RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GRIN2D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002771

Ensembl transcript IDs: ENSMUST00000002848.10, ENSMUST00000211713.2

Found 215 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCCTTCCCAACCCATaGGGGTCTTGTCCACTTAGCGCGTCCCCTCGGGTCGTGGCCTGC +
Preference number: 1 (lower is better)
Translates to: SRRGPARSVSVLPNP*GSCPLSASPRVVAC
Trigger: GCAGGCCACGACCCGAGGGGACGCGCTAAGTGGACAAGACCCTCATGGGTTGGGAAGGACAGAAACGGACCTGGCTGGACCTCGCCTGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
3UTR-3UTR CCA 90 bp GGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCGTCCCCTCGGGTCGTaGCCTGCGCTGACCGAGGGG +
Preference number: 2 (lower is better)
Translates to: GVGRRTLLQARSSQVRFCRPLGS*PALTEG
Trigger: CCCCTCGGTCAGCGCAGGCCACGACCCGAGGGGACG...ACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
3UTR-3UTR CCA 90 bp GAGCTGCACAGTGATGTGAGGGCCATGGCCCGGAGCGTAGGGGTGGGGCGCGGCCCCAAGGCAAGGGGGTaGGGCGCAGGACGCTGCTCC +
Preference number: 2 (lower is better)
Translates to: ELHSDVRAMARSVGVGRGPKARG*GAGRCS
Trigger: GGAGCAGCGTCCTGCGCCCCACCCCCTTGCCTTGGG...GCCGCGCCCCACCCCTACGCTCCGGGCCATGGCCCTCACATCACTGTGCAGCTC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
3UTR-3UTR GCA 90 bp GGGTTTCTGTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTTGGGGCGCAGGACGCTaGTCCAGGCGAGGTCCAGCC +
Preference number: 2 (lower is better)
Translates to: GFLCGGAKVWSHSLAYASWGAGR*SRRGPA
Trigger: GGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCA...AGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACACAGAAACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
3UTR-3UTR CCA 90 bp ATCACTGAAGGGTCACAAATAAGGGCTGGACTTGAAGATGTGATTGGTGGCATCCGTCCCCTCGGGTCGTaGCCTGCGCTGACCGAGGGG +
Preference number: 2 (lower is better)
Translates to: ITEGSQIRAGLEDVIGGIRPLGS*PALTEG
Trigger: CCCCTCGGTCAGCGCAGGCCACGACCCGAGGGGACG...GATGCCACCAATCACATCTTCAAGTCCAGCCCTTATTTGTGACCCTTCAGTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
3UTR-3UTR TCA 90 bp GGAGGCGTAAAAACATGGTTTTATTCCAAACACTGCAGTGTAGGAGCGGGAGAGAGCTGCACAGTGATGTaGGGGCCATGGCCCGGAGCG +
Preference number: 2 (lower is better)
Translates to: GGVKTWFYSKHCSVGAGESCTVM*GPWPGA
Trigger: CGCTCCGGGCCATGGCCCTCACATCACTGTGCAGCT...CTCTCCCGCTCCTACACTGCAGTGTTTGGAATAAAACCATGTTTTTACGCCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
3UTR-3UTR TCA 90 bp GGAGGCGTAAAAACATGGTTTTATTCCAAACACTGCAGTGTAGGAGCGGGAGAGAGCCTCAGACCCTGCTaGAATCTGGGAAAGGAGACC +
Preference number: 2 (lower is better)
Translates to: GGVKTWFYSKHCSVGAGESLRPC*NLGKET
Trigger: GGTCTCCTTTCCCAGATTTCAGCAGGGTCTGAGGCT...CTCTCCCGCTCCTACACTGCAGTGTTTGGAATAAAACCATGTTTTTACGCCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
3UTR TCA 72 bp GGTCCAGCCAGGTCCGTTTCTGTCCTTCCCAACCCATaGGGGTCTTGTCCACTTAGCGCGTCCCCTCGGGTC +
Preference number: 3 (lower is better)
Translates to: GPARSVSVLPNP*GSCPLSASPRV
Trigger: GACCCGAGGGGACGCGCTAAGTGGACAAGACCCTCATGGGTTGGGAAGGACAGAAACGGACCTGGCTGGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
3UTR CCA 72 bp TTCTGTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTaGCATACGCGTCTCACAGTTTTGAGTCCTGATGAA +
Preference number: 3 (lower is better)
Translates to: FCVAGPRSGVTV*HTRLTVLSPDE
Trigger: TTCATCAGGACTCAAAACTGTGAGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACACAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
3UTR TCA 72 bp CTGGAGTCACAGTTTGGCATACGCGTCTCACAGTTTTaGGTCCTGATGAATGAAAGGTTAAAAACAGGCTCC +
Preference number: 3 (lower is better)
Translates to: LESQFGIRVSQF*VLMNERLKTGS
Trigger: GGAGCCTGTTTTTAACCTTTCATTCATCAGGACTCAAAACTGTGAGACGCGTATGCCAAACTGTGACTCCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGCAAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTCGTGGGGGCCGCCCGTaGGCAGGAGCTCAGGTCCTC +
Preference number: 4 (lower is better)
Translates to: GKGVGRRTLLQARSSQVRRGGRP*AGAQVL
Trigger: GAGGACCTGAGCTCCTGCCCACGGGCGGCCCCCACG...ACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTTGCC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GAGCTGCACAGTGATGTGAGGGCCATGGCCCGGAGCGTAGGGGTGGGGCGCGGCCTGTGTCGGTGGTGGTaGGGTGCGGCGGCGGGCGCA +
Preference number: 4 (lower is better)
Translates to: ELHSDVRAMARSVGVGRGLCRWW*GAAAGA
Trigger: TGCGCCCGCCGCCGCACCGCACCACCACCGACACAG...GCCGCGCCCCACCCCTACGCTCCGGGCCATGGCCCTCACATCACTGTGCAGCTC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGCAAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTAGTGCGCAGAGCCCCTaGGTGTGCCCAGGTCCCCGC +
Preference number: 4 (lower is better)
Translates to: GKGVGRRTLLQARSSQVRSAQSP*VCPGPR
Trigger: GCGGGGACCTGGGCACACGCAGGGGCTCTGCGCACT...ACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTTGCC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGCAAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTCCAGGCTGGCGCAGTaGCGGCAGTGCCATGCGGGG +
Preference number: 4 (lower is better)
Translates to: GKGVGRRTLLQARSSQVRSRLAQ*RQCHAG
Trigger: CCCCGCATGGCACTGCCGCCACTGCGCCAGCCTGGA...ACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTTGCC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGCAAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTGGCTCGGCCGGCTCTTaGTCGCGCACGATGGCGAAG +
Preference number: 4 (lower is better)
Translates to: GKGVGRRTLLQARSSQVRGSAGS*SRTMAK
Trigger: CTTCGCCATCGTGCGCGAGCAAGAGCCGGCCGAGCC...ACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTTGCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCTGTGTCGGTGGTGGTaGGGTGCGGCGGCGGGCGCA +
Preference number: 4 (lower is better)
Translates to: GVGRRTLLQARSSQVRFCLCRWW*GAAAGA
Trigger: TGCGCCCGCCGCCGCACCGCACCACCACCGACACAG...ACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCCCTCCGGGAACGGGCTaGCGCACGCCAGCGCCAGCA +
Preference number: 4 (lower is better)
Translates to: GWGAGRCSRRGPARSVSVPPGTG*RTPAPA
Trigger: TGCTGGCGCTGGCGTGCGCCAGCCCGTTCCCGGAGG...GACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GAGCTGCACAGTGATGTGAGGGCCATGGCCCGGAGCGTAGGGGTGGGGCGCGGCGGGCCTGGGCACCTCTaGCCACCACCGCCACACCAG +
Preference number: 4 (lower is better)
Translates to: ELHSDVRAMARSVGVGRGGPGHL*PPPPHQ
Trigger: CTGGTGTGGCGGTGGTGGCCAGAGGTGCCCAGGCCC...GCCGCGCCCCACCCCTACGCTCCGGGCCATGGCCCTCACATCACTGTGCAGCTC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp AGGCAAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTCCGGTGAGATGCGGTaGGCAGGGGCGGCCCCCAAT +
Preference number: 4 (lower is better)
Translates to: RQGGGAQDAAPGEVQPGPSGEMR*AGAAPN
Trigger: ATTGGGGGCCGCCCCTGCCCACCGCATCTCACCGGA...CGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTTGCCT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp GAGCTGCACAGTGATGTGAGGGCCATGGCCCGGAGCGTAGGGGTGGGGCGCGGCCCTTCTCCTTGGGTGTaGGTACGAGCGCGGCGCCGC +
Preference number: 4 (lower is better)
Translates to: ELHSDVRAMARSVGVGRGPSPWV*VRARRR
Trigger: GCGGCGCCGCGCTCGTACTCACACCCAAGGAGAAGG...GCCGCGCCCCACCCCTACGCTCCGGGCCATGGCCCTCACATCACTGTGCAGCTC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGCAAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTCTCCCCGCGGTGGGTaGGATTCTGGGCGCGACAGT +
Preference number: 4 (lower is better)
Translates to: GKGVGRRTLLQARSSQVRSPRGG*DSGRDS
Trigger: ACTGTCGCGCCCAGAATCGCACCCACCGCGGGGAGA...ACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTTGCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCGTGTCTCCGGTGAGATaGGGTGGGCAGGGGCGGCCC +
Preference number: 4 (lower is better)
Translates to: GWGAGRCSRRGPARSVSVVSPVR*GGQGRP
Trigger: GGGCCGCCCCTGCCCACCGCATCTCACCGGAGACAC...GACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GAGCTGCACAGTGATGTGAGGGCCATGGCCCGGAGCGTAGGGGTGGGGCGCGGCTCTCGCAGCAGGGCCTaGGCACCTCTGGCCACCACC +
Preference number: 4 (lower is better)
Translates to: ELHSDVRAMARSVGVGRGSRSRA*APLATT
Trigger: GGTGGTGGCCAGAGGTGCCCAGGCCCTGCTGCGAGA...GCCGCGCCCCACCCCTACGCTCCGGGCCATGGCCCTCACATCACTGTGCAGCTC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp AGGCAAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGAGACTCTCCCCGCGGTaGGTGCGATTCTGGGCGCGA +
Preference number: 4 (lower is better)
Translates to: RQGGGAQDAAPGEVQPGPRLSPR*VRFWAR
Trigger: TCGCGCCCAGAATCGCACCCACCGCGGGGAGAGTCT...CGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTTGCCT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GAGCTGCACAGTGATGTGAGGGCCATGGCCCGGAGCGTAGGGGTGGGGCGCGGCGTAGCAGCTCCAGGCTaGCGCAGTGGCGGCAGTGCC +
Preference number: 4 (lower is better)
Translates to: ELHSDVRAMARSVGVGRGVAAPG*RSGGSA
Trigger: GGCACTGCCGCCACTGCGCCAGCCTGGAGCTGCTAC...GCCGCGCCCCACCCCTACGCTCCGGGCCATGGCCCTCACATCACTGTGCAGCTC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp AGGCAAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGCCAGCGTGGCCACAGTaGGGTGCTGCGTGTCATCCA +
Preference number: 4 (lower is better)
Translates to: RQGGGAQDAAPGEVQPGPPAWPQ*GAACHP
Trigger: TGGATGACACGCAGCACCTCACTGTGGCCACGCTGG...CGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTTGCCT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp GAGCTGCACAGTGATGTGAGGGCCATGGCCCGGAGCGTAGGGGTGGGGCGCGGCGGCTGTGGGTACGGTTaGGCTGGCTCCGGCAGGGAA +
Preference number: 4 (lower is better)
Translates to: ELHSDVRAMARSVGVGRGGCGYG*AGSGRE
Trigger: TTCCCTGCCGGAGCCAGCTCAACCGTACCCACAGCC...GCCGCGCCCCACCCCTACGCTCCGGGCCATGGCCCTCACATCACTGTGCAGCTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGCAAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTAGCAGGTCGCAGAGCTaGAGCACAAGGCTGCGAGGG +
Preference number: 4 (lower is better)
Translates to: GKGVGRRTLLQARSSQVRSRSQS*STRLRG
Trigger: CCCTCGCAGCCTTGTGCTGCAGCTCTGCGACCTGCT...ACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTTGCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp AGGCAAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGCCGTCTAGGCCGTCGTaGGAGCAGCTGAGATGGCGT +
Preference number: 4 (lower is better)
Translates to: RQGGGAQDAAPGEVQPGPPSRPS*EQLRWR
Trigger: ACGCCATCTCAGCTGCTCGCACGACGGCCTAGACGG...CGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTTGCCT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCTCTCGCAGCAGGGCCTaGGCACCTCTGGCCACCACC +
Preference number: 4 (lower is better)
Translates to: GWGAGRCSRRGPARSVSVSRSRA*APLATT
Trigger: GGTGGTGGCCAGAGGTGCCCAGGCCCTGCTGCGAGA...GACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GAGCTGCACAGTGATGTGAGGGCCATGGCCCGGAGCGTAGGGGTGGGGCGCGGCCGGTGGGTGCGATTCTaGGCGCGACAGTCATGGCCC +
Preference number: 4 (lower is better)
Translates to: ELHSDVRAMARSVGVGRGRWVRF*ARQSWP
Trigger: GGGCCATGACTGTCGCGCCCAGAATCGCACCCACCG...GCCGCGCCCCACCCCTACGCTCCGGGCCATGGCCCTCACATCACTGTGCAGCTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp AGGCAAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGAATCCATGCGGTGGGTaGGCCCCAGACAGTGCCGCA +
Preference number: 4 (lower is better)
Translates to: RQGGGAQDAAPGEVQPGPNPCGG*APDSAA
Trigger: TGCGGCACTGTCTGGGGCCCACCCACCGCATGGATT...CGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTTGCCT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp CCAACCCATGAGGGTCTTGTCCACTTAGCGCGTCCCCTCGGGTCGTGGCCTGCGCGGGATACGCCGGACTaGGCAGCGGCTGCGGCGGTG +
Preference number: 4 (lower is better)
Translates to: PTHEGLVHLARPLGSWPARDTPD*AAAAAV
Trigger: CACCGCCGCAGCCGCTGCCCAGTCCGGCGTATCCCG...CGCAGGCCACGACCCGAGGGGACGCGCTAAGTGGACAAGACCCTCATGGGTTGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCGTAGCAGCTCCAGGCTaGCGCAGTGGCGGCAGTGCC +
Preference number: 4 (lower is better)
Translates to: GWGAGRCSRRGPARSVSVVAAPG*RSGGSA
Trigger: GGCACTGCCGCCACTGCGCCAGCCTGGAGCTGCTAC...GACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp GGTGGGCTCCAAGAACCCCGCCCCCTTGCTCTCAGGATGGGTGAGATTTGGGCGGAGGGTCGGAGCCGTTaGGCACCAGCGCCACGGGCC +
Preference number: 4 (lower is better)
Translates to: GGLQEPRPLALRMGEIWAEGRSR*APAPRA
Trigger: GGCCCGTGGCGCTGGTGCTCAACGGCTCCGACCCTC...CGCCCAAATCTCACCCATCCTGAGAGCAAGGGGGCGGGGTTCTTGGAGCCCACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp AGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCCTTCCCAACCCGAGGGTCGGAGCCGTTaGGCACCAGCGCCACGGGCC +
Preference number: 4 (lower is better)
Translates to: RTLLQARSSQVRFCPSQPEGRSR*APAPRA
Trigger: GGCCCGTGGCGCTGGTGCTCAACGGCTCCGACCCTC...GGGTTGGGAAGGACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp GAGCTGCACAGTGATGTGAGGGCCATGGCCCGGAGCGTAGGGGTGGGGCGCGGCCCAGCGTGGCCACAGTaGGGTGCTGCGTGTCATCCA +
Preference number: 4 (lower is better)
Translates to: ELHSDVRAMARSVGVGRGPAWPQ*GAACHP
Trigger: TGGATGACACGCAGCACCTCACTGTGGCCACGCTGG...GCCGCGCCCCACCCCTACGCTCCGGGCCATGGCCCTCACATCACTGTGCAGCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp AGGCAAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTCCCTGCCTTGAGCTaGGTGAGCGCCTCCTCCACT +
Preference number: 4 (lower is better)
Translates to: RQGGGAQDAAPGEVQPGPFPALS*VSASST
Trigger: AGTGGAGGAGGCGCTCACTCAGCTCAAGGCAGGGAA...CGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTTGCCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp AGGCAAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGATGGGCAGCGAGGTCTaGGCCGACAGGAAGTCGAGA +
Preference number: 4 (lower is better)
Translates to: RQGGGAQDAAPGEVQPGPMGSEV*ADRKSR
Trigger: TCTCGACTTCCTGTCGGCGCAGACCTCGCTGCCCAT...CGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTTGCCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTGTCAGCGCTCCTCGATaGTCCCAGCCCACCAGGCTG +
Preference number: 4 (lower is better)
Translates to: GVGRRTLLQARSSQVRFCVSAPR*SQPTRL
Trigger: CAGCCTGGTGGGCTGGGAGCATCGAGGAGCGCTGAC...ACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp CATGAGGGTCTTGTCCACTTAGCGCGTCCCCTCGGGTCGTGGCCTGCGCTGACCGTGTCTCCGGTGAGATaGGGTGGGCAGGGGCGGCCC +
Preference number: 4 (lower is better)
Translates to: HEGLVHLARPLGSWPALTVSPVR*GGQGRP
Trigger: GGGCCGCCCCTGCCCACCGCATCTCACCGGAGACAC...GGTCAGCGCAGGCCACGACCCGAGGGGACGCGCTAAGTGGACAAGACCCTCATG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp CATGAGGGTCTTGTCCACTTAGCGCGTCCCCTCGGGTCGTGGCCTGCGCTGACCCGTGCACGGCCACGATaGGCAGCGAGGTCTGCGCCG +
Preference number: 4 (lower is better)
Translates to: HEGLVHLARPLGSWPALTRARPR*AARSAP
Trigger: CGGCGCAGACCTCGCTGCCCATCGTGGCCGTGCACG...GGTCAGCGCAGGCCACGACCCGAGGGGACGCGCTAAGTGGACAAGACCCTCATG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GAGCTGCACAGTGATGTGAGGGCCATGGCCCGGAGCGTAGGGGTGGGGCGCGGCTGGGCGCGACAGTCATaGCCCAGCTCAGGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: ELHSDVRAMARSVGVGRGWARQS*PSSGRK
Trigger: CTTCCTGCCTGAGCTGGGCCATGACTGTCGCGCCCA...GCCGCGCCCCACCCCTACGCTCCGGGCCATGGCCCTCACATCACTGTGCAGCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGCAAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTAGGAAATCCATGCGGTaGGTGGGCCCCAGACAGTGC +
Preference number: 4 (lower is better)
Translates to: GKGVGRRTLLQARSSQVRRKSMR*VGPRQC
Trigger: GCACTGTCTGGGGCCCACCCACCGCATGGATTTCCT...ACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTTGCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTGCCCCTGCGGCTCGATaGGGCCGTAGTATCGGTGGA +
Preference number: 4 (lower is better)
Translates to: GVGRRTLLQARSSQVRFCAPAAR*GRSIGG
Trigger: TCCACCGATACTACGGCCCCATCGAGCCGCAGGGGC...ACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCGCCCCTGCGGCTCGATaGGGCCGTAGTATCGGTGGA +
Preference number: 4 (lower is better)
Translates to: GWGAGRCSRRGPARSVSVAPAAR*GRSIGG
Trigger: TCCACCGATACTACGGCCCCATCGAGCCGCAGGGGC...GACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCGCCAGCAGAGCGCACTaGAAACAGCCCAGCAGGCAG +
Preference number: 4 (lower is better)
Translates to: GWGAGRCSRRGPARSVSVASRAH*KQPSRQ
Trigger: CTGCCTGCTGGGCTGTTTGCAGTGCGCTCTGCTGGC...GACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGTGGGCTCCAAGAACCCCGCCCCCTTGCTCTCAGGATGGGTGAGATTTGGGCGAGTGCGCAGAGCCCCTaGGTGTGCCCAGGTCCCCGC +
Preference number: 4 (lower is better)
Translates to: GGLQEPRPLALRMGEIWASAQSP*VCPGPR
Trigger: GCGGGGACCTGGGCACACGCAGGGGCTCTGCGCACT...CGCCCAAATCTCACCCATCCTGAGAGCAAGGGGGCGGGGTTCTTGGAGCCCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp AAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTCCAGGCTGGAGAAGTaGGCAGAGCCCCTGCGTGTG +
Preference number: 4 (lower is better)
Translates to: KGVGRRTLLQARSSQVRFSRLEK*AEPLRV
Trigger: CACACGCAGGGGCTCTGCGCACTTCTCCAGCCTGGA...GAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCCTTCCCAACAGGAAGTCGAGAATaGGCGCGACGGCGGGCGCGC +
Preference number: 4 (lower is better)
Translates to: AQDAAPGEVQPGPFLSFPTGSRE*ARRRAR
Trigger: GCGCGCCCGCCGTCGCGCCCATTCTCGACTTCCTGT...TGGGAAGGACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCTGGGTACGGTTGAGCTaGCTCCGGCAGGGAACCGAG +
Preference number: 4 (lower is better)
Translates to: GWGAGRCSRRGPARSVSVWVRLS*LRQGTE
Trigger: CTCGGTTCCCTGCCGGAGCCAGCTCAACCGTACCCA...GACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCGGGGCGTTTGCCCGTaGCCAGGCTTCGGTTATAGC +
Preference number: 4 (lower is better)
Translates to: GVGRRTLLQARSSQVRFCRGVCP*PGFGYS
Trigger: GCTATAACCGAAGCCTGGCCACGGGCAAACGCCCCG...ACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTTGCGAGCAGCTGAGATaGCGTGGTGGCGGTAGCAGC +
Preference number: 4 (lower is better)
Translates to: GVGRRTLLQARSSQVRFCCEQLR*RGGGSS
Trigger: GCTGCTACCGCCACCACGCCATCTCAGCTGCTCGCA...ACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp GGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCTTCCCTGCCTTGAGCTaGGTGAGCGCCTCCTCCACT +
Preference number: 4 (lower is better)
Translates to: GWGAGRCSRRGPARSVSVFPALS*VSASST
Trigger: AGTGGAGGAGGCGCTCACTCAGCTCAAGGCAGGGAA...GACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp GGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTGTTGTGGCAGATCCCTaGAAGCCACAGCCGCTCCAG +
Preference number: 4 (lower is better)
Translates to: GVGRRTLLQARSSQVRFCVVADP*KPQPLQ
Trigger: CTGGAGCGGCTGTGGCTTTCAGGGATCTGCCACAAC...ACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp AAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCGTGGAGGAGCCAAGCTaGAGGAAGGTGGAGCCCTTC +
Preference number: 4 (lower is better)
Translates to: KGVGRRTLLQARSSQVRFVEEPS*RKVEPF
Trigger: GAAGGGCTCCACCTTCCTGCAGCTTGGCTCCTCCAC...GAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCCTTCCCAGACACTACGGAGCTGTaGGCCCAGGACGGCCTCACC +
Preference number: 4 (lower is better)
Translates to: AQDAAPGEVQPGPFLSFPDTTEL*AQDGLT
Trigger: GGTGAGGCCGTCCTGGGCGCACAGCTCCGTAGTGTC...TGGGAAGGACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCCTTCCCATCTCCCCGCGGTGGGTaGGATTCTGGGCGCGACAGT +
Preference number: 4 (lower is better)
Translates to: AQDAAPGEVQPGPFLSFPSPRGG*DSGRDS
Trigger: ACTGTCGCGCCCAGAATCGCACCCACCGCGGGGAGA...TGGGAAGGACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTGGCGTCCAGTTTCCCTaGCTTGAGCTGAGTGAGCGC +
Preference number: 4 (lower is better)
Translates to: GVGRRTLLQARSSQVRFCGVQFP*LELSER
Trigger: GCGCTCACTCAGCTCAAGGCAGGGAAACTGGACGCC...ACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp AAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCCCAGTAGGAAATCCATaGGGTGGGTGGGCCCCAGAC +
Preference number: 4 (lower is better)
Translates to: KGVGRRTLLQARSSQVRFPVGNP*GGWAPD
Trigger: GTCTGGGGCCCACCCACCGCATGGATTTCCTACTGG...GAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GAGCTGCACAGTGATGTGAGGGCCATGGCCCGGAGCGTAGGGGTGGGGCGCGGCCAAGCTGCAGGAAGGTaGAGCCCTTCTCCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: ELHSDVRAMARSVGVGRGQAAGR*SPSPWV
Trigger: CACCCAAGGAGAAGGGCTCCACCTTCCTGCAGCTTG...GCCGCGCCCCACCCCTACGCTCCGGGCCATGGCCCTCACATCACTGTGCAGCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp CCAACCCATGAGGGTCTTGTCCACTTAGCGCGTCCCCTCGGGTCGTGGCCTGCGCGGTGGGTGCGATTCTaGGCGCGACAGTCATGGCCC +
Preference number: 4 (lower is better)
Translates to: PTHEGLVHLARPLGSWPARWVRF*ARQSWP
Trigger: GGGCCATGACTGTCGCGCCCAGAATCGCACCCACCG...CGCAGGCCACGACCCGAGGGGACGCGCTAAGTGGACAAGACCCTCATGGGTTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp AAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCGGCGAAGTAGGAAGGTaGTGGCTTCTGTGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: KGVGRRTLLQARSSQVRFGEVGR*WLLWGL
Trigger: CAGCCCCCACAGAAGCCACCACCTTCCTACTTCGCC...GAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp CCAACCCATGAGGGTCTTGTCCACTTAGCGCGTCCCCTCGGGTCGTGGCCTGCGGCTGAGGTCCCACCATaGACCAGACGTAGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: PTHEGLVHLARPLGSWPAAEVPP*TRRSQA
Trigger: GGCCTGGCTACGTCTGGTTCATGGTGGGACCTCAGC...CGCAGGCCACGACCCGAGGGGACGCGCTAAGTGGACAAGACCCTCATGGGTTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp GGTGGGCTCCAAGAACCCCGCCCCCTTGCTCTCAGGATGGGTGAGATTTGGGCGCCACCTCCGGCCAGCTaGGGTCCCACCATGAACCAG +
Preference number: 4 (lower is better)
Translates to: GGLQEPRPLALRMGEIWAPPPAS*GPTMNQ
Trigger: CTGGTTCATGGTGGGACCTCAGCTGGCCGGAGGTGG...CGCCCAAATCTCACCCATCCTGAGAGCAAGGGGGCGGGGTTCTTGGAGCCCACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp GGTGGGCTCCAAGAACCCCGCCCCCTTGCTCTCAGGATGGGTGAGATTTGGGCGGGCTGTGGGTACGGTTaGGCTGGCTCCGGCAGGGAA +
Preference number: 4 (lower is better)
Translates to: GGLQEPRPLALRMGEIWAGCGYG*AGSGRE
Trigger: TTCCCTGCCGGAGCCAGCTCAACCGTACCCACAGCC...CGCCCAAATCTCACCCATCCTGAGAGCAAGGGGGCGGGGTTCTTGGAGCCCACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp GGTGGGCTCCAAGAACCCCGCCCCCTTGCTCTCAGGATGGGTGAGATTTGGGCGCGTCGTGCGAGCAGCTaGGATGGCGTGGTGGCGGTA +
Preference number: 4 (lower is better)
Translates to: GGLQEPRPLALRMGEIWARRASS*DGVVAV
Trigger: TACCGCCACCACGCCATCTCAGCTGCTCGCACGACG...CGCCCAAATCTCACCCATCCTGAGAGCAAGGGGGCGGGGTTCTTGGAGCCCACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp CATGAGGGTCTTGTCCACTTAGCGCGTCCCCTCGGGTCGTGGCCTGCGCTGACCCCCAGCCCACCAGGCTaGCATCAGTCAGCACCTCGA +
Preference number: 4 (lower is better)
Translates to: HEGLVHLARPLGSWPALTPSPPG*HQSAPR
Trigger: TCGAGGTGCTGACTGATGGCAGCCTGGTGGGCTGGG...GGTCAGCGCAGGCCACGACCCGAGGGGACGCGCTAAGTGGACAAGACCCTCATG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGTGGGCTCCAAGAACCCCGCCCCCTTGCTCTCAGGATGGGTGAGATTTGGGCGGTCAGCGCTCCTCGATaGTCCCAGCCCACCAGGCTG +
Preference number: 4 (lower is better)
Translates to: GGLQEPRPLALRMGEIWAVSAPR*SQPTRL
Trigger: CAGCCTGGTGGGCTGGGAGCATCGAGGAGCGCTGAC...CGCCCAAATCTCACCCATCCTGAGAGCAAGGGGGCGGGGTTCTTGGAGCCCACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp CCTAGAGGTGTGTCTGGGGCTAGGGAGCTGCACAGTGATGTGAGGGCCATGGCCGGCTCGGCCGGCTCTTaGTCGCGCACGATGGCGAAG +
Preference number: 4 (lower is better)
Translates to: PRGVSGARELHSDVRAMAGSAGS*SRTMAK
Trigger: CTTCGCCATCGTGCGCGAGCAAGAGCCGGCCGAGCC...GGCCATGGCCCTCACATCACTGTGCAGCTCCCTAGCCCCAGACACACCTCTAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGGTTTCTGTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTAGGGGCGGCCCCCAATaGGCAGCGTGCGGACAGCGG +
Preference number: 4 (lower is better)
Translates to: GFLCGGAKVWSHSLAYASRGGPQ*AACGQR
Trigger: CCGCTGTCCGCACGCTGCGCATTGGGGGCCGCCCCT...AGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACACAGAAACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp CATGAGGGTCTTGTCCACTTAGCGCGTCCCCTCGGGTCGTGGCCTGCGCTGACCCGGGGCGTTTGCCCGTaGCCAGGCTTCGGTTATAGC +
Preference number: 4 (lower is better)
Translates to: HEGLVHLARPLGSWPALTRGVCP*PGFGYS
Trigger: GCTATAACCGAAGCCTGGCCACGGGCAAACGCCCCG...GGTCAGCGCAGGCCACGACCCGAGGGGACGCGCTAAGTGGACAAGACCCTCATG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp AAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTCCAAACTTCAGGGGTaGGTATTGCTCCTGGGGCCG +
Preference number: 4 (lower is better)
Translates to: KGVGRRTLLQARSSQVRFSKLQG*VLLLGP
Trigger: CGGCCCCAGGAGCAATACCCACCCCTGAAGTTTGGA...GAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTGCAAGGAGAGGCCCATaGCCACGAGGAGCATGTAGA +
Preference number: 4 (lower is better)
Translates to: GVGRRTLLQARSSQVRFCARRGP*PRGACR
Trigger: TCTACATGCTCCTCGTGGCCATGGGCCTCTCCTTGC...ACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp CATGAGGGTCTTGTCCACTTAGCGCGTCCCCTCGGGTCGTGGCCTGCGCTGACCTGCGAGCAGCTGAGATaGCGTGGTGGCGGTAGCAGC +
Preference number: 4 (lower is better)
Translates to: HEGLVHLARPLGSWPALTCEQLR*RGGGSS
Trigger: GCTGCTACCGCCACCACGCCATCTCAGCTGCTCGCA...GGTCAGCGCAGGCCACGACCCGAGGGGACGCGCTAAGTGGACAAGACCCTCATG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp GCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCCTTCCCAGTTGTGGCAGATCCCTaGAAGCCACAGCCGCTCCAG +
Preference number: 4 (lower is better)
Translates to: AQDAAPGEVQPGPFLSFPVVADP*KPQPLQ
Trigger: CTGGAGCGGCTGTGGCTTTCAGGGATCTGCCACAAC...TGGGAAGGACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGCTCCAAGAACCCCGCCCCCTTGCTCTCAGGATGGGTGAGATTTGGGCGACCGGCCAGCAGAGCGCACTaGAAACAGCCCAGCAGGCAG +
Preference number: 4 (lower is better)
Translates to: GSKNPAPLLSGWVRFGRPASRAH*KQPSRQ
Trigger: CTGCCTGCTGGGCTGTTTGCAGTGCGCTCTGCTGGC...CGGTCGCCCAAATCTCACCCATCCTGAGAGCAAGGGGGCGGGGTTCTTGGAGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp AGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCCTTCCCAACCCGTGGGCCCCAGACAGTaGCGCAGTCGCCAGTACACA +
Preference number: 4 (lower is better)
Translates to: RTLLQARSSQVRFCPSQPVGPRQ*RSRQYT
Trigger: TGTGTACTGGCGACTGCGGCACTGTCTGGGGCCCAC...GGGTTGGGAAGGACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCCTTCCCAGAGCAGCCTCAGCGCTaGAGCAGCTGTACATACCCC +
Preference number: 4 (lower is better)
Translates to: AQDAAPGEVQPGPFLSFPEQPQR*SSCTYP
Trigger: GGGGTATGTACAGCTGCTGCAGCGCTGAGGCTGCTC...TGGGAAGGACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp CATGAGGGTCTTGTCCACTTAGCGCGTCCCCTCGGGTCGTGGCCTGCGCTGACCGAGCAGCCTCAGCGCTaGAGCAGCTGTACATACCCC +
Preference number: 4 (lower is better)
Translates to: HEGLVHLARPLGSWPALTEQPQR*SSCTYP
Trigger: GGGGTATGTACAGCTGCTGCAGCGCTGAGGCTGCTC...GGTCAGCGCAGGCCACGACCCGAGGGGACGCGCTAAGTGGACAAGACCCTCATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp CCAACCCATGAGGGTCTTGTCCACTTAGCGCGTCCCCTCGGGTCGTGGCCTGCGCAGTGGGGCACCTCCTaGCAGAAGAAGTGGTTCCCC +
Preference number: 4 (lower is better)
Translates to: PTHEGLVHLARPLGSWPAQWGTS*QKKWFP
Trigger: GGGGAACCACTTCTTCTGCCAGGAGGTGCCCCACTG...CGCAGGCCACGACCCGAGGGGACGCGCTAAGTGGACAAGACCCTCATGGGTTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGTGGGCTCCAAGAACCCCGCCCCCTTGCTCTCAGGATGGGTGAGATTTGGGCGTCAGGCGGAGGGCTGTaGGTACGGTTGAGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: GGLQEPRPLALRMGEIWASGGGL*VRLSWL
Trigger: GAGCCAGCTCAACCGTACCCACAGCCCTCCGCCTGA...CGCCCAAATCTCACCCATCCTGAGAGCAAGGGGGCGGGGTTCTTGGAGCCCACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGGTTTCTGTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTGGGCTGTGTGGTGGGTaGGGACAGTGGGCGTCCGGC +
Preference number: 4 (lower is better)
Translates to: GFLCGGAKVWSHSLAYASGLCGG*GQWASG
Trigger: GCCGGACGCCCACTGTCCCCACCCACCACACAGCCC...AGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACACAGAAACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGTGGGCTCCAAGAACCCCGCCCCCTTGCTCTCAGGATGGGTGAGATTTGGGCGAGGTGGTGGCTTCTGTaGGGGCTGTGTGGTGGGTGG +
Preference number: 4 (lower is better)
Translates to: GGLQEPRPLALRMGEIWARWWLL*GLCGGW
Trigger: CCACCCACCACACAGCCCCCACAGAAGCCACCACCT...CGCCCAAATCTCACCCATCCTGAGAGCAAGGGGGCGGGGTTCTTGGAGCCCACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCGAAGTAGGAAGGTGGTaGCTTCTGTGGGGGCTGTGT +
Preference number: 4 (lower is better)
Translates to: GWGAGRCSRRGPARSVSVEVGRW*LLWGLC
Trigger: ACACAGCCCCCACAGAAGCCACCACCTTCCTACTTC...GACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTCACAGTTTCGTGGGGGCCGCCCGTaGGCAGGAGCTCAGGTCCTC +
Preference number: 4 (lower is better)
Translates to: VWRGQGLESQFGIRVSQFRGGRP*AGAQVL
Trigger: GAGGACCTGAGCTCCTGCCCACGGGCGGCCCCCACG...AAACTGTGAGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGCTCCAAGAACCCCGCCCCCTTGCTCTCAGGATGGGTGAGATTTGGGCGACCGATGGGCAGCGAGGTCTaGGCCGACAGGAAGTCGAGA +
Preference number: 4 (lower is better)
Translates to: GSKNPAPLLSGWVRFGRPMGSEV*ADRKSR
Trigger: TCTCGACTTCCTGTCGGCGCAGACCTCGCTGCCCAT...CGGTCGCCCAAATCTCACCCATCCTGAGAGCAAGGGGGCGGGGTTCTTGGAGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGTGGGCTCCAAGAACCCCGCCCCCTTGCTCTCAGGATGGGTGAGATTTGGGCGGTGGAGGAGCCAAGCTaGAGGAAGGTGGAGCCCTTC +
Preference number: 4 (lower is better)
Translates to: GGLQEPRPLALRMGEIWAVEEPS*RKVEPF
Trigger: GAAGGGCTCCACCTTCCTGCAGCTTGGCTCCTCCAC...CGCCCAAATCTCACCCATCCTGAGAGCAAGGGGGCGGGGTTCTTGGAGCCCACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp AGGCAAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGACCTCAAAAATGACCTaGAGCTGTTGCTCTGTGGAG +
Preference number: 4 (lower is better)
Translates to: RQGGGAQDAAPGEVQPGPTSKMT*SCCSVE
Trigger: CTCCACAGAGCAACAGCTGCAGGTCATTTTTGAGGT...CGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTTGCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp CCTAGAGGTGTGTCTGGGGCTAGGGAGCTGCACAGTGATGTGAGGGCCATGGCCCCCAGCCCACCAGGCTaGCATCAGTCAGCACCTCGA +
Preference number: 4 (lower is better)
Translates to: PRGVSGARELHSDVRAMAPSPPG*HQSAPR
Trigger: TCGAGGTGCTGACTGATGGCAGCCTGGTGGGCTGGG...GGCCATGGCCCTCACATCACTGTGCAGCTCCCTAGCCCCAGACACACCTCTAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCAATGCAGAAACCCTTaGAGCATCTCTTCTCCGGGC +
Preference number: 4 (lower is better)
Translates to: GVGRRTLLQARSSQVRFCQCRNP*SISSPG
Trigger: GCCCGGAGAAGAGATGCTGCAAGGGTTTCTGCATTG...ACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGTGGGCTCCAAGAACCCCGCCCCCTTGCTCTCAGGATGGGTGAGATTTGGGCGGGCGTCCAGTTTCCCTaGCTTGAGCTGAGTGAGCGC +
Preference number: 4 (lower is better)
Translates to: GGLQEPRPLALRMGEIWAGVQFP*LELSER
Trigger: GCGCTCACTCAGCTCAAGGCAGGGAAACTGGACGCC...CGCCCAAATCTCACCCATCCTGAGAGCAAGGGGGCGGGGTTCTTGGAGCCCACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGGTTTCTGTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTACAGGAAGTCGAGAATaGGCGCGACGGCGGGCGCGC +
Preference number: 4 (lower is better)
Translates to: GFLCGGAKVWSHSLAYASTGSRE*ARRRAR
Trigger: GCGCGCCCGCCGTCGCGCCCATTCTCGACTTCCTGT...AGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACACAGAAACCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp CCTAGAGGTGTGTCTGGGGCTAGGGAGCTGCACAGTGATGTGAGGGCCATGGCCAATCCATGCGGTGGGTaGGCCCCAGACAGTGCCGCA +
Preference number: 4 (lower is better)
Translates to: PRGVSGARELHSDVRAMANPCGG*APDSAA
Trigger: TGCGGCACTGTCTGGGGCCCACCCACCGCATGGATT...GGCCATGGCCCTCACATCACTGTGCAGCTCCCTAGCCCCAGACACACCTCTAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTCACAGTTTTCCAGGCTGGCGCAGTaGCGGCAGTGCCATGCGGGG +
Preference number: 4 (lower is better)
Translates to: VWRGQGLESQFGIRVSQFSRLAQ*RQCHAG
Trigger: CCCCGCATGGCACTGCCGCCACTGCGCCAGCCTGGA...AAACTGTGAGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp GGGTTTCTGTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTCCACCTCCGGCCAGCTaGGGTCCCACCATGAACCAG +
Preference number: 4 (lower is better)
Translates to: GFLCGGAKVWSHSLAYASPPPAS*GPTMNQ
Trigger: CTGGTTCATGGTGGGACCTCAGCTGGCCGGAGGTGG...AGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACACAGAAACCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp CCTAGAGGTGTGTCTGGGGCTAGGGAGCTGCACAGTGATGTGAGGGCCATGGCCCCAGTAGGAAATCCATaGGGTGGGTGGGCCCCAGAC +
Preference number: 4 (lower is better)
Translates to: PRGVSGARELHSDVRAMAPVGNP*GGWAPD
Trigger: GTCTGGGGCCCACCCACCGCATGGATTTCCTACTGG...GGCCATGGCCCTCACATCACTGTGCAGCTCCCTAGCCCCAGACACACCTCTAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp AGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCCTTCCCAACCCGCAGCTGTTGCTCTGTaGAGGAGCCAAGCTGCAGGA +
Preference number: 4 (lower is better)
Translates to: RTLLQARSSQVRFCPSQPAAVAL*RSQAAG
Trigger: TCCTGCAGCTTGGCTCCTCCACAGAGCAACAGCTGC...GGGTTGGGAAGGACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGGTTTCTGTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTAGACTCTCCCCGCGGTaGGTGCGATTCTGGGCGCGA +
Preference number: 4 (lower is better)
Translates to: GFLCGGAKVWSHSLAYASRLSPR*VRFWAR
Trigger: TCGCGCCCAGAATCGCACCCACCGCGGGGAGAGTCT...AGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACACAGAAACCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGCTCCAAGAACCCCGCCCCCTTGCTCTCAGGATGGGTGAGATTTGGGCGACCGTCCAAACTTCAGGGGTaGGTATTGCTCCTGGGGCCG +
Preference number: 4 (lower is better)
Translates to: GSKNPAPLLSGWVRFGRPSKLQG*VLLLGP
Trigger: CGGCCCCAGGAGCAATACCCACCCCTGAAGTTTGGA...CGGTCGCCCAAATCTCACCCATCCTGAGAGCAAGGGGGCGGGGTTCTTGGAGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTACCTCAAAAATGACCTaGAGCTGTTGCTCTGTGGAG +
Preference number: 4 (lower is better)
Translates to: GVGRRTLLQARSSQVRFCTSKMT*SCCSVE
Trigger: CTCCACAGAGCAACAGCTGCAGGTCATTTTTGAGGT...ACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGGTTTCTGTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTTCCAGGCTGGAGAAGTaGGCAGAGCCCCTGCGTGTG +
Preference number: 4 (lower is better)
Translates to: GFLCGGAKVWSHSLAYASSRLEK*AEPLRV
Trigger: CACACGCAGGGGCTCTGCGCACTTCTCCAGCCTGGA...AGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACACAGAAACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCTCGATTTTGTCGTTGTaGCAGATCCCTGAAAGCCAC +
Preference number: 4 (lower is better)
Translates to: GWGAGRCSRRGPARSVSVSILSL*QIPESH
Trigger: GTGGCTTTCAGGGATCTGCCACAACGACAAAATCGA...GACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp GCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCCTTCCCACTGCAGGCTCTACAATaGCAAAAGGTCTCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: AQDAAPGEVQPGPFLSFPLQALQ*QKVSPP
Trigger: TGGAGGAGAGACCTTTTGTCATTGTAGAGCCTGCAG...TGGGAAGGACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp AGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCCTTCCCAACCCTTCGGGCCATGTAGTTaGGCACTGCTGCGTCATAGA +
Preference number: 4 (lower is better)
Translates to: RTLLQARSSQVRFCPSQPFGPCS*ALLRHR
Trigger: TCTATGACGCAGCAGTGCTCAACTACATGGCCCGAA...GGGTTGGGAAGGACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp CCTAGAGGTGTGTCTGGGGCTAGGGAGCTGCACAGTGATGTGAGGGCCATGGCCGGCACGCGTAGTCACTaGCACAAAGGATGTCCAGTC +
Preference number: 4 (lower is better)
Translates to: PRGVSGARELHSDVRAMAGTRSH*HKGCPV
Trigger: GACTGGACATCCTTTGTGGCAGTGACTACGCGTGCC...GGCCATGGCCCTCACATCACTGTGCAGCTCCCTAGCCCCAGACACACCTCTAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTCACAGTTTCCGTCTAGGCCGTCGTaGGAGCAGCTGAGATGGCGT +
Preference number: 4 (lower is better)
Translates to: VWRGQGLESQFGIRVSQFPSRPS*EQLRWR
Trigger: ACGCCATCTCAGCTGCTCGCACGACGGCCTAGACGG...AAACTGTGAGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGGTTTCTGTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTCAGTGGGGCACCTCCTaGCAGAAGAAGTGGTTCCCC +
Preference number: 4 (lower is better)
Translates to: GFLCGGAKVWSHSLAYASQWGTS*QKKWFP
Trigger: GGGGAACCACTTCTTCTGCCAGGAGGTGCCCCACTG...AGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACACAGAAACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTCACAGTTTGGTGGGTATTGCTCCTaGGGCCGCTGGAACTTCCGG +
Preference number: 4 (lower is better)
Translates to: VWRGQGLESQFGIRVSQFGGYCS*GRWNFR
Trigger: CCGGAAGTTCCAGCGGCCCCAGGAGCAATACCCACC...AAACTGTGAGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp AGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCCTTCCCAACCCACACCTCACCAATCATaGCATTCCAGACGCCATCGA +
Preference number: 4 (lower is better)
Translates to: RTLLQARSSQVRFCPSQPTPHQS*HSRRHR
Trigger: TCGATGGCGTCTGGAATGGCATGATTGGTGAGGTGT...GGGTTGGGAAGGACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGGTTTCTGTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTGCAGCTGTTGCTCTGTaGAGGAGCCAAGCTGCAGGA +
Preference number: 4 (lower is better)
Translates to: GFLCGGAKVWSHSLAYASAAVAL*RSQAAG
Trigger: TCCTGCAGCTTGGCTCCTCCACAGAGCAACAGCTGC...AGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACACAGAAACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp AGGTCTGGAGTCACAGTTTGGCATACGCGTCTCACAGTTTTGAGTCCTGATGAACGGGATACGCCGGACTaGGCAGCGGCTGCGGCGGTG +
Preference number: 4 (lower is better)
Translates to: RSGVTVWHTRLTVLSPDERDTPD*AAAAAV
Trigger: CACCGCCGCAGCCGCTGCCCAGTCCGGCGTATCCCG...TTCATCAGGACTCAAAACTGTGAGACGCGTATGCCAAACTGTGACTCCAGACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTCACAGTTTGGCGAAGTAGGAAGGTaGTGGCTTCTGTGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: VWRGQGLESQFGIRVSQFGEVGR*WLLWGL
Trigger: CAGCCCCCACAGAAGCCACCACCTTCCTACTTCGCC...AAACTGTGAGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp CCAACCCATGAGGGTCTTGTCCACTTAGCGCGTCCCCTCGGGTCGTGGCCTGCGGAAAGCCATCCTCATTaGAGGAGTAGTCTCGGTTAT +
Preference number: 4 (lower is better)
Translates to: PTHEGLVHLARPLGSWPAESHPH*RSSLGY
Trigger: ATAACCGAGACTACTCCTTCAATGAGGATGGCTTTC...CGCAGGCCACGACCCGAGGGGACGCGCTAAGTGGACAAGACCCTCATGGGTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp TGGAGTGTCTGCTGGATTATCACTGAAGGGTCACAAATAAGGGCTGGACTTGAAAGGGGCGGCCCCCAATaGGCAGCGTGCGGACAGCGG +
Preference number: 4 (lower is better)
Translates to: WSVCWIITEGSQIRAGLERGGPQ*AACGQR
Trigger: CCGCTGTCCGCACGCTGCGCATTGGGGGCCGCCCCT...TTCAAGTCCAGCCCTTATTTGTGACCCTTCAGTGATAATCCAGCAGACACTCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
CDS-3UTR CCA 90 bp ATCACTGAAGGGTCACAAATAAGGGCTGGACTTGAAGATGTGATTGGTGGCATCCCTCCGGGAACGGGCTaGCGCACGCCAGCGCCAGCA +
Preference number: 4 (lower is better)
Translates to: ITEGSQIRAGLEDVIGGIPPGTG*RTPAPA
Trigger: TGCTGGCGCTGGCGTGCGCCAGCCCGTTCCCGGAGG...GATGCCACCAATCACATCTTCAAGTCCAGCCCTTATTTGTGACCCTTCAGTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
CDS-3UTR CCA 90 bp AGGTCTGGAGTCACAGTTTGGCATACGCGTCTCACAGTTTTGAGTCCTGATGAAGGGCCTGGGCACCTCTaGCCACCACCGCCACACCAG +
Preference number: 4 (lower is better)
Translates to: RSGVTVWHTRLTVLSPDEGPGHL*PPPPHQ
Trigger: CTGGTGTGGCGGTGGTGGCCAGAGGTGCCCAGGCCC...TTCATCAGGACTCAAAACTGTGAGACGCGTATGCCAAACTGTGACTCCAGACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp AGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCCTTCCCAACCCAGCTGTACATACCCCTaGAGAAGGCCAGTAGGAAAT +
Preference number: 4 (lower is better)
Translates to: RTLLQARSSQVRFCPSQPSCTYP*RRPVGN
Trigger: ATTTCCTACTGGCCTTCTCCAGGGGTATGTACAGCT...GGGTTGGGAAGGACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGGTGGAGTGTCTGCTGGATTATCACTGAAGGGTCACAAATAAGGGCTGGACTTTCCGGTGAGATGCGGTaGGCAGGGGCGGCCCCCAAT +
Preference number: 4 (lower is better)
Translates to: GWSVCWIITEGSQIRAGLSGEMR*AGAAPN
Trigger: ATTGGGGGCCGCCCCTGCCCACCGCATCTCACCGGA...AAGTCCAGCCCTTATTTGTGACCCTTCAGTGATAATCCAGCAGACACTCCACCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
CDS-3UTR GCA 90 bp GTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTCACAGTTTATGACCTGCAGCTGTTaGTCTGTGGAGGAGCCAAGC +
Preference number: 4 (lower is better)
Translates to: VWRGQGLESQFGIRVSQFMTCSC*SVEEPS
Trigger: GCTTGGCTCCTCCACAGAGCAACAGCTGCAGGTCAT...AAACTGTGAGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp ATCACTGAAGGGTCACAAATAAGGGCTGGACTTGAAGATGTGATTGGTGGCATCCCTTCTCCTTGGGTGTaGGTACGAGCGCGGCGCCGC +
Preference number: 4 (lower is better)
Translates to: ITEGSQIRAGLEDVIGGIPSPWV*VRARRR
Trigger: GCGGCGCCGCGCTCGTACTCACACCCAAGGAGAAGG...GATGCCACCAATCACATCTTCAAGTCCAGCCCTTATTTGTGACCCTTCAGTGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
CDS-3UTR TCA 90 bp CCTAGAGGTGTGTCTGGGGCTAGGGAGCTGCACAGTGATGTGAGGGCCATGGCCGAAAGCCATCCTCATTaGAGGAGTAGTCTCGGTTAT +
Preference number: 4 (lower is better)
Translates to: PRGVSGARELHSDVRAMAESHPH*RSSLGY
Trigger: ATAACCGAGACTACTCCTTCAATGAGGATGGCTTTC...GGCCATGGCCCTCACATCACTGTGCAGCTCCCTAGCCCCAGACACACCTCTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp GTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTCACAGTTTTTCGGGCCATGTAGTTaGGCACTGCTGCGTCATAGA +
Preference number: 4 (lower is better)
Translates to: VWRGQGLESQFGIRVSQFFGPCS*ALLRHR
Trigger: TCTATGACGCAGCAGTGCTCAACTACATGGCCCGAA...AAACTGTGAGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp GGGTGGAGTGTCTGCTGGATTATCACTGAAGGGTCACAAATAAGGGCTGGACTTGTGGGCCCCAGACAGTaGCGCAGTCGCCAGTACACA +
Preference number: 4 (lower is better)
Translates to: GWSVCWIITEGSQIRAGLVGPRQ*RSRQYT
Trigger: TGTGTACTGGCGACTGCGGCACTGTCTGGGGCCCAC...AAGTCCAGCCCTTATTTGTGACCCTTCAGTGATAATCCAGCAGACACTCCACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
CDS-3UTR CCA 90 bp GTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTCACAGTTTGGATATTCTTCTCCGTaGACCCATTGGGCACCGTTC +
Preference number: 4 (lower is better)
Translates to: VWRGQGLESQFGIRVSQFGYSSP*THWAPF
Trigger: GAACGGTGCCCAATGGGTCCACGGAGAAGAATATCC...AAACTGTGAGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGAGGCGTAAAAACATGGTTTTATTCCAAACACTGCAGTGTAGGAGCGGGAGAGCCTCGGACTCCAGGCTaGAGAAGTGCGCAGAGCCCC +
Preference number: 4 (lower is better)
Translates to: GGVKTWFYSKHCSVGAGEPRTPG*RSAQSP
Trigger: GGGGCTCTGCGCACTTCTCCAGCCTGGAGTCCGAGG...CTCTCCCGCTCCTACACTGCAGTGTTTGGAATAAAACCATGTTTTTACGCCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
CDS-3UTR CCA 90 bp AGGTCTGGAGTCACAGTTTGGCATACGCGTCTCACAGTTTTGAGTCCTGATGAACCTCGGACTCCAGGCTaGAGAAGTGCGCAGAGCCCC +
Preference number: 4 (lower is better)
Translates to: RSGVTVWHTRLTVLSPDEPRTPG*RSAQSP
Trigger: GGGGCTCTGCGCACTTCTCCAGCCTGGAGTCCGAGG...TTCATCAGGACTCAAAACTGTGAGACGCGTATGCCAAACTGTGACTCCAGACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp ATCACTGAAGGGTCACAAATAAGGGCTGGACTTGAAGATGTGATTGGTGGCATCCGTCGTGCGAGCAGCTaGGATGGCGTGGTGGCGGTA +
Preference number: 4 (lower is better)
Translates to: ITEGSQIRAGLEDVIGGIRRASS*DGVVAV
Trigger: TACCGCCACCACGCCATCTCAGCTGCTCGCACGACG...GATGCCACCAATCACATCTTCAAGTCCAGCCCTTATTTGTGACCCTTCAGTGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
CDS-3UTR CCA 90 bp GGAGGCGTAAAAACATGGTTTTATTCCAAACACTGCAGTGTAGGAGCGGGAGAGTGGGTACGGTTGAGCTaGCTCCGGCAGGGAACCGAG +
Preference number: 4 (lower is better)
Translates to: GGVKTWFYSKHCSVGAGEWVRLS*LRQGTE
Trigger: CTCGGTTCCCTGCCGGAGCCAGCTCAACCGTACCCA...CTCTCCCGCTCCTACACTGCAGTGTTTGGAATAAAACCATGTTTTTACGCCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
CDS-3UTR CCA 90 bp AGGTCTGGAGTCACAGTTTGGCATACGCGTCTCACAGTTTTGAGTCCTGATGAATCAGGCGGAGGGCTGTaGGTACGGTTGAGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: RSGVTVWHTRLTVLSPDESGGGL*VRLSWL
Trigger: GAGCCAGCTCAACCGTACCCACAGCCCTCCGCCTGA...TTCATCAGGACTCAAAACTGTGAGACGCGTATGCCAAACTGTGACTCCAGACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp GGGTTTCTGTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTAGCTGTACATACCCCTaGAGAAGGCCAGTAGGAAAT +
Preference number: 4 (lower is better)
Translates to: GFLCGGAKVWSHSLAYASSCTYP*RRPVGN
Trigger: ATTTCCTACTGGCCTTCTCCAGGGGTATGTACAGCT...AGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACACAGAAACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp TGGAGTGTCTGCTGGATTATCACTGAAGGGTCACAAATAAGGGCTGGACTTGAATGGGCGCGACAGTCATaGCCCAGCTCAGGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: WSVCWIITEGSQIRAGLEWARQS*PSSGRK
Trigger: CTTCCTGCCTGAGCTGGGCCATGACTGTCGCGCCCA...TTCAAGTCCAGCCCTTATTTGTGACCCTTCAGTGATAATCCAGCAGACACTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
CDS-3UTR CCA 90 bp GTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTCACAGTTTTCGATTTTGTCGTTGTaGCAGATCCCTGAAAGCCAC +
Preference number: 4 (lower is better)
Translates to: VWRGQGLESQFGIRVSQFSILSL*QIPESH
Trigger: GTGGCTTTCAGGGATCTGCCACAACGACAAAATCGA...AAACTGTGAGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp ATCACTGAAGGGTCACAAATAAGGGCTGGACTTGAAGATGTGATTGGTGGCATCAGGTGGTGGCTTCTGTaGGGGCTGTGTGGTGGGTGG +
Preference number: 4 (lower is better)
Translates to: ITEGSQIRAGLEDVIGGIRWWLL*GLCGGW
Trigger: CCACCCACCACACAGCCCCCACAGAAGCCACCACCT...GATGCCACCAATCACATCTTCAAGTCCAGCCCTTATTTGTGACCCTTCAGTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
CDS-3UTR CCA 90 bp GGAGGCGTAAAAACATGGTTTTATTCCAAACACTGCAGTGTAGGAGCGGGAGAGGCAAGGAGAGGCCCATaGCCACGAGGAGCATGTAGA +
Preference number: 4 (lower is better)
Translates to: GGVKTWFYSKHCSVGAGEARRGP*PRGACR
Trigger: TCTACATGCTCCTCGTGGCCATGGGCCTCTCCTTGC...CTCTCCCGCTCCTACACTGCAGTGTTTGGAATAAAACCATGTTTTTACGCCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
CDS-3UTR CCA 90 bp ATCACTGAAGGGTCACAAATAAGGGCTGGACTTGAAGATGTGATTGGTGGCATCAGGAAATCCATGCGGTaGGTGGGCCCCAGACAGTGC +
Preference number: 4 (lower is better)
Translates to: ITEGSQIRAGLEDVIGGIRKSMR*VGPRQC
Trigger: GCACTGTCTGGGGCCCACCCACCGCATGGATTTCCT...GATGCCACCAATCACATCTTCAAGTCCAGCCCTTATTTGTGACCCTTCAGTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
CDS-3UTR CCA 90 bp GGGTGGAGTGTCTGCTGGATTATCACTGAAGGGTCACAAATAAGGGCTGGACTTGAAGTAGGAAGGTGGTaGCTTCTGTGGGGGCTGTGT +
Preference number: 4 (lower is better)
Translates to: GWSVCWIITEGSQIRAGLEVGRW*LLWGLC
Trigger: ACACAGCCCCCACAGAAGCCACCACCTTCCTACTTC...AAGTCCAGCCCTTATTTGTGACCCTTCAGTGATAATCCAGCAGACACTCCACCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
CDS-3UTR GCA 90 bp AGGTCTGGAGTCACAGTTTGGCATACGCGTCTCACAGTTTTGAGTCCTGATGAAATGACCTGCAGCTGTTaGTCTGTGGAGGAGCCAAGC +
Preference number: 4 (lower is better)
Translates to: RSGVTVWHTRLTVLSPDEMTCSC*SVEEPS
Trigger: GCTTGGCTCCTCCACAGAGCAACAGCTGCAGGTCAT...TTCATCAGGACTCAAAACTGTGAGACGCGTATGCCAAACTGTGACTCCAGACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CCA 90 bp TGGAGTGTCTGCTGGATTATCACTGAAGGGTCACAAATAAGGGCTGGACTTGAACAAGCTGCAGGAAGGTaGAGCCCTTCTCCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: WSVCWIITEGSQIRAGLEQAAGR*SPSPWV
Trigger: CACCCAAGGAGAAGGGCTCCACCTTCCTGCAGCTTG...TTCAAGTCCAGCCCTTATTTGTGACCCTTCAGTGATAATCCAGCAGACACTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
CDS-3UTR GCA 90 bp TGGAGTGTCTGCTGGATTATCACTGAAGGGTCACAAATAAGGGCTGGACTTGAAGGCACGCGTAGTCACTaGCACAAAGGATGTCCAGTC +
Preference number: 4 (lower is better)
Translates to: WSVCWIITEGSQIRAGLEGTRSH*HKGCPV
Trigger: GACTGGACATCCTTTGTGGCAGTGACTACGCGTGCC...TTCAAGTCCAGCCCTTATTTGTGACCCTTCAGTGATAATCCAGCAGACACTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
CDS-3UTR CCA 90 bp AGGTCTGGAGTCACAGTTTGGCATACGCGTCTCACAGTTTTGAGTCCTGATGAAGGATATTCTTCTCCGTaGACCCATTGGGCACCGTTC +
Preference number: 4 (lower is better)
Translates to: RSGVTVWHTRLTVLSPDEGYSSP*THWAPF
Trigger: GAACGGTGCCCAATGGGTCCACGGAGAAGAATATCC...TTCATCAGGACTCAAAACTGTGAGACGCGTATGCCAAACTGTGACTCCAGACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR TCA 90 bp AGGTCTGGAGTCACAGTTTGGCATACGCGTCTCACAGTTTTGAGTCCTGATGAACTGCAGGCTCTACAATaGCAAAAGGTCTCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: RSGVTVWHTRLTVLSPDELQALQ*QKVSPP
Trigger: TGGAGGAGAGACCTTTTGTCATTGTAGAGCCTGCAG...TTCATCAGGACTCAAAACTGTGAGACGCGTATGCCAAACTGTGACTCCAGACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR GCA 90 bp TGGAGTGTCTGCTGGATTATCACTGAAGGGTCACAAATAAGGGCTGGACTTGAACAATGCAGAAACCCTTaGAGCATCTCTTCTCCGGGC +
Preference number: 4 (lower is better)
Translates to: WSVCWIITEGSQIRAGLEQCRNP*SISSPG
Trigger: GCCCGGAGAAGAGATGCTGCAAGGGTTTCTGCATTG...TTCAAGTCCAGCCCTTATTTGTGACCCTTCAGTGATAATCCAGCAGACACTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
CDS GCA 90 bp CCAGGGGGTGGGCGAGCGGCGGGATACGCCGGACTGGGCAGCGGCTaGGGCGGTGGCGGGGGTTTGGCCGGCGGCGGAGCAGCCTCAGCG +
Preference number: 5 (lower is better)
Translates to: PGGGRAAGYAGLGSG*GGGGGLAGGGAASA
Trigger: CGCTGAGGCTGCTCCGCCGCCGGCCAAACCCCCGCCACCGCCGCAGCCGCTGCCCAGTCCGGCGTATCCCGCCGCTCGCCCACCCCCTGG
80% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CCA 90 bp CGCGTGGCGCGAGGGCCCGGTGAGCCTGCGCGTGGGGGCCGCCCGTaGGCAGGAGCTCAGGTCCTCCAGCGAACGCGAGGTGGGCGCGGG +
Preference number: 5 (lower is better)
Translates to: RVARGPGEPARGGRP*AGAQVLQRTRGGRG
Trigger: CCCGCGCCCACCTCGCGTTCGCTGGAGGACCTGAGCTCCTGCCCACGGGCGGCCCCCACGCGCAGGCTCACCGGGCCCTCGCGCCACGCG
80% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS TCA 90 bp AATGCGCAGCGTGCGGACAGCGGCGCGCGTGGCGCGAGGGCCCGGTaGGCCTGCGCGTGGGGGCCGCCCGTGGGCAGGAGCTCAGGTCCT +
Preference number: 5 (lower is better)
Translates to: NAQRADSGARGARAR*ACAWGPPVGRSSGP
Trigger: AGGACCTGAGCTCCTGCCCACGGGCGGCCCCCACGCGCAGGCTCACCGGGCCCTCGCGCCACGCGCGCCGCTGTCCGCACGCTGCGCATT
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 90 bp ACGAGCGCGGCGCCGCCGTGCACGGCCACGATGGGCAGCGAGGTCTaGGCCGACAGGAAGTCGAGAATGGGCGCGACGGCGGGCGCGCGC +
Preference number: 5 (lower is better)
Translates to: TSAAPPCTATMGSEV*ADRKSRMGATAGAR
Trigger: GCGCGCGCCCGCCGTCGCGCCCATTCTCGACTTCCTGTCGGCGCAGACCTCGCTGCCCATCGTGGCCGTGCACGGCGGCGCCGCGCTCGT
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CCA 90 bp TCGGTGCCGCGCGCGCCTCGCCGAGGCCCAGCCCCTGCGGCTCGATaGGGCCGTAGTATCGGTGGAAGCCGTCGGCTAGCGCTGCGCCCC +
Preference number: 5 (lower is better)
Translates to: SVPRAPRRGPAPAAR*GRSIGGSRRLALRP
Trigger: GGGGCGCAGCGCTAGCCGACGGCTTCCACCGATACTACGGCCCCATCGAGCCGCAGGGGCTGGGCCTCGGCGAGGCGCGCGCGGCACCGA
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 90 bp GGCGCGACGGCGGGCGCGCGCGAGTCGTCCTCGAACACCACGCCGTaGACGCGCAGCCCCGACAGCAGGTCGCAGAGCTGCAGCACAAGG +
Preference number: 5 (lower is better)
Translates to: GATAGARESSSNTTP*TRSPDSRSQSCSTR
Trigger: CCTTGTGCTGCAGCTCTGCGACCTGCTGTCGGGGCTGCGCGTGCACGGCGTGGTGTTCGAGGACGACTCGCGCGCGCCCGCCGTCGCGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CAA 90 bp AGGCAAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGGGGCTCGGCCGGCTCTaGCTCGCGCACGATGGCGAA +
Preference number: 5 (lower is better)
Translates to: RQGGGAQDAAPGEVQPGPGLGRL*LAHDGE
Trigger: TTCGCCATCGTGCGCGAGCAAGAGCCGGCCGAGCCC...CGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTTGCCT
73% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS TCA 90 bp GCAGGTCGCAGAGCTGCAGCACAAGGCTGCGAGGGTCGGAGCCGTTaGGCACCAGCGCCACGGGCCGTACGTCCAGGCCCGGGCTGCGCA +
Preference number: 5 (lower is better)
Translates to: AGRRAAAQGCEGRSR*APAPRAVRPGPGCA
Trigger: TGCGCAGCCCGGGCCTGGACGTACGGCCCGTGGCGCTGGTGCTCAACGGCTCCGACCCTCGCAGCCTTGTGCTGCAGCTCTGCGACCTGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS TCA 90 bp GCGGAGGCGCCCACCAGCCACCGTCTAGGCCGTCGTGCGAGCAGCTaGGATGGCGTGGTGGCGGTAGCAGCTCCAGGCTGGCGCAGTGGC +
Preference number: 5 (lower is better)
Translates to: AEAPTSHRLGRRASS*DGVVAVAAPGWRSG
Trigger: GCCACTGCGCCAGCCTGGAGCTGCTACCGCCACCACGCCATCTCAGCTGCTCGCACGACGGCCTAGACGGTGGCTGGTGGGCGCCTCCGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CCA 90 bp CGGCCACGATGGGCAGCGAGGTCTGCGCCGACAGGAAGTCGAGAATaGGCGCGACGGCGGGCGCGCGCGAGTCGTCCTCGAACACCACGC +
Preference number: 5 (lower is better)
Translates to: RPRWAARSAPTGSRE*ARRRARASRPRTPR
Trigger: GCGTGGTGTTCGAGGACGACTCGCGCGCGCCCGCCGTCGCGCCCATTCTCGACTTCCTGTCGGCGCAGACCTCGCTGCCCATCGTGGCCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CCA 90 bp GGCGCCCACCAGCCACCGTCTAGGCCGTCGTGCGAGCAGCTGAGATaGCGTGGTGGCGGTAGCAGCTCCAGGCTGGCGCAGTGGCGGCAG +
Preference number: 5 (lower is better)
Translates to: GAHQPPSRPSCEQLR*RGGGSSSRLAQWRQ
Trigger: CTGCCGCCACTGCGCCAGCCTGGAGCTGCTACCGCCACCACGCCATCTCAGCTGCTCGCACGACGGCCTAGACGGTGGCTGGTGGGCGCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS TCA 90 bp GCTCTGCCTCCTCGCGGGCGCAGAAGAGCAGGCGGATCTGCGCACTaGCACTACGGAGCTGTGCGCCCAGGACGGCCTCACCCGCTCCGG +
Preference number: 5 (lower is better)
Translates to: ALPPRGRRRAGGSAH*HYGAVRPGRPHPLR
Trigger: CCGGAGCGGGTGAGGCCGTCCTGGGCGCACAGCTCCGTAGTGTCAGTGCGCAGATCCGCCTGCTCTTCTGCGCCCGCGAGGAGGCAGAGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 90 bp CAGGGTGGAGGCGGAGGCGCCCACCAGCCACCGTCTAGGCCGTCGTaGGAGCAGCTGAGATGGCGTGGTGGCGGTAGCAGCTCCAGGCTG +
Preference number: 5 (lower is better)
Translates to: QGGGGGAHQPPSRPS*EQLRWRGGGSSSRL
Trigger: CAGCCTGGAGCTGCTACCGCCACCACGCCATCTCAGCTGCTCGCACGACGGCCTAGACGGTGGCTGGTGGGCGCCTCCGCCTCCACCCTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CAA 90 bp CCAACCCATGAGGGTCTTGTCCACTTAGCGCGTCCCCTCGGGTCGTGGCCTGCGAAGACCAGCGCCACGTaGAGCGGCCGCGCCCCGCCC +
Preference number: 5 (lower is better)
Translates to: PTHEGLVHLARPLGSWPAKTSAT*SGRAPP
Trigger: GGGCGGGGCGCGGCCGCTCAACGTGGCGCTGGTCTT...CGCAGGCCACGACCCGAGGGGACGCGCTAAGTGGACAAGACCCTCATGGGTTGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 90 bp AACACCACGCCGTGCACGCGCAGCCCCGACAGCAGGTCGCAGAGCTaGAGCACAAGGCTGCGAGGGTCGGAGCCGTTGAGCACCAGCGCC +
Preference number: 5 (lower is better)
Translates to: NTTPCTRSPDSRSQS*STRLRGSEPLSTSA
Trigger: GGCGCTGGTGCTCAACGGCTCCGACCCTCGCAGCCTTGTGCTGCAGCTCTGCGACCTGCTGTCGGGGCTGCGCGTGCACGGCGTGGTGTT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 90 bp GTGGAGCCCTTCTCCTTGGGTGTGAGTACGAGCGCGGCGCCGCCGTaGACGGCCACGATGGGCAGCGAGGTCTGCGCCGACAGGAAGTCG +
Preference number: 5 (lower is better)
Translates to: VEPFSLGVSTSAAPP*TATMGSEVCADRKS
Trigger: CGACTTCCTGTCGGCGCAGACCTCGCTGCCCATCGTGGCCGTGCACGGCGGCGCCGCGCTCGTACTCACACCCAAGGAGAAGGGCTCCAC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 90 bp GGCGCAGAAGAGCAGGCGGATCTGCGCACTGACACTACGGAGCTGTaGGCCCAGGACGGCCTCACCCGCTCCGGGGTCCAGTGTCAGCGC +
Preference number: 5 (lower is better)
Translates to: GAEEQADLRTDTTEL*AQDGLTRSGVQCQR
Trigger: GCGCTGACACTGGACCCCGGAGCGGGTGAGGCCGTCCTGGGCGCACAGCTCCGTAGTGTCAGTGCGCAGATCCGCCTGCTCTTCTGCGCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CAA 90 bp GGCTCCAAGAACCCCGCCCCCTTGCTCTCAGGATGGGTGAGATTTGGGCGACCGAAGACCAGCGCCACGTaGAGCGGCCGCGCCCCGCCC +
Preference number: 5 (lower is better)
Translates to: GSKNPAPLLSGWVRFGRPKTSAT*SGRAPP
Trigger: GGGCGGGGCGCGGCCGCTCAACGTGGCGCTGGTCTT...CGGTCGCCCAAATCTCACCCATCCTGAGAGCAAGGGGGCGGGGTTCTTGGAGCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CAA 90 bp GGTGGGCTCCAAGAACCCCGCCCCCTTGCTCTCAGGATGGGTGAGATTTGGGCGCGAGGGTCGGAGCCGTaGAGCACCAGCGCCACGGGC +
Preference number: 5 (lower is better)
Translates to: GGLQEPRPLALRMGEIWARGSEP*STSATG
Trigger: GCCCGTGGCGCTGGTGCTCAACGGCTCCGACCCTCG...CGCCCAAATCTCACCCATCCTGAGAGCAAGGGGGCGGGGTTCTTGGAGCCCACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CAA 90 bp GAGCTGCACAGTGATGTGAGGGCCATGGCCCGGAGCGTAGGGGTGGGGCGCGGCGGGGACACAGTGCCATaGCTGCGTGCCACCATGACG +
Preference number: 5 (lower is better)
Translates to: ELHSDVRAMARSVGVGRGGDTVP*LRATMT
Trigger: CGTCATGGTGGCACGCAGCAATGGCACTGTGTCCCC...GCCGCGCCCCACCCCTACGCTCCGGGCCATGGCCCTCACATCACTGTGCAGCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CAA 90 bp GGCAAGGGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTGCGCCTCCTCCACTCTaGGCTGGTTGTATCGCACCA +
Preference number: 5 (lower is better)
Translates to: GKGVGRRTLLQARSSQVRAPPPL*AGCIAP
Trigger: TGGTGCGATACAACCAGCCAAGAGTGGAGGAGGCGC...ACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCCCTTGCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 90 bp CTGGGCACCTCTGGCCACCACCGCCACACCAGCAGCCACTCGACGTaGCAAGTCGTCACGCCAGCCAGCAGAGCGCACTGCAAACAGCCC +
Preference number: 5 (lower is better)
Translates to: LGTSGHHRHTSSHST*QVVTPASRAHCKQP
Trigger: GGGCTGTTTGCAGTGCGCTCTGCTGGCTGGCGTGACGACTTGGCACGTCGAGTGGCTGCTGGTGTGGCGGTGGTGGCCAGAGGTGCCCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 90 bp AAAACAGGCTCTGCCTCCTCGCGGGCGCAGAAGAGCAGGCGGATCTaGGCACTGACACTACGGAGCTGTGCGCCCAGGACGGCCTCACCC +
Preference number: 5 (lower is better)
Translates to: KTGSASSRAQKSRRI*ALTLRSCAPRTASP
Trigger: GGGTGAGGCCGTCCTGGGCGCACAGCTCCGTAGTGTCAGTGCGCAGATCCGCCTGCTCTTCTGCGCCCGCGAGGAGGCAGAGCCTGTTTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 90 bp AGGCCCAGTGAGACCAGCCTCTTCTGCCGCCCGGAAAACAGGCTCTaGCTCCTCGCGGGCGCAGAAGAGCAGGCGGATCTGCGCACTGAC +
Preference number: 5 (lower is better)
Translates to: RPSETSLFCRPENRL*LLAGAEEQADLRTD
Trigger: GTCAGTGCGCAGATCCGCCTGCTCTTCTGCGCCCGCGAGGAGGCAGAGCCTGTTTTCCGGGCGGCAGAAGAGGCTGGTCTCACTGGGCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CAA 90 bp GCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCCTTCCCAGGGGACACAGTGCCATaGCTGCGTGCCACCATGACG +
Preference number: 5 (lower is better)
Translates to: AQDAAPGEVQPGPFLSFPGDTVP*LRATMT
Trigger: CGTCATGGTGGCACGCAGCAATGGCACTGTGTCCCC...TGGGAAGGACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 90 bp CACCATGAACCAGACGTAGCCAGGCCCAGTGAGACCAGCCTCTTCTaGCGCCCGGAAAACAGGCTCTGCCTCCTCGCGGGCGCAGAAGAG +
Preference number: 5 (lower is better)
Translates to: HHEPDVARPSETSLF*RPENRLCLLAGAEE
Trigger: CTCTTCTGCGCCCGCGAGGAGGCAGAGCCTGTTTTCCGGGCGGCAGAAGAGGCTGGTCTCACTGGGCCTGGCTACGTCTGGTTCATGGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CAA 90 bp GGGGTGGGGCGCAGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTTTCTCCGTGGACCCATaGGGCACCGTTCCAAACTTC +
Preference number: 5 (lower is better)
Translates to: GVGRRTLLQARSSQVRFCFSVDP*GTVPNF
Trigger: GAAGTTTGGAACGGTGCCCAATGGGTCCACGGAGAA...ACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCTGCGCCCCACCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CAA 90 bp AGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCCTTCCCAACCCGTGGTGGCGAAGACCTaGCCTGAGCCGATGGTGACC +
Preference number: 5 (lower is better)
Translates to: RTLLQARSSQVRFCPSQPVVAKT*PEPMVT
Trigger: GGTCACCATCGGCTCAGGCAAGGTCTTCGCCACCAC...GGGTTGGGAAGGACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CAA 90 bp GGGTTTCTGTGTGGCGGGGCCAAGGTCTGGAGTCACAGTTTGGCATACGCGTCTGGGCTCGGCCGGCTCTaGCTCGCGCACGATGGCGAA +
Preference number: 5 (lower is better)
Translates to: GFLCGGAKVWSHSLAYASGLGRL*LAHDGE
Trigger: TTCGCCATCGTGCGCGAGCAAGAGCCGGCCGAGCCC...AGACGCGTATGCCAAACTGTGACTCCAGACCTTGGCCCCGCCACACAGAAACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CAA 90 bp AGGACGCTGCTCCAGGCGAGGTCCAGCCAGGTCCGTTTCTGTCCTTCCCAACCCGCGCCTCCTCCACTCTaGGCTGGTTGTATCGCACCA +
Preference number: 5 (lower is better)
Translates to: RTLLQARSSQVRFCPSQPAPPPL*AGCIAP
Trigger: TGGTGCGATACAACCAGCCAAGAGTGGAGGAGGCGC...GGGTTGGGAAGGACAGAAACGGACCTGGCTGGACCTCGCCTGGAGCAGCGTCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 90 bp TGCAGCAGCTGTACATACCCCTGGAGAAGGCCAGTAGGAAATCCATaGGGTGGGTGGGCCCCAGACAGTGCCGCAGTCGCCAGTACACAA +
Preference number: 5 (lower is better)
Translates to: CSSCTYPWRRPVGNP*GGWAPDSAAVASTQ
Trigger: TTGTGTACTGGCGACTGCGGCACTGTCTGGGGCCCACCCACCGCATGGATTTCCTACTGGCCTTCTCCAGGGGTATGTACAGCTGCTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CCA 90 bp TGTACATACCCCTGGAGAAGGCCAGTAGGAAATCCATGCGGTGGGTaGGCCCCAGACAGTGCCGCAGTCGCCAGTACACAAGGTGTTCCC +
Preference number: 5 (lower is better)
Translates to: CTYPWRRPVGNPCGG*APDSAAVASTQGVP
Trigger: GGGAACACCTTGTGTACTGGCGACTGCGGCACTGTCTGGGGCCCACCCACCGCATGGATTTCCTACTGGCCTTCTCCAGGGGTATGTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CCA 90 bp CAGCTGTACATACCCCTGGAGAAGGCCAGTAGGAAATCCATGCGGTaGGTGGGCCCCAGACAGTGCCGCAGTCGCCAGTACACAAGGTGT +
Preference number: 5 (lower is better)
Translates to: QLYIPLEKASRKSMR*VGPRQCRSRQYTRC
Trigger: ACACCTTGTGTACTGGCGACTGCGGCACTGTCTGGGGCCCACCCACCGCATGGATTTCCTACTGGCCTTCTCCAGGGGTATGTACAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CAA 90 bp AGGTCTGGAGTCACAGTTTGGCATACGCGTCTCACAGTTTTGAGTCCTGATGAACGAGGGTCGGAGCCGTaGAGCACCAGCGCCACGGGC +
Preference number: 5 (lower is better)
Translates to: RSGVTVWHTRLTVLSPDERGSEP*STSATG
Trigger: GCCCGTGGCGCTGGTGCTCAACGGCTCCGACCCTCG...TTCATCAGGACTCAAAACTGTGAGACGCGTATGCCAAACTGTGACTCCAGACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CCA 90 bp AGGCTGCCATCAGTCAGCACCTCGATGTATGACAAGAAGGCTCGATaGCCTGGGGCACGCGTAGTCACTGCCACAAAGGATGTCCAGTCG +
Preference number: 5 (lower is better)
Translates to: RLPSVSTSMYDKKAR*PGARVVTATKDVQS
Trigger: CGACTGGACATCCTTTGTGGCAGTGACTACGCGTGCCCCAGGCCATCGAGCCTTCTTGTCATACATCGAGGTGCTGACTGATGGCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CAA 90 bp ATCACTGAAGGGTCACAAATAAGGGCTGGACTTGAAGATGTGATTGGTGGCATCGGGCTGTGGGTACGGTaGAGCTGGCTCCGGCAGGGA +
Preference number: 5 (lower is better)
Translates to: ITEGSQIRAGLEDVIGGIGLWVR*SWLRQG
Trigger: TCCCTGCCGGAGCCAGCTCAACCGTACCCACAGCCC...GATGCCACCAATCACATCTTCAAGTCCAGCCCTTATTTGTGACCCTTCAGTGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
CDS CCA 90 bp GTCCAGTTTCCCTGCCTTGAGCTGAGTGAGCGCCTCCTCCACTCTTaGCTGGTTGTATCGCACCATGTAGCTGTGCATATCAGGGTAGTT +
Preference number: 5 (lower is better)
Translates to: VQFPCLELSERLLHS*LVVSHHVAVHIRVV
Trigger: AACTACCCTGATATGCACAGCTACATGGTGCGATACAACCAGCCAAGAGTGGAGGAGGCGCTCACTCAGCTCAAGGCAGGGAAACTGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS TCA 90 bp CACCACTTCCCACGTCCTGTCTCTGGTGAGGGAGATGACTACCAGTaGCGGGTTTACCAGAAAGCCATCCTCATTGAAGGAGTAGTCTCG +
Preference number: 5 (lower is better)
Translates to: HHFPRPVSGEGDDYQ*RVYQKAILIEGVVS
Trigger: CGAGACTACTCCTTCAATGAGGATGGCTTTCTGGTAAACCCGTCACTGGTAGTCATCTCCCTCACCAGAGACAGGACGTGGGAAGTGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS-3UTR CAA 90 bp GGAGGCGTAAAAACATGGTTTTATTCCAAACACTGCAGTGTAGGAGCGGGAGAGTTCTCCGTGGACCCATaGGGCACCGTTCCAAACTTC +
Preference number: 5 (lower is better)
Translates to: GGVKTWFYSKHCSVGAGEFSVDP*GTVPNF
Trigger: GAAGTTTGGAACGGTGCCCAATGGGTCCACGGAGAA...CTCTCCCGCTCCTACACTGCAGTGTTTGGAATAAAACCATGTTTTTACGCCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002848.10
CDS CCA 72 bp GGCGGGATACGCCGGACTGGGCAGCGGCTGCGGCGGTaGCGGGGGTTTGGCCGGCGGCGGAGCAGCCTCAGC +
Preference number: 6 (lower is better)
Translates to: GGIRRTGQRLRR*RGFGRRRSSLS
Trigger: GCTGAGGCTGCTCCGCCGCCGGCCAAACCCCCGCCACCGCCGCAGCCGCTGCCCAGTCCGGCGTATCCCGCC
79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CCA 72 bp TGGCGTGGTGGCGGTAGCAGCTCCAGGCTGGCGCAGTaGCGGCAGTGCCATGCGGGGCCGCCGCGCGGGGGC +
Preference number: 6 (lower is better)
Translates to: WRGGGSSSRLAQ*RQCHAGPPRGG
Trigger: GCCCCCGCGCGGCGGCCCCGCATGGCACTGCCGCCACTGCGCCAGCCTGGAGCTGCTACCGCCACCACGCCA
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CCA 72 bp AGGTCCCAGCCACCCGCCGCGCGCCTGTGTCGGTGGTaGTGCGGTGCGGCGGCGGGCGCACGGTGCGAAGCC +
Preference number: 6 (lower is better)
Translates to: RSQPPAARLCRW*CGAAAGARCEA
Trigger: GGCTTCGCACCGTGCGCCCGCCGCCGCACCGCACCACCACCGACACAGGCGCGCGGCGGGTGGCTGGGACCT
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CCA 72 bp GGGAGGTCCCAGCCACCCGCCGCGCGCCTGTGTCGGTaGTGGTGCGGTGCGGCGGCGGGCGCACGGTGCGAA +
Preference number: 6 (lower is better)
Translates to: GRSQPPAARLCR*WCGAAAGARCE
Trigger: TTCGCACCGTGCGCCCGCCGCCGCACCGCACCACCACCGACACAGGCGCGCGGCGGGTGGCTGGGACCTCCC
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 72 bp GCGGGCGCGCGCGAGTCGTCCTCGAACACCACGCCGTaGACGCGCAGCCCCGACAGCAGGTCGCAGAGCTGC +
Preference number: 6 (lower is better)
Translates to: AGARESSSNTTP*TRSPDSRSQSC
Trigger: GCAGCTCTGCGACCTGCTGTCGGGGCTGCGCGTGCACGGCGTGGTGTTCGAGGACGACTCGCGCGCGCCCGC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CCA 72 bp CGCGCGCCTCGCCGAGGCCCAGCCCCTGCGGCTCGATaGGGCCGTAGTATCGGTGGAAGCCGTCGGCTAGCG +
Preference number: 6 (lower is better)
Translates to: RAPRRGPAPAAR*GRSIGGSRRLA
Trigger: CGCTAGCCGACGGCTTCCACCGATACTACGGCCCCATCGAGCCGCAGGGGCTGGGCCTCGGCGAGGCGCGCG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 72 bp GCGCCGCCGTGCACGGCCACGATGGGCAGCGAGGTCTaGGCCGACAGGAAGTCGAGAATGGGCGCGACGGCG +
Preference number: 6 (lower is better)
Translates to: APPCTATMGSEV*ADRKSRMGATA
Trigger: CGCCGTCGCGCCCATTCTCGACTTCCTGTCGGCGCAGACCTCGCTGCCCATCGTGGCCGTGCACGGCGGCGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CAA 90 bp AGCAGGTCGCAGAGCTGCAGCACAAGGCTGCGAGGGTCGGAGCCGTaGAGCACCAGCGCCACGGGCCGTACGTCCAGGCCCGGGCTGCGC +
Preference number: 6 (lower is better)
Translates to: SRSQSCSTRLRGSEP*STSATGRTSRPGLR
Trigger: GCGCAGCCCGGGCCTGGACGTACGGCCCGTGGCGCTGGTGCTCAACGGCTCCGACCCTCGCAGCCTTGTGCTGCAGCTCTGCGACCTGCT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 72 bp GGCGGAGGCGCCCACCAGCCACCGTCTAGGCCGTCGTaGGAGCAGCTGAGATGGCGTGGTGGCGGTAGCAGC +
Preference number: 6 (lower is better)
Translates to: GGGAHQPPSRPS*EQLRWRGGGSS
Trigger: GCTGCTACCGCCACCACGCCATCTCAGCTGCTCGCACGACGGCCTAGACGGTGGCTGGTGGGCGCCTCCGCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CCA 72 bp TGGGCAGCGAGGTCTGCGCCGACAGGAAGTCGAGAATaGGCGCGACGGCGGGCGCGCGCGAGTCGTCCTCGA +
Preference number: 6 (lower is better)
Translates to: WAARSAPTGSRE*ARRRARASRPR
Trigger: TCGAGGACGACTCGCGCGCGCCCGCCGTCGCGCCCATTCTCGACTTCCTGTCGGCGCAGACCTCGCTGCCCA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS TCA 72 bp AGAGCTGCAGCACAAGGCTGCGAGGGTCGGAGCCGTTaGGCACCAGCGCCACGGGCCGTACGTCCAGGCCCG +
Preference number: 6 (lower is better)
Translates to: RAAAQGCEGRSR*APAPRAVRPGP
Trigger: CGGGCCTGGACGTACGGCCCGTGGCGCTGGTGCTCAACGGCTCCGACCCTCGCAGCCTTGTGCTGCAGCTCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 72 bp CCGTGCACGCGCAGCCCCGACAGCAGGTCGCAGAGCTaGAGCACAAGGCTGCGAGGGTCGGAGCCGTTGAGC +
Preference number: 6 (lower is better)
Translates to: PCTRSPDSRSQS*STRLRGSEPLS
Trigger: GCTCAACGGCTCCGACCCTCGCAGCCTTGTGCTGCAGCTCTGCGACCTGCTGTCGGGGCTGCGCGTGCACGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 72 bp TTCTCCTTGGGTGTGAGTACGAGCGCGGCGCCGCCGTaGACGGCCACGATGGGCAGCGAGGTCTGCGCCGAC +
Preference number: 6 (lower is better)
Translates to: FSLGVSTSAAPP*TATMGSEVCAD
Trigger: GTCGGCGCAGACCTCGCTGCCCATCGTGGCCGTGCACGGCGGCGCCGCGCTCGTACTCACACCCAAGGAGAA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CAA 72 bp CAGAGCTGCAGCACAAGGCTGCGAGGGTCGGAGCCGTaGAGCACCAGCGCCACGGGCCGTACGTCCAGGCCC +
Preference number: 6 (lower is better)
Translates to: QSCSTRLRGSEP*STSATGRTSRP
Trigger: GGGCCTGGACGTACGGCCCGTGGCGCTGGTGCTCAACGGCTCCGACCCTCGCAGCCTTGTGCTGCAGCTCTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS TCA 72 bp CCTCGCGGGCGCAGAAGAGCAGGCGGATCTGCGCACTaGCACTACGGAGCTGTGCGCCCAGGACGGCCTCAC +
Preference number: 6 (lower is better)
Translates to: PRGRRRAGGSAH*HYGAVRPGRPH
Trigger: GTGAGGCCGTCCTGGGCGCACAGCTCCGTAGTGTCAGTGCGCAGATCCGCCTGCTCTTCTGCGCCCGCGAGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CAA 72 bp GGGCGGGGAGCGTCAGGCGGAGGGCTGTGGGTACGGTaGAGCTGGCTCCGGCAGGGAACCGAGTCTCTGATG +
Preference number: 6 (lower is better)
Translates to: GRGASGGGLWVR*SWLRQGTESLM
Trigger: CATCAGAGACTCGGTTCCCTGCCGGAGCCAGCTCAACCGTACCCACAGCCCTCCGCCTGACGCTCCCCGCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 72 bp TCTGCCTCCTCGCGGGCGCAGAAGAGCAGGCGGATCTaGGCACTGACACTACGGAGCTGTGCGCCCAGGACG +
Preference number: 6 (lower is better)
Translates to: SASSRAQKSRRI*ALTLRSCAPRT
Trigger: CGTCCTGGGCGCACAGCTCCGTAGTGTCAGTGCGCAGATCCGCCTGCTCTTCTGCGCCCGCGAGGAGGCAGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 72 bp TCTGGCCACCACCGCCACACCAGCAGCCACTCGACGTaGCAAGTCGTCACGCCAGCCAGCAGAGCGCACTGC +
Preference number: 6 (lower is better)
Translates to: SGHHRHTSSHST*QVVTPASRAHC
Trigger: GCAGTGCGCTCTGCTGGCTGGCGTGACGACTTGGCACGTCGAGTGGCTGCTGGTGTGGCGGTGGTGGCCAGA
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 72 bp GCGGGGGTTTGGCCGGCGGCGGAGCAGCCTCAGCGCTaGAGCAGCTGTACATACCCCTGGAGAAGGCCAGTA +
Preference number: 6 (lower is better)
Translates to: AGVWPAAEQPQR*SSCTYPWRRPV
Trigger: TACTGGCCTTCTCCAGGGGTATGTACAGCTGCTGCAGCGCTGAGGCTGCTCCGCCGCCGGCCAAACCCCCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CCA 72 bp GGAGCGTCAGGCGGAGGGCTGTGGGTACGGTTGAGCTaGCTCCGGCAGGGAACCGAGTCTCTGATGCAAGTG +
Preference number: 6 (lower is better)
Translates to: GASGGGLWVRLS*LRQGTESLMQV
Trigger: CACTTGCATCAGAGACTCGGTTCCCTGCCGGAGCCAGCTCAACCGTACCCACAGCCCTCCGCCTGACGCTCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CCA 72 bp GGCACCGTTCCAAACTTCAGGGGTGGGTATTGCTCCTaGGGCCGCTGGAACTTCCGGTCGCTGAGCCCAGAC +
Preference number: 6 (lower is better)
Translates to: GTVPNFRGGYCS*GRWNFRSLSPD
Trigger: GTCTGGGCTCAGCGACCGGAAGTTCCAGCGGCCCCAGGAGCAATACCCACCCCTGAAGTTTGGAACGGTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 72 bp AGTAGGAAATCCATGCGGTGGGTGGGCCCCAGACAGTaGCGCAGTCGCCAGTACACAAGGTGTTCCCAGGCG +
Preference number: 6 (lower is better)
Translates to: SRKSMRWVGPRQ*RSRQYTRCSQA
Trigger: CGCCTGGGAACACCTTGTGTACTGGCGACTGCGGCACTGTCTGGGGCCCACCCACCGCATGGATTTCCTACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 72 bp TGTACATACCCCTGGAGAAGGCCAGTAGGAAATCCATaGGGTGGGTGGGCCCCAGACAGTGCCGCAGTCGCC +
Preference number: 6 (lower is better)
Translates to: CTYPWRRPVGNP*GGWAPDSAAVA
Trigger: GGCGACTGCGGCACTGTCTGGGGCCCACCCACCGCATGGATTTCCTACTGGCCTTCTCCAGGGGTATGTACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CCA 72 bp CCCTGGAGAAGGCCAGTAGGAAATCCATGCGGTGGGTaGGCCCCAGACAGTGCCGCAGTCGCCAGTACACAA +
Preference number: 6 (lower is better)
Translates to: PWRRPVGNPCGG*APDSAAVASTQ
Trigger: TTGTGTACTGGCGACTGCGGCACTGTCTGGGGCCCACCCACCGCATGGATTTCCTACTGGCCTTCTCCAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS TCA 72 bp GCCCACCAGGCTGCCATCAGTCAGCACCTCGATGTATaGCAAGAAGGCTCGATGGCCTGGGGCACGCGTAGT +
Preference number: 6 (lower is better)
Translates to: AHQAAISQHLDV*QEGSMAWGTRS
Trigger: ACTACGCGTGCCCCAGGCCATCGAGCCTTCTTGTCATACATCGAGGTGCTGACTGATGGCAGCCTGGTGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 72 bp CAAGAAGGCTCGATGGCCTGGGGCACGCGTAGTCACTaGCACAAAGGATGTCCAGTCGTACTCCTCCAGCAC +
Preference number: 6 (lower is better)
Translates to: QEGSMAWGTRSH*HKGCPVVLLQH
Trigger: GTGCTGGAGGAGTACGACTGGACATCCTTTGTGGCAGTGACTACGCGTGCCCCAGGCCATCGAGCCTTCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CCA 72 bp ATGTTCATGAAATACCTGTGCAGACTCTCCCCGCGGTaGGTGCGATTCTGGGCGCGACAGTCATGGCCCAGC +
Preference number: 6 (lower is better)
Translates to: MFMKYLCRLSPR*VRFWARQSWPS
Trigger: GCTGGGCCATGACTGTCGCGCCCAGAATCGCACCCACCGCGGGGAGAGTCTGCACAGGTATTTCATGAACAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CCA 72 bp CCCTGCCTTGAGCTGAGTGAGCGCCTCCTCCACTCTTaGCTGGTTGTATCGCACCATGTAGCTGTGCATATC +
Preference number: 6 (lower is better)
Translates to: PCLELSERLLHS*LVVSHHVAVHI
Trigger: GATATGCACAGCTACATGGTGCGATACAACCAGCCAAGAGTGGAGGAGGCGCTCACTCAGCTCAAGGCAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS CCA 72 bp TCAGTCAGCACCTCGATGTATGACAAGAAGGCTCGATaGCCTGGGGCACGCGTAGTCACTGCCACAAAGGAT +
Preference number: 6 (lower is better)
Translates to: SVSTSMYDKKAR*PGARVVTATKD
Trigger: ATCCTTTGTGGCAGTGACTACGCGTGCCCCAGGCCATCGAGCCTTCTTGTCATACATCGAGGTGCTGACTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS TCA 72 bp AGGATGTCCAGTCGTACTCCTCCAGCACCTCAAAAATaGCCTGCAGCTGTTGCTCTGTGGAGGAGCCAAGCT +
Preference number: 6 (lower is better)
Translates to: RMSSRTPPAPQK*PAAVALWRSQA
Trigger: AGCTTGGCTCCTCCACAGAGCAACAGCTGCAGGTCATTTTTGAGGTGCTGGAGGAGTACGACTGGACATCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS TCA 72 bp CCACGTCCTGTCTCTGGTGAGGGAGATGACTACCAGTaGCGGGTTTACCAGAAAGCCATCCTCATTGAAGGA +
Preference number: 6 (lower is better)
Translates to: PRPVSGEGDDYQ*RVYQKAILIEG
Trigger: TCCTTCAATGAGGATGGCTTTCTGGTAAACCCGTCACTGGTAGTCATCTCCCTCACCAGAGACAGGACGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 72 bp CCATGTCCGCACGCTGATAGAACACCTCACCAATCATaGCATTCCAGACGCCATCGATCTTCTTGCCATGCT +
Preference number: 6 (lower is better)
Translates to: PCPHADRTPHQS*HSRRHRSSCHA
Trigger: AGCATGGCAAGAAGATCGATGGCGTCTGGAATGGCATGATTGGTGAGGTGTTCTATCAGCGTGCGGACATGG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2
CDS GCA 72 bp TGTATCGCACCATGTAGCTGTGCATATCAGGGTAGTTaGTTCGGATATTCTTCTCCGTGGACCCATTGGGCA +
Preference number: 6 (lower is better)
Translates to: CIAPCSCAYQGS*FGYSSPWTHWA
Trigger: TGCCCAATGGGTCCACGGAGAAGAATATCCGAAGCAACTACCCTGATATGCACAGCTACATGGTGCGATACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002848.10
ENSMUST00000211713.2