RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GRK1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031450

Ensembl transcript IDs: ENSMUST00000033827.8, ENSMUST00000209909.2

Found 398 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCTTTCCTTGGCAGGTACCCCATGGCTCTGGCAGCCCCAAGCTCTTaGGGTTTCCAAGGCAACCCAGGCTTCACCTTCACAGCTTCAAGC +
Preference number: 1 (lower is better)
Translates to: AFLGRYPMALAAPSS*GFQGNPGFTFTASS
Trigger: GCTTGAAGCTGTGAAGGTGAAGCCTGGGTTGCCTTGGAAACCCCAAGAGCTTGGGGCTGCCAGAGCCATGGGGTACCTGCCAAGGAAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 90 bp ACCCTTCTCCTCTCAGCATCACCTCTGATGAAGCCAGCAGTGACCTaGAGGTACAACCAGGCACAGGGCAGCTGGAGGTCCCAAAGTGAG +
Preference number: 1 (lower is better)
Translates to: TLLLSASPLMKPAVT*RYNQAQGSWRSQSE
Trigger: CTCACTTTGGGACCTCCAGCTGCCCTGTGCCTGGTTGTACCTGCAGGTCACTGCTGGCTTCATCAGAGGTGATGCTGAGAGGAGAAGGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 90 bp GACCTGCAGGTACAACCAGGCACAGGGCAGCTGGAGGTCCCAAAGTaGGTCTCTCTGAGTAACACTCGAGCTTACGTCTGTGAATGGGCC +
Preference number: 1 (lower is better)
Translates to: DLQVQPGTGQLEVPK*VSLSNTRAYVCEWA
Trigger: GGCCCATTCACAGACGTAAGCTCGAGTGTTACTCAGAGAGACTCACTTTGGGACCTCCAGCTGCCCTGTGCCTGGTTGTACCTGCAGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 90 bp AGCCAAACCGTGCGGCAGAAGCTGCCGAGTTCTTCTGCTGCTGATTaGTGGGGCTGGAACATGGCTCCTCATTCGATTACATCTGCACCG +
Preference number: 1 (lower is better)
Translates to: SQTVRQKLPSSSAAD*WGWNMAPHSITSAP
Trigger: CGGTGCAGATGTAATCGAATGAGGAGCCATGTTCCAGCCCCAGCAATCAGCAGCAGAAGAACTCGGCAGCTTCTGCCGCACGGTTTGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 90 bp GTGCGGCAGAAGCTGCCGAGTTCTTCTGCTGCTGATTGCTGGGGCTaGAACATGGCTCCTCATTCGATTACATCTGCACCGGCTTTCTGT +
Preference number: 1 (lower is better)
Translates to: VRQKLPSSSAADCWG*NMAPHSITSAPAFC
Trigger: ACAGAAAGCCGGTGCAGATGTAATCGAATGAGGAGCCATGTTCCAGCCCCAGCAATCAGCAGCAGAAGAACTCGGCAGCTTCTGCCGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 90 bp CTCCAACTCCTTCCAGCTTTGTTGACTACACACACTTCTCCCTTGTaGGCTGGCTCCACTCCATGTGAGAGCTTTCCTTGGCAGGTACCC +
Preference number: 1 (lower is better)
Translates to: LQLLPALLTTHTSPL*AGSTPCESFPWQVP
Trigger: GGGTACCTGCCAAGGAAAGCTCTCACATGGAGTGGAGCCAGCCCACAAGGGAGAAGTGTGTGTAGTCAACAAAGCTGGAAGGAGTTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 90 bp CACCTCCCCAAGGCCCTTCCAGAGCGCGCCAAATTGCACAGTGTTTaGTTCTCTGGGAAGAGCAGGAATCTAGTGTGGACTTCTTTAGCA +
Preference number: 1 (lower is better)
Translates to: HLPKALPERAKLHSV*FSGKSRNLVWTSLA
Trigger: TGCTAAAGAAGTCCACACTAGATTCCTGCTCTTCCCAGAGAATCAAACACTGTGCAATTTGGCGCGCTCTGGAAGGGCCTTGGGGAGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 90 bp TCTGGATCCACAGGCAGCAGGAAGAGAGAGCCATTGGGTCTGTCCTaGGTATTTGAAACCCCAAGACCATGCCCAGTAATACACTCCCTC +
Preference number: 1 (lower is better)
Translates to: SGSTGSRKREPLGLS*VFETPRPCPVIHSL
Trigger: GAGGGAGTGTATTACTGGGCATGGTCTTGGGGTTTCAAATACTCAGGACAGACCCAATGGCTCTCTCTTCCTGCTGCCTGTGGATCCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 90 bp ATGGTGACCTGGTTGGAGTGGGATACCAGGGTCACTCTCTTCCCCTaGGCTCTGTACACTTTCCTCTCTTTATACAACCAGCTCCATGCT +
Preference number: 1 (lower is better)
Translates to: MVTWLEWDTRVTLFP*ALYTFLSLYNQLHA
Trigger: AGCATGGAGCTGGTTGTATAAAGAGAGGAAAGTGTACAGAGCCCAGGGGAAGAGAGTGACCCTGGTATCCCACTCCAACCAGGTCACCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 90 bp GTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTaGCTTCCAGTCCTAGGGATAACTCCCCATGTTCAGGAGGTCCTC +
Preference number: 1 (lower is better)
Translates to: VTRIQVNLHLTELPS*LPVLGITPHVQEVL
Trigger: GAGGACCTCCTGAACATGGGGAGTTATCCCTAGGACTGGAAGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 90 bp TCCTTTCCATTCTCTAAAGACTTAACATCCCCACATTGGGGTCCCTaGGAGCAGGCAGTGACCAGTAAAGGCAGCTTAGGAGGCAGGAAC +
Preference number: 1 (lower is better)
Translates to: SFPFSKDLTSPHWGP*EQAVTSKGSLGGRN
Trigger: GTTCCTGCCTCCTAAGCTGCCTTTACTGGTCACTGCCTGCTCTCAGGGACCCCAATGTGGGGATGTTAAGTCTTTAGAGAATGGAAAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 90 bp CCAAGCAGGGATGAGGGCTGGTGTATAACAAGGACCAGGCCTTCCTaGAACCAGCTATGGCTGCTGGAATTCACCTTTTCACACACATAC +
Preference number: 1 (lower is better)
Translates to: PSRDEGWCITRTRPS*NQLWLLEFTFSHTY
Trigger: GTATGTGTGTGAAAAGGTGAATTCCAGCAGCCATAGCTGGTTTCAGGAAGGCCTGGTCCTTGTTATACACCAGCCCTCATCCCTGCTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 90 bp CGAGCTTACGTCTGTGAATGGGCCAGAGTGAGAAAAGACCTCTCCTaGTTAGACCCTAAGAGACACAGAAGCAAAGCAGCATTGCCCCCA +
Preference number: 1 (lower is better)
Translates to: RAYVCEWARVRKDLS*LDPKRHRSKAALPP
Trigger: TGGGGGCAATGCTGCTTTGCTTCTGTGTCTCTTAGGGTCTAATCAGGAGAGGTCTTTTCTCACTCTGGCCCATTCACAGACGTAAGCTCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 90 bp TATAACCAAGGTGGCCAACAAGTGCCAGAATCAAAGTGGGCACATTaGAGTTCCGTGGGGTCAGTGTCCAGGCAAGACTTGAGCTCTAGG +
Preference number: 1 (lower is better)
Translates to: YNQGGQQVPESKWAH*SSVGSVSRQDLSSR
Trigger: CCTAGAGCTCAAGTCTTGCCTGGACACTGACCCCACGGAACTTCAATGTGCCCACTTTGATTCTGGCACTTGTTGGCCACCTTGGTTATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 90 bp GTATCCTTGTATCTTTCTTGTATCCTTGACCCTAAAGCCAAACCGTaGGGCAGAAGCTGCCGAGTTCTTCTGCTGCTGATTGCTGGGGCT +
Preference number: 1 (lower is better)
Translates to: VSLYLSCILDPKAKP*GRSCRVLLLLIAGA
Trigger: AGCCCCAGCAATCAGCAGCAGAAGAACTCGGCAGCTTCTGCCGCACGGTTTGGCTTTAGGGTCAAGGATACAAGAAAGATACAAGGATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 90 bp ATTCTGCCTACAAGCAGCACAGTCCAGCCTATCATAGCGACACCCTaGTCCCTGGCACCAACTTCCTTCTCTCTTAGTGAGTGTTCTATT +
Preference number: 1 (lower is better)
Translates to: ILPTSSTVQPIIATP*SLAPTSFSLSECSI
Trigger: AATAGAACACTCACTAAGAGAGAAGGAAGTTGGTGCCAGGGAGCAGGGTGTCGCTATGATAGGCTGGACTGTGCTGCTTGTAGGCAGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 90 bp CAGTCTCTAGGCCACTTACTAATATTCTTCTCCTCTGGAAGCTCTTaGCCTGGGAATCAGAATCTAGATTGCCCTCAGCACCCTGTCTTC +
Preference number: 1 (lower is better)
Translates to: QSLGHLLIFFSSGSS*PGNQNLDCPQHPVF
Trigger: GAAGACAGGGTGCTGAGGGCAATCTAGATTCTGATTCCCAGGTCAAGAGCTTCCAGAGGAGAAGAATATTAGTAAGTGGCCTAGAGACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 90 bp CTCTGTTCCTGGGCTCTGTTCCCACCACTACCCACACTACCTCACTaGAGGTACAACTTGCAAAACATAGACTTTCAGGAAAGCACTAAA +
Preference number: 1 (lower is better)
Translates to: LCSWALFPPLPTLPH*RYNLQNIDFQESTK
Trigger: TTTAGTGCTTTCCTGAAAGTCTATGTTTTGCAAGTTGTACCTCCAGTGAGGTAGTGTGGGTAGTGGTGGGAACAGAGCCCAGGAACAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 90 bp ACCTTCAACTCCCAGAGTCATCTCTGTCTATCTGAGGTGCCTCTCTaGCGGGTCCCTCTTGAAGATGAAGAATTATTAGAGTCATTGCAG +
Preference number: 1 (lower is better)
Translates to: TFNSQSHLCLSEVPL*RVPLEDEELLESLQ
Trigger: CTGCAATGACTCTAATAATTCTTCATCTTCAAGAGGGACCCGTCAGAGAGGCACCTCAGATAGACAGAGATGACTCTGGGAGTTGAAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 90 bp TACACAAGTGCCTGCAACCCTGAGCTGACCAGGAGCAAACAGGTCTaGCCTGAAATATTAAGTCCAAGTACCAGGAGATTGACATTGAAT +
Preference number: 1 (lower is better)
Translates to: YTSACNPELTRSKQV*PEILSPSTRRLTLN
Trigger: ATTCAATGTCAATCTCCTGGTACTTGGACTTAATATTTCAGGGCAGACCTGTTTGCTCCTGGTCAGCTCAGGGTTGCAGGCACTTGTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 90 bp TGTTGTGTTCCAGTATTGGCTTCATCCAGCAATCTTTCAAAAATTTaGGGTATGTGTAGGGCGCCTTCCTTCCCAAAAAGCTCTGGAGGC +
Preference number: 1 (lower is better)
Translates to: CCVPVLASSSNLSKI*GMCRAPSFPKSSGG
Trigger: GCCTCCAGAGCTTTTTGGGAAGGAAGGCGCCCTACACATACCCCAAATTTTTGAAAGATTGCTGGATGAAGCCAATACTGGAACACAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 90 bp TCTAGGCCACTTACTAATATTCTTCTCCTCTGGAAGCTCTTGACCTaGGAATCAGAATCTAGATTGCCCTCAGCACCCTGTCTTCCATGT +
Preference number: 1 (lower is better)
Translates to: SRPLTNILLLWKLLT*ESESRLPSAPCLPC
Trigger: ACATGGAAGACAGGGTGCTGAGGGCAATCTAGATTCTGATTCCCAGGTCAAGAGCTTCCAGAGGAGAAGAATATTAGTAAGTGGCCTAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 90 bp CAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATaGACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATAT +
Preference number: 1 (lower is better)
Translates to: QGAKGICNPIGGTTL*TNQYPGALDSSCIY
Trigger: ATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 90 bp CAGGAAAGCACTAAACCTTCCTCAAACCATAGCCAGGGACTTGAATaGTTAGTCTCCAAGACCACTTGTGACATGACTTTGAATTTGGGA +
Preference number: 1 (lower is better)
Translates to: QESTKPSSNHSQGLE*LVSKTTCDMTLNLG
Trigger: TCCCAAATTCAAAGTCATGTCACAAGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTTAGTGCTTTCCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 90 bp CGATTACATCTGCACCGGCTTTCTGTTGTTGACCATTTCCTTCGGTaGCTCGGAGTTTCTTTAATTCCTTTTTACAAGTTGGAAGCTGAG +
Preference number: 1 (lower is better)
Translates to: RLHLHRLSVVDHFLR*LGVSLIPFYKLEAE
Trigger: CTCAGCTTCCAACTTGTAAAAAGGAATTAAAGAAACTCCGAGGCACCGAAGGAAATGGTCAACAACAGAAAGCCGGTGCAGATGTAATCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 90 bp CAGTCCACCTTCAAAAGTCCCTACAGTCTATTACAGTCTCAACACTaGCTAAAAGTCCAAAGGTCAAAGTCTCTTCTGAGACTCATGGCA +
Preference number: 1 (lower is better)
Translates to: QSTFKSPYSLLQSQH*LKVQRSKSLLRLMA
Trigger: TGCCATGAGTCTCAGAAGAGACTTTGACCTTTGGACTTTTAGGCAGTGTTGAGACTGTAATAGACTGTAGGGACTTTTGAAGGTGGACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 90 bp ACTCTAGCTGCATATATATCAAAAGATGGCCTAGTCGGCCATCACTaGAAAGAGAGGCTCATTGGACTTGCAAACTTTATATGCCCCAGT +
Preference number: 1 (lower is better)
Translates to: TLAAYISKDGLVGHH*KERLIGLANFICPS
Trigger: ACTGGGGCATATAAAGTTTGCAAGTCCAATGAGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 90 bp ATTACAAGAGCAGTCTCTAGGCCACTTACTAATATTCTTCTCCTCTaGAAGCTCTTGACCTGGGAATCAGAATCTAGATTGCCCTCAGCA +
Preference number: 1 (lower is better)
Translates to: ITRAVSRPLTNILLL*KLLTWESESRLPSA
Trigger: TGCTGAGGGCAATCTAGATTCTGATTCCCAGGTCAAGAGCTTCCAGAGGAGAAGAATATTAGTAAGTGGCCTAGAGACTGCTCTTGTAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 90 bp CCCTGGCACCAACTTCCTTCTCTCTTAGTGAGTGTTCTATTGCTGTaGGGAGACACTAAGACTATGACAACGCTTAGAAAGGAAAACATT +
Preference number: 1 (lower is better)
Translates to: PWHQLPSLLVSVLLL*GDTKTMTTLRKENI
Trigger: AATGTTTTCCTTTCTAAGCGTTGTCATAGTCTTAGTGTCTCCTCACAGCAATAGAACACTCACTAAGAGAGAAGGAAGTTGGTGCCAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 90 bp AACATGGCTCCTCATTCGATTACATCTGCACCGGCTTTCTGTTGTTaGCCATTTCCTTCGGTGCCTCGGAGTTTCTTTAATTCCTTTTTA +
Preference number: 1 (lower is better)
Translates to: NMAPHSITSAPAFCC*PFPSVPRSFFNSFL
Trigger: TAAAAAGGAATTAAAGAAACTCCGAGGCACCGAAGGAAATGGTCAACAACAGAAAGCCGGTGCAGATGTAATCGAATGAGGAGCCATGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGACCACATTGGGGTCCCTaGGAGCAGGCAGTGACCAGT +
Preference number: 2 (lower is better)
Translates to: APFVWPLVTALASQAQLRPHWGP*EQAVTS
Trigger: ACTGGTCACTGCCTGCTCTCAGGGACCCCAATGTGG...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTAGGACCAGGCCTTCCTaGAACCAGCTATGGCTGCTG +
Preference number: 2 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLRTRPS*NQLWLL
Trigger: CAGCAGCCATAGCTGGTTTCAGGAAGGCCTGGTCCT...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGACACACACATACCCCGTaGCCCAGTGAAGCCCAGGAT +
Preference number: 2 (lower is better)
Translates to: APFVWPLVTALASQAQLRHTHTP*PSEAQD
Trigger: ATCCTGGGCTTCACTGGGGCACGGGGTATGTGTGTG...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGGGTACCCCATGGCTCTaGCAGCCCCAAGCTCTTGGG +
Preference number: 2 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLGTPWL*QPQALG
Trigger: CCCAAGAGCTTGGGGCTGCCAGAGCCATGGGGTACC...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTTGGCTCCACTCCATGTaGGAGCTTTCCTTGGCAGGT +
Preference number: 2 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLWLHSM*ELSLAG
Trigger: ACCTGCCAAGGAAAGCTCTCACATGGAGTGGAGCCA...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTGTGACCTGGTTGGAGTaGGATACCAGGGTCACTCTC +
Preference number: 2 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLVTWLE*DTRVTL
Trigger: GAGAGTGACCCTGGTATCCCACTCCAACCAGGTCAC...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTCAGCTGTGTAAGAGGTaGACAGACAGGGAGGCAAGG +
Preference number: 2 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLQLCKR*TDREAR
Trigger: CCTTGCCTCCCTGTCTGTCCACCTCTTACACAGCTG...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGACAGCTGTGTAAGAGGTaGACAGACAGGGAGGCAAGG +
Preference number: 2 (lower is better)
Translates to: APFVWPLVTALASQAQLRQLCKR*TDREAR
Trigger: CCTTGCCTCCCTGTCTGTCCACCTCTTACACAGCTG...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTGCTGATTGCTGGGGCTaGAACATGGCTCCTCATTCG +
Preference number: 2 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLADCWG*NMAPHS
Trigger: CGAATGAGGAGCCATGTTCCAGCCCCAGCAATCAGC...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 90 bp TGGCTGACGTCAACGCGTTCTTCAGATCTCCAACTCCTTCCAGCTTaGTTGACTACACACACTTCTCCCTTGTGGGCTGGCTCCACTCCA +
Preference number: 2 (lower is better)
Translates to: WLTSTRSSDLQLLPA*LTTHTSPLWAGSTP
Trigger: TGGAGTGGAGCCAGCCCACAAGGGAGAAGTGTGTGTAGTCAACAAAGCTGGAAGGAGTTGGAGATCTGAAGAACGCGTTGACGTCAGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGGGGTACACAAGTGCCTaGAACCCTGAGCTGACCAGG +
Preference number: 2 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLGYTSA*NPELTR
Trigger: CCTGGTCAGCTCAGGGTTGCAGGCACTTGTGTACCC...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGAAGTTGCATGGTGACCTaGTTGGAGTGGGATACCAGG +
Preference number: 2 (lower is better)
Translates to: APFVWPLVTALASQAQLRSCMVT*LEWDTR
Trigger: CCTGGTATCCCACTCCAACCAGGTCACCATGCAACT...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGAGGCAATAGCCACATATaGCCATGGCTTTGCTCAGGC +
Preference number: 2 (lower is better)
Translates to: APFVWPLVTALASQAQLRGNSHI*PWLCSG
Trigger: GCCTGAGCAAAGCCATGGCCATATGTGGCTATTGCC...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp ACTGGTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTGGCTCAGGCACAGGGCAGCTaGAGGTCCCAAAGTGAGTCT +
Preference number: 2 (lower is better)
Translates to: TGDQDTSQPTSHRAPKLAQAQGS*RSQSES
Trigger: AGACTCACTTTGGGACCTCCAGCTGCCCTGTGCCTG...AGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCACCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 90 bp TCACCTCCCCAAGGCCCTTCCAGAGCGCGCCAAATTGCACAGTGTTaGATTCTCTGGGAAGAGCAGGAATCTAGTGTGGACTTCTTTAGC +
Preference number: 2 (lower is better)
Translates to: SPPQGPSRARQIAQC*ILWEEQESSVDFFS
Trigger: GCTAAAGAAGTCCACACTAGATTCCTGCTCTTCCCAGAGAATCAAACACTGTGCAATTTGGCGCGCTCTGGAAGGGCCTTGGGGAGGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 90 bp GGTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTaGGCTTCCAGTCCTAGGGATAACTCCCCATGTTCAGGAGGTCCT +
Preference number: 2 (lower is better)
Translates to: GDQDTSQPTSHRAPK*ASSPRDNSPCSGGP
Trigger: AGGACCTCCTGAACATGGGGAGTTATCCCTAGGACTGGAAGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 90 bp GATCTCCAACTCCTTCCAGCTTTGTTGACTACACACACTTCTCCCTaGTGGGCTGGCTCCACTCCATGTGAGAGCTTTCCTTGGCAGGTA +
Preference number: 2 (lower is better)
Translates to: DLQLLPALLTTHTSP*WAGSTPCESFPWQV
Trigger: TACCTGCCAAGGAAAGCTCTCACATGGAGTGGAGCCAGCCCACAAGGGAGAAGTGTGTGTAGTCAACAAAGCTGGAAGGAGTTGGAGATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGCATCACAGGCTCAGCTaGGAGCTCACACAGCTGTGT +
Preference number: 2 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLHHRLS*ELTQLC
Trigger: ACACAGCTGTGTGAGCTCTCAGCTGAGCCTGTGATG...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp ACTGGTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTGGCTGTGACCTGGTTGGAGTaGGATACCAGGGTCACTCTC +
Preference number: 2 (lower is better)
Translates to: TGDQDTSQPTSHRAPKLAVTWLE*DTRVTL
Trigger: GAGAGTGACCCTGGTATCCCACTCCAACCAGGTCAC...AGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCACCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACCAGGCACAGGGCAGCTaGAGGTCCCAAAGTGAGTCT +
Preference number: 2 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNQAQGS*RSQSES
Trigger: AGACTCACTTTGGGACCTCCAGCTGCCCTGTGCCTG...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTCTCCATCACACTTTCTaGGGCCCCTTTCTCCTCAAA +
Preference number: 2 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLLHHTF*GPFLLK
Trigger: TTTGAGGAGAAAGGGGCCCCAGAAAGTGTGATGGAG...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGTCTGCTGCTGATTGCTaGGGCTGGAACATGGCTCCT +
Preference number: 2 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLSAADC*GWNMAP
Trigger: AGGAGCCATGTTCCAGCCCCAGCAATCAGCAGCAGA...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGCACACTTCTCCCTTGTaGGCTGGCTCCACTCCATGT +
Preference number: 2 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLHTSPL*AGSTPC
Trigger: ACATGGAGTGGAGCCAGCCCACAAGGGAGAAGTGTG...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTAGGACCAGGCCTTCCTaGAACCAGCTATGGCTGCTG +
Preference number: 2 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTRTRPS*NQLWLL
Trigger: CAGCAGCCATAGCTGGTTTCAGGAAGGCCTGGTCCT...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGCCGGCTTTCTGTTGTTaGCCATTTCCTTCGGTGCCT +
Preference number: 2 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLPAFCC*PFPSVP
Trigger: AGGCACCGAAGGAAATGGTCAACAACAGAAAGCCGG...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGGAGTTCTTCTGCTGCTaGTTGCTGGGGCTGGAACAT +
Preference number: 2 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLEFFCC*LLGLEH
Trigger: ATGTTCCAGCCCCAGCAATCAGCAGCAGAAGAACTC...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTCAGAGCGCGCCAAATTaGACAGTGTTTGATTCTCTG +
Preference number: 2 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLQSAPN*TVFDSL
Trigger: CAGAGAATCAAACACTGTGCAATTTGGCGCGCTCTG...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTGAAGCAAAGCAGCATTaGCCCCAACAATTTCATCCC +
Preference number: 2 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLEAKQH*PQQFHP
Trigger: GGGATGAAATTGTTGGGGGCAATGCTGCTTTGCTTC...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGAGCCACATATGGCCATaGCTTTGCTCAGGCATCCAC +
Preference number: 2 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLSHIWP*LCSGIH
Trigger: GTGGATGCCTGAGCAAAGCCATGGCCATATGTGGCT...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGAAAAGCTCTGGAGGCTaGGGGGTACAAAGATGGCCT +
Preference number: 2 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLKSSGG*GVQRWP
Trigger: AGGCCATCTTTGTACCCCCCAGCCTCCAGAGCTTTT...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGAGCTTACGTCTGTGAATaGGCCAGAGTGAGAAAAGAC +
Preference number: 2 (lower is better)
Translates to: APFVWPLVTALASQAQLRAYVCE*ARVRKD
Trigger: GTCTTTTCTCACTCTGGCCCATTCACAGACGTAAGC...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTGCTTACGTCTGTGAATaGGCCAGAGTGAGAAAAGAC +
Preference number: 2 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLAYVCE*ARVRKD
Trigger: GTCTTTTCTCACTCTGGCCCATTCACAGACGTAAGC...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGAGGTACAAAGATGGCCTaGGAACACAGACACTCATTA +
Preference number: 2 (lower is better)
Translates to: APFVWPLVTALASQAQLRGTKMA*EHRHSL
Trigger: TAATGAGTGTCTGTGTTCTCAGGCCATCTTTGTACC...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGAAAATTGCACAGTGTTTaGTTCTCTGGGAAGAGCAGG +
Preference number: 2 (lower is better)
Translates to: APFVWPLVTALASQAQLRKLHSV*FSGKSR
Trigger: CCTGCTCTTCCCAGAGAATCAAACACTGTGCAATTT...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGACTCCAAGACCACTTGTaGCATGACTTTGAATTTGGG +
Preference number: 2 (lower is better)
Translates to: APFVWPLVTALASQAQLRLQDHL*HDFEFG
Trigger: CCCAAATTCAAAGTCATGTCACAAGTGGTCTTGGAG...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp ACTGGTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTGGCTATATGGCCATGGCTTTaGTCAGGCATCCACCACACA +
Preference number: 2 (lower is better)
Translates to: TGDQDTSQPTSHRAPKLAIWPWL*SGIHHT
Trigger: TGTGTGGTGGATGCCTGAGCAAAGCCATGGCCATAT...AGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCACCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACTTGATACATGTGTGCTaGCTGGGGCTAGAGGACGGA +
Preference number: 2 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNLIHVC*LGLEDG
Trigger: TCCGTCCTCTAGCCCCAGGCAGCACACATGTATCAA...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGAAGAGCTCCAAGGCCTaGTGGAGAATTTCATCACCC +
Preference number: 2 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLKSSKA*WRISSP
Trigger: GGGTGATGAAATTCTCCAGCAGGCCTTGGAGCTCTT...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGAAGATTCCCAGACCATaGTCCAGGAGGTGTAGTCAC +
Preference number: 2 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLKIPRP*SRRCSH
Trigger: GTGACTACACCTCCTGGACCATGGTCTGGGAATCTT...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGCACGCCTTGCCTCAGTaGCTTCCCTTAATTTTGGAG +
Preference number: 2 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLHALPQ*LPLILE
Trigger: CTCCAAAATTAAGGGAAGCCACTGAGGCAAGGCGTG...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 90 bp ATTCTTCTCCTCTGGAAGCTCTTGACCTGGGAATCAGAATCTAGATaGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCA +
Preference number: 2 (lower is better)
Translates to: ILLLWKLLTWESESR*PSAPCLPCFYEYGP
Trigger: TGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCTAGATTCTGATTCCCAGGTCAAGAGCTTCCAGAGGAGAAGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGACCGAAAGTCTTGCTTaGTCCACATGGAGACACAGT +
Preference number: 2 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLTESLA*STWRHS
Trigger: ACTGTGTCTCCATGTGGAGCAAGCAAGACTTTCGGT...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGAGGGTACACAAGTGCCTaGAACCCTGAGCTGACCAGG +
Preference number: 2 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGGYTSA*NPELTR
Trigger: CCTGGTCAGCTCAGGGTTGCAGGCACTTGTGTACCC...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACAGAGGTAGCTGTCTCTaGTTCTTGAGAGAGGCCCTT +
Preference number: 2 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNRGSCL*FLREAL
Trigger: AAGGGCCTCTCTCAAGAAGCAGAGACAGCTACCTCT...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp ACTGGTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTGGCTCAGAGCGCGCCAAATTaGACAGTGTTTGATTCTCTG +
Preference number: 2 (lower is better)
Translates to: TGDQDTSQPTSHRAPKLAQSAPN*TVFDSL
Trigger: CAGAGAATCAAACACTGTGCAATTTGGCGCGCTCTG...AGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCACCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGACACACACATACCCCGTaGCCCAGTGAAGCCCAGGAT +
Preference number: 2 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGHTHTP*PSEAQD
Trigger: ATCCTGGGCTTCACTGGGGCACGGGGTATGTGTGTG...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGGAAGCAAAGCAGCATTaGCCCCAACAATTTCATCCC +
Preference number: 2 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLEAKQH*PQQFHP
Trigger: GGGATGAAATTGTTGGGGGCAATGCTGCTTTGCTTC...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTGGCAATAGCCACATATaGCCATGGCTTTGCTCAGGC +
Preference number: 2 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTGNSHI*PWLCSG
Trigger: GCCTGAGCAAAGCCATGGCCATATGTGGCTATTGCC...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGACAGTGTTTGATTCTCTaGGAAGAGCAGGAATCTAGT +
Preference number: 2 (lower is better)
Translates to: APFVWPLVTALASQAQLRQCLIL*EEQESS
Trigger: ACTAGATTCCTGCTCTTCCCAGAGAATCAAACACTG...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACAAGATTCCCAGACCATaGTCCAGGAGGTGTAGTCAC +
Preference number: 2 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNKIPRP*SRRCSH
Trigger: GTGACTACACCTCCTGGACCATGGTCTGGGAATCTT...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACAGCTCCAAGGCCTGCTaGAGAATTTCATCACCCTTG +
Preference number: 2 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNSSKAC*RISSPL
Trigger: CAAGGGTGATGAAATTCTCCAGCAGGCCTTGGAGCT...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGAAAGTGCCTGCAACCCTaGGCTGACCAGGAGCAAACA +
Preference number: 2 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGKCLQP*ADQEQT
Trigger: TGTTTGCTCCTGGTCAGCTCAGGGTTGCAGGCACTT...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCCCACATTGGGGTCCCTaGGAGCAGGCAGTGACCAGT +
Preference number: 2 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLPHWGP*EQAVTS
Trigger: ACTGGTCACTGCCTGCTCTCAGGGACCCCAATGTGG...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTCAGAGCACATTAATTTaGGCTCCAGAACACATTGAA +
Preference number: 2 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLQSTLI*APEHIE
Trigger: TTCAATGTGTTCTGGAGCTCAAATTAATGTGCTCTG...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACCCAAACTTCACATTCTaGCTACAAGCAGCACAGTCC +
Preference number: 2 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNPNFTF*LQAAQS
Trigger: GGACTGTGCTGCTTGTAGGCAGAATGTGAAGTTTGG...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGAGTTGTGTTCCAGTATTaGCTTCATCCAGCAATCTTT +
Preference number: 2 (lower is better)
Translates to: APFVWPLVTALASQAQLRVVFQY*LHPAIF
Trigger: AAAGATTGCTGGATGAAGCCAATACTGGAACACAAC...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp ACTGGTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTGGCTACCAGCTATGGCTGCTaGAATTCACCTTTTCACACA +
Preference number: 2 (lower is better)
Translates to: TGDQDTSQPTSHRAPKLATSYGC*NSPFHT
Trigger: TGTGTGAAAAGGTGAATTCCAGCAGCCATAGCTGGT...AGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCACCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGACCAAGGCTCTGTTCCTaGGCTCTGTTCCCACCACTA +
Preference number: 2 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGPRLCS*ALFPPL
Trigger: TAGTGGTGGGAACAGAGCCCAGGAACAGAGCCTTGG...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACTCAGAGTTCTACATCTaGATCCACAGGCAGCAGGAA +
Preference number: 2 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNSEFYI*IHRQQE
Trigger: TTCCTGCTGCCTGTGGATCCAGATGTAGAACTCTGA...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 90 bp CAGGGACTTGAATGCTTAGTCTCCAAGACCACTTGTGACATGACTTaGAATTTGGGAAGAGCTCCAAGGCCTGCTGGAGAATTTCATCAC +
Preference number: 2 (lower is better)
Translates to: QGLECLVSKTTCDMT*NLGRAPRPAGEFHH
Trigger: GTGATGAAATTCTCCAGCAGGCCTTGGAGCTCTTCCCAAATTCAAAGTCATGTCACAAGTGGTCTTGGAGACTAAGCATTCAAGTCCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 90 bp GCCTCAGTGGCTTCCCTTAATTTTGGAGGAGGATTTCATGTATCCTaGTATCTTTCTTGTATCCTTGACCCTAAAGCCAAACCGTGCGGC +
Preference number: 2 (lower is better)
Translates to: ASVASLNFGGGFHVS*YLSCILDPKAKPCG
Trigger: GCCGCACGGTTTGGCTTTAGGGTCAAGGATACAAGAAAGATACAAGGATACATGAAATCCTCCTCCAAAATTAAGGGAAGCCACTGAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 90 bp GGGACACCCTTGATGCACGCCTTGCCTCAGTGGCTTCCCTTAATTTaGGAGGAGGATTTCATGTATCCTTGTATCTTTCTTGTATCCTTG +
Preference number: 2 (lower is better)
Translates to: GTPLMHALPQWLPLI*EEDFMYPCIFLVSL
Trigger: CAAGGATACAAGAAAGATACAAGGATACATGAAATCCTCCTCCAAAATTAAGGGAAGCCACTGAGGCAAGGCGTGCATCAAGGGTGTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGATACATAGAAGTTCTTTaGGCATTTACACCTTCACCT +
Preference number: 2 (lower is better)
Translates to: APFVWPLVTALASQAQLRYIEVL*AFTPSP
Trigger: AGGTGAAGGTGTAAATGCTCAAAGAACTTCTATGTA...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp ACTGGTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTGGCTTTGATGACATATTCTTaGCAGTTGCTTGTGCCCCAT +
Preference number: 2 (lower is better)
Translates to: TGDQDTSQPTSHRAPKLALMTYS*QLLVPH
Trigger: ATGGGGCACAAGCAACTGTCAAGAATATGTCATCAA...AGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCACCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTGTCCCCAAATACTGCTaGGACCTTACACTGTCAAAG +
Preference number: 2 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTVPKYC*DLTLSK
Trigger: CTTTGACAGTGTAAGGTCTCAGCAGTATTTGGGGAC...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGACTACAGATCATCTGGTaGAATCTGAATTTCCAACAA +
Preference number: 2 (lower is better)
Translates to: APFVWPLVTALASQAQLRLQIIW*NLNFQQ
Trigger: TTGTTGGAAATTCAGATTTCACCAGATGATCTGTAG...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACCAGCAGGGTAATTTGTaGAAAGGCTTATTTACCCCC +
Preference number: 2 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNQQGNL*KGLFTP
Trigger: GGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTG...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTAGCAGCCACATTCTTTaGCAAAATATTACAAGAGCA +
Preference number: 2 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLSSHIL*QNITRA
Trigger: TGCTCTTGTAATATTTTGGCAAAGAATGTGGCTGCT...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGAAGTTGCATGGTGACCTaGTTGGAGTGGGATACCAGG +
Preference number: 2 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGSCMVT*LEWDTR
Trigger: CCTGGTATCCCACTCCAACCAGGTCACCATGCAACT...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGAGAAAGAGAGGCTCATTaGACTTGCAAACTTTATATG +
Preference number: 2 (lower is better)
Translates to: APFVWPLVTALASQAQLREREAH*TCKLYM
Trigger: CATATAAAGTTTGCAAGTCCAATGAGCCTCTCTTTC...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGAAGCCACATATGGCCATaGCTTTGCTCAGGCATCCAC +
Preference number: 2 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGSHIWP*LCSGIH
Trigger: GTGGATGCCTGAGCAAAGCCATGGCCATATGTGGCT...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGAAAAAGCTCTGGAGGCTaGGGGGTACAAAGATGGCCT +
Preference number: 2 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGKSSGG*GVQRWP
Trigger: AGGCCATCTTTGTACCCCCCAGCCTCCAGAGCTTTT...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 90 bp ACCTTCCACAATACAGCTGGCCTGGGTTTTATTGATGACATATTCTaGACAGTTGCTTGTGCCCCATACAATTTAGGGACACTGGTCCAG +
Preference number: 2 (lower is better)
Translates to: TFHNTAGLGFIDDIF*TVACAPYNLGTLVQ
Trigger: CTGGACCAGTGTCCCTAAATTGTATGGGGCACAAGCAACTGTCAAGAATATGTCATCAATAAAACCCAGGCCAGCTGTATTGTGGAAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 90 bp ATTTTGGAGGAGGATTTCATGTATCCTTGTATCTTTCTTGTATCCTaGACCCTAAAGCCAAACCGTGCGGCAGAAGCTGCCGAGTTCTTC +
Preference number: 2 (lower is better)
Translates to: ILEEDFMYPCIFLVS*TLKPNRAAEAAEFF
Trigger: GAAGAACTCGGCAGCTTCTGCCGCACGGTTTGGCTTTAGGGTCAAGGATACAAGAAAGATACAAGGATACATGAAATCCTCCTCCAAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGACTGGAGGTCCCAAAGTaGGTCTCTCTGAGTAACACT +
Preference number: 2 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGLEVPK*VSLSNT
Trigger: AGTGTTACTCAGAGAGACTCACTTTGGGACCTCCAG...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCATCATAGCGACACCCTaGTCCCTGGCACCAACTTCC +
Preference number: 2 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLIIATP*SLAPTS
Trigger: GGAAGTTGGTGCCAGGGAGCAGGGTGTCGCTATGAT...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGACTTGCTTGCTCCACATaGAGACACAGTTGCATGGTG +
Preference number: 2 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGLACST*RHSCMV
Trigger: CACCATGCAACTGTGTCTCCATGTGGAGCAAGCAAG...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGGTTGTGTTCCAGTATTaGCTTCATCCAGCAATCTTT +
Preference number: 2 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLVVFQY*LHPAIF
Trigger: AAAGATTGCTGGATGAAGCCAATACTGGAACACAAC...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 90 bp TCACCAAGCTCCTGGCCTGGCCGCACATCTATACATAGAAGTTCTTaGAGCATTTACACCTTCACCTTATTATTCCATCTGTGGCCTTTT +
Preference number: 2 (lower is better)
Translates to: SPSSWPGRTSIHRSS*SIYTFTLLFHLWPF
Trigger: AAAAGGCCACAGATGGAATAATAAGGTGAAGGTGTAAATGCTCAAAGAACTTCTATGTATAGATGTGCGGCCAGGCCAGGAGCTTGGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGATTTACAGCTCACTGGTaGCCAGGATACAAGTCAACC +
Preference number: 2 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGFTAHW*PGYKST
Trigger: GGTTGACTTGTATCCTGGTCACCAGTGAGCTGTAAA...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGACTGCCTTTCATTAGATaGCCTTCAACTCCCAGAGTC +
Preference number: 2 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGLPFIR*PSTPRV
Trigger: GACTCTGGGAGTTGAAGGTCATCTAATGAAAGGCAG...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCTTGATACATGTGTGCTaGCTGGGGCTAGAGGACGGA +
Preference number: 2 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLLIHVC*LGLEDG
Trigger: TCCGTCCTCTAGCCCCAGGCAGCACACATGTATCAA...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGATATTTGATACATGTGTaGTGCCTGGGGCTAGAGGAC +
Preference number: 2 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGYLIHV*CLGLED
Trigger: GTCCTCTAGCCCCAGGCAGCACACATGTATCAAATA...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGACAGTCACTTTCCATTaGTATAACAAAATGCCTCAG +
Preference number: 2 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLTVTFH*YNKMPQ
Trigger: CTGAGGCATTTTGTTATAGCAATGGAAAGTGACTGT...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGGATATGGGGGACTTTTaGTATAGCATTGGAAATGTA +
Preference number: 2 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLDMGDF*YSIGNV
Trigger: TACATTTCCAATGCTATACCAAAAGTCCCCCATATC...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTCTCTATAGCAACATCTaGAACCTTCCACAATACAGC +
Preference number: 2 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTLYSNI*NLPQYS
Trigger: GCTGTATTGTGGAAGGTTCCAGATGTTGCTATAGAG...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 90 bp GACAGTTGCTTGTGCCCCATACAATTTAGGGACACTGGTCCAGTGTaGTGTTCCAGTATTGGCTTCATCCAGCAATCTTTCAAAAATTTG +
Preference number: 2 (lower is better)
Translates to: DSCLCPIQFRDTGPV*CSSIGFIQQSFKNL
Trigger: CAAATTTTTGAAAGATTGCTGGATGAAGCCAATACTGGAACACAACACTGGACCAGTGTCCCTAAATTGTATGGGGCACAAGCAACTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACCTACAGATCATCTGGTaGAATCTGAATTTCCAACAA +
Preference number: 2 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNLQIIW*NLNFQQ
Trigger: TTGTTGGAAATTCAGATTTCACCAGATGATCTGTAG...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCCTGGAGGTCCCAAAGTaGGTCTCTCTGAGTAACACT +
Preference number: 2 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLLEVPK*VSLSNT
Trigger: AGTGTTACTCAGAGAGACTCACTTTGGGACCTCCAG...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGAGAGGCTCATTGGACTTaGAAACTTTATATGCCCCAG +
Preference number: 2 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGEAHWT*KLYMPQ
Trigger: CTGGGGCATATAAAGTTTGCAAGTCCAATGAGCCTC...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCATATGGCCATGGCTTTaGTCAGGCATCCACCACACA +
Preference number: 2 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLIWPWL*SGIHHT
Trigger: TGTGTGGTGGATGCCTGAGCAAAGCCATGGCCATAT...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCAAGAGCTCCAAGGCCTaGTGGAGAATTTCATCACCC +
Preference number: 2 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLKSSKA*WRISSP
Trigger: GGGTGATGAAATTCTCCAGCAGGCCTTGGAGCTCTT...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACGATATGGGGGACTTTTaGTATAGCATTGGAAATGTA +
Preference number: 2 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNDMGDF*YSIGNV
Trigger: TACATTTCCAATGCTATACCAAAAGTCCCCCATATC...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACACAATACAGCTGGCCTaGGTTTTATTGATGACATAT +
Preference number: 2 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNTIQLA*VLLMTY
Trigger: ATATGTCATCAATAAAACCCAGGCCAGCTGTATTGT...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGAACCAGCTATGGCTGCTaGAATTCACCTTTTCACACA +
Preference number: 2 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGTSYGC*NSPFHT
Trigger: TGTGTGAAAAGGTGAATTCCAGCAGCCATAGCTGGT...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGAAATATATGAGCCTATaGAGACCATTCCTATTGAAC +
Preference number: 2 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLKYMSL*RPFLLN
Trigger: GTTCAATAGGAATGGTCTCCATAGGCTCATATATTT...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 90 bp GAGAATTTCATCACCCTTGATTATAGGAATAAAGTCCAAATCCAGTaGACCAATGTACGGCAGAAGCTGACACACCCTACTGTTCATAGC +
Preference number: 2 (lower is better)
Translates to: ENFITLDYRNKVQIQ*TNVRQKLTHPTVHS
Trigger: GCTATGAACAGTAGGGTGTGTCAGCTTCTGCCGTACATTGGTCAACTGGATTTGGACTTTATTCCTATAATCAAGGGTGATGAAATTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCGTCCCCAAATACTGCTaGGACCTTACACTGTCAAAG +
Preference number: 2 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLVPKYC*DLTLSK
Trigger: CTTTGACAGTGTAAGGTCTCAGCAGTATTTGGGGAC...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCTTTACAGCTCACTGGTaGCCAGGATACAAGTCAACC +
Preference number: 2 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLFTAHW*PGYKST
Trigger: GGTTGACTTGTATCCTGGTCACCAGTGAGCTGTAAA...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCCTGCCTTTCATTAGATaGCCTTCAACTCCCAGAGTC +
Preference number: 2 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLLPFIR*PSTPRV
Trigger: GACTCTGGGAGTTGAAGGTCATCTAATGAAAGGCAG...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCACCGAAAGTCTTGCTTaGTCCACATGGAGACACAGT +
Preference number: 2 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLTESLA*STWRHS
Trigger: ACTGTGTCTCCATGTGGAGCAAGCAAGACTTTCGGT...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCTATTTGATACATGTGTaGTGCCTGGGGCTAGAGGAC +
Preference number: 2 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLYLIHV*CLGLED
Trigger: GTCCTCTAGCCCCAGGCAGCACACATGTATCAAATA...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACATTGCTATAACAAAATaGCTCAGCAGGGTAATTTGT +
Preference number: 2 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNIAITK*LSRVIC
Trigger: ACAAATTACCCTGCTGAGGCATTTTGTTATAGCAAT...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCCTCCAAGACCACTTGTaGCATGACTTTGAATTTGGG +
Preference number: 2 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLLQDHL*HDFEFG
Trigger: CCCAAATTCAAAGTCATGTCACAAGTGGTCTTGGAG...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR GCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCGAGGCTCATTGGACTTaGAAACTTTATATGCCCCAG +
Preference number: 2 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLEAHWT*KLYMPQ
Trigger: CTGGGGCATATAAAGTTTGCAAGTCCAATGAGCCTC...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGATACATAGAAGTTCTTTaGGCATTTACACCTTCACCT +
Preference number: 2 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGYIEVL*AFTPSP
Trigger: AGGTGAAGGTGTAAATGCTCAAAGAACTTCTATGTA...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCTTGATGACATATTCTTaGCAGTTGCTTGTGCCCCAT +
Preference number: 2 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLLMTYS*QLLVPH
Trigger: ATGGGGCACAAGCAACTGTCAAGAATATGTCATCAA...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCCAGTGTTTGATTCTCTaGGAAGAGCAGGAATCTAGT +
Preference number: 2 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLQCLIL*EEQESS
Trigger: ACTAGATTCCTGCTCTTCCCAGAGAATCAAACACTG...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCAATATTCTTCTCCTCTaGAAGCTCTTGACCTGGGAA +
Preference number: 2 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLNILLL*KLLTWE
Trigger: TTCCCAGGTCAAGAGCTTCCAGAGGAGAAGAATATT...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 90 bp GTCTGGAAACAGAAGTCTACTTTGAATCGGTTTAAGATTCTAAAGTaGACAGTCACTTTCCATTGCTATAACAAAATGCCTCAGCAGGGT +
Preference number: 2 (lower is better)
Translates to: VWKQKSTLNRFKILK*TVTFHCYNKMPQQG
Trigger: ACCCTGCTGAGGCATTTTGTTATAGCAATGGAAAGTGACTGTCAACTTTAGAATCTTAAACCGATTCAAAGTAGACTTCTGTTTCCAGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR TCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCCAGAGCACATTAATTTaGGCTCCAGAACACATTGAA +
Preference number: 2 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLQSTLI*APEHIE
Trigger: TTCAATGTGTTCTGGAGCTCAAATTAATGTGCTCTG...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCACAATACAGCTGGCCTaGGTTTTATTGATGACATAT +
Preference number: 2 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLTIQLA*VLLMTY
Trigger: ATATGTCATCAATAAAACCCAGGCCAGCTGTATTGT...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 90 bp TTGAGCATTTACACCTTCACCTTATTATTCCATCTGTGGCCTTTTTaGTCTCTTTTGAATGAAATAGGACAAATAGGACTGTCATGTCTG +
Preference number: 2 (lower is better)
Translates to: LSIYTFTLLFHLWPF*SLLNEIGQIGLSCL
Trigger: CAGACATGACAGTCCTATTTGTCCTATTTCATTCAAAAGAGACAAAAAAGGCCACAGATGGAATAATAAGGTGAAGGTGTAAATGCTCAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp GGCAGGTACCCCATGGCTCTGGCAGCCCCAAGCTCTTaGGGTTTCCAAGGCAACCCAGGCTTCACCTTCACA +
Preference number: 3 (lower is better)
Translates to: GRYPMALAAPSS*GFQGNPGFTFT
Trigger: TGTGAAGGTGAAGCCTGGGTTGCCTTGGAAACCCCAAGAGCTTGGGGCTGCCAGAGCCATGGGGTACCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp TTGTGGGCTGGCTCCACTCCATGTGAGAGCTTTCCTTaGCAGGTACCCCATGGCTCTGGCAGCCCCAAGCTC +
Preference number: 3 (lower is better)
Translates to: LWAGSTPCESFP*QVPHGSGSPKL
Trigger: GAGCTTGGGGCTGCCAGAGCCATGGGGTACCTGCCAAGGAAAGCTCTCACATGGAGTGGAGCCAGCCCACAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 72 bp CTCTCAGCATCACCTCTGATGAAGCCAGCAGTGACCTaGAGGTACAACCAGGCACAGGGCAGCTGGAGGTCC +
Preference number: 3 (lower is better)
Translates to: LSASPLMKPAVT*RYNQAQGSWRS
Trigger: GGACCTCCAGCTGCCCTGTGCCTGGTTGTACCTGCAGGTCACTGCTGGCTTCATCAGAGGTGATGCTGAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp ACACACTTCTCCCTTGTGGGCTGGCTCCACTCCATGTaGGAGCTTTCCTTGGCAGGTACCCCATGGCTCTGG +
Preference number: 3 (lower is better)
Translates to: THFSLVGWLHSM*ELSLAGTPWLW
Trigger: CCAGAGCCATGGGGTACCTGCCAAGGAAAGCTCTCACATGGAGTGGAGCCAGCCCACAAGGGAGAAGTGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp ACATGGAGACACAGTTGCATGGTGACCTGGTTGGAGTaGGATACCAGGGTCACTCTCTTCCCCTGGGCTCTG +
Preference number: 3 (lower is better)
Translates to: TWRHSCMVTWLE*DTRVTLFPWAL
Trigger: CAGAGCCCAGGGGAAGAGAGTGACCCTGGTATCCCACTCCAACCAGGTCACCATGCAACTGTGTCTCCATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp GCTTGCTCCACATGGAGACACAGTTGCATGGTGACCTaGTTGGAGTGGGATACCAGGGTCACTCTCTTCCCC +
Preference number: 3 (lower is better)
Translates to: ACSTWRHSCMVT*LEWDTRVTLFP
Trigger: GGGGAAGAGAGTGACCCTGGTATCCCACTCCAACCAGGTCACCATGCAACTGTGTCTCCATGTGGAGCAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp CCACATGACTACTGGGTCCCAAAGATTCCCAGACCATaGTCCAGGAGGTGTAGTCACCTCCCCAAGGCCCTT +
Preference number: 3 (lower is better)
Translates to: PHDYWVPKIPRP*SRRCSHLPKAL
Trigger: AAGGGCCTTGGGGAGGTGACTACACCTCCTGGACCATGGTCTGGGAATCTTTGGGACCCAGTAGTCATGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp GCACAGGGCAGCTGGAGGTCCCAAAGTGAGTCTCTCTaGGTAACACTCGAGCTTACGTCTGTGAATGGGCCA +
Preference number: 3 (lower is better)
Translates to: AQGSWRSQSESL*VTLELTSVNGP
Trigger: TGGCCCATTCACAGACGTAAGCTCGAGTGTTACTCAGAGAGACTCACTTTGGGACCTCCAGCTGCCCTGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 72 bp GTCACCTCCCCAAGGCCCTTCCAGAGCGCGCCAAATTaGACAGTGTTTGATTCTCTGGGAAGAGCAGGAATC +
Preference number: 3 (lower is better)
Translates to: VTSPRPFQSAPN*TVFDSLGRAGI
Trigger: GATTCCTGCTCTTCCCAGAGAATCAAACACTGTGCAATTTGGCGCGCTCTGGAAGGGCCTTGGGGAGGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 72 bp GTGCGGCAGAAGCTGCCGAGTTCTTCTGCTGCTGATTaGTGGGGCTGGAACATGGCTCCTCATTCGATTACA +
Preference number: 3 (lower is better)
Translates to: VRQKLPSSSAAD*WGWNMAPHSIT
Trigger: TGTAATCGAATGAGGAGCCATGTTCCAGCCCCAGCAATCAGCAGCAGAAGAACTCGGCAGCTTCTGCCGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp TGTAGGGCGCCTTCCTTCCCAAAAAGCTCTGGAGGCTaGGGGGTACAAAGATGGCCTGAGAACACAGACACT +
Preference number: 3 (lower is better)
Translates to: CRAPSFPKSSGG*GVQRWPENTDT
Trigger: AGTGTCTGTGTTCTCAGGCCATCTTTGTACCCCCCAGCCTCCAGAGCTTTTTGGGAAGGAAGGCGCCCTACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp CAAGGACCAGGCCTTCCTGAAACCAGCTATGGCTGCTaGAATTCACCTTTTCACACACATACCCCGTGCCCC +
Preference number: 3 (lower is better)
Translates to: QGPGLPETSYGC*NSPFHTHTPCP
Trigger: GGGGCACGGGGTATGTGTGTGAAAAGGTGAATTCCAGCAGCCATAGCTGGTTTCAGGAAGGCCTGGTCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTAGCTGTCTCTGCTTCTaGAGAGAGGCCCTTCCATCC +
Preference number: 3 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLSCLCF*REALPS
Trigger: GGATGGAAGGGCCTCTCTCAAGAAGCAGAGACAGCT...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp ATCGATGCCAGGAGTTCTAGGCAAACCAAGCAGGGATaGGGGCTGGTGTATAACAAGGACCAGGCCTTCCTG +
Preference number: 3 (lower is better)
Translates to: IDARSSRQTKQG*GLVYNKDQAFL
Trigger: CAGGAAGGCCTGGTCCTTGTTATACACCAGCCCTCATCCCTGCTTGGTTTGCCTAGAACTCCTGGCATCGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp GTACAACCAGGCACAGGGCAGCTGGAGGTCCCAAAGTaGGTCTCTCTGAGTAACACTCGAGCTTACGTCTGT +
Preference number: 3 (lower is better)
Translates to: VQPGTGQLEVPK*VSLSNTRAYVC
Trigger: ACAGACGTAAGCTCGAGTGTTACTCAGAGAGACTCACTTTGGGACCTCCAGCTGCCCTGTGCCTGGTTGTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 72 bp ACCGAAAGTCTTGCTTGCTCCACATGGAGACACAGTTaGATGGTGACCTGGTTGGAGTGGGATACCAGGGTC +
Preference number: 3 (lower is better)
Translates to: TESLACSTWRHS*MVTWLEWDTRV
Trigger: GACCCTGGTATCCCACTCCAACCAGGTCACCATGCAACTGTGTCTCCATGTGGAGCAAGCAAGACTTTCGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 72 bp ATGACGGAGACCGTAGCTGCCAGAGGTAGCTGTCTCTaGTTCTTGAGAGAGGCCCTTCCATCCTTTCCATTC +
Preference number: 3 (lower is better)
Translates to: MTETVAARGSCL*FLREALPSFPF
Trigger: GAATGGAAAGGATGGAAGGGCCTCTCTCAAGAAGCAGAGACAGCTACCTCTGGCAGCTACGGTCTCCGTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 72 bp ACAAGCAGCACAGTCCAGCCTATCATAGCGACACCCTaGTCCCTGGCACCAACTTCCTTCTCTCTTAGTGAG +
Preference number: 3 (lower is better)
Translates to: TSSTVQPIIATP*SLAPTSFSLSE
Trigger: CTCACTAAGAGAGAAGGAAGTTGGTGCCAGGGAGCAGGGTGTCGCTATGATAGGCTGGACTGTGCTGCTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp CGGCAGAAGCTGCCGAGTTCTTCTGCTGCTGATTGCTaGGGCTGGAACATGGCTCCTCATTCGATTACATCT +
Preference number: 3 (lower is better)
Translates to: RQKLPSSSAADC*GWNMAPHSITS
Trigger: AGATGTAATCGAATGAGGAGCCATGTTCCAGCCCCAGCAATCAGCAGCAGAAGAACTCGGCAGCTTCTGCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGTGCATGGTGACCTGGTaGGAGTGGGATACCAGGGTC +
Preference number: 3 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLCMVTW*EWDTRV
Trigger: GACCCTGGTATCCCACTCCAACCAGGTCACCATGCA...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp CGCGTTCTTCAGATCTCCAACTCCTTCCAGCTTTGTTaGCTACACACACTTCTCCCTTGTGGGCTGGCTCCA +
Preference number: 3 (lower is better)
Translates to: RVLQISNSFQLC*LHTLLPCGLAP
Trigger: TGGAGCCAGCCCACAAGGGAGAAGTGTGTGTAGTCAACAAAGCTGGAAGGAGTTGGAGATCTGAAGAACGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp GTTCTACATCCAGATACGCAGGCAGCAGGAAGAGAATaGCACTGGGCCTGGCTTGAGCATTTGAAACCCCCA +
Preference number: 3 (lower is better)
Translates to: VLHPDTQAAGRE*HWAWLEHLKPP
Trigger: TGGGGGTTTCAAATGCTCAAGCCAGGCCCAGTGTCATTCTCTTCCTGCTGCCTGCGTATCTGGATGTAGAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp CTTCCAGCTTTGTTGACTACACACACTTCTCCCTTGTaGGCTGGCTCCACTCCATGTGAGAGCTTTCCTTGG +
Preference number: 3 (lower is better)
Translates to: LPALLTTHTSPL*AGSTPCESFPW
Trigger: CCAAGGAAAGCTCTCACATGGAGTGGAGCCAGCCCACAAGGGAGAAGTGTGTGTAGTCAACAAAGCTGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACTGCATGGTGACCTGGTaGGAGTGGGATACCAGGGTC +
Preference number: 3 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNCMVTW*EWDTRV
Trigger: GACCCTGGTATCCCACTCCAACCAGGTCACCATGCA...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGAGCTGTCTCTGCTTCTaGAGAGAGGCCCTTCCATCC +
Preference number: 3 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLSCLCF*REALPS
Trigger: GGATGGAAGGGCCTCTCTCAAGAAGCAGAGACAGCT...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp ACTGGTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTGGCTCATATGGCCATGGCTTaGCTCAGGCATCCACCACAC +
Preference number: 3 (lower is better)
Translates to: TGDQDTSQPTSHRAPKLAHMAMA*LRHPPH
Trigger: GTGTGGTGGATGCCTGAGCAAAGCCATGGCCATATG...AGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCACCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTTTCAGGAGGTCCTCTTaGGCAGAGGTACTAGAACAG +
Preference number: 3 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLFRRSS*AEVLEQ
Trigger: CTGTTCTAGTACCTCTGCCAAAGAGGACCTCCTGAA...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTGTCTGTCCTGAGTATTaGAAACCCCAAGACCATGCC +
Preference number: 3 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLVCPEY*KPQDHA
Trigger: GGCATGGTCTTGGGGTTTCAAATACTCAGGACAGAC...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGACAATTTCATCCCTGCTaGTTGGTGAATCTGCAGTGG +
Preference number: 3 (lower is better)
Translates to: APFVWPLVTALASQAQLRQFHPC*LVNLQW
Trigger: CCACTGCAGATTCACCAACAAGCAGGGATGAAATTG...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTACATTTCCCTGGAGCTaGCTTGTAGTTTCAGAGGTC +
Preference number: 3 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLTFPWS*LVVSEV
Trigger: GACCTCTGAAACTACAAGCAAGCTCCAGGGAAATGT...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGACCGGCTTTCTGTTGTaGACCATTTCCTTCGGTGCC +
Preference number: 3 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLTGFLL*TISFGA
Trigger: GGCACCGAAGGAAATGGTCAACAACAGAAAGCCGGT...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp AAGGCCCTTCCAGAGCGCGCCAAATTGCACAGTGTTTaGTTCTCTGGGAAGAGCAGGAATCTAGTGTGGACT +
Preference number: 3 (lower is better)
Translates to: KALPERAKLHSV*FSGKSRNLVWT
Trigger: AGTCCACACTAGATTCCTGCTCTTCCCAGAGAATCAAACACTGTGCAATTTGGCGCGCTCTGGAAGGGCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 72 bp GCCTGCAACCCTGAGCTGACCAGGAGCAAACAGGTCTaGCCTGAAATATTAAGTCCAAGTACCAGGAGATTG +
Preference number: 3 (lower is better)
Translates to: ACNPELTRSKQV*PEILSPSTRRL
Trigger: CAATCTCCTGGTACTTGGACTTAATATTTCAGGGCAGACCTGTTTGCTCCTGGTCAGCTCAGGGTTGCAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp CAATGGCCATGTAAGGACTCAGGCAATAGCCACATATaGCCATGGCTTTGCTCAGGCATCCACCACACATGT +
Preference number: 3 (lower is better)
Translates to: QWPCKDSGNSHI*PWLCSGIHHTC
Trigger: ACATGTGTGGTGGATGCCTGAGCAAAGCCATGGCCATATGTGGCTATTGCCTGAGTCCTTACATGGCCATTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp CATCTGGATCCACAGGCAGCAGGAAGAGAGAGCCATTaGGTCTGTCCTGAGTATTTGAAACCCCAAGACCAT +
Preference number: 3 (lower is better)
Translates to: HLDPQAAGRESH*VCPEYLKPQDH
Trigger: ATGGTCTTGGGGTTTCAAATACTCAGGACAGACCCAATGGCTCTCTCTTCCTGCTGCCTGTGGATCCAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp GCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATaGCCCATTAAACCCCAAAAGCGTTCCACGGCTTTT +
Preference number: 3 (lower is better)
Translates to: ALSTLSSMFLRV*PIKPQKRSTAF
Trigger: AAAAGCCGTGGAACGCTTTTGGGGTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTCATATGGCCATGGCTTaGCTCAGGCATCCACCACAC +
Preference number: 3 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTHMAMA*LRHPPH
Trigger: GTGTGGTGGATGCCTGAGCAAAGCCATGGCCATATG...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGACAAATTGCACAGTGTTaGATTCTCTGGGAAGAGCAG +
Preference number: 3 (lower is better)
Translates to: APFVWPLVTALASQAQLRQIAQC*ILWEEQ
Trigger: CTGCTCTTCCCAGAGAATCAAACACTGTGCAATTTG...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGCTCCTCTGGAAGCTCTaGACCTGGGAATCAGAATCT +
Preference number: 3 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLLLWKL*TWESES
Trigger: AGATTCTGATTCCCAGGTCAAGAGCTTCCAGAGGAG...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGCTCCTTCCAGCTTTGTaGACTACACACACTTCTCCC +
Preference number: 3 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLLLPAL*TTHTSP
Trigger: GGGAGAAGTGTGTGTAGTCAACAAAGCTGGAAGGAG...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp TTCTCTAAAGACTTAACATCCCCACATTGGGGTCCCTaGGAGCAGGCAGTGACCAGTAAAGGCAGCTTAGGA +
Preference number: 3 (lower is better)
Translates to: FSKDLTSPHWGP*EQAVTSKGSLG
Trigger: TCCTAAGCTGCCTTTACTGGTCACTGCCTGCTCTCAGGGACCCCAATGTGGGGATGTTAAGTCTTTAGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp GATGAGGGCTGGTGTATAACAAGGACCAGGCCTTCCTaGAACCAGCTATGGCTGCTGGAATTCACCTTTTCA +
Preference number: 3 (lower is better)
Translates to: DEGWCITRTRPS*NQLWLLEFTFS
Trigger: TGAAAAGGTGAATTCCAGCAGCCATAGCTGGTTTCAGGAAGGCCTGGTCCTTGTTATACACCAGCCCTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp CAGGAAGAGAGAGCCATTGGGTCTGTCCTGAGTATTTaGAACCCCAAGACCATGCCCAGTAATACACTCCCT +
Preference number: 3 (lower is better)
Translates to: QEERAIGSVLSI*NPKTMPSNTLP
Trigger: AGGGAGTGTATTACTGGGCATGGTCTTGGGGTTTCAAATACTCAGGACAGACCCAATGGCTCTCTCTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp ACAGGCAGCAGGAAGAGAGAGCCATTGGGTCTGTCCTaGGTATTTGAAACCCCAAGACCATGCCCAGTAATA +
Preference number: 3 (lower is better)
Translates to: TGSRKREPLGLS*VFETPRPCPVI
Trigger: TATTACTGGGCATGGTCTTGGGGTTTCAAATACTCAGGACAGACCCAATGGCTCTCTCTTCCTGCTGCCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGACTTAACATCCCCACATaGGGGTCCCTGAGAGCAGGC +
Preference number: 3 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGLNIPT*GSLRAG
Trigger: GCCTGCTCTCAGGGACCCCAATGTGGGGATGTTAAG...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGATGTTGTGTTCCAGTATaGGCTTCATCCAGCAATCTT +
Preference number: 3 (lower is better)
Translates to: APFVWPLVTALASQAQLRCCVPV*ASSSNL
Trigger: AAGATTGCTGGATGAAGCCAATACTGGAACACAACA...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGCAATTTCATCCCTGCTaGTTGGTGAATCTGCAGTGG +
Preference number: 3 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLQFHPC*LVNLQW
Trigger: CCACTGCAGATTCACCAACAAGCAGGGATGAAATTG...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACTTCAGGAGGTCCTCTTaGGCAGAGGTACTAGAACAG +
Preference number: 3 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNFRRSS*AEVLEQ
Trigger: CTGTTCTAGTACCTCTGCCAAAGAGGACCTCCTGAA...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGAACTTGTGACATGACTTaGAATTTGGGAAGAGCTCCA +
Preference number: 3 (lower is better)
Translates to: APFVWPLVTALASQAQLRTCDMT*NLGRAP
Trigger: TGGAGCTCTTCCCAAATTCAAAGTCATGTCACAAGT...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGACATTTCCCTGGAGCTaGCTTGTAGTTTCAGAGGTC +
Preference number: 3 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLTFPWS*LVVSEV
Trigger: GACCTCTGAAACTACAAGCAAGCTCCAGGGAAATGT...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp GTCTGTGAATGGGCCAGAGTGAGAAAAGACCTCTCCTaGTTAGACCCTAAGAGACACAGAAGCAAAGCAGCA +
Preference number: 3 (lower is better)
Translates to: VCEWARVRKDLS*LDPKRHRSKAA
Trigger: TGCTGCTTTGCTTCTGTGTCTCTTAGGGTCTAATCAGGAGAGGTCTTTTCTCACTCTGGCCCATTCACAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 72 bp TTCCTGGGAGAGATTATAACCAAGGTGGCCAACAAGTaGCAGAATCAAAGTGGGCACATTGAAGTTCCGTGG +
Preference number: 3 (lower is better)
Translates to: FLGEIITKVANK*QNQSGHIEVPW
Trigger: CCACGGAACTTCAATGTGCCCACTTTGATTCTGGCACTTGTTGGCCACCTTGGTTATAATCTCTCCCAGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 72 bp TATCTTTCTTGTATCCTTGACCCTAAAGCCAAACCGTaGGGCAGAAGCTGCCGAGTTCTTCTGCTGCTGATT +
Preference number: 3 (lower is better)
Translates to: YLSCILDPKAKP*GRSCRVLLLLI
Trigger: AATCAGCAGCAGAAGAACTCGGCAGCTTCTGCCGCACGGTTTGGCTTTAGGGTCAAGGATACAAGAAAGATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp TCCAGAGCGCGCCAAATTGCACAGTGTTTGATTCTCTaGGAAGAGCAGGAATCTAGTGTGGACTTCTTTAGC +
Preference number: 3 (lower is better)
Translates to: SRARQIAQCLIL*EEQESSVDFFS
Trigger: GCTAAAGAAGTCCACACTAGATTCCTGCTCTTCCCAGAGAATCAAACACTGTGCAATTTGGCGCGCTCTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp ATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTaGCTTCCAGTCCTAGGGATAACTCCCCATGTTCAG +
Preference number: 3 (lower is better)
Translates to: IQVNLHLTELPS*LPVLGITPHVQ
Trigger: CTGAACATGGGGAGTTATCCCTAGGACTGGAAGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp ACTGGTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTGGCTAGAGGCTCATTGGACTaGCAAACTTTATATGCCCCA +
Preference number: 3 (lower is better)
Translates to: TGDQDTSQPTSHRAPKLARGSLD*QTLYAP
Trigger: TGGGGCATATAAAGTTTGCAAGTCCAATGAGCCTCT...AGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCACCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTATCAAAGTGGGCACATaGAAGTTCCGTGGGGTCAGT +
Preference number: 3 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTIKVGT*KFRGVS
Trigger: ACTGACCCCACGGAACTTCAATGTGCCCACTTTGAT...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGTGTTGTGTTCCAGTATaGGCTTCATCCAGCAATCTT +
Preference number: 3 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLCCVPV*ASSSNL
Trigger: AAGATTGCTGGATGAAGCCAATACTGGAACACAACA...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGACTTGTGACATGACTTaGAATTTGGGAAGAGCTCCA +
Preference number: 3 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLTCDMT*NLGRAP
Trigger: TGGAGCTCTTCCCAAATTCAAAGTCATGTCACAAGT...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp TCCCAGAGTCATCTCTGTCTATCTGAGGTGCCTCTCTaGCGGGTCCCTCTTGAAGATGAAGAATTATTAGAG +
Preference number: 3 (lower is better)
Translates to: SQSHLCLSEVPL*RVPLEDEELLE
Trigger: CTCTAATAATTCTTCATCTTCAAGAGGGACCCGTCAGAGAGGCACCTCAGATAGACAGAGATGACTCTGGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp CAGAGGTCTAGTCCACTATTGTCATGGCAGGAGGCATaGCAGCATAGAGGCAGACATGAATCTGGAGAAATA +
Preference number: 3 (lower is better)
Translates to: QRSSPLLSWQEA*QHRGRHESGEI
Trigger: TATTTCTCCAGATTCATGTCTGCCTCTATGCTGTCATGCCTCCTGCCATGACAATAGTGGACTAGACCTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp GGCCACTTACTAATATTCTTCTCCTCTGGAAGCTCTTaGCCTGGGAATCAGAATCTAGATTGCCCTCAGCAC +
Preference number: 3 (lower is better)
Translates to: GHLLIFFSSGSS*PGNQNLDCPQH
Trigger: GTGCTGAGGGCAATCTAGATTCTGATTCCCAGGTCAAGAGCTTCCAGAGGAGAAGAATATTAGTAAGTGGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp GGAGCTCTTGACTCTAGCTGCATATATATCAAAAGATaGCCTAGTCGGCCATCACTGGAAAGAGAGGCTCAT +
Preference number: 3 (lower is better)
Translates to: GALDSSCIYIKR*PSRPSLEREAH
Trigger: ATGAGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp ATATCCGTGTGTGCAAGGCACCTCTATAGCAACATCTaGAACCTTCCACAATACAGCTGGCCTGGGTTTTAT +
Preference number: 3 (lower is better)
Translates to: ISVCARHLYSNI*NLPQYSWPGFY
Trigger: ATAAAACCCAGGCCAGCTGTATTGTGGAAGGTTCCAGATGTTGCTATAGAGGTGCCTTGCACACACGGATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTAGAGGCTCATTGGACTaGCAAACTTTATATGCCCCA +
Preference number: 3 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTRGSLD*QTLYAP
Trigger: TGGGGCATATAAAGTTTGCAAGTCCAATGAGCCTCT...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACATTGATGACATATTCTaGACAGTTGCTTGTGCCCCA +
Preference number: 3 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNIDDIF*TVACAP
Trigger: TGGGGCACAAGCAACTGTCAAGAATATGTCATCAAT...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp CCAAAAACAGTCCAAGAAACCTCTAGGATGAGGAGTTaGCTAAAATTTCCACCCAGAGAACACAGAGCAAGC +
Preference number: 3 (lower is better)
Translates to: PKTVQETSRMRS*LKFPPREHRAS
Trigger: GCTTGCTCTGTGTTCTCTGGGTGGAAATTTTAGCCAACTCCTCATCCTAGAGGTTTCTTGGACTGTTTTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACGGAAAGAGAGGCTCATaGGACTTGCAAACTTTATAT +
Preference number: 3 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNGKRGS*DLQTLY
Trigger: ATATAAAGTTTGCAAGTCCAATGAGCCTCTCTTTCC...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp CCTACTGTTCATAGCATGTTCCTGCCTTTCATTAGATaGCCTTCAACTCCCAGAGTCATCTCTGTCTATCTG +
Preference number: 3 (lower is better)
Translates to: PTVHSMFLPFIR*PSTPRVISVYL
Trigger: CAGATAGACAGAGATGACTCTGGGAGTTGAAGGTCATCTAATGAAAGGCAGGAACATGCTATGAACAGTAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 72 bp ACTAAACCTTCCTCAAACCATAGCCAGGGACTTGAATaGTTAGTCTCCAAGACCACTTGTGACATGACTTTG +
Preference number: 3 (lower is better)
Translates to: TKPSSNHSQGLE*LVSKTTCDMTL
Trigger: CAAAGTCATGTCACAAGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTTAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 72 bp CTGCACCGGCTTTCTGTTGTTGACCATTTCCTTCGGTaGCTCGGAGTTTCTTTAATTCCTTTTTACAAGTTG +
Preference number: 3 (lower is better)
Translates to: LHRLSVVDHFLR*LGVSLIPFYKL
Trigger: CAACTTGTAAAAAGGAATTAAAGAAACTCCGAGGCACCGAAGGAAATGGTCAACAACAGAAAGCCGGTGCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp GCAGTCTCTAGGCCACTTACTAATATTCTTCTCCTCTaGAAGCTCTTGACCTGGGAATCAGAATCTAGATTG +
Preference number: 3 (lower is better)
Translates to: AVSRPLTNILLL*KLLTWESESRL
Trigger: CAATCTAGATTCTGATTCCCAGGTCAAGAGCTTCCAGAGGAGAAGAATATTAGTAAGTGGCCTAGAGACTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGACAAATTGCACAGTGTTaGATTCTCTGGGAAGAGCAG +
Preference number: 3 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGQIAQC*ILWEEQ
Trigger: CTGCTCTTCCCAGAGAATCAAACACTGTGCAATTTG...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGAATTCTTGACAGTTGCTaGTGCCCCATACAATTTAGG +
Preference number: 3 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGILDSC*CPIQFR
Trigger: CCTAAATTGTATGGGGCACAAGCAACTGTCAAGAAT...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCGACATGACTTTGAATTaGGGAAGAGCTCCAAGGCCT +
Preference number: 3 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLDMTLN*GRAPRP
Trigger: AGGCCTTGGAGCTCTTCCCAAATTCAAAGTCATGTC...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp CATTGCTATAACAAAATGCCTCAGCAGGGTAATTTGTaGAAAGGCTTATTTACCCCCACAGTTTGGAGGTTG +
Preference number: 3 (lower is better)
Translates to: HCYNKMPQQGNL*KGLFTPTVWRL
Trigger: CAACCTCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTTTGTTATAGCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp CAACTTCCTTCTCTCTTAGTGAGTGTTCTATTGCTGTaGGGAGACACTAAGACTATGACAACGCTTAGAAAG +
Preference number: 3 (lower is better)
Translates to: QLPSLLVSVLLL*GDTKTMTTLRK
Trigger: CTTTCTAAGCGTTGTCATAGTCTTAGTGTCTCCTCACAGCAATAGAACACTCACTAAGAGAGAAGGAAGTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp CATGACTTTGAATTTGGGAAGAGCTCCAAGGCCTGCTaGAGAATTTCATCACCCTTGATTATAGGAATAAAG +
Preference number: 3 (lower is better)
Translates to: HDFEFGKSSKAC*RISSPLIIGIK
Trigger: CTTTATTCCTATAATCAAGGGTGATGAAATTCTCCAGCAGGCCTTGGAGCTCTTCCCAAATTCAAAGTCATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGAGGAAAGAGAGGCTCATaGGACTTGCAAACTTTATAT +
Preference number: 3 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGGKRGS*DLQTLY
Trigger: ATATAAAGTTTGCAAGTCCAATGAGCCTCTCTTTCC...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR-3UTR CAA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCATTCTTGACAGTTGCTaGTGCCCCATACAATTTAGG +
Preference number: 3 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLILDSC*CPIQFR
Trigger: CCTAAATTGTATGGGGCACAAGCAACTGTCAAGAAT...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR GCA 72 bp TTCAAAAGTCCCTACAGTCTATTACAGTCTCAACACTaGCTAAAAGTCCAAAGGTCAAAGTCTCTTCTGAGA +
Preference number: 3 (lower is better)
Translates to: FKSPYSLLQSQH*LKVQRSKSLLR
Trigger: TCTCAGAAGAGACTTTGACCTTTGGACTTTTAGGCAGTGTTGAGACTGTAATAGACTGTAGGGACTTTTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR TCA 72 bp AATCTTCGAGGGTCTTCAACCCAGAGCACATTAATTTaGGCTCCAGAACACATTGAAATGAAATATACATCC +
Preference number: 3 (lower is better)
Translates to: NLRGSSTQSTLI*APEHIEMKYTS
Trigger: GGATGTATATTTCATTTCAATGTGTTCTGGAGCTCAAATTAATGTGCTCTGGGTTGAAGACCCTCGAAGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CCA 72 bp TTGAACCACGACAATATGTGTATATACCATCTTGTCTaGAAACAGAAGTCTACTTTGAATCGGTTTAAGATT +
Preference number: 3 (lower is better)
Translates to: LNHDNMCIYHLV*KQKSTLNRFKI
Trigger: AATCTTAAACCGATTCAAAGTAGACTTCTGTTTCCAGACAAGATGGTATATACACATATTGTCGTGGTTCAA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTTGCCCCGGGCAGCGATaGAGGCAGAGTTGGCCACCA +
Preference number: 4 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLCPGQR*RQSWPP
Trigger: TGGTGGCCAACTCTGCCTTCATCGCTGCCCGGGGCA...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp ACTGGTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTGGCTTGCCCCGGGCAGCGATaGAGGCAGAGTTGGCCACCA +
Preference number: 4 (lower is better)
Translates to: TGDQDTSQPTSHRAPKLACPGQR*RQSWPP
Trigger: TGGTGGCCAACTCTGCCTTCATCGCTGCCCGGGGCA...AGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCACCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGAGATGGCCCGTGGTTCTaGGAAGCCGGGGTTATCCTC +
Preference number: 4 (lower is better)
Translates to: APFVWPLVTALASQAQLRDGPWF*EAGVIL
Trigger: GAGGATAACCCCGGCTTCTCAGAACCACGGGCCATC...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTTGGAAGAGGCCGTCCTaGCTCCCAGTTGGCCCTTCT +
Preference number: 4 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLWKRPS*LPVGPS
Trigger: AGAAGGGCCAACTGGGAGCCAGGACGGCCTCTTCCA...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGAAGGGGCCATGAAACCTaGGGTCCCTGCGTAGCCCTT +
Preference number: 4 (lower is better)
Translates to: APFVWPLVTALASQAQLRRGHET*GPCVAL
Trigger: AAGGGCTACGCAGGGACCCCAGGTTTCATGGCCCCT...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTAGGGGCCATGAAACCTaGGGTCCCTGCGTAGCCCTT +
Preference number: 4 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLRGHET*GPCVAL
Trigger: AAGGGCTACGCAGGGACCCCAGGTTTCATGGCCCCT...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp TGCTCCACATGGAGACACAGTTGCATGGTGACCTGGTaGGAGTGGGATACCAGGGTCACTCTCTTCCCCTGG +
Preference number: 4 (lower is better)
Translates to: CSTWRHSCMVTW*EWDTRVTLFPW
Trigger: CCAGGGGAAGAGAGTGACCCTGGTATCCCACTCCAACCAGGTCACCATGCAACTGTGTCTCCATGTGGAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGGCCTGGAGCAAAGGCTaGAAGAGGCCGTCCTGGCTC +
Preference number: 4 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLAWSKG*KRPSWL
Trigger: GAGCCAGGACGGCCTCTTCCAGCCTTTGCTCCAGGC...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp CTGGGTCTCCTCGAAGGGACACCCTTGATGCACGCCTaGCCTCAGTGGCTTCCCTTAATTTTGGAGGAGGAT +
Preference number: 4 (lower is better)
Translates to: LGLLEGTPLMHA*PQWLPLILEED
Trigger: ATCCTCCTCCAAAATTAAGGGAAGCCACTGAGGCAAGGCGTGCATCAAGGGTGTCCCTTCGAGGAGACCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGACCTTGCTGGCCTGGCTaGACTTCTCTGGGTACTTCA +
Preference number: 4 (lower is better)
Translates to: APFVWPLVTALASQAQLRPCWPG*TSLGTS
Trigger: TGAAGTACCCAGAGAAGTTCAGCCAGGCCAGCAAGG...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGCTCACACTTGGACAGTaGGGGCAACCGGAGCTTGGC +
Preference number: 4 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLLTLGQ*GQPELG
Trigger: GCCAAGCTCCGGTTGCCCCCACTGTCCAAGTGTGAG...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp GACCGAAAGTCTTGCTTGCTCCACATGGAGACACAGTaGCATGGTGACCTGGTTGGAGTGGGATACCAGGGT +
Preference number: 4 (lower is better)
Translates to: DRKSCLLHMETQ*HGDLVGVGYQG
Trigger: ACCCTGGTATCCCACTCCAACCAGGTCACCATGCAACTGTGTCTCCATGTGGAGCAAGCAAGACTTTCGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp ACTGGTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTGGCTGCCGATGGGTTGCTCTaGGCACAGGCTCTCAAACTC +
Preference number: 4 (lower is better)
Translates to: TGDQDTSQPTSHRAPKLAADGLL*AQALKL
Trigger: GAGTTTGAGAGCCTGTGCTCAGAGCAACCCATCGGC...AGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCACCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR GCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGAAGTTGCAGAAGAGTGTaGCCTGTGGGTCCAGGTACT +
Preference number: 4 (lower is better)
Translates to: APFVWPLVTALASQAQLRSCRRV*PVGPGT
Trigger: AGTACCTGGACCCACAGGGCACACTCTTCTGCAACT...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGGAAGAGTGTGCCCTGTaGGTCCAGGTACTCAGCCAG +
Preference number: 4 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLEECAL*VQVLSQ
Trigger: CTGGCTGAGTACCTGGACCCACAGGGCACACTCTTC...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGATCAAGTGCTCCATTGTaGCCTGGAGCAAAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: APFVWPLVTALASQAQLRSSAPL*PGAKAG
Trigger: TCCAGCCTTTGCTCCAGGCCACAATGGAGCACTTGA...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTACCAGTCTTCACCTATaGGCTGGGCTTCCAACCACT +
Preference number: 4 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLTSLHL*AGLPTT
Trigger: AGTGGTTGGAAGCCCAGCCCATAGGTGAAGACTGGT...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACCCTCCTGCCAGGGAATaGAGCAGTTGCCAGAGGCGA +
Preference number: 4 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNPPARE*SSCQRR
Trigger: TCGCCTCTGGCAACTGCTCCATTCCCTGGCAGGAGG...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp CAAGGCCCTTCCAGAGCGCGCCAAATTGCACAGTGTTaGATTCTCTGGGAAGAGCAGGAATCTAGTGTGGAC +
Preference number: 4 (lower is better)
Translates to: QGPSRARQIAQC*ILWEEQESSVD
Trigger: GTCCACACTAGATTCCTGCTCTTCCCAGAGAATCAAACACTGTGCAATTTGGCGCGCTCTGGAAGGGCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp AGGTGGCCAACAAGTGCCAGAATCAAAGTGGGCACATaGAAGTTCCGTGGGGTCAGTGTCCAGGCAAGACTT +
Preference number: 4 (lower is better)
Translates to: RWPTSARIKVGT*KFRGVSVQARL
Trigger: AAGTCTTGCCTGGACACTGACCCCACGGAACTTCAATGTGCCCACTTTGATTCTGGCACTTGTTGGCCACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp ACGCGTTCTTCAGATCTCCAACTCCTTCCAGCTTTGTaGACTACACACACTTCTCCCTTGTGGGCTGGCTCC +
Preference number: 4 (lower is better)
Translates to: TRSSDLQLLPAL*TTHTSPLWAGS
Trigger: GGAGCCAGCCCACAAGGGAGAAGTGTGTGTAGTCAACAAAGCTGGAAGGAGTTGGAGATCTGAAGAACGCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTCCAGTCGCCTTCATCTaGCAGGCAGACACTTCCCCG +
Preference number: 4 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTPVAFI*QADTSP
Trigger: CGGGGAAGTGTCTGCCTGTCAGATGAAGGCGACTGG...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTTCATCTCGTACAATGTaGCCCCCAGGGCAAAGTAGT +
Preference number: 4 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLSSRTM*PPGQSS
Trigger: ACTACTTTGCCCTGGGGGTCACATTGTACGAGATGA...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR GCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGACCCTTGGTCTTATTCTaGCCTTCCTTCAGCTCCACA +
Preference number: 4 (lower is better)
Translates to: APFVWPLVTALASQAQLRPLVLF*PSFSST
Trigger: TGTGGAGCTGAAGGAAGGGCAGAATAAGACCAAGGG...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR GCA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGATCCTTCTCCAACAGCTaGTCACAGAAGTCCTTGCTG +
Preference number: 4 (lower is better)
Translates to: APFVWPLVTALASQAQLRSFSNS*SQKSLL
Trigger: CAGCAAGGACTTCTGTGAGCAGCTGTTGGAGAAGGA...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTCTCACACTTGGACAGTaGGGGCAACCGGAGCTTGGC +
Preference number: 4 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTLTLGQ*GQPELG
Trigger: GCCAAGCTCCGGTTGCCCCCACTGTCCAAGTGTGAG...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGGGCTTGTGCCTTCTGTaGCCTCAGGTCATCATCAGC +
Preference number: 4 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLGLCLL*PQVIIS
Trigger: GCTGATGATGACCTGAGGCCACAGAAGGCACAAGCC...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp ACTGGTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTGGCTGACAGAGGTCCGTCTTaGTCTCGAACGCATAGGCCA +
Preference number: 4 (lower is better)
Translates to: TGDQDTSQPTSHRAPKLADRGPS*SRTHRP
Trigger: TGGCCTATGCGTTCGAGACCAAGACGGACCTCTGTC...AGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCACCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGCTCGGAAGGGTCCTCTaGCTGCGATCATCTCGTACA +
Preference number: 4 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLLGRVL*LRSSRT
Trigger: TGTACGAGATGATCGCAGCCAGAGGACCCTTCCGAG...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTTCAGCCGTTTCTTGTTaGGCTTCTTGCAGGCATACA +
Preference number: 4 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLSAVSC*ASCRHT
Trigger: TGTATGCCTGCAAGAAGCTCAACAAGAAACGGCTGA...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTCTGCCTCCTCCGTGGTaGTTCCCTTCATGTCATCCG +
Preference number: 4 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTLPPPW*FPSCHP
Trigger: CGGATGACATGAAGGGAATCACCACGGAGGAGGCAG...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTGGTACTCAGCCAGGATaGCTTGTGCCTTCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTGTQPG*LVPSVA
Trigger: GGCCACAGAAGGCACAAGCCATCCTGGCTGAGTACC...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACTGCTCCATTGTGGCCTaGAGCAAAGGCTGGAAGAGG +
Preference number: 4 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNCSIVA*SKGWKR
Trigger: CCTCTTCCAGCCTTTGCTCCAGGCCACAATGGAGCA...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGTCCCTGCGTAGCCCTTaGTCTTATTCTGCCCTTCCT +
Preference number: 4 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLSLRSP*SYSALP
Trigger: AGGAAGGGCAGAATAAGACCAAGGGCTACGCAGGGA...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp ACTGGTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTGGCTTCCCTGCGTAGCCCTTaGTCTTATTCTGCCCTTCCT +
Preference number: 4 (lower is better)
Translates to: TGDQDTSQPTSHRAPKLASLRSP*SYSALP
Trigger: AGGAAGGGCAGAATAAGACCAAGGGCTACGCAGGGA...AGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCACCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp ACTGGTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTGGCTAAGTCCTTGCTGGCCTaGCTGAACTTCTCTGGGTAC +
Preference number: 4 (lower is better)
Translates to: TGDQDTSQPTSHRAPKLAKSLLA*LNFSGY
Trigger: GTACCCAGAGAAGTTCAGCCAGGCCAGCAAGGACTT...AGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCACCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp GAGACCGTAGCTGCCAGAGGTAGCTGTCTCTGCTTCTaGAGAGAGGCCCTTCCATCCTTTCCATTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: ETVAARGSCLCF*REALPSFPFSK
Trigger: TTTAGAGAATGGAAAGGATGGAAGGGCCTCTCTCAAGAAGCAGAGACAGCTACCTCTGGCAGCTACGGTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp TCAACGCGTTCTTCAGATCTCCAACTCCTTCCAGCTTaGTTGACTACACACACTTCTCCCTTGTGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: STRSSDLQLLPA*LTTHTSPLWAG
Trigger: GCCAGCCCACAAGGGAGAAGTGTGTGTAGTCAACAAAGCTGGAAGGAGTTGGAGATCTGAAGAACGCGTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGAGATGGCCCGTGGTTCTaGGAAGCCGGGGTTATCCTC +
Preference number: 4 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGDGPWF*EAGVIL
Trigger: GAGGATAACCCCGGCTTCTCAGAACCACGGGCCATC...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACGCACATTCTCTGGCTTaGGGTCACGGTAGACAATGC +
Preference number: 4 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNAHSLA*GHGRQC
Trigger: GCATTGTCTACCGTGACCTCAAGCCAGAGAATGTGC...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTCCTTGCTGGCCTGGCTaGACTTCTCTGGGTACTTCA +
Preference number: 4 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTPCWPG*TSLGTS
Trigger: TGAAGTACCCAGAGAAGTTCAGCCAGGCCAGCAAGG...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR GCA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACAGTTGCAGAAGAGTGTaGCCTGTGGGTCCAGGTACT +
Preference number: 4 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNSCRRV*PVGPGT
Trigger: AGTACCTGGACCCACAGGGCACACTCTTCTGCAACT...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR GCA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGCCCTTGGTCTTATTCTaGCCTTCCTTCAGCTCCACA +
Preference number: 4 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLPLVLF*PSFSST
Trigger: TGTGGAGCTGAAGGAAGGGCAGAATAAGACCAAGGG...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR GCA 90 bp ACTGGTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTGGCTGAAGGGTCCTCTGGCTaGGATCATCTCGTACAATGT +
Preference number: 4 (lower is better)
Translates to: TGDQDTSQPTSHRAPKLAEGSSG*DHLVQC
Trigger: ACATTGTACGAGATGATCGCAGCCAGAGGACCCTTC...AGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCACCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR GCA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACATCCCGGCTTCGAGCTaGCTCCAGCTGATATCTTTG +
Preference number: 4 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNIPASS*LQLISL
Trigger: CAAAGATATCAGCTGGAGGCAGCTCGAAGCCGGGAT...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTGGCTTGTGCCTTCTGTaGCCTCAGGTCATCATCAGC +
Preference number: 4 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTGLCLL*PQVIIS
Trigger: GCTGATGATGACCTGAGGCCACAGAAGGCACAAGCC...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTGTCCTGGCTCCCAGTTaGCCCTTCTTTCACCCTTGT +
Preference number: 4 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTVLAPS*PFFHPC
Trigger: ACAAGGGTGAAAGAAGGGCCAACTGGGAGCCAGGAC...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGATGGAAGAGGCCGTCCTaGCTCCCAGTTGGCCCTTCT +
Preference number: 4 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGWKRPS*LPVGPS
Trigger: AGAAGGGCCAACTGGGAGCCAGGACGGCCTCTTCCA...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACTCTTCACCTATGGGCTaGGCTTCCAACCACTTCCAC +
Preference number: 4 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNSSPMG*ASNHFH
Trigger: GTGGAAGTGGTTGGAAGCCCAGCCCATAGGTGAAGA...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTCTCGGAAGGGTCCTCTaGCTGCGATCATCTCGTACA +
Preference number: 4 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTLGRVL*LRSSRT
Trigger: TGTACGAGATGATCGCAGCCAGAGGACCCTTCCGAG...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTCCTTTCCCAGGACCCTaGAGTCCAAGAACCAGTCTT +
Preference number: 4 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTPFPGP*SPRTSL
Trigger: AAGACTGGTTCTTGGACTTCAGGGTCCTGGGAAAGG...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTCGTCACCTCCGTTCATaGTGGTCATCACCAGACAGA +
Preference number: 4 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTRHLRS*WSSPDR
Trigger: TCTGTCTGGTGATGACCATCATGAACGGAGGTGACG...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGACTGCCTCCTCCGTGGTaGTTCCCTTCATGTCATCCG +
Preference number: 4 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGLPPPW*FPSCHP
Trigger: CGGATGACATGAAGGGAATCACCACGGAGGAGGCAG...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCGCCTGGAGCAAAGGCTaGAAGAGGCCGTCCTGGCTC +
Preference number: 4 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLAWSKG*KRPSWL
Trigger: GAGCCAGGACGGCCTCTTCCAGCCTTTGCTCCAGGC...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTTCAAGTGCTCCATTGTaGCCTGGAGCAAAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTSSAPL*PGAKAG
Trigger: TCCAGCCTTTGCTCCAGGCCACAATGGAGCACTTGA...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTACCAGTCTTCACCTATaGGCTGGGCTTCCAACCACT +
Preference number: 4 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTTSLHL*AGLPTT
Trigger: AGTGGTTGGAAGCCCAGCCCATAGGTGAAGACTGGT...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp ACTGGACTATCTTGCTCTTTTATCTACAGTGCAGGGTaGGGGAACCTGACTCTGAGCCTATGTAGTCACCAG +
Preference number: 4 (lower is better)
Translates to: TGLSCSFIYSAG*GNLTLSLCSHQ
Trigger: CTGGTGACTACATAGGCTCAGAGTCAGGTTCCCCAACCCTGCACTGTAGATAAAAGAGCAAGATAGTCCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp GATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTaGGCTTCCAGTCCTAGGGATAACTCCCCATGTTCA +
Preference number: 4 (lower is better)
Translates to: DTSQPTSHRAPK*ASSPRDNSPCS
Trigger: TGAACATGGGGAGTTATCCCTAGGACTGGAAGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCCCAGTCGCCTTCATCTaGCAGGCAGACACTTCCCCG +
Preference number: 4 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLPVAFI*QADTSP
Trigger: CGGGGAAGTGTCTGCCTGTCAGATGAAGGCGACTGG...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR GCA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTTCTGAGATGATACGTTaGTTAAGCTCCTTGTTCTCT +
Preference number: 4 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLSEMIR*LSSLFS
Trigger: AGAGAACAAGGAGCTTAAGCAACGTATCATCTCAGA...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGAGACAGAGGTCCGTCTTaGTCTCGAACGCATAGGCCA +
Preference number: 4 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGDRGPS*SRTHRP
Trigger: TGGCCTATGCGTTCGAGACCAAGACGGACCTCTGTC...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCGCCGATGGGTTGCTCTaGGCACAGGCTCTCAAACTC +
Preference number: 4 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLADGLL*AQALKL
Trigger: GAGTTTGAGAGCCTGTGCTCAGAGCAACCCATCGGC...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGACCTTTCCCAGGACCCTaGAGTCCAAGAACCAGTCTT +
Preference number: 4 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGPFPGP*SPRTSL
Trigger: AAGACTGGTTCTTGGACTTCAGGGTCCTGGGAAAGG...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTTCAGCCGTTTCTTGTTaGGCTTCTTGCAGGCATACA +
Preference number: 4 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTSAVSC*ASCRHT
Trigger: TGTATGCCTGCAAGAAGCTCAACAAGAAACGGCTGA...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGACGTCACCTCCGTTCATaGTGGTCATCACCAGACAGA +
Preference number: 4 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGRHLRS*WSSPDR
Trigger: TCTGTCTGGTGATGACCATCATGAACGGAGGTGACG...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTGACAGTCCTAGAGTCTaGGATGAATGGAGGAATGAG +
Preference number: 4 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTDSPRV*DEWRNE
Trigger: CTCATTCCTCCATTCATCCCAGACTCTAGGACTGTC...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp GAATGCTTAGTCTCCAAGACCACTTGTGACATGACTTaGAATTTGGGAAGAGCTCCAAGGCCTGCTGGAGAA +
Preference number: 4 (lower is better)
Translates to: ECLVSKTTCDMT*NLGRAPRPAGE
Trigger: TTCTCCAGCAGGCCTTGGAGCTCTTCCCAAATTCAAAGTCATGTCACAAGTGGTCTTGGAGACTAAGCATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp GAGGATTTCATGTATCCTTGTATCTTTCTTGTATCCTaGACCCTAAAGCCAAACCGTGCGGCAGAAGCTGCC +
Preference number: 4 (lower is better)
Translates to: EDFMYPCIFLVS*TLKPNRAAEAA
Trigger: GGCAGCTTCTGCCGCACGGTTTGGCTTTAGGGTCAAGGATACAAGAAAGATACAAGGATACATGAAATCCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCGTCCTGGCTCCCAGTTaGCCCTTCTTTCACCCTTGT +
Preference number: 4 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLVLAPS*PFFHPC
Trigger: ACAAGGGTGAAAGAAGGGCCAACTGGGAGCCAGGAC...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp CCTGAAATATTAAGTCCAAGTACCAGGAGATTGACATaGAATGTGAGTCTGATCACCAAGCTCCTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: PEILSPSTRRLT*NVSLITKLLAW
Trigger: CCAGGCCAGGAGCTTGGTGATCAGACTCACATTCAATGTCAATCTCCTGGTACTTGGACTTAATATTTCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp TTGTGCCCCATACAATTTAGGGACACTGGTCCAGTGTaGTGTTCCAGTATTGGCTTCATCCAGCAATCTTTC +
Preference number: 4 (lower is better)
Translates to: LCPIQFRDTGPV*CSSIGFIQQSF
Trigger: GAAAGATTGCTGGATGAAGCCAATACTGGAACACAACACTGGACCAGTGTCCCTAAATTGTATGGGGCACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp CCACCACTACCCACACTACCTCACTGGAGGTACAACTaGCAAAACATAGACTTTCAGGAAAGCACTAAACCT +
Preference number: 4 (lower is better)
Translates to: PPLPTLPHWRYN*QNIDFQESTKP
Trigger: AGGTTTAGTGCTTTCCTGAAAGTCTATGTTTTGCAAGTTGTACCTCCAGTGAGGTAGTGTGGGTAGTGGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp AGGCCACTTACTAATATTCTTCTCCTCTGGAAGCTCTaGACCTGGGAATCAGAATCTAGATTGCCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: RPLTNILLLWKL*TWESESRLPSA
Trigger: TGCTGAGGGCAATCTAGATTCTGATTCCCAGGTCAAGAGCTTCCAGAGGAGAAGAATATTAGTAAGTGGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCGCACATTCTCTGGCTTaGGGTCACGGTAGACAATGC +
Preference number: 4 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLAHSLA*GHGRQC
Trigger: GCATTGTCTACCGTGACCTCAAGCCAGAGAATGTGC...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR GCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCATCCCGGCTTCGAGCTaGCTCCAGCTGATATCTTTG +
Preference number: 4 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLIPASS*LQLISL
Trigger: CAAAGATATCAGCTGGAGGCAGCTCGAAGCCGGGAT...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCTCTTCACCTATGGGCTaGGCTTCCAACCACTTCCAC +
Preference number: 4 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLSSPMG*ASNHFH
Trigger: GTGGAAGTGGTTGGAAGCCCAGCCCATAGGTGAAGA...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp GTCTGCCCTGAAATATTAAGTCCAAGTACCAGGAGATaGACATTGAATGTGAGTCTGATCACCAAGCTCCTG +
Preference number: 4 (lower is better)
Translates to: VCPEILSPSTRR*TLNVSLITKLL
Trigger: CAGGAGCTTGGTGATCAGACTCACATTCAATGTCAATCTCCTGGTACTTGGACTTAATATTTCAGGGCAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCTCATCTCGTACAATGTaGCCCCCAGGGCAAAGTAGT +
Preference number: 4 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLSSRTM*PPGQSS
Trigger: ACTACTTTGCCCTGGGGGTCACATTGTACGAGATGA...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR GCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCTCCTTCTCCAACAGCTaGTCACAGAAGTCCTTGCTG +
Preference number: 4 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLSFSNS*SQKSLL
Trigger: CAGCAAGGACTTCTGTGAGCAGCTGTTGGAGAAGGA...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCCTTGTCACCATGCCCTaGTCCAGAAAGTTGCAGAAG +
Preference number: 4 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLLVTMP*SRKLQK
Trigger: CTTCTGCAACTTTCTGGACCAGGGCATGGTGACAAG...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp TTGATGCACGCCTTGCCTCAGTGGCTTCCCTTAATTTaGGAGGAGGATTTCATGTATCCTTGTATCTTTCTT +
Preference number: 4 (lower is better)
Translates to: LMHALPQWLPLI*EEDFMYPCIFL
Trigger: AAGAAAGATACAAGGATACATGAAATCCTCCTCCAAAATTAAGGGAAGCCACTGAGGCAAGGCGTGCATCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR TCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCTCCAACCACTTCCACTaGAGAAACCGCAGGAAATAC +
Preference number: 4 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLSNHFH*RNRRKY
Trigger: GTATTTCCTGCGGTTTCTTCAGTGGAAGTGGTTGGA...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CCA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCGACAGTCCTAGAGTCTaGGATGAATGGAGGAATGAG +
Preference number: 4 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLDSPRV*DEWRNE
Trigger: CTCATTCCTCCATTCATCCCAGACTCTAGGACTGTC...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp GAACAACATTATGAACTAACCAGTACCCCGGAGCTCTaGACTCTAGCTGCATATATATCAAAAGATGGCCTA +
Preference number: 4 (lower is better)
Translates to: EQHYELTSTPEL*TLAAYISKDGL
Trigger: TAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp AATTTAGGGACACTGGTCCAGTGTTGTGTTCCAGTATaGGCTTCATCCAGCAATCTTTCAAAAATTTGGGGT +
Preference number: 4 (lower is better)
Translates to: NLGTLVQCCVPV*ASSSNLSKIWG
Trigger: ACCCCAAATTTTTGAAAGATTGCTGGATGAAGCCAATACTGGAACACAACACTGGACCAGTGTCCCTAAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp AATACAGCTGGCCTGGGTTTTATTGATGACATATTCTaGACAGTTGCTTGTGCCCCATACAATTTAGGGACA +
Preference number: 4 (lower is better)
Translates to: NTAGLGFIDDIF*TVACAPYNLGT
Trigger: TGTCCCTAAATTGTATGGGGCACAAGCAACTGTCAAGAATATGTCATCAATAAAACCCAGGCCAGCTGTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR GCA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGATCTGAGATGATACGTTaGTTAAGCTCCTTGTTCTCT +
Preference number: 4 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGSEMIR*LSSLFS
Trigger: AGAGAACAAGGAGCTTAAGCAACGTATCATCTCAGA...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
3UTR CAA 72 bp GCTTCCCTTAATTTTGGAGGAGGATTTCATGTATCCTaGTATCTTTCTTGTATCCTTGACCCTAAAGCCAAA +
Preference number: 4 (lower is better)
Translates to: ASLNFGGGFHVS*YLSCILDPKAK
Trigger: TTTGGCTTTAGGGTCAAGGATACAAGAAAGATACAAGGATACATGAAATCCTCCTCCAAAATTAAGGGAAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 90 bp AGGTACTCCTGGAAGGGCGCCTGGCTCAAGTGCTCCATTGTGGCCTaGAGCAAAGGCTGGAAGAGGCCGTCCTGGCTCCCAGTTGGCCCT +
Preference number: 5 (lower is better)
Translates to: RYSWKGAWLKCSIVA*SKGWKRPSWLPVGP
Trigger: AGGGCCAACTGGGAGCCAGGACGGCCTCTTCCAGCCTTTGCTCCAGGCCACAATGGAGCACTTGAGCCAGGCGCCCTTCCAGGAGTACCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS TCA 90 bp GGGAAGACGGTGTGCTGCTTCCGTCAAAACTGCCCCGGGCAGCGATaGAGGCAGAGTTGGCCACCACGGTCTCCAAGGACCCGAAATCCA +
Preference number: 5 (lower is better)
Translates to: GKTVCCFRQNCPGQR*RQSWPPRSPRTRNP
Trigger: TGGATTTCGGGTCCTTGGAGACCGTGGTGGCCAACTCTGCCTTCATCGCTGCCCGGGGCAGTTTTGACGGAAGCAGCACACCGTCTTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS GCA 90 bp CCATCCCGGAAGCCCAGGCGCTTCTCCGGGTCCTTCTCCAACAGCTaGTCACAGAAGTCCTTGCTGGCCTGGCTGAACTTCTCTGGGTAC +
Preference number: 5 (lower is better)
Translates to: PSRKPRRFSGSFSNS*SQKSLLAWLNFSGY
Trigger: GTACCCAGAGAAGTTCAGCCAGGCCAGCAAGGACTTCTGTGAGCAGCTGTTGGAGAAGGACCCGGAGAAGCGCCTGGGCTTCCGGGATGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 90 bp AAGGGCGCCTGGCTCAAGTGCTCCATTGTGGCCTGGAGCAAAGGCTaGAAGAGGCCGTCCTGGCTCCCAGTTGGCCCTTCTTTCACCCTT +
Preference number: 5 (lower is better)
Translates to: KGAWLKCSIVAWSKG*KRPSWLPVGPSFTL
Trigger: AAGGGTGAAAGAAGGGCCAACTGGGAGCCAGGACGGCCTCTTCCAGCCTTTGCTCCAGGCCACAATGGAGCACTTGAGCCAGGCGCCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS TCA 90 bp GGGGCTGCCTCCTCCGTGGTGATTCCCTTCATGTCATCCGGCATCTaGCCATCTGCGCGCCACACATTTAGGTCCCCAAAGAGCCCAGTC +
Preference number: 5 (lower is better)
Translates to: GAASSVVIPFMSSGI*PSARHTFRSPKSPV
Trigger: GACTGGGCTCTTTGGGGACCTAAATGTGTGGCGCGCAGATGGTCAGATGCCGGATGACATGAAGGGAATCACCACGGAGGAGGCAGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 90 bp TTTCTAGGTACTCCTGGAAGGGCGCCTGGCTCAAGTGCTCCATTGTaGCCTGGAGCAAAGGCTGGAAGAGGCCGTCCTGGCTCCCAGTTG +
Preference number: 5 (lower is better)
Translates to: FLGTPGRAPGSSAPL*PGAKAGRGRPGSQL
Trigger: CAACTGGGAGCCAGGACGGCCTCTTCCAGCCTTTGCTCCAGGCCACAATGGAGCACTTGAGCCAGGCGCCCTTCCAGGAGTACCTAGAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 90 bp TGTGGCCTGGAGCAAAGGCTGGAAGAGGCCGTCCTGGCTCCCAGTTaGCCCTTCTTTCACCCTTGTCACCATGCCCTGGTCCAGAAAGTT +
Preference number: 5 (lower is better)
Translates to: CGLEQRLEEAVLAPS*PFFHPCHHALVQKV
Trigger: AACTTTCTGGACCAGGGCATGGTGACAAGGGTGAAAGAAGGGCCAACTGGGAGCCAGGACGGCCTCTTCCAGCCTTTGCTCCAGGCCACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS TCA 90 bp TCTTGCCGATGGGTTGCTCTGAGCACAGGCTCTCAAACTCCAAGCTaGGGTTGTCACGGAGACCCTCACACTTGGACAGTGGGGGCAACC +
Preference number: 5 (lower is better)
Translates to: SCRWVALSTGSQTPS*GCHGDPHTWTVGAT
Trigger: GGTTGCCCCCACTGTCCAAGTGTGAGGGTCTCCGTGACAACCTCAGCTTGGAGTTTGAGAGCCTGTGCTCAGAGCAACCCATCGGCAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 90 bp TGTCACGGAGACCCTCACACTTGGACAGTGGGGGCAACCGGAGCTTaGCCAGATATTTCTTGTCTCGGGAAGACGGTGTGCTGCTTCCGT +
Preference number: 5 (lower is better)
Translates to: CHGDPHTWTVGATGA*PDISCLGKTVCCFR
Trigger: ACGGAAGCAGCACACCGTCTTCCCGAGACAAGAAATATCTGGCCAAGCTCCGGTTGCCCCCACTGTCCAAGTGTGAGGGTCTCCGTGACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 90 bp TGTCACCATGCCCTGGTCCAGAAAGTTGCAGAAGAGTGTGCCCTGTaGGTCCAGGTACTCAGCCAGGATGGCTTGTGCCTTCTGTGGCCT +
Preference number: 5 (lower is better)
Translates to: CHHALVQKVAEECAL*VQVLSQDGLCLLWP
Trigger: AGGCCACAGAAGGCACAAGCCATCCTGGCTGAGTACCTGGACCCACAGGGCACACTCTTCTGCAACTTTCTGGACCAGGGCATGGTGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS GCA 90 bp TCACCCTTGTCACCATGCCCTGGTCCAGAAAGTTGCAGAAGAGTGTaGCCTGTGGGTCCAGGTACTCAGCCAGGATGGCTTGTGCCTTCT +
Preference number: 5 (lower is better)
Translates to: SPLSPCPGPESCRRV*PVGPGTQPGWLVPS
Trigger: AGAAGGCACAAGCCATCCTGGCTGAGTACCTGGACCCACAGGGCACACTCTTCTGCAACTTTCTGGACCAGGGCATGGTGACAAGGGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS GCA 90 bp CTTGTTCTCTACCTTCTCTCCTCGGGCTCGGAAGGGTCCTCTGGCTaGGATCATCTCGTACAATGTGACCCCCAGGGCAAAGTAGTCCAC +
Preference number: 5 (lower is better)
Translates to: LVLYLLSSGSEGSSG*DHLVQCDPQGKVVH
Trigger: GTGGACTACTTTGCCCTGGGGGTCACATTGTACGAGATGATCGCAGCCAGAGGACCCTTCCGAGCCCGAGGAGAGAAGGTAGAGAACAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 90 bp GGTCCCCAAAGAGCCCAGTCTCGATCATCTCCTCCTGCCAGGGAATaGAGCAGTTGCCAGAGGCGAATTCTTGGAAGAACTCTGTGTCCG +
Preference number: 5 (lower is better)
Translates to: GPQRAQSRSSPPARE*SSCQRRILGRTLCP
Trigger: CGGACACAGAGTTCTTCCAAGAATTCGCCTCTGGCAACTGCTCCATTCCCTGGCAGGAGGAGATGATCGAGACTGGGCTCTTTGGGGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CAA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGAGCGATGAAGGCAGAGTaGGCCACCACGGTCTCCAAG +
Preference number: 5 (lower is better)
Translates to: APFVWPLVTALASQAQLRAMKAE*ATTVSK
Trigger: CTTGGAGACCGTGGTGGCCAACTCTGCCTTCATCGC...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS TCA 90 bp CTCGGGCTCGGAAGGGTCCTCTGGCTGCGATCATCTCGTACAATGTaGCCCCCAGGGCAAAGTAGTCCACAGAGAAGTCGTATTCTTCAC +
Preference number: 5 (lower is better)
Translates to: LGLGRVLWLRSSRTM*PPGQSSPQRSRILH
Trigger: GTGAAGAATACGACTTCTCTGTGGACTACTTTGCCCTGGGGGTCACATTGTACGAGATGATCGCAGCCAGAGGACCCTTCCGAGCCCGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 90 bp GCCCTGTGGGTCCAGGTACTCAGCCAGGATGGCTTGTGCCTTCTGTaGCCTCAGGTCATCATCAGCAGTGTCATAGTCCTCAATGTCCTT +
Preference number: 5 (lower is better)
Translates to: ALWVQVLSQDGLCLL*PQVIISSVIVLNVL
Trigger: AAGGACATTGAGGACTATGACACTGCTGATGATGACCTGAGGCCACAGAAGGCACAAGCCATCCTGGCTGAGTACCTGGACCCACAGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 90 bp AACCGCAGGAAATACAAGCTTTCTAGGTACTCCTGGAAGGGCGCCTaGCTCAAGTGCTCCATTGTGGCCTGGAGCAAAGGCTGGAAGAGG +
Preference number: 5 (lower is better)
Translates to: NRRKYKLSRYSWKGA*LKCSIVAWSKGWKR
Trigger: CCTCTTCCAGCCTTTGCTCCAGGCCACAATGGAGCACTTGAGCCAGGCGCCCTTCCAGGAGTACCTAGAAAGCTTGTATTTCCTGCGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 90 bp GGCACCCACGTCCTGAATGTTCTTGGCATAGACAGTCCTAGAGTCTaGGATGAATGGAGGAATGAGCATCCCGGCTTCGAGCTGCCTCCA +
Preference number: 5 (lower is better)
Translates to: GTHVLNVLGIDSPRV*DEWRNEHPGFELPP
Trigger: TGGAGGCAGCTCGAAGCCGGGATGCTCATTCCTCCATTCATCCCAGACTCTAGGACTGTCTATGCCAAGAACATTCAGGACGTGGGTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS GCA 90 bp CTAGAGTCTGGGATGAATGGAGGAATGAGCATCCCGGCTTCGAGCTaGCTCCAGCTGATATCTTTGAAGAGGACGTTTGCCCGAAGCGCA +
Preference number: 5 (lower is better)
Translates to: LESGMNGGMSIPASS*LQLISLKRTFARSA
Trigger: TGCGCTTCGGGCAAACGTCCTCTTCAAAGATATCAGCTGGAGGCAGCTCGAAGCCGGGATGCTCATTCCTCCATTCATCCCAGACTCTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 90 bp AAACTCCAAGCTGAGGTTGTCACGGAGACCCTCACACTTGGACAGTaGGGGCAACCGGAGCTTGGCCAGATATTTCTTGTCTCGGGAAGA +
Preference number: 5 (lower is better)
Translates to: KLQAEVVTETLTLGQ*GQPELGQIFLVSGR
Trigger: TCTTCCCGAGACAAGAAATATCTGGCCAAGCTCCGGTTGCCCCCACTGTCCAAGTGTGAGGGTCTCCGTGACAACCTCAGCTTGGAGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 90 bp AGCTCCAGAGCTGGCACATGTCTCTCGTCTGTCTTCAAGAACTGTTaGAAGAGCCTCTTGCCGATGGGTTGCTCTGAGCACAGGCTCTCA +
Preference number: 5 (lower is better)
Translates to: SSRAGTCLSSVFKNC*KSLLPMGCSEHRLS
Trigger: TGAGAGCCTGTGCTCAGAGCAACCCATCGGCAAGAGGCTCTTCCAACAGTTCTTGAAGACAGACGAGAGACATGTGCCAGCTCTGGAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 90 bp TCCGGGTCCTTCTCCAACAGCTGCTCACAGAAGTCCTTGCTGGCCTaGCTGAACTTCTCTGGGTACTTCACAGGCTCTGAGATGATACGT +
Preference number: 5 (lower is better)
Translates to: SGSFSNSCSQKSLLA*LNFSGYFTGSEMIR
Trigger: ACGTATCATCTCAGAGCCTGTGAAGTACCCAGAGAAGTTCAGCCAGGCCAGCAAGGACTTCTGTGAGCAGCTGTTGGAGAAGGACCCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CAA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTAACTCCAAGCTGAGGTaGTCACGGAGACCCTCACAC +
Preference number: 5 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLNSKLR*SRRPSH
Trigger: GTGTGAGGGTCTCCGTGACAACCTCAGCTTGGAGTT...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS TCA 90 bp TGTCTTCAAGAACTGTTGGAAGAGCCTCTTGCCGATGGGTTGCTCTaGGCACAGGCTCTCAAACTCCAAGCTGAGGTTGTCACGGAGACC +
Preference number: 5 (lower is better)
Translates to: CLQELLEEPLADGLL*AQALKLQAEVVTET
Trigger: GGTCTCCGTGACAACCTCAGCTTGGAGTTTGAGAGCCTGTGCTCAGAGCAACCCATCGGCAAGAGGCTCTTCCAACAGTTCTTGAAGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS GCA 90 bp TCGTCTGTCTTCAAGAACTGTTGGAAGAGCCTCTTGCCGATGGGTTaGTCTGAGCACAGGCTCTCAAACTCCAAGCTGAGGTTGTCACGG +
Preference number: 5 (lower is better)
Translates to: SSVFKNCWKSLLPMG*SEHRLSNSKLRLSR
Trigger: CCGTGACAACCTCAGCTTGGAGTTTGAGAGCCTGTGCTCAGAGCAACCCATCGGCAAGAGGCTCTTCCAACAGTTCTTGAAGACAGACGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS GCA 90 bp AGAGCCCAGTCTCGATCATCTCCTCCTGCCAGGGAATGGAGCAGTTaGCAGAGGCGAATTCTTGGAAGAACTCTGTGTCCGCTTTGTCAA +
Preference number: 5 (lower is better)
Translates to: RAQSRSSPPAREWSS*QRRILGRTLCPLCQ
Trigger: TTGACAAAGCGGACACAGAGTTCTTCCAAGAATTCGCCTCTGGCAACTGCTCCATTCCCTGGCAGGAGGAGATGATCGAGACTGGGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CAA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACGCGATGAAGGCAGAGTaGGCCACCACGGTCTCCAAG +
Preference number: 5 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNAMKAE*ATTVSK
Trigger: CTTGGAGACCGTGGTGGCCAACTCTGCCTTCATCGC...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CAA 90 bp ACTGGTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTGGCTGCCCTTCTTTCACCCTaGTCACCATGCCCTGGTCCA +
Preference number: 5 (lower is better)
Translates to: TGDQDTSQPTSHRAPKLAALLSP*SPCPGP
Trigger: TGGACCAGGGCATGGTGACAAGGGTGAAAGAAGGGC...AGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCACCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CAA 90 bp ACTGGTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTGGCTCCCTGGTCCAGAAAGTaGCAGAAGAGTGTGCCCTGT +
Preference number: 5 (lower is better)
Translates to: TGDQDTSQPTSHRAPKLAPWSRK*QKSVPC
Trigger: ACAGGGCACACTCTTCTGCAACTTTCTGGACCAGGG...AGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCACCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CAA 90 bp TGGGCCTGGCTTGAGCATTTGAAACCCCCAAAGCCCATCCCCAATGACACACTTTCAAAAACCACACCCTaGACTGTGGAAAAGGCACCC +
Preference number: 5 (lower is better)
Translates to: WAWLEHLKPPKPIPNDTLSKTTP*TVEKAP
Trigger: GGGTGCCTTTTCCACAGTCAAGGGTGTGGTTTTTGA...AAGTGTGTCATTGGGGATGGGCTTTGGGGGTTTCAAATGCTCAAGCCAGGCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CAA 90 bp ACTGGTGACCAGGATACAAGTCAACCTACATCTCACAGAGCTCCCAAGTTGGCTGCCAGAGGCGAATTCTaGGAAGAACTCTGTGTCCGC +
Preference number: 5 (lower is better)
Translates to: TGDQDTSQPTSHRAPKLAARGEF*EELCVR
Trigger: GCGGACACAGAGTTCTTCCAAGAATTCGCCTCTGGC...AGCCAACTTGGGAGCTCTGTGAGATGTAGGTTGACTTGTATCCTGGTCACCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CAA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGGCCAGAGGCGAATTCTaGGAAGAACTCTGTGTCCGC +
Preference number: 5 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLARGEF*EELCVR
Trigger: GCGGACACAGAGTTCTTCCAAGAATTCGCCTCTGGC...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS TCA 90 bp CAGGCCACTGATGATCTGTGCTGTGTAATAGATGGCCCGTGGTTCTaGGAAGCCGGGGTTATCCTCATCCACATTGTAGATGTGGTACCT +
Preference number: 5 (lower is better)
Translates to: QATDDLCCVIDGPWF*EAGVILIHIVDVVP
Trigger: AGGTACCACATCTACAATGTGGATGAGGATAACCCCGGCTTCTCAGAACCACGGGCCATCTATTACACAGCACAGATCATCAGTGGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 90 bp ATCTCCTCCTGCCAGGGAATGGAGCAGTTGCCAGAGGCGAATTCTTaGAAGAACTCTGTGTCCGCTTTGTCAAAAACCACACCCTTGACT +
Preference number: 5 (lower is better)
Translates to: ISSCQGMEQLPEANS*KNSVSALSKTTPLT
Trigger: AGTCAAGGGTGTGGTTTTTGACAAAGCGGACACAGAGTTCTTCCAAGAATTCGCCTCTGGCAACTGCTCCATTCCCTGGCAGGAGGAGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CAA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACCCCTGGTCCAGAAAGTaGCAGAAGAGTGTGCCCTGT +
Preference number: 5 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNPWSRK*QKSVPC
Trigger: ACAGGGCACACTCTTCTGCAACTTTCTGGACCAGGG...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CAA 90 bp GCCCCATTTGTTTGGCCTCTAGTGACAGCCTTAGCATCACAGGCTCAGCTGAGATTCAGCCGTTTCTTGTaGAGCTTCTTGCAGGCATAC +
Preference number: 5 (lower is better)
Translates to: APFVWPLVTALASQAQLRFSRFL*SFLQAY
Trigger: GTATGCCTGCAAGAAGCTCAACAAGAAACGGCTGAA...TCTCAGCTGAGCCTGTGATGCTAAGGCTGTCACTAGAGGCCAAACAAATGGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 90 bp ATCAGCAGTGTCATAGTCCTCAATGTCCTTCCAGAGCTCCAGAGCTaGCACATGTCTCTCGTCTGTCTTCAAGAACTGTTGGAAGAGCCT +
Preference number: 5 (lower is better)
Translates to: ISSVIVLNVLPELQS*HMSLVCLQELLEEP
Trigger: AGGCTCTTCCAACAGTTCTTGAAGACAGACGAGAGACATGTGCCAGCTCTGGAGCTCTGGAAGGACATTGAGGACTATGACACTGCTGAT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS TCA 90 bp AAATTCGGATATTGCCATCATTGTCCAATAGCACATTCTCTGGCTTaGGGTCACGGTAGACAATGCGTCTCTGATGCAGGTGCTCCAGGC +
Preference number: 5 (lower is better)
Translates to: KFGYCHHCPIAHSLA*GHGRQCVSDAGAPG
Trigger: GCCTGGAGCACCTGCATCAGAGACGCATTGTCTACCGTGACCTCAAGCCAGAGAATGTGCTATTGGACAATGATGGCAATATCCGAATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CAA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGTTCAGCCGTTTCTTGTaGAGCTTCTTGCAGGCATAC +
Preference number: 5 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLFSRFL*SFLQAY
Trigger: GTATGCCTGCAAGAAGCTCAACAAGAAACGGCTGAA...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CAA 90 bp AATATTGAGCCTATGGGGGCCATTCCTACTCAAACCACCACATTCCACTCCCTGCGTTGCTTAAGCTCCTaGTTCTCTACCTTCTCTCCT +
Preference number: 5 (lower is better)
Translates to: NIEPMGAIPTQTTTFHSLRCLSS*FSTFSP
Trigger: AGGAGAGAAGGTAGAGAACAAGGAGCTTAAGCAACG...CAGGGAGTGGAATGTGGTGGTTTGAGTAGGAATGGCCCCCATAGGCTCAATATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS TCA 90 bp ATTCTTGGAAGAACTCTGTGTCCGCTTTGTCAAAAACCACACCCTTaGCTGTGGAAAAGGCACCCACGTCCTGAATGTTCTTGGCATAGA +
Preference number: 5 (lower is better)
Translates to: ILGRTLCPLCQKPHP*LWKRHPRPECSWHR
Trigger: TCTATGCCAAGAACATTCAGGACGTGGGTGCCTTTTCCACAGTCAAGGGTGTGGTTTTTGACAAAGCGGACACAGAGTTCTTCCAAGAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CAA 90 bp AGATTGCCCTCAGCACCCTGTCTTCCATGTTTCTACGAGTATGGCCCATTAAACTCAGAAATTCGGATATaGCCATCATTGTCCAATAGC +
Preference number: 5 (lower is better)
Translates to: RLPSAPCLPCFYEYGPLNSEIRI*PSLSNS
Trigger: GCTATTGGACAATGATGGCAATATCCGAATTTCTGA...GTTTAATGGGCCATACTCGTAGAAACATGGAAGACAGGGTGCTGAGGGCAATCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CAA 90 bp AAATGCCTCAGCAGGGTAATTTGTGAAAAGGCTTATTTACCCCCACAGTTTGGAAACTCTGTGTCCGCTTaGTCAAAAACCACACCCTTG +
Preference number: 5 (lower is better)
Translates to: KCLSRVICEKAYLPPQFGNSVSA*SKTTPL
Trigger: CAAGGGTGTGGTTTTTGACAAAGCGGACACAGAGTT...TCCAAACTGTGGGGGTAAATAAGCCTTTTCACAAATTACCCTGCTGAGGCATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CAA 90 bp AAACCTTCCTCAAACCATAGCCAGGGACTTGAATGCTTAGTCTCCAAGACCACTTCAGAAATTCGGATATaGCCATCATTGTCCAATAGC +
Preference number: 5 (lower is better)
Translates to: KPSSNHSQGLECLVSKTTSEIRI*PSLSNS
Trigger: GCTATTGGACAATGATGGCAATATCCGAATTTCTGA...AGTGGTCTTGGAGACTAAGCATTCAAGTCCCTGGCTATGGTTTGAGGAAGGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS-3UTR CAA 90 bp GTTTTAACTCTCCTCTGCCAATGCCATCAATCCAAAATGCTTATATTTAGCCTCAACTCTGTGTCCGCTTaGTCAAAAACCACACCCTTG +
Preference number: 5 (lower is better)
Translates to: VLTLLCQCHQSKMLIFSLNSVSA*SKTTPL
Trigger: CAAGGGTGTGGTTTTTGACAAAGCGGACACAGAGTT...GAGGCTAAATATAAGCATTTTGGATTGATGGCATTGGCAGAGGAGAGTTAAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 72 bp TGGAAGGGCGCCTGGCTCAAGTGCTCCATTGTGGCCTaGAGCAAAGGCTGGAAGAGGCCGTCCTGGCTCCCA +
Preference number: 6 (lower is better)
Translates to: WKGAWLKCSIVA*SKGWKRPSWLP
Trigger: TGGGAGCCAGGACGGCCTCTTCCAGCCTTTGCTCCAGGCCACAATGGAGCACTTGAGCCAGGCGCCCTTCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 72 bp ACTCCTGGAAGGGCGCCTGGCTCAAGTGCTCCATTGTaGCCTGGAGCAAAGGCTGGAAGAGGCCGTCCTGGC +
Preference number: 6 (lower is better)
Translates to: TPGRAPGSSAPL*PGAKAGRGRPG
Trigger: GCCAGGACGGCCTCTTCCAGCCTTTGCTCCAGGCCACAATGGAGCACTTGAGCCAGGCGCCCTTCCAGGAGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS TCA 72 bp GTGTGCTGCTTCCGTCAAAACTGCCCCGGGCAGCGATaGAGGCAGAGTTGGCCACCACGGTCTCCAAGGACC +
Preference number: 6 (lower is better)
Translates to: VCCFRQNCPGQR*RQSWPPRSPRT
Trigger: GGTCCTTGGAGACCGTGGTGGCCAACTCTGCCTTCATCGCTGCCCGGGGCAGTTTTGACGGAAGCAGCACAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CAA 72 bp GGTACTCCTGGAAGGGCGCCTGGCTCAAGTGCTCCATaGTGGCCTGGAGCAAAGGCTGGAAGAGGCCGTCCT +
Preference number: 6 (lower is better)
Translates to: GTPGRAPGSSAP*WPGAKAGRGRP
Trigger: AGGACGGCCTCTTCCAGCCTTTGCTCCAGGCCACAATGGAGCACTTGAGCCAGGCGCCCTTCCAGGAGTACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CAA 90 bp AGCTTTCTAGGTACTCCTGGAAGGGCGCCTGGCTCAAGTGCTCCATaGTGGCCTGGAGCAAAGGCTGGAAGAGGCCGTCCTGGCTCCCAG +
Preference number: 6 (lower is better)
Translates to: SFLGTPGRAPGSSAP*WPGAKAGRGRPGSQ
Trigger: CTGGGAGCCAGGACGGCCTCTTCCAGCCTTTGCTCCAGGCCACAATGGAGCACTTGAGCCAGGCGCCCTTCCAGGAGTACCTAGAAAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 72 bp GAGCAAAGGCTGGAAGAGGCCGTCCTGGCTCCCAGTTaGCCCTTCTTTCACCCTTGTCACCATGCCCTGGTC +
Preference number: 6 (lower is better)
Translates to: EQRLEEAVLAPS*PFFHPCHHALV
Trigger: GACCAGGGCATGGTGACAAGGGTGAAAGAAGGGCCAACTGGGAGCCAGGACGGCCTCTTCCAGCCTTTGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 72 bp TGGCTCAAGTGCTCCATTGTGGCCTGGAGCAAAGGCTaGAAGAGGCCGTCCTGGCTCCCAGTTGGCCCTTCT +
Preference number: 6 (lower is better)
Translates to: WLKCSIVAWSKG*KRPSWLPVGPS
Trigger: AGAAGGGCCAACTGGGAGCCAGGACGGCCTCTTCCAGCCTTTGCTCCAGGCCACAATGGAGCACTTGAGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CAA 72 bp GGAGCAAAGGCTGGAAGAGGCCGTCCTGGCTCCCAGTaGGCCCTTCTTTCACCCTTGTCACCATGCCCTGGT +
Preference number: 6 (lower is better)
Translates to: GAKAGRGRPGSQ*ALLSPLSPCPG
Trigger: ACCAGGGCATGGTGACAAGGGTGAAAGAAGGGCCAACTGGGAGCCAGGACGGCCTCTTCCAGCCTTTGCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CAA 90 bp CCGATGGGTTGCTCTGAGCACAGGCTCTCAAACTCCAAGCTGAGGTaGTCACGGAGACCCTCACACTTGGACAGTGGGGGCAACCGGAGC +
Preference number: 6 (lower is better)
Translates to: PMGCSEHRLSNSKLR*SRRPSHLDSGGNRS
Trigger: GCTCCGGTTGCCCCCACTGTCCAAGTGTGAGGGTCTCCGTGACAACCTCAGCTTGGAGTTTGAGAGCCTGTGCTCAGAGCAACCCATCGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CAA 90 bp TTGTCACGGAGACCCTCACACTTGGACAGTGGGGGCAACCGGAGCTaGGCCAGATATTTCTTGTCTCGGGAAGACGGTGTGCTGCTTCCG +
Preference number: 6 (lower is better)
Translates to: LSRRPSHLDSGGNRS*ARYFLSREDGVLLP
Trigger: CGGAAGCAGCACACCGTCTTCCCGAGACAAGAAATATCTGGCCAAGCTCCGGTTGCCCCCACTGTCCAAGTGTGAGGGTCTCCGTGACAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CAA 90 bp AGGCGCTTCTCCGGGTCCTTCTCCAACAGCTGCTCACAGAAGTCCTaGCTGGCCTGGCTGAACTTCTCTGGGTACTTCACAGGCTCTGAG +
Preference number: 6 (lower is better)
Translates to: RRFSGSFSNSCSQKS*LAWLNFSGYFTGSE
Trigger: CTCAGAGCCTGTGAAGTACCCAGAGAAGTTCAGCCAGGCCAGCAAGGACTTCTGTGAGCAGCTGTTGGAGAAGGACCCGGAGAAGCGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS GCA 72 bp CTTTCTAGGTACTCCTGGAAGGGCGCCTGGCTCAAGTaGTCCATTGTGGCCTGGAGCAAAGGCTGGAAGAGG +
Preference number: 6 (lower is better)
Translates to: LSRYSWKGAWLK*SIVAWSKGWKR
Trigger: CCTCTTCCAGCCTTTGCTCCAGGCCACAATGGAGCACTTGAGCCAGGCGCCCTTCCAGGAGTACCTAGAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS GCA 72 bp TACCTTCTCTCCTCGGGCTCGGAAGGGTCCTCTGGCTaGGATCATCTCGTACAATGTGACCCCCAGGGCAAA +
Preference number: 6 (lower is better)
Translates to: YLLSSGSEGSSG*DHLVQCDPQGK
Trigger: TTTGCCCTGGGGGTCACATTGTACGAGATGATCGCAGCCAGAGGACCCTTCCGAGCCCGAGGAGAGAAGGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS GCA 72 bp GGAGATGAGACACATTCCCGACTTGGCTGTAGGGGCTaGCTCCTCCGTGGTGATTCCCTTCATGTCATCCGG +
Preference number: 6 (lower is better)
Translates to: GDETHSRLGCRG*LLRGDSLHVIR
Trigger: CCGGATGACATGAAGGGAATCACCACGGAGGAGGCAGCCCCTACAGCCAAGTCGGGAATGTGTCTCATCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 72 bp GACCCTCACACTTGGACAGTGGGGGCAACCGGAGCTTaGCCAGATATTTCTTGTCTCGGGAAGACGGTGTGC +
Preference number: 6 (lower is better)
Translates to: DPHTWTVGATGA*PDISCLGKTVC
Trigger: GCACACCGTCTTCCCGAGACAAGAAATATCTGGCCAAGCTCCGGTTGCCCCCACTGTCCAAGTGTGAGGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CAA 72 bp GGCCGTCCTGGCTCCCAGTTGGCCCTTCTTTCACCCTaGTCACCATGCCCTGGTCCAGAAAGTTGCAGAAGA +
Preference number: 6 (lower is better)
Translates to: GRPGSQLALLSP*SPCPGPESCRR
Trigger: TCTTCTGCAACTTTCTGGACCAGGGCATGGTGACAAGGGTGAAAGAAGGGCCAACTGGGAGCCAGGACGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS GCA 72 bp TCACCATGCCCTGGTCCAGAAAGTTGCAGAAGAGTGTaGCCTGTGGGTCCAGGTACTCAGCCAGGATGGCTT +
Preference number: 6 (lower is better)
Translates to: SPCPGPESCRRV*PVGPGTQPGWL
Trigger: AAGCCATCCTGGCTGAGTACCTGGACCCACAGGGCACACTCTTCTGCAACTTTCTGGACCAGGGCATGGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS GCA 72 bp GAGCTGCCTCCAGCTGATATCTTTGAAGAGGACGTTTaGCCGAAGCGCATCACAGGTTCCATCCCGGAAGCC +
Preference number: 6 (lower is better)
Translates to: ELPPADIFEEDV*PKRITGSIPEA
Trigger: GGCTTCCGGGATGGAACCTGTGATGCGCTTCGGGCAAACGTCCTCTTCAAAGATATCAGCTGGAGGCAGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CAA 72 bp AGACCCTCACACTTGGACAGTGGGGGCAACCGGAGCTaGGCCAGATATTTCTTGTCTCGGGAAGACGGTGTG +
Preference number: 6 (lower is better)
Translates to: RPSHLDSGGNRS*ARYFLSREDGV
Trigger: CACACCGTCTTCCCGAGACAAGAAATATCTGGCCAAGCTCCGGTTGCCCCCACTGTCCAAGTGTGAGGGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CAA 72 bp AACTCCAAGCTGAGGTTGTCACGGAGACCCTCACACTaGGACAGTGGGGGCAACCGGAGCTTGGCCAGATAT +
Preference number: 6 (lower is better)
Translates to: NSKLRLSRRPSH*DSGGNRSLARY
Trigger: ATATCTGGCCAAGCTCCGGTTGCCCCCACTGTCCAAGTGTGAGGGTCTCCGTGACAACCTCAGCTTGGAGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS TCA 72 bp TCCTCCGTGGTGATTCCCTTCATGTCATCCGGCATCTaGCCATCTGCGCGCCACACATTTAGGTCCCCAAAG +
Preference number: 6 (lower is better)
Translates to: SSVVIPFMSSGI*PSARHTFRSPK
Trigger: CTTTGGGGACCTAAATGTGTGGCGCGCAGATGGTCAGATGCCGGATGACATGAAGGGAATCACCACGGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CAA 72 bp GACAGTGGGGGCAACCGGAGCTTGGCCAGATATTTCTaGTCTCGGGAAGACGGTGTGCTGCTTCCGTCAAAA +
Preference number: 6 (lower is better)
Translates to: DSGGNRSLARYF*SREDGVLLPSK
Trigger: TTTTGACGGAAGCAGCACACCGTCTTCCCGAGACAAGAAATATCTGGCCAAGCTCCGGTTGCCCCCACTGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CAA 90 bp AGGCTCTCAAACTCCAAGCTGAGGTTGTCACGGAGACCCTCACACTaGGACAGTGGGGGCAACCGGAGCTTGGCCAGATATTTCTTGTCT +
Preference number: 6 (lower is better)
Translates to: RLSNSKLRLSRRPSH*DSGGNRSLARYFLS
Trigger: AGACAAGAAATATCTGGCCAAGCTCCGGTTGCCCCCACTGTCCAAGTGTGAGGGTCTCCGTGACAACCTCAGCTTGGAGTTTGAGAGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS TCA 72 bp GAACTGTTGGAAGAGCCTCTTGCCGATGGGTTGCTCTaGGCACAGGCTCTCAAACTCCAAGCTGAGGTTGTC +
Preference number: 6 (lower is better)
Translates to: ELLEEPLADGLL*AQALKLQAEVV
Trigger: GACAACCTCAGCTTGGAGTTTGAGAGCCTGTGCTCAGAGCAACCCATCGGCAAGAGGCTCTTCCAACAGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 72 bp GCTGGCACATGTCTCTCGTCTGTCTTCAAGAACTGTTaGAAGAGCCTCTTGCCGATGGGTTGCTCTGAGCAC +
Preference number: 6 (lower is better)
Translates to: AGTCLSSVFKNC*KSLLPMGCSEH
Trigger: GTGCTCAGAGCAACCCATCGGCAAGAGGCTCTTCCAACAGTTCTTGAAGACAGACGAGAGACATGTGCCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 72 bp AAATACAAGCTTTCTAGGTACTCCTGGAAGGGCGCCTaGCTCAAGTGCTCCATTGTGGCCTGGAGCAAAGGC +
Preference number: 6 (lower is better)
Translates to: KYKLSRYSWKGA*LKCSIVAWSKG
Trigger: GCCTTTGCTCCAGGCCACAATGGAGCACTTGAGCCAGGCGCCCTTCCAGGAGTACCTAGAAAGCTTGTATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 72 bp AGAGCCCAGTCTCGATCATCTCCTCCTGCCAGGGAATaGAGCAGTTGCCAGAGGCGAATTCTTGGAAGAACT +
Preference number: 6 (lower is better)
Translates to: RAQSRSSPPARE*SSCQRRILGRT
Trigger: AGTTCTTCCAAGAATTCGCCTCTGGCAACTGCTCCATTCCCTGGCAGGAGGAGATGATCGAGACTGGGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CAA 72 bp GTCTCGATCATCTCCTCCTGCCAGGGAATGGAGCAGTaGCCAGAGGCGAATTCTTGGAAGAACTCTGTGTCC +
Preference number: 6 (lower is better)
Translates to: VSIISSCQGMEQ*PEANSWKNSVS
Trigger: GGACACAGAGTTCTTCCAAGAATTCGCCTCTGGCAACTGCTCCATTCCCTGGCAGGAGGAGATGATCGAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CAA 90 bp GGCACATGTCTCTCGTCTGTCTTCAAGAACTGTTGGAAGAGCCTCTaGCCGATGGGTTGCTCTGAGCACAGGCTCTCAAACTCCAAGCTG +
Preference number: 6 (lower is better)
Translates to: GTCLSSVFKNCWKSL*PMGCSEHRLSNSKL
Trigger: CAGCTTGGAGTTTGAGAGCCTGTGCTCAGAGCAACCCATCGGCAAGAGGCTCTTCCAACAGTTCTTGAAGACAGACGAGAGACATGTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CAA 90 bp AAGAGCCCAGTCTCGATCATCTCCTCCTGCCAGGGAATGGAGCAGTaGCCAGAGGCGAATTCTTGGAAGAACTCTGTGTCCGCTTTGTCA +
Preference number: 6 (lower is better)
Translates to: KSPVSIISSCQGMEQ*PEANSWKNSVSALS
Trigger: TGACAAAGCGGACACAGAGTTCTTCCAAGAATTCGCCTCTGGCAACTGCTCCATTCCCTGGCAGGAGGAGATGATCGAGACTGGGCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS GCA 72 bp TTCAAGAACTGTTGGAAGAGCCTCTTGCCGATGGGTTaGTCTGAGCACAGGCTCTCAAACTCCAAGCTGAGG +
Preference number: 6 (lower is better)
Translates to: FKNCWKSLLPMG*SEHRLSNSKLR
Trigger: CCTCAGCTTGGAGTTTGAGAGCCTGTGCTCAGAGCAACCCATCGGCAAGAGGCTCTTCCAACAGTTCTTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 72 bp CTGTCTTCAAGAACTGTTGGAAGAGCCTCTTGCCGATaGGTTGCTCTGAGCACAGGCTCTCAAACTCCAAGC +
Preference number: 6 (lower is better)
Translates to: LSSRTVGRASCR*VALSTGSQTPS
Trigger: GCTTGGAGTTTGAGAGCCTGTGCTCAGAGCAACCCATCGGCAAGAGGCTCTTCCAACAGTTCTTGAAGACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CAA 90 bp GAGCAGTTGCCAGAGGCGAATTCTTGGAAGAACTCTGTGTCCGCTTaGTCAAAAACCACACCCTTGACTGTGGAAAAGGCACCCACGTCC +
Preference number: 6 (lower is better)
Translates to: EQLPEANSWKNSVSA*SKTTPLTVEKAPTS
Trigger: GGACGTGGGTGCCTTTTCCACAGTCAAGGGTGTGGTTTTTGACAAAGCGGACACAGAGTTCTTCCAAGAATTCGCCTCTGGCAACTGCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 72 bp GTCCTGAATGTTCTTGGCATAGACAGTCCTAGAGTCTaGGATGAATGGAGGAATGAGCATCCCGGCTTCGAG +
Preference number: 6 (lower is better)
Translates to: VLNVLGIDSPRV*DEWRNEHPGFE
Trigger: CTCGAAGCCGGGATGCTCATTCCTCCATTCATCCCAGACTCTAGGACTGTCTATGCCAAGAACATTCAGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CCA 72 bp TGCCAGGGAATGGAGCAGTTGCCAGAGGCGAATTCTTaGAAGAACTCTGTGTCCGCTTTGTCAAAAACCACA +
Preference number: 6 (lower is better)
Translates to: CQGMEQLPEANS*KNSVSALSKTT
Trigger: TGTGGTTTTTGACAAAGCGGACACAGAGTTCTTCCAAGAATTCGCCTCTGGCAACTGCTCCATTCCCTGGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS TCA 72 bp AGAACTCTGTGTCCGCTTTGTCAAAAACCACACCCTTaGCTGTGGAAAAGGCACCCACGTCCTGAATGTTCT +
Preference number: 6 (lower is better)
Translates to: RTLCPLCQKPHP*LWKRHPRPECS
Trigger: AGAACATTCAGGACGTGGGTGCCTTTTCCACAGTCAAGGGTGTGGTTTTTGACAAAGCGGACACAGAGTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS GCA 72 bp TTCTCTGGGTACTTCACAGGCTCTGAGATGATACGTTaGTTAAGCTCCTTGTTCTCTACCTTCTCTCCTCGG +
Preference number: 6 (lower is better)
Translates to: FSGYFTGSEMIR*LSSLFSTFSPR
Trigger: CCGAGGAGAGAAGGTAGAGAACAAGGAGCTTAAGCAACGTATCATCTCAGAGCCTGTGAAGTACCCAGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS CAA 72 bp CCAGAGGCGAATTCTTGGAAGAACTCTGTGTCCGCTTaGTCAAAAACCACACCCTTGACTGTGGAAAAGGCA +
Preference number: 6 (lower is better)
Translates to: PEANSWKNSVSA*SKTTPLTVEKA
Trigger: TGCCTTTTCCACAGTCAAGGGTGTGGTTTTTGACAAAGCGGACACAGAGTTCTTCCAAGAATTCGCCTCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2
CDS TCA 72 bp TATTGCCATCATTGTCCAATAGCACATTCTCTGGCTTaGGGTCACGGTAGACAATGCGTCTCTGATGCAGGT +
Preference number: 6 (lower is better)
Translates to: YCHHCPIAHSLA*GHGRQCVSDAG
Trigger: ACCTGCATCAGAGACGCATTGTCTACCGTGACCTCAAGCCAGAGAATGTGCTATTGGACAATGATGGCAATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033827.8
ENSMUST00000209909.2