Pregenerated sensors for GRINA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022564Ensembl transcript IDs: ENSMUST00000023225.8, ENSMUST00000229772.2, ENSMUST00000230347.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACACGGGTACTCTATGCCAGGGGAGCCGGGACAGAAGGGAAGACGTaGACCCTCACCTCTTGGTATGATCCTTCTCCCCTGAGACCTGGT | + |
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Preference number: 1 (lower is better) Translates to: TRVLYARGAGTEGKT*TLTSWYDPSPLRPG Trigger: ACCAGGTCTCAGGGGAGAAGGATCATACCAAGAGGTGAGGGTGCACGTCTTCCCTTCTGTCCCGGCTCCCCTGGCATAGAGTACCCGTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| 3UTR-3UTR GCA 90 bp | GACATCCTCTCTGCTCTTGGGGCCCAGCGCAAGAATGAGACCCCGCCCTGCGTGAAGGTGGCACAGAAATaGAGCCCTGTCGCCCCTTGG | + |
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Preference number: 2 (lower is better) Translates to: DILSALGAQRKNETPPCVKVAQK*SPVAPW Trigger: CCAAGGGGCGACAGGGCTGCATTTCTGTGCCACCTT...CACGCAGGGCGGGGTCTCATTCTTGCGCTGGGCCCCAAGAGCAGAGAGGATGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| 3UTR-3UTR CCA 90 bp | GACATCCTCTCTGCTCTTGGGGCCCAGCGCAAGAATGAGACCCCGCCCTGCGTGAGAGGGAAGCACAGATaGCATTGTCATGCCAGGGGC | + |
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Preference number: 2 (lower is better) Translates to: DILSALGAQRKNETPPCVRGKHR*HCHARG Trigger: GCCCCTGGCATGACAATGCCATCTGTGCTTCCCTCT...CACGCAGGGCGGGGTCTCATTCTTGCGCTGGGCCCCAAGAGCAGAGAGGATGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| 3UTR CAA 90 bp | AAAGGGGGCCATGCTGTGGCCATAGAGGGTCCAGACGTTAAGTATTaGCAGTGTACATACAAGAGGGCGAGAGGGACTCCCTCTGCACCA | + |
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Preference number: 2 (lower is better) Translates to: KGGHAVAIEGPDVKY*QCTYKRARGTPSAP Trigger: TGGTGCAGAGGGAGTCCCTCTCGCCCTCTTGTATGTACACTGCAAATACTTAACGTCTGGACCCTCTATGGCCACAGCATGGCCCCCTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| 3UTR-3UTR TCA 90 bp | CCCTTTTATTGGCATTTTAACAATGGCAGCACGAGAGAGCCTCCTCCCTTGAAAGGGCTCATGCAACAGTaGGTGGACAGAAGGTGGCAC | + |
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Preference number: 2 (lower is better) Translates to: PFYWHFNNGSTREPPPLKGLMQQ*VDRRWH Trigger: GTGCCACCTTCTGTCCACTCACTGTTGCATGAGCCC...TTTCAAGGGAGGAGGCTCTCTCGTGCTGCCATTGTTAAAATGCCAATAAAAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| 3UTR TCA 72 bp | CGTGCACCCTCACCTCTTGGTATGATCCTTCTCCCCTaGGACCTGGTGTTGGTCCCTGACCCTGGGATGGGG | + |
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Preference number: 3 (lower is better) Translates to: RAPSPLGMILLP*DLVLVPDPGMG Trigger: CCCCATCCCAGGGTCAGGGACCAACACCAGGTCTCAGGGGAGAAGGATCATACCAAGAGGTGAGGGTGCACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| 3UTR GCA 72 bp | GGGACCAGAGAGAGGGAAGCACAGATGGCATTGTCATaGCAGGGGCATGGGTCTGAGCCAACCATGCCACCT | + |
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Preference number: 3 (lower is better) Translates to: GTREREAQMALS*QGHGSEPTMPP Trigger: AGGTGGCATGGTTGGCTCAGACCCATGCCCCTGGCATGACAATGCCATCTGTGCTTCCCTCTCTCTGGTCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| 3UTR CCA 72 bp | GCCGGGACAGAAGGGAAGACGTGCACCCTCACCTCTTaGTATGATCCTTCTCCCCTGAGACCTGGTGTTGGT | + |
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Preference number: 3 (lower is better) Translates to: AGTEGKTCTLTS*YDPSPLRPGVG Trigger: ACCAACACCAGGTCTCAGGGGAGAAGGATCATACCAAGAGGTGAGGGTGCACGTCTTCCCTTCTGTCCCGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| 3UTR TCA 72 bp | CAATGGCAGCACGAGAGAGCCTCCTCCCTTGAAACATaGCATCCTCTCTGCTCTTGGGGCCCAGCGCAAGAA | + |
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Preference number: 3 (lower is better) Translates to: QWQHERASSLET*HPLCSWGPAQE Trigger: TTCTTGCGCTGGGCCCCAAGAGCAGAGAGGATGTCATGTTTCAAGGGAGGAGGCTCTCTCGTGCTGCCATTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR TCA 90 bp | ATTTGCAGTGTACATACAAGAGGGCGAGAGGGACTCCCTCTGCACCAGGCCAGGCTGCCAGGAAGCAGGTaGAGAGCAGAGCGCCCAGCG | + |
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Preference number: 4 (lower is better) Translates to: ICSVHTRGREGLPLHQARLPGSR*RAERPA Trigger: CGCTGGGCGCTCTGCTCTTCACCTGCTTCCTGGCAG...CCTGGCCTGGTGCAGAGGGAGTCCCTCTCGCCCTCTTGTATGTACACTGCAAAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR TCA 90 bp | AGAGAGAGGGAAGCACAGATGGCATTGTCATGCCAGGGGCATGGGTCTGAGCCAGTTCCCATGCTGAGGTaGGCCAGGGTCCTGGAAGGG | + |
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Preference number: 4 (lower is better) Translates to: REREAQMALSCQGHGSEPVPMLR*ARVLEG Trigger: CCCTTCCAGGACCCTGGCTCACCTCAGCATGGGAAC...TGGCTCAGACCCATGCCCCTGGCATGACAATGCCATCTGTGCTTCCCTCTCTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR CCA 90 bp | AGGGAAGCACAGATGGCATTGTCATGCCAGGGGCATGGGTCTGAGCCAACCATGGGTGAGCCAGGGTCCTaGAAGGGTGGTGGCTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: REAQMALSCQGHGSEPTMGEPGS*KGGGCP Trigger: TGGACAGCCACCACCCTTCCAGGACCCTGGCTCACC...CATGGTTGGCTCAGACCCATGCCCCTGGCATGACAATGCCATCTGTGCTTCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR TCA 90 bp | TCCTTCTCCCCTGAGACCTGGTGTTGGTCCCTGACCCTGGGATGGGGCTGGCAGAGAGGATGGCGAAGATaGAGAGCACCACAACACTCA | + |
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Preference number: 4 (lower is better) Translates to: SFSPETWCWSLTLGWGWQRGWRR*RAPQHS Trigger: TGAGTGTTGTGGTGCTCTTCATCTTCGCCATCCTCT...CTGCCAGCCCCATCCCAGGGTCAGGGACCAACACCAGGTCTCAGGGGAGAAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR TCA 90 bp | GGGAAGCACAGATGGCATTGTCATGCCAGGGGCATGGGTCTGAGCCAACCATGCGGATGCGGTTCCGGATaGAGATGCAGAGGATGGCGA | + |
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Preference number: 4 (lower is better) Translates to: GKHRWHCHARGMGLSQPCGCGSG*RCRGWR Trigger: TCGCCATCCTCTGCATCTTCATCCGGAACCGCATCC...GCATGGTTGGCTCAGACCCATGCCCCTGGCATGACAATGCCATCTGTGCTTCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR CCA 90 bp | GCCGGGACAGAAGGGAAGACGTGCACCCTCACCTCTTGGTATGATCCTTCTCCCTGGGTATGGCCCCTGTaGGTAGCCTCCTTGAGGGTA | + |
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Preference number: 4 (lower is better) Translates to: AGTEGKTCTLTSWYDPSPWVWPL*VASLRV Trigger: TACCCTCAAGGAGGCTACCCACAGGGGCCATACCCA...GGGAGAAGGATCATACCAAGAGGTGAGGGTGCACGTCTTCCCTTCTGTCCCGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR TCA 90 bp | ACGTGCACCCTCACCTCTTGGTATGATCCTTCTCCCCTGAGACCTGGTGTTGGTCGCCCATGCACGAGGTaGAGTCATAGCGGGTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: TCTLTSWYDPSPLRPGVGRPCTR*SHSGSA Trigger: TGCAGACCCGCTATGACTTCACCTCGTGCATGGGCG...ACCAACACCAGGTCTCAGGGGAGAAGGATCATACCAAGAGGTGAGGGTGCACGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR GCA 90 bp | GGGAAGCACAGATGGCATTGTCATGCCAGGGGCATGGGTCTGAGCCAACCATGCACAAGGTTCCAGGGATaGTTTCGCCGGAAGTCCCCA | + |
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Preference number: 4 (lower is better) Translates to: GKHRWHCHARGMGLSQPCTRFQG*FRRKSP Trigger: TGGGGACTTCCGGCGAAAGCATCCCTGGAACCTTGT...GCATGGTTGGCTCAGACCCATGCCCCTGGCATGACAATGCCATCTGTGCTTCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR CCA 90 bp | AGAGAGAGGGAAGCACAGATGGCATTGTCATGCCAGGGGCATGGGTCTGAGCCAAGGGTCCTGGAAGGGTaGTGGCTGTCCATAGGGGTT | + |
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Preference number: 4 (lower is better) Translates to: REREAQMALSCQGHGSEPRVLEG*WLSIGV Trigger: AACCCCTATGGACAGCCACCACCCTTCCAGGACCCT...TGGCTCAGACCCATGCCCCTGGCATGACAATGCCATCTGTGCTTCCCTCTCTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR TCA 90 bp | GGGAAGCACAGATGGCATTGTCATGCCAGGGGCATGGGTCTGAGCCAACCATGCTGTTCTTGTCCCAGTTaGCAGCAGGGAAGTCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: GKHRWHCHARGMGLSQPCCSCPS*QQGSPG Trigger: ACCAGGACTTCCCTGCTGTCAACTGGGACAAGAACA...GCATGGTTGGCTCAGACCCATGCCCCTGGCATGACAATGCCATCTGTGCTTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR CCA 90 bp | TGGCATTTTAACAATGGCAGCACGAGAGAGCCTCCTCCCTTGAAACATGACATCAGGGGCCTGTGGGTATaGGGCCCCAGGGTAGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: WHFNNGSTREPPPLKHDIRGLWV*GPRVGS Trigger: GCTCCCTACCCTGGGGCCCCATACCCACAGGCCCCT...GATGTCATGTTTCAAGGGAGGAGGCTCTCTCGTGCTGCCATTGTTAAAATGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR GCA 90 bp | GTTAAGTATTTGCAGTGTACATACAAGAGGGCGAGAGGGACTCCCTCTGCACCAAGGGTCACCGACAGCTaGAGGGTCAGCACCAGGAAC | + |
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Preference number: 4 (lower is better) Translates to: VKYLQCTYKRARGTPSAPRVTDS*RVSTRN Trigger: GTTCCTGGTGCTGACCCTGCAGCTGTCGGTGACCCT...TGGTGCAGAGGGAGTCCCTCTCGCCCTCTTGTATGTACACTGCAAATACTTAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR GCA 90 bp | GTTAAGTATTTGCAGTGTACATACAAGAGGGCGAGAGGGACTCCCTCTGCACCAGGGCTCAGGGACAGCTaGTTGTTCCCCAGGAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: VKYLQCTYKRARGTPSAPGLRDS*LFPRSS Trigger: GCTACTCCTGGGGAACAAGCAGCTGTCCCTGAGCCC...TGGTGCAGAGGGAGTCCCTCTCGCCCTCTTGTATGTACACTGCAAATACTTAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR CCA 90 bp | TGGCATTTTAACAATGGCAGCACGAGAGAGCCTCCTCCCTTGAAACATGACATCGCTGTCCATAGGGGTTaGGCGGGAAGGGGCTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: WHFNNGSTREPPPLKHDIAVHRG*AGRGSV Trigger: CACAGAGCCCCTTCCCGCCCAACCCCTATGGACAGC...GATGTCATGTTTCAAGGGAGGAGGCTCTCTCGTGCTGCCATTGTTAAAATGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR CCA 90 bp | GTTAAGTATTTGCAGTGTACATACAAGAGGGCGAGAGGGACTCCCTCTGCACCAGTCCTGGAAGGGTGGTaGCTGTCCATAGGGGTTGGG | + |
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Preference number: 4 (lower is better) Translates to: VKYLQCTYKRARGTPSAPVLEGW*LSIGVG Trigger: CCCAACCCCTATGGACAGCCACCACCCTTCCAGGAC...TGGTGCAGAGGGAGTCCCTCTCGCCCTCTTGTATGTACACTGCAAATACTTAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR CCA 90 bp | GGCCATGCTGTGGCCATAGAGGGTCCAGACGTTAAGTATTTGCAGTGTACATACAGGGTAACCACCCTGTaGATAGGGGCTGGGACCATG | + |
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Preference number: 4 (lower is better) Translates to: GHAVAIEGPDVKYLQCTYRVTTL*IGAGTM Trigger: CATGGTCCCAGCCCCTATCCACAGGGTGGTTACCCT...GTATGTACACTGCAAATACTTAACGTCTGGACCCTCTATGGCCACAGCATGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR GCA 90 bp | ACGTGCACCCTCACCTCTTGGTATGATCCTTCTCCCCTGAGACCTGGTGTTGGTAAAAGCTGGCTATCATaGCCACCATGTAGGACAAGC | + |
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Preference number: 4 (lower is better) Translates to: TCTLTSWYDPSPLRPGVGKSWLS*PPCRTS Trigger: GCTTGTCCTACATGGTGGGCATGATAGCCAGCTTTT...ACCAACACCAGGTCTCAGGGGAGAAGGATCATACCAAGAGGTGAGGGTGCACGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR CCA 90 bp | AAAGGGGGCCATGCTGTGGCCATAGAGGGTCCAGACGTTAAGTATTTGCAGTGTGTTGTCATAGTAGGATaGAGGCCCTTCCTCCTGGTA | + |
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Preference number: 4 (lower is better) Translates to: KGGHAVAIEGPDVKYLQCVVIVG*RPFLLV Trigger: TACCAGGAGGAAGGGCCTCCATCCTACTATGACAAC...ACACTGCAAATACTTAACGTCTGGACCCTCTATGGCCACAGCATGGCCCCCTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR CAA 90 bp | TCCTTCTCCCCTGAGACCTGGTGTTGGTCCCTGACCCTGGGATGGGGCTGGCAGCTCAGGGACAGCTGCTaGTTCCCCAGGAGTAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: SFSPETWCWSLTLGWGWQLRDSC*FPRSSW Trigger: CCAGCTACTCCTGGGGAACAAGCAGCTGTCCCTGAG...CTGCCAGCCCCATCCCAGGGTCAGGGACCAACACCAGGTCTCAGGGGAGAAGGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS CCA 90 bp | CTTGAGGGTAGGGCCCTTGAGGGTAACCACCCTGTGGATAGGGGCTaGGACCATGGGGATATCCTGGCTGACCATAGGGAGAGGGCTGGA | + |
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Preference number: 5 (lower is better) Translates to: LEGRALEGNHPVDRG*DHGDILADHRERAG Trigger: TCCAGCCCTCTCCCTATGGTCAGCCAGGATATCCCCATGGTCCCAGCCCCTATCCACAGGGTGGTTACCCTCAAGGGCCCTACCCTCAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000023225.8 ENSMUST00000229772.2 ENSMUST00000230347.2 |
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| CDS-3UTR CAA 90 bp | CACAGATGGCATTGTCATGCCAGGGGCATGGGTCTGAGCCAACCATGCCACCTGATGTTCTTGTCCCAGTaGACAGCAGGGAAGTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: HRWHCHARGMGLSQPCHLMFLSQ*TAGKSW Trigger: CCAGGACTTCCCTGCTGTCAACTGGGACAAGAACAT...CAGGTGGCATGGTTGGCTCAGACCCATGCCCCTGGCATGACAATGCCATCTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS TCA 90 bp | TCCAGACATTCTCCCGGACAAAGCCCTTCACCTCCCCAACAAAAGTaGAAATGGCCACAGTGGACAGGGTCACCGACAGCTGCAGGGTCA | + |
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Preference number: 5 (lower is better) Translates to: SRHSPGQSPSPPQQK*KWPQWTGSPTAAGS Trigger: TGACCCTGCAGCTGTCGGTGACCCTGTCCACTGTGGCCATTTTCACTTTTGTTGGGGAGGTGAAGGGCTTTGTCCGGGAGAATGTCTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS GCA 90 bp | GACAAGCTGACGGTCAGGATCGACAGAGCAACAAGGTTCCAGGGATaGTTTCGCCGGAAGTCCCCACAACAGCTGAGAACAATGAGGGAG | + |
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Preference number: 5 (lower is better) Translates to: DKLTVRIDRATRFQG*FRRKSPQQLRTMRE Trigger: CTCCCTCATTGTTCTCAGCTGTTGTGGGGACTTCCGGCGAAAGCATCCCTGGAACCTTGTTGCTCTGTCGATCCTGACCGTCAGCTTGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS GCA 90 bp | CACCGTGAAGCAGACAGCTGTGGTGATGCCCACGGCCATGATGACTaGCTCCGTGTTGTAAAAGCTGGCTATCATGCCCACCATGTAGGA | + |
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Preference number: 5 (lower is better) Translates to: HREADSCGDAHGHDD*LRVVKAGYHAHHVG Trigger: TCCTACATGGTGGGCATGATAGCCAGCTTTTACAACACGGAGGCAGTCATCATGGCCGTGGGCATCACCACAGCTGTCTGCTTCACGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS GCA 90 bp | CCAACAAAAGTGAAAATGGCCACAGTGGACAGGGTCACCGACAGCTaGAGGGTCAGCACCAGGAACACCTTTCTGATAAAGGCCTGGCGA | + |
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Preference number: 5 (lower is better) Translates to: PTKVKMATVDRVTDS*RVSTRNTFLIKAWR Trigger: TCGCCAGGCCTTTATCAGAAAGGTGTTCCTGGTGCTGACCCTGCAGCTGTCGGTGACCCTGTCCACTGTGGCCATTTTCACTTTTGTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS-3UTR CAA 90 bp | TGCAACAGTGAGTGGACAGAAGGTGGCACAGAAATGCAGCCCTGTCGCCCCTTGATATATAGGAAGATGTaGATGATGTCCGTGTACAGG | + |
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Preference number: 5 (lower is better) Translates to: CNSEWTEGGTEMQPCRPLIYRKM*MMSVYR Trigger: CCTGTACACGGACATCATCAACATCTTCCTATATAT...CAAGGGGCGACAGGGCTGCATTTCTGTGCCACCTTCTGTCCACTCACTGTTGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS TCA 72 bp | TGGAGGCCCTTCCTCCTGGTAGTTCCCATGCTGAGGTaGGCCAGGGTCCTGGAAGGGTGGTGGCTGTCCATA | + |
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Preference number: 6 (lower is better) Translates to: WRPFLLVVPMLR*ARVLEGWWLSI Trigger: TATGGACAGCCACCACCCTTCCAGGACCCTGGCTCACCTCAGCATGGGAACTACCAGGAGGAAGGGCCTCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023225.8 ENSMUST00000230347.2 |
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| CDS CCA 72 bp | AGGGCCCTTGAGGGTAACCACCCTGTGGATAGGGGCTaGGACCATGGGGATATCCTGGCTGACCATAGGGAG | + |
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Preference number: 6 (lower is better) Translates to: RALEGNHPVDRG*DHGDILADHRE Trigger: CTCCCTATGGTCAGCCAGGATATCCCCATGGTCCCAGCCCCTATCCACAGGGTGGTTACCCTCAAGGGCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000023225.8 ENSMUST00000229772.2 ENSMUST00000230347.2 |
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| CDS CCA 72 bp | TCCTTGAGGGTAGGGCCCTTGAGGGTAACCACCCTGTaGATAGGGGCTGGGACCATGGGGATATCCTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: SLRVGPLRVTTL*IGAGTMGISWL Trigger: CAGCCAGGATATCCCCATGGTCCCAGCCCCTATCCACAGGGTGGTTACCCTCAAGGGCCCTACCCTCAAGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000023225.8 ENSMUST00000229772.2 ENSMUST00000230347.2 |
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| CDS CAA 90 bp | TTCAGGGCCGCAAACACATATTCTTCTGGGCTCAGGGACAGCTGCTaGTTCCCCAGGAGTAGCTGGGTGTCCACTGCCAGGAAGCAGGTG | + |
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Preference number: 6 (lower is better) Translates to: FRAANTYSSGLRDSC*FPRSSWVSTARKQV Trigger: CACCTGCTTCCTGGCAGTGGACACCCAGCTACTCCTGGGGAACAAGCAGCTGTCCCTGAGCCCAGAAGAATATGTGTTTGCGGCCCTGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS TCA 72 bp | TCTCCCGGACAAAGCCCTTCACCTCCCCAACAAAAGTaGAAATGGCCACAGTGGACAGGGTCACCGACAGCT | + |
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Preference number: 6 (lower is better) Translates to: SPGQSPSPPQQK*KWPQWTGSPTA Trigger: AGCTGTCGGTGACCCTGTCCACTGTGGCCATTTTCACTTTTGTTGGGGAGGTGAAGGGCTTTGTCCGGGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS GCA 72 bp | ACGGTCAGGATCGACAGAGCAACAAGGTTCCAGGGATaGTTTCGCCGGAAGTCCCCACAACAGCTGAGAACA | + |
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Preference number: 6 (lower is better) Translates to: TVRIDRATRFQG*FRRKSPQQLRT Trigger: TGTTCTCAGCTGTTGTGGGGACTTCCGGCGAAAGCATCCCTGGAACCTTGTTGCTCTGTCGATCCTGACCGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS CCA 72 bp | GTTGACAGCAGGGAAGTCCTGGTTGTCATAGTAGGATaGAGGCCCTTCCTCCTGGTAGTTCCCATGCTGAGG | + |
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Preference number: 6 (lower is better) Translates to: VDSREVLVVIVG*RPFLLVVPMLR Trigger: CCTCAGCATGGGAACTACCAGGAGGAAGGGCCTCCATCCTACTATGACAACCAGGACTTCCCTGCTGTCAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS GCA 72 bp | GTGAAAATGGCCACAGTGGACAGGGTCACCGACAGCTaGAGGGTCAGCACCAGGAACACCTTTCTGATAAAG | + |
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Preference number: 6 (lower is better) Translates to: VKMATVDRVTDS*RVSTRNTFLIK Trigger: CTTTATCAGAAAGGTGTTCCTGGTGCTGACCCTGCAGCTGTCGGTGACCCTGTCCACTGTGGCCATTTTCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS TCA 72 bp | AAAAGCTGGCTATCATGCCCACCATGTAGGACAAGCTaGCGGTCAGGATCGACAGAGCAACAAGGTTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: KSWLSCPPCRTS*RSGSTEQQGSR Trigger: CCTGGAACCTTGTTGCTCTGTCGATCCTGACCGTCAGCTTGTCCTACATGGTGGGCATGATAGCCAGCTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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| CDS CAA 72 bp | AGGAACACCTTTCTGATAAAGGCCTGGCGAATGTTCTaGTCCCAGTTGACAGCAGGGAAGTCCTGGTTGTCA | + |
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Preference number: 6 (lower is better) Translates to: RNTFLIKAWRMF*SQLTAGKSWLS Trigger: TGACAACCAGGACTTCCCTGCTGTCAACTGGGACAAGAACATTCGCCAGGCCTTTATCAGAAAGGTGTTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023225.8 |
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