACCAGTGACCAAAAAC...GTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCACACGGCTGGCCAGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CAA 90 bp GCTGTGTTCCACAATCCACGGCTTGCGTGGAAAATGGGGAACACCACTGTGCAATTCTTGCTCTTGCCTTaGCGATTCCCGCCACCACCT +
Preference number: 5 (lower is better)
Translates to: AVFHNPRLAWKMGNTTVQFLLLP*RFPPPP
Trigger: AGGTGGTGGCGGGAATCGCAAAGGCAAGAGCAAGAA...TTGCACAGTGGTGTTCCCCATTTTCCACGCAAGCCGTGGATTGTGGAACACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CAA 90 bp GGGTTAAACTATGTCCCAGTCCTAGAGGATACAAAGACCCCAGCTCCAACCCTGTCCTGGAAGAGGTCTTaGCAGGGTCCCTGCTCTAGC +
Preference number: 5 (lower is better)
Translates to: GLNYVPVLEDTKTPAPTLSWKRS*QGPCSS
Trigger: GCTAGAGCAGGGACCCTGCAAAGACCTCTTCCAGGA...CAGGGTTGGAGCTGGGGTCTTTGTATCCTCTAGGACTGGGACATAGTTTAACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CAA 90 bp GGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTATGGCCTGGACTGGTCCTGGAAGAGGTCTTaGCAGGGTCCCTGCTCTAGC +
Preference number: 5 (lower is better)
Translates to: GILECWRANSNSSYGLDWSWKRS*QGPCSS
Trigger: GCTAGAGCAGGGACCCTGCAAAGACCTCTTCCAGGA...CCAGTCCAGGCCATAGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CAA 90 bp AACCAGAAGGTGGTGGCCTCAGTCCACAACAGGCAGGCACAAGTCTCACTTGGATCCCACAGCAATCCTTaGGCGACTGAAGAGTCTCTG +
Preference number: 5 (lower is better)
Translates to: NQKVVASVHNRQAQVSLGSHSNP*ATEESL
Trigger: CAGAGACTCTTCAGTCGCCAAAGGATTGCTGTGGGA...TCCAAGTGAGACTTGTGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
CDS-3UTR CAA 90 bp CCGTGTGCTCAGAATGTATTCGCACAGACACGTGGCAGCTCACATTGGTCACATTTCTTGCTCTTGCCTTaGCGATTCCCGCCACCACCT +
Preference number: 5 (lower is better)
Translates to: PCAQNVFAQTRGSSHWSHFLLLP*RFPPPP
Trigger: AGGTGGTGGCGGGAATCGCAAAGGCAAGAGCAAGAA...ATGTGACCAATGTGAGCTGCCACGTGTCTGTGCGAATACATTCTGAGCACACGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001115.16
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CAA 90 bp ATTAGGCAACCAGAAGGTGGTGGCCTCAGTCCACAACAGGCAGGCACAAGTCTCGTTTTTGGTCACTGGTaGCCTTTCCAGCCACTTCCA +
Preference number: 5 (lower is better)
Translates to: IRQPEGGGLSPQQAGTSLVFGHW*PFQPLP
Trigger: TGGAAGTGGCTGGAAAGGCAACCAGTGACCAAAAAC...GAGACTTGTGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTTGCCTAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CAA 90 bp GGGTTGTGGGCTTCCCACGAGAGGCTTAGAGCAGCAGCTCGGCCAAATACGGGTTTCTTTTCCAGTTTCTaGCATGCGTACATCTTGCCT +
Preference number: 5 (lower is better)
Translates to: GLWASHERLRAAARPNTGFFSSF*HAYILP
Trigger: AGGCAAGATGTACGCATGCAAGAAACTGGAAAAGAA...ACCCGTATTTGGCCGAGCTGCTGCTCTAAGCCTCTCGTGGGAAGCCCACAACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099482.5
CDS-3UTR CAA 90 bp TCTCACTTGGAGGTTGGTGGTGGCCAGTGCAGTGCTGTGGGCAGAGGTCTGACCTTCTTTTCCAGTTTCTaGCATGCGTACATCTTGCCT +
Preference number: 5 (lower is better)
Translates to: SHLEVGGGQCSAVGRGLTFFSSF*HAYILP
Trigger: AGGCAAGATGTACGCATGCAAGAAACTGGAAAAGAA...GGTCAGACCTCTGCCCACAGCACTGCACTGGCCACCACCAACCTCCAAGTGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CAA 90 bp GCTGTGTTCCACAATCCACGGCTTGCGTGGAAAATGGGGAACACCACTGTGCAAGTTTTTGGTCACTGGTaGCCTTTCCAGCCACTTCCA +
Preference number: 5 (lower is better)
Translates to: AVFHNPRLAWKMGNTTVQVFGHW*PFQPLP
Trigger: TGGAAGTGGCTGGAAAGGCAACCAGTGACCAAAAAC...TTGCACAGTGGTGTTCCCCATTTTCCACGCAAGCCGTGGATTGTGGAACACAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CAA 90 bp GCTGTGTTCCACAATCCACGGCTTGCGTGGAAAATGGGGAACACCACTGTGCAATTCTTTTCCAGTTTCTaGCATGCGTACATCTTGCCT +
Preference number: 5 (lower is better)
Translates to: AVFHNPRLAWKMGNTTVQFFSSF*HAYILP
Trigger: AGGCAAGATGTACGCATGCAAGAAACTGGAAAAGAA...TTGCACAGTGGTGTTCCCCATTTTCCACGCAAGCCGTGGATTGTGGAACACAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000001115.16
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CAA 90 bp TACTTTTATGAGGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTATGTCCTGGAAGAGGTCTTaGCAGGGTCCCTGCTCTAGC +
Preference number: 5 (lower is better)
Translates to: YFYEGFWNVGGLILTPPMSWKRS*QGPCSS
Trigger: GCTAGAGCAGGGACCCTGCAAAGACCTCTTCCAGGA...CATAGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCCTCATAAAAGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CAA 90 bp GGGATTCTGGAATGTTGGAGGGCTAATTCTAACTCCTCCTATGGCCTGGACTGGTTCTTTTCCAGTTTCTaGCATGCGTACATCTTGCCT +
Preference number: 5 (lower is better)
Translates to: GILECWRANSNSSYGLDWFFSSF*HAYILP
Trigger: AGGCAAGATGTACGCATGCAAGAAACTGGAAAAGAA...CCAGTCCAGGCCATAGGAGGAGTTAGAATTAGCCCTCCAACATTCCAGAATCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CAA 90 bp ATTATTGCTGGGCATGTGTCTACTTTTATGAGGGATTCTGGAATGTTGGAGGGCGTTTTTGGTCACTGGTaGCCTTTCCAGCCACTTCCA +
Preference number: 5 (lower is better)
Translates to: IIAGHVSTFMRDSGMLEGVFGHW*PFQPLP
Trigger: TGGAAGTGGCTGGAAAGGCAACCAGTGACCAAAAAC...GCCCTCCAACATTCCAGAATCCCTCATAAAAGTAGACACATGCCCAGCAATAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS-3UTR CAA 90 bp CAGCTAAGTCTGGGGTTAAACTATGTCCCAGTCCTAGAGGATACAAAGACCCCATTCTTTTCCAGTTTCTaGCATGCGTACATCTTGCCT +
Preference number: 5 (lower is better)
Translates to: QLSLGLNYVPVLEDTKTPFFSSF*HAYILP
Trigger: AGGCAAGATGTACGCATGCAAGAAACTGGAAAAGAA...TGGGGTCTTTGTATCCTCTAGGACTGGGACATAGTTTAACCCCAGACTTAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000001115.16
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS GCA 72 bp CGTGGGTCAGCCGGGTCAGCTCCTGGAAGAGGTCTTTaGAGGGTCCCTGCTCTAGCCGCTGGGCACAGTTAC +
Preference number: 6 (lower is better)
Translates to: RGSAGSAPGRGL*RVPALAAGHSY
Trigger: GTAACTGTGCCCAGCGGCTAGAGCAGGGACCCTGCAAAGACCTCTTCCAGGAGCTGACCCGGCTGACCCACG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000001115.16
ENSMUST00000099482.5
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS CAA 90 bp CTCAGGTACTCGTGGGTCAGCCGGGTCAGCTCCTGGAAGAGGTCTTaGCAGGGTCCCTGCTCTAGCCGCTGGGCACAGTTACTCACCAGC +
Preference number: 6 (lower is better)
Translates to: LRYSWVSRVSSWKRS*QGPCSSRWAQLLTS
Trigger: GCTGGTGAGTAACTGTGCCCAGCGGCTAGAGCAGGGACCCTGCAAAGACCTCTTCCAGGAGCTGACCCGGCTGACCCACGAGTACCTGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000001115.16
ENSMUST00000099482.5
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS GCA 72 bp CCCAGCCGCTTGAAATTCAGTTTCTTGAAAAGGGGGTaGTCCTTTACCTCACGGGCGCCACCTCCACGACAC +
Preference number: 6 (lower is better)
Translates to: PSRLKFSFLKRG*SFTSRAPPPRH
Trigger: GTGTCGTGGAGGTGGCGCCCGTGAGGTAAAGGAGCACCCCCTTTTCAAGAAACTGAATTTCAAGCGGCTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000001115.16
ENSMUST00000099482.5
ENSMUST00000224118.2
ENSMUST00000224653.2
ENSMUST00000224995.2
ENSMUST00000225925.2
CDS GCA 72 bp GCCACAGCAGATCTCAGCAGCATAGAAGACAGCACGTaGTTCAGGAAAGCCAGCTACAAACCTACTGTTCAC +
Preference number: 6 (lower is better)
Translates to: ATADLSSIEDST*FRKASYKPTVH
Trigger: GTGAACAGTAGGTTTGTAGCTGGCTTTCCTGAAGCACGTGCTGTCTTCTATGCTGCTGAGATCTGCTGTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225925.2
CDS CAA 72 bp CCCTTTCGCTTCTTTATCCGCTTCTTTTCCAGTTTCTaGCATGCGTACATCTTGCCTGTTGCCCGCACCTCC +
Preference number: 6 (lower is better)
Translates to: PFRFFIRFFSSF*HAYILPVARTS
Trigger: GGAGGTGCGGGCAACAGGCAAGATGTACGCATGCAAGAAACTGGAAAAGAAGCGGATAAAGAAGCGAAAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224995.2