RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GRIN2C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020734

Ensembl transcript IDs: ENSMUST00000003351.13, ENSMUST00000106554.2

Found 287 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTaGAAGACTTCACGTGATGAGCAAGATCCCAGCCCACACCAAGAC +
Preference number: 1 (lower is better)
Translates to: KWLTPGQGHIFTPWD*KTSRDEQDPSPHQD
Trigger: GTCTTGGTGTGGGCTGGGATCTTGCTCATCACGTGAAGTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
3UTR CCA 90 bp CAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTaGCCAAGACCAGCCACAGAATCCAGTCCAGCAGGAACCAGAGCT +
Preference number: 1 (lower is better)
Translates to: QRRRQRSQSLSVPQT*PRPATESSPAGTRA
Trigger: AGCTCTGGTTCCTGCTGGACTGGATTCTGTGGCTGGTCTTGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
3UTR CCA 90 bp ACTAGGAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTaGGACTGCAAGACTTCACGTGATGAGCAAGATCCCAGCCCACAC +
Preference number: 1 (lower is better)
Translates to: TRKWLTPGQGHIFTP*DCKTSRDEQDPSPH
Trigger: GTGTGGGCTGGGATCTTGCTCATCACGTGAAGTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTCCTAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
3UTR CCA 90 bp GGTCATAAGCTGGCCATGGAAGATATCCTTTTCACTGGGGTCTCATaGCCAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCT +
Preference number: 1 (lower is better)
Translates to: GHKLAMEDILFTGVS*PEFQRRRQRSQSLS
Trigger: AGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCCAGCTTATGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
3UTR-3UTR CCA 90 bp GAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACTCTGTCCCCCAAACTTaGCCAAGACCAGCCACAGAA +
Preference number: 2 (lower is better)
Translates to: EMADARTGTHFYSLGLQDSVPQT*PRPATE
Trigger: TTCTGTGGCTGGTCTTGGCCAAGTTTGGGGGACAGA...GTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
3UTR-3UTR CCA 90 bp ACTCAACCTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACATCTGTCCCCCAAACTTaGCCAAGACCAGCCACAGAA +
Preference number: 2 (lower is better)
Translates to: TQPPFPILCPQPKATATTSVPQT*PRPATE
Trigger: TTCTGTGGCTGGTCTTGGCCAAGTTTGGGGGACAGA...TGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAGGTTGAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
3UTR-3UTR CCA 90 bp TGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACTTCAAGATATCCTTTTCACTaGGGTCTCATGGCCAGAATT +
Preference number: 2 (lower is better)
Translates to: WLTPGQGHIFTPWDCKTSRYPFH*GLMARI
Trigger: AATTCTGGCCATGAGACCCCAGTGAAAAGGATATCT...TGAAGTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
3UTR-3UTR CCA 90 bp AATGTTCCTATGAAAAGAAATTCCAACCAATTGGAGCAAAAGGTGAGTTGGCCCGCTAAGGTCATAAGCTaGCCATGGAAGATATCCTTT +
Preference number: 2 (lower is better)
Translates to: NVPMKRNSNQLEQKVSWPAKVIS*PWKISF
Trigger: AAAGGATATCTTCCATGGCCAGCTTATGACCTTAGC...GGGCCAACTCACCTTTTGCTCCAATTGGTTGGAATTTCTTTTCATAGGAACATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
3UTR CCA 72 bp AGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTaGCCAAGACCAGCCACAGAATCCAGTCCAGCAGGA +
Preference number: 3 (lower is better)
Translates to: RQRSQSLSVPQT*PRPATESSPAG
Trigger: TCCTGCTGGACTGGATTCTGTGGCTGGTCTTGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
3UTR TCA 72 bp AACCCAAGGCCACAGCAACCACAACTAGGAAATGGCTaGCGCCAGGACAGGGACACATTTTTACTCCCTGGG +
Preference number: 3 (lower is better)
Translates to: NPRPQQPQLGNG*RQDRDTFLLPG
Trigger: CCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
3UTR GCA 72 bp ACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTaGAAGACTTCACGTGATGAGCAAGATCCCAGCCCA +
Preference number: 3 (lower is better)
Translates to: TPGQGHIFTPWD*KTSRDEQDPSP
Trigger: TGGGCTGGGATCTTGCTCATCACGTGAAGTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
3UTR CCA 72 bp TGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTaGGACTGCAAGACTTCACGTGATGAGCAAGATCCC +
Preference number: 3 (lower is better)
Translates to: WLTPGQGHIFTP*DCKTSRDEQDP
Trigger: GGGATCTTGCTCATCACGTGAAGTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
3UTR-3UTR CAA 90 bp TGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACTTCACAGAGGAGTCAAAGCTaGTCTGTCCCCCAAACTTGG +
Preference number: 3 (lower is better)
Translates to: WLTPGQGHIFTPWDCKTSQRSQS*SVPQTW
Trigger: CCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTG...TGAAGTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
3UTR-3UTR CAA 90 bp GAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACCAGAGGAGTCAAAGCTaGTCTGTCCCCCAAACTTGG +
Preference number: 3 (lower is better)
Translates to: EMADARTGTHFYSLGLQDQRSQS*SVPQTW
Trigger: CCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTG...GTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp GCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCAAGACCAGCCACAGAAGGACCCGGGGTGCATaGCCGCGGGCCGGAGGTGGT +
Preference number: 4 (lower is better)
Translates to: AEESKLVCPPNLAKTSHRRTRGA*PRAGGG
Trigger: ACCACCTCCGGCCCGCGGTCATGCACCCCGGGTCCT...TCTGTGGCTGGTCTTGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp AAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCAAGACCGGCCCAGCTCCAGCGTaGGCACGTCCAGCAGCCGCC +
Preference number: 4 (lower is better)
Translates to: KKKAEESKLVCPPNLAKTGPAPA*ARPAAA
Trigger: GGCGGCTGCTGGACGTGCTCACGCTGGAGCTGGGCC...GGTCTTGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp ACTCAACCTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAAGGACCCGGGGTGCATaGCCGCGGGCCGGAGGTGGT +
Preference number: 4 (lower is better)
Translates to: TQPPFPILCPQPKATATTRTRGA*PRAGGG
Trigger: ACCACCTCCGGCCCGCGGTCATGCACCCCGGGTCCT...TGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAGGTTGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp GAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACGCCCACTGGGAAGGCTaGAGGGGGAGCGTCGGTGCT +
Preference number: 4 (lower is better)
Translates to: EMADARTGTHFYSLGLQDAHWEG*RGSVGA
Trigger: AGCACCGACGCTCCCCCTGCAGCCTTCCCAGTGGGC...GTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp TTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGCTGACGCCAGTGGCCACTGTCAGGTaGCGGCTGTCCACCACAGGC +
Preference number: 4 (lower is better)
Translates to: LCPQPKATATTTRKWLTPVATVR*RLSTTG
Trigger: GCCTGTGGTGGACAGCCGGCACCTGACAGTGGCCAC...TGGCGTCAGCCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp TTGGCCAAGACCAGCCACAGAATCCAGTCCAGCAGGAACCAGAGCTGCCGGTACCGAACCCTCTTGCCGTaGTTGCCGTTGGTCACCAGG +
Preference number: 4 (lower is better)
Translates to: LAKTSHRIQSSRNQSCRYRTLLP*LPLVTR
Trigger: CCTGGTGACCAACGGCAAGCACGGCAAGAGGGTTCG...GTACCGGCAGCTCTGGTTCCTGCTGGACTGGATTCTGTGGCTGGTCTTGGCCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp TTGGCCAAGACCAGCCACAGAATCCAGTCCAGCAGGAACCAGAGCTGCCGGTACTCGAGTGAAGGCTTCTaGCACGGAGCTGGGCAGGGA +
Preference number: 4 (lower is better)
Translates to: LAKTSHRIQSSRNQSCRYSSEGF*HGAGQG
Trigger: TCCCTGCCCAGCTCCGTGGCAGAAGCCTTCACTCGA...GTACCGGCAGCTCTGGTTCCTGCTGGACTGGATTCTGTGGCTGGTCTTGGCCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp GAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACAGACGAGTCCGGGCCTaGGCCTGCAGTGGCCCAGAG +
Preference number: 4 (lower is better)
Translates to: EMADARTGTHFYSLGLQDRRVRA*ACSGPE
Trigger: CTCTGGGCCACTGCAGGCCCAGGCCCGGACTCGTCT...GTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp ACTCAACCTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAGCCAGCTCAGGTAGCTaGCGTCGGCGACGGCGCGCA +
Preference number: 4 (lower is better)
Translates to: TQPPFPILCPQPKATATTASSGS*RRRRRA
Trigger: TGCGCGCCGTCGCCGACGCCAGCTACCTGAGCTGGC...TGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAGGTTGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp TTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGCTGACGCCACTGACGGGTCCTGGGTaGCTTCGGCAGTCTCCAGCC +
Preference number: 4 (lower is better)
Translates to: LCPQPKATATTTRKWLTPLTGPG*LRQSPA
Trigger: GGCTGGAGACTGCCGAAGCCACCCAGGACCCGTCAG...TGGCGTCAGCCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp TTGGCCAAGACCAGCCACAGAATCCAGTCCAGCAGGAACCAGAGCTGCCGGTACCTCGGCCTTCCCAGGTaGCATTCAGCAGATGCCTGT +
Preference number: 4 (lower is better)
Translates to: LAKTSHRIQSSRNQSCRYLGLPR*HSADAC
Trigger: ACAGGCATCTGCTGAATGTCACCTGGGAAGGCCGAG...GTACCGGCAGCTCTGGTTCCTGCTGGACTGGATTCTGTGGCTGGTCTTGGCCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp TGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACTTCAGCAGTGGCCCAGAGCTaGCAAACACCACCGCCACGG +
Preference number: 4 (lower is better)
Translates to: WLTPGQGHIFTPWDCKTSAVAQS*QTPPPR
Trigger: CCGTGGCGGTGGTGTTTGGCAGCTCTGGGCCACTGC...TGAAGTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp ACTCAACCTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAAGCGCGTGGCCCGGGTaGAGGCTGGTGATGACAGCG +
Preference number: 4 (lower is better)
Translates to: TQPPFPILCPQPKATATTSAWPG*RLVMTA
Trigger: CGCTGTCATCACCAGCCTGCACCCGGGCCACGCGCT...TGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAGGTTGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp TGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACTTCAGTGGCCACTGTCAGGTaGCGGCTGTCCACCACAGGC +
Preference number: 4 (lower is better)
Translates to: WLTPGQGHIFTPWDCKTSVATVR*RLSTTG
Trigger: GCCTGTGGTGGACAGCCGGCACCTGACAGTGGCCAC...TGAAGTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp TGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACTTCAACATGCTGTCTGGGCTaGCAGGTGGCGGCCACCCCT +
Preference number: 4 (lower is better)
Translates to: WLTPGQGHIFTPWDCKTSTCCLG*QVAATP
Trigger: AGGGGTGGCCGCCACCTGGCAGCCCAGACAGCATGT...TGAAGTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp TTTACTCCCTGGGACTGCAAGACTTCACGTGATGAGCAAGATCCCAGCCCACACACATGCTGTCTGGGCTaGCAGGTGGCGGCCACCCCT +
Preference number: 4 (lower is better)
Translates to: FTPWDCKTSRDEQDPSPHTCCLG*QVAATP
Trigger: AGGGGTGGCCGCCACCTGGCAGCCCAGACAGCATGT...GTGTGGGCTGGGATCTTGCTCATCACGTGAAGTCTTGCAGTCCCAGGGAGTAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp TTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGCTGACGCCAACTGATGAGGCCCACTaGGAAGGCTGCAGGGGGAGC +
Preference number: 4 (lower is better)
Translates to: LCPQPKATATTTRKWLTPTDEAH*EGCRGS
Trigger: GCTCCCCCTGCAGCCTTCCCAGTGGGCCTCATCAGT...TGGCGTCAGCCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp AGGAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGCTGACGGGTCCTGGGTaGCTTCGGCAGTCTCCAGCC +
Preference number: 4 (lower is better)
Translates to: RKWLTPGQGHIFTPWDCKLTGPG*LRQSPA
Trigger: GGCTGGAGACTGCCGAAGCCACCCAGGACCCGTCAG...CTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp GAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACCTTCTGCCACGGAGCTaGGCAGGGAAGCGTGCCGAG +
Preference number: 4 (lower is better)
Translates to: EMADARTGTHFYSLGLQDLLPRS*AGKRAE
Trigger: CTCGGCACGCTTCCCTGCCCAGCTCCGTGGCAGAAG...GTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp TTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGCTGACGCCAGCCCACAGATTTGGGTaGGGATGCTGCTGGGGTTGG +
Preference number: 4 (lower is better)
Translates to: LCPQPKATATTTRKWLTPAHRFG*GCCWGW
Trigger: CCAACCCCAGCAGCATCCTCACCCAAATCTGTGGGC...TGGCGTCAGCCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp GAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACCTGGCTCCTTGGGGGTaGGGACCACAGCAGAACCTC +
Preference number: 4 (lower is better)
Translates to: EMADARTGTHFYSLGLQDLAPWG*GPQQNL
Trigger: GAGGTTCTGCTGTGGTCCTCACCCCCAAGGAGCCAG...GTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp TTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGCTGACGCCAGAGAAATGGGCGCCCTaGCCTCTCTGCTCGAGGGAA +
Preference number: 4 (lower is better)
Translates to: LCPQPKATATTTRKWLTPEKWAP*PLCSRE
Trigger: TTCCCTCGAGCAGAGAGGTCAGGGCGCCCATTTCTC...TGGCGTCAGCCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp AAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCAAGACCGAACAGGGTGGAGGGTaGCGGCAGACAGTCCCCCAG +
Preference number: 4 (lower is better)
Translates to: KKKAEESKLVCPPNLAKTEQGGG*RQTVPQ
Trigger: CTGGGGGACTGTCTGCCGTCACCCTCCACCCTGTTC...GGTCTTGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp ACTCAACCTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAGCAGTGGCCCAGAGCTaGCAAACACCACCGCCACGG +
Preference number: 4 (lower is better)
Translates to: TQPPFPILCPQPKATATTAVAQS*QTPPPR
Trigger: CCGTGGCGGTGGTGTTTGGCAGCTCTGGGCCACTGC...TGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAGGTTGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp ACTCAACCTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACACCGAGGGGGAGACGGTaGCGTTGCTCCTTGCCACCA +
Preference number: 4 (lower is better)
Translates to: TQPPFPILCPQPKATATTPRGRR*RCSLPP
Trigger: TGGTGGCAAGGAGCAACGGCACCGTCTCCCCCTCGG...TGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAGGTTGAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp CTCAACCTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAAGGCCTGGGCCTGCAGTaGCCCAGAGCTGCCAAACAC +
Preference number: 4 (lower is better)
Translates to: LNLRFQFCVPNPRPQQPQGLGLQ*PRAAKH
Trigger: GTGTTTGGCAGCTCTGGGCCACTGCAGGCCCAGGCC...TTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAGGTTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp ATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCGCCAGCTCAGGTAGCTaGCGTCGGCGACGGCGCGCA +
Preference number: 4 (lower is better)
Translates to: ISKKKAEESKLVCPPNLAASSGS*RRRRRA
Trigger: TGCGCGCCGTCGCCGACGCCAGCTACCTGAGCTGGC...GGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp TTGGCCAAGACCAGCCACAGAATCCAGTCCAGCAGGAACCAGAGCTGCCGGTACCGATCACAACCATTGTaGGCTGGACCAGGTACCCAC +
Preference number: 4 (lower is better)
Translates to: LAKTSHRIQSSRNQSCRYRSQPL*AGPGTH
Trigger: GTGGGTACCTGGTCCAGCCCACAATGGTTGTGATCG...GTACCGGCAGCTCTGGTTCCTGCTGGACTGGATTCTGTGGCTGGTCTTGGCCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp GCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCAAGACCAGCCACAGAGCCTTTCTTCCAGTGTaGCCACTGTCAGGTGCCGGC +
Preference number: 4 (lower is better)
Translates to: AEESKLVCPPNLAKTSHRAFLPV*PLSGAG
Trigger: GCCGGCACCTGACAGTGGCCACACTGGAAGAAAGGC...TCTGTGGCTGGTCTTGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp AGGAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGGGAGCGCCAGGTCTATaGCCCGCTTCCAGTGGGAGT +
Preference number: 4 (lower is better)
Translates to: RKWLTPGQGHIFTPWDCKGAPGL*PASSGS
Trigger: ACTCCCACTGGAAGCGGGCCATAGACCTGGCGCTCC...CTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp GCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCAAGACCAGCCACAGAGTGGCTGGAACAGGGTaGAGGGTGACGGCAGACAGT +
Preference number: 4 (lower is better)
Translates to: AEESKLVCPPNLAKTSHRVAGTG*RVTADS
Trigger: ACTGTCTGCCGTCACCCTCCACCCTGTTCCAGCCAC...TCTGTGGCTGGTCTTGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp ACTCAACCTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACACACCAAGGAGTGAAGTaGGAAGCAGGGCGGGCCCCA +
Preference number: 4 (lower is better)
Translates to: TQPPFPILCPQPKATATTHQGVK*EAGRAP
Trigger: TGGGGCCCGCCCTGCTTCTCACTTCACTCCTTGGTG...TGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAGGTTGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp AGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGGCCCAGCTCCAGCGTaGGCACGTCCAGCAGCCGCC +
Preference number: 4 (lower is better)
Translates to: RISKKKAEESKLVCPPNLGPAPA*ARPAAA
Trigger: GGCGGCTGCTGGACGTGCTCACGCTGGAGCTGGGCC...CAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp TGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACTTCAGGTACTAACCACACGTaGCCGGGTCCCACCAAGCCA +
Preference number: 4 (lower is better)
Translates to: WLTPGQGHIFTPWDCKTSGTNHT*PGPTKP
Trigger: TGGCTTGGTGGGACCCGGTCACGTGTGGTTAGTACC...TGAAGTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp GCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCAAGACCAGCCACAGATGCCAGACCCAATGGTaGCCAGCTTGCAGCCTTCGT +
Preference number: 4 (lower is better)
Translates to: AEESKLVCPPNLAKTSHRCQTQW*PACSLR
Trigger: ACGAAGGCTGCAAGCTGGTCACCATTGGGTCTGGCA...TCTGTGGCTGGTCTTGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp ACCACAACTAGGAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGCACATTGGCCTGGGCTaGGCCTGCTGTAAGGTCCGG +
Preference number: 4 (lower is better)
Translates to: TTTRKWLTPGQGHIFTPWHIGLG*ACCKVR
Trigger: CCGGACCTTACAGCAGGCTCAGCCCAGGCCAATGTG...CCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTCCTAGTTGTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp TTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGCGAACAGGGTGGAGGGTaGCGGCAGACAGTCCCCCAG +
Preference number: 4 (lower is better)
Translates to: FQFCVPNPRPQQPQLGNGEQGGG*RQTVPQ
Trigger: CTGGGGGACTGTCTGCCGTCACCCTCCACCCTGTTC...GCCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp TGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACTTCAGCTCCCAAGTTCCAATaGGCCAGGGACTGTGGCTGG +
Preference number: 4 (lower is better)
Translates to: WLTPGQGHIFTPWDCKTSAPKFQ*ARDCGW
Trigger: CCAGCCACAGTCCCTGGCTCATTGGAACTTGGGAGC...TGAAGTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp GCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCAAGACCAGCCACAGAAAGTCCAGGAAGTTCTaGGGGGTGAGACGAGTCCGG +
Preference number: 4 (lower is better)
Translates to: AEESKLVCPPNLAKTSHRKSRKF*GVRRVR
Trigger: CCGGACTCGTCTCACCCCGCAGAACTTCCTGGACTT...TCTGTGGCTGGTCTTGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp TTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCAAGCGCGTGGCCCGGGTaGAGGCTGGTGATGACAGCG +
Preference number: 4 (lower is better)
Translates to: FQRRRQRSQSLSVPQTWPSAWPG*RLVMTA
Trigger: CGCTGTCATCACCAGCCTGCACCCGGGCCACGCGCT...TGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp TTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGCTGACGCCACCCTCTTGCCGTGCTTaGCGTTGGTCACCAGGTACA +
Preference number: 4 (lower is better)
Translates to: LCPQPKATATTTRKWLTPPSCRA*RWSPGT
Trigger: TGTACCTGGTGACCAACGGCAAGCACGGCAAGAGGG...TGGCGTCAGCCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp TTGGCCAAGACCAGCCACAGAATCCAGTCCAGCAGGAACCAGAGCTGCCGGTACGTTGTTGAAGACCAGTaGCCACAGCAACCACACGGA +
Preference number: 4 (lower is better)
Translates to: LAKTSHRIQSSRNQSCRYVVEDQ*PQQPHG
Trigger: TCCGTGTGGTTGCTGTGGGCACTGGTCTTCAACAAC...GTACCGGCAGCTCTGGTTCCTGCTGGACTGGATTCTGTGGCTGGTCTTGGCCAA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp AGGAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGCTAGCCCCAGGGTCCTaGCTCTGTGTGATGGAGGCT +
Preference number: 4 (lower is better)
Translates to: RKWLTPGQGHIFTPWDCKLAPGS*LCVMEA
Trigger: AGCCTCCATCACACAGAGGCAGGACCCTGGGGCTAG...CTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp TGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACTTCAGCCTTTCTTCCAGTGTaGCCACTGTCAGGTGCCGGC +
Preference number: 4 (lower is better)
Translates to: WLTPGQGHIFTPWDCKTSAFLPV*PLSGAG
Trigger: GCCGGCACCTGACAGTGGCCACACTGGAAGAAAGGC...TGAAGTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp TGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACTTCACGTGACCGGTACACCTaGCAGGCAGAGGGTTGGATC +
Preference number: 4 (lower is better)
Translates to: WLTPGQGHIFTPWDCKTSRDRYT*QAEGWI
Trigger: GATCCAACCCTCTGCCTGCCAGGTGTACCGGTCACG...TGAAGTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp ACCACAACTAGGAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGCCAGGGACTGTGGCTaGAACAGGGTGGAGGGTGAC +
Preference number: 4 (lower is better)
Translates to: TTTRKWLTPGQGHIFTPWARDCG*NRVEGD
Trigger: GTCACCCTCCACCCTGTTCCAGCCACAGTCCCTGGC...CCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTCCTAGTTGTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp GCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCAAGACCAGCCACAGACTTCTGATTCCAGGCTaGAGATCCGCCTCCAGGTGC +
Preference number: 4 (lower is better)
Translates to: AEESKLVCPPNLAKTSHRLLIPG*RSASRC
Trigger: GCACCTGGAGGCGGATCTCCAGCCTGGAATCAGAAG...TCTGTGGCTGGTCTTGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp TTGGCCAAGACCAGCCACAGAATCCAGTCCAGCAGGAACCAGAGCTGCCGGTACCAGGGCTCTCCACAATaGCAAAAGGCCTTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: LAKTSHRIQSSRNQSCRYQGSPQ*QKAFLP
Trigger: TGGAAGAAAGGCCTTTTGTCATTGTGGAGAGCCCTG...GTACCGGCAGCTCTGGTTCCTGCTGGACTGGATTCTGTGGCTGGTCTTGGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp TGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACTTCACCATCTTCAGGCTTGTaGGAGCATCCTCCACCGAGC +
Preference number: 4 (lower is better)
Translates to: WLTPGQGHIFTPWDCKTSPSSGL*EHPPPS
Trigger: GCTCGGTGGAGGATGCTCTCACAAGCCTGAAGATGG...TGAAGTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp CTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAGGTCCTGCCTCTGTGTaGTGGAGGCTCCCAAGTTCC +
Preference number: 4 (lower is better)
Translates to: LRFQFCVPNPRPQQPQLGGPASV*WRLPSS
Trigger: GGAACTTGGGAGCCTCCATCACACAGAGGCAGGACC...TCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp ACCACAACTAGGAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGTGTCCTCAAAGACGATaGCGTGGACTCGGGCGGCAC +
Preference number: 4 (lower is better)
Translates to: TTTRKWLTPGQGHIFTPWCPQRR*RGLGRH
Trigger: GTGCCGCCCGAGTCCACGGCATCGTCTTTGAGGACA...CCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTCCTAGTTGTGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp ATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCAGCACCTGCAGCTGCTaGTCCAGGGACACGCCCAGC +
Preference number: 4 (lower is better)
Translates to: ISKKKAEESKLVCPPNLASTCSC*SRDTPS
Trigger: GCTGGGCGTGTCCCTGGAGCAGCAGCTGCAGGTGCT...GGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp ATGGCCAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAGCACCTGCAGCTGCTaGTCCAGGGACACGCCCAGC +
Preference number: 4 (lower is better)
Translates to: MARISKKKAEESKLVCPPSTCSC*SRDTPS
Trigger: GCTGGGCGTGTCCCTGGAGCAGCAGCTGCAGGTGCT...TGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTGGCCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp GCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCAAGACCAGCCACAGAATCTCCCAGAGGCGATaGCGGTTGAGAGCGATCACA +
Preference number: 4 (lower is better)
Translates to: AEESKLVCPPNLAKTSHRISQRR*RLRAIT
Trigger: TGTGATCGCTCTCAACCGGCATCGCCTCTGGGAGAT...TCTGTGGCTGGTCTTGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp GAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACCCCTCTTGCCGTGCTTaGCGTTGGTCACCAGGTACA +
Preference number: 4 (lower is better)
Translates to: EMADARTGTHFYSLGLQDPSCRA*RWSPGT
Trigger: TGTACCTGGTGACCAACGGCAAGCACGGCAAGAGGG...GTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp CTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGATCGAGTGAAGGCTTCTaGCACGGAGCTGGGCAGGGA +
Preference number: 4 (lower is better)
Translates to: LRFQFCVPNPRPQQPQLGSSEGF*HGAGQG
Trigger: TCCCTGCCCAGCTCCGTGGCAGAAGCCTTCACTCGA...TCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp CCAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTAGACGAGTCCGGGCCTaGGCCTGCAGTGGCCCAGAG +
Preference number: 4 (lower is better)
Translates to: PEFQRRRQRSQSLSVPQTRRVRA*ACSGPE
Trigger: CTCTGGGCCACTGCAGGCCCAGGCCCGGACTCGTCT...AGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp CCAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTCGAGGAAGAGCGCGTaGCCCGGGTGCAGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: PEFQRRRQRSQSLSVPQTSRKSA*PGCRLV
Trigger: CACCAGCCTGCACCCGGGCCACGCGCTCTTCCTCGA...AGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp GGTCATAAGCTGGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAAACTGATGAGGCCCACTaGGAAGGCTGCAGGGGGAGC +
Preference number: 4 (lower is better)
Translates to: GHKLAMEDILFTGVSWPETDEAH*EGCRGS
Trigger: GCTCCCCCTGCAGCCTTCCCAGTGGGCCTCATCAGT...TTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCCAGCTTATGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp AAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCAAGACCCACCGAGGGCCAGAATaGCTACACCGTCGCGGACTT +
Preference number: 4 (lower is better)
Translates to: KKKAEESKLVCPPNLAKTHRGPE*LHRRGL
Trigger: AAGTCCGCGACGGTGTAGCCATTCTGGCCCTCGGTG...GGTCTTGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp TGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACTTCAACAACCATTGTGGGCTaGACCAGGTACCCACCAGGG +
Preference number: 4 (lower is better)
Translates to: WLTPGQGHIFTPWDCKTSTTIVG*TRYPPG
Trigger: CCCTGGTGGGTACCTGGTCCAGCCCACAATGGTTGT...TGAAGTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp GGTCATAAGCTGGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAAGGAGCGCCAGGTCTATaGCCCGCTTCCAGTGGGAGT +
Preference number: 4 (lower is better)
Translates to: GHKLAMEDILFTGVSWPEGAPGL*PASSGS
Trigger: ACTCCCACTGGAAGCGGGCCATAGACCTGGCGCTCC...TTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCCAGCTTATGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp TGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACTTCAGCATCTTCAGCACATTaGCCTGGGCTGAGCCTGCTG +
Preference number: 4 (lower is better)
Translates to: WLTPGQGHIFTPWDCKTSASSAH*PGLSLL
Trigger: CAGCAGGCTCAGCCCAGGCCAATGTGCTGAAGATGC...TGAAGTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp ACTCAACCTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACACGTGACCGGTACACCTaGCAGGCAGAGGGTTGGATC +
Preference number: 4 (lower is better)
Translates to: TQPPFPILCPQPKATATTRDRYT*QAEGWI
Trigger: GATCCAACCCTCTGCCTGCCAGGTGTACCGGTCACG...TGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAGGTTGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp CTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAGTGGCTGGAACAGGGTaGAGGGTGACGGCAGACAGT +
Preference number: 4 (lower is better)
Translates to: LRFQFCVPNPRPQQPQLGVAGTG*RVTADS
Trigger: ACTGTCTGCCGTCACCCTCCACCCTGTTCCAGCCAC...TCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp TTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGCTGACGCCATTATATCCCCGCTGCTaGAGGTGTGGTTGCTCTGTC +
Preference number: 4 (lower is better)
Translates to: LCPQPKATATTTRKWLTPLYPRC*RCGCSV
Trigger: GACAGAGCAACCACACCTTCAGCAGCGGGGATATAA...TGGCGTCAGCCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp TTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGCTGACGCCAAGTCGTAGGAGAACTTaGCCACCTTGGCCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: LCPQPKATATTTRKWLTPSRRRT*PPWPAS
Trigger: AGAAGCTGGCCAAGGTGGTCAAGTTCTCCTACGACT...TGGCGTCAGCCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp ACCACAACTAGGAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGTGCCCGCCATGTAGTTaGGGACGGCGGCATCATAGA +
Preference number: 4 (lower is better)
Translates to: TTTRKWLTPGQGHIFTPWCPPCS*GRRHHR
Trigger: TCTATGATGCCGCCGTCCTCAACTACATGGCGGGCA...CCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTCCTAGTTGTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp TGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACTTCATGTAGATGCCCCTGCTaGAAGCCAGCAGGAAGTCCA +
Preference number: 4 (lower is better)
Translates to: WLTPGQGHIFTPWDCKTSCRCPC*KPAGSP
Trigger: TGGACTTCCTGCTGGCTTTCAGCAGGGGCATCTACA...TGAAGTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp ATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCCACATTGGCCTGGGCTaGGCCTGCTGTAAGGTCCGG +
Preference number: 4 (lower is better)
Translates to: ISKKKAEESKLVCPPNLAHIGLG*ACCKVR
Trigger: CCGGACCTTACAGCAGGCTCAGCCCAGGCCAATGTG...GGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp TTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGCGCTCCCAAGTTCCAATaGGCCAGGGACTGTGGCTGG +
Preference number: 4 (lower is better)
Translates to: FQFCVPNPRPQQPQLGNGAPKFQ*ARDCGW
Trigger: CCAGCCACAGTCCCTGGCTCATTGGAACTTGGGAGC...GCCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp CTCAACCTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAAACCTTGAACAGCACCTaGAGCTGCTGCTCCAGGGAC +
Preference number: 4 (lower is better)
Translates to: LNLRFQFCVPNPRPQQPQTLNST*SCCSRD
Trigger: GTCCCTGGAGCAGCAGCTGCAGGTGCTGTTCAAGGT...TTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAGGTTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp AGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCCACTGGGAAGGCTaGAGGGGGAGCGTCGGTGCT +
Preference number: 4 (lower is better)
Translates to: RISKKKAEESKLVCPPNLAHWEG*RGSVGA
Trigger: AGCACCGACGCTCCCCCTGCAGCCTTCCCAGTGGGC...CAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp TTTACTCCCTGGGACTGCAAGACTTCACGTGATGAGCAAGATCCCAGCCCACACCAGGCTGCAGAGAAGTaGTGTAGCGAGGCCATACTG +
Preference number: 4 (lower is better)
Translates to: FTPWDCKTSRDEQDPSPHQAAEK*CSEAIL
Trigger: CAGTATGGCCTCGCTACAGCACTTCTCTGCAGCCTG...GTGTGGGCTGGGATCTTGCTCATCACGTGAAGTCTTGCAGTCCCAGGGAGTAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp ACTCAACCTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACACACCACGAACCCTCTTaGCGTGCTTGCCGTTGGTCA +
Preference number: 4 (lower is better)
Translates to: TQPPFPILCPQPKATATTHHEPS*RACRWS
Trigger: TGACCAACGGCAAGCACGGCAAGAGGGTTCGTGGTG...TGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAGGTTGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp AAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCAAGACCGGTGCCGTTGCTCCTTaGCACCATCACACTGATGCC +
Preference number: 4 (lower is better)
Translates to: KKKAEESKLVCPPNLAKTGAVAP*HHHTDA
Trigger: GGCATCAGTGTGATGGTGGCAAGGAGCAACGGCACC...GGTCTTGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp CCAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTCCGAGGGGGAGACGGTaGCGTTGCTCCTTGCCACCA +
Preference number: 4 (lower is better)
Translates to: PEFQRRRQRSQSLSVPQTPRGRR*RCSLPP
Trigger: TGGTGGCAAGGAGCAACGGCACCGTCTCCCCCTCGG...AGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp TTGGCCAAGACCAGCCACAGAATCCAGTCCAGCAGGAACCAGAGCTGCCGGTACGTAGCGAGGCCATACTaGATACTTCATGTACAGGAC +
Preference number: 4 (lower is better)
Translates to: LAKTSHRIQSSRNQSCRYVARPY*ILHVQD
Trigger: GTCCTGTACATGAAGTATCCAGTATGGCCTCGCTAC...GTACCGGCAGCTCTGGTTCCTGCTGGACTGGATTCTGTGGCTGGTCTTGGCCAA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp CATAAGCTGGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAATTTCTTCTGCCACGGAGCTaGGCAGGGAAGCGTGCCGAG +
Preference number: 4 (lower is better)
Translates to: HKLAMEDILFTGVSWPEFLLPRS*AGKRAE
Trigger: CTCGGCACGCTTCCCTGCCCAGCTCCGTGGCAGAAG...AAATTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCCAGCTTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp TTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGCCAGCAGAACGGCAGGTaGGTATGGGTGTGCAGGCAG +
Preference number: 4 (lower is better)
Translates to: FQFCVPNPRPQQPQLGNGQQNGR*VWVCRQ
Trigger: CTGCCTGCACACCCATACCCACCTGCCGTTCTGCTG...GCCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp ACCACAACTAGGAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGCTTCTGATTCCAGGCTaGAGATCCGCCTCCAGGTGC +
Preference number: 4 (lower is better)
Translates to: TTTRKWLTPGQGHIFTPWLLIPG*RSASRC
Trigger: GCACCTGGAGGCGGATCTCCAGCCTGGAATCAGAAG...CCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTCCTAGTTGTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp CATAAGCTGGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAATTTCACCAAGGAGTGAAGTaGGAAGCAGGGCGGGCCCCA +
Preference number: 4 (lower is better)
Translates to: HKLAMEDILFTGVSWPEFHQGVK*EAGRAP
Trigger: TGGGGCCCGCCCTGCTTCTCACTTCACTCCTTGGTG...AAATTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCCAGCTTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp GGTCATAAGCTGGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAACCATCTTCAGGCTTGTaGGAGCATCCTCCACCGAGC +
Preference number: 4 (lower is better)
Translates to: GHKLAMEDILFTGVSWPEPSSGL*EHPPPS
Trigger: GCTCGGTGGAGGATGCTCTCACAAGCCTGAAGATGG...TTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCCAGCTTATGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp ATGGCCAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAGGTCCTGCCTCTGTGTaGTGGAGGCTCCCAAGTTCC +
Preference number: 4 (lower is better)
Translates to: MARISKKKAEESKLVCPPGPASV*WRLPSS
Trigger: GGAACTTGGGAGCCTCCATCACACAGAGGCAGGACC...TGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTGGCCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp CCAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTAACAGCACCTGCAGCTaGTGCTCCAGGGACACGCCC +
Preference number: 4 (lower is better)
Translates to: PEFQRRRQRSQSLSVPQTNSTCS*CSRDTP
Trigger: GGGCGTGTCCCTGGAGCAGCAGCTGCAGGTGCTGTT...AGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp AATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCAACAGCACCTGCAGCTaGTGCTCCAGGGACACGCCC +
Preference number: 4 (lower is better)
Translates to: NFKEEGRGVKACLSPKLGNSTCS*CSRDTP
Trigger: GGGCGTGTCCCTGGAGCAGCAGCTGCAGGTGCTGTT...GCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp GGTCATAAGCTGGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAAACCTTGAACAGCACCTaGAGCTGCTGCTCCAGGGAC +
Preference number: 4 (lower is better)
Translates to: GHKLAMEDILFTGVSWPETLNST*SCCSRD
Trigger: GTCCCTGGAGCAGCAGCTGCAGGTGCTGTTCAAGGT...TTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCCAGCTTATGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp ACTCAACCTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACACAGGCTGCAGAGAAGTaGTGTAGCGAGGCCATACTG +
Preference number: 4 (lower is better)
Translates to: TQPPFPILCPQPKATATTQAAEK*CSEAIL
Trigger: CAGTATGGCCTCGCTACAGCACTTCTCTGCAGCCTG...TGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAGGTTGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp ACTCAACCTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAATGGCCCGCTTCCAGTaGGAGTCTTTCTGCATGGCA +
Preference number: 4 (lower is better)
Translates to: TQPPFPILCPQPKATATTMARFQ*ESFCMA
Trigger: TGCCATGCAGAAAGACTCCCACTGGAAGCGGGCCAT...TGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAGGTTGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp GGTCATAAGCTGGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAAGCATCTTCAGCACATTaGCCTGGGCTGAGCCTGCTG +
Preference number: 4 (lower is better)
Translates to: GHKLAMEDILFTGVSWPEASSAH*PGLSLL
Trigger: CAGCAGGCTCAGCCCAGGCCAATGTGCTGAAGATGC...TTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCCAGCTTATGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp CATAAGCTGGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAATTTGCCAGGGACTGTGGCTaGAACAGGGTGGAGGGTGAC +
Preference number: 4 (lower is better)
Translates to: HKLAMEDILFTGVSWPEFARDCG*NRVEGD
Trigger: GTCACCCTCCACCCTGTTCCAGCCACAGTCCCTGGC...AAATTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCCAGCTTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp AATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCGGTACTAACCACACGTaGCCGGGTCCCACCAAGCCA +
Preference number: 4 (lower is better)
Translates to: NFKEEGRGVKACLSPKLGGTNHT*PGPTKP
Trigger: TGGCTTGGTGGGACCCGGTCACGTGTGGTTAGTACC...GCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp TTTACTCCCTGGGACTGCAAGACTTCACGTGATGAGCAAGATCCCAGCCCACACCAGGGCTCTCCACAATaGCAAAAGGCCTTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: FTPWDCKTSRDEQDPSPHQGSPQ*QKAFLP
Trigger: TGGAAGAAAGGCCTTTTGTCATTGTGGAGAGCCCTG...GTGTGGGCTGGGATCTTGCTCATCACGTGAAGTCTTGCAGTCCCAGGGAGTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp TTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGCCCTTGGCCAGCTTCTTaGGGATGTCGATGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: FQFCVPNPRPQQPQLGNGPWPAS*GCRCRS
Trigger: GCTTCTGCATCGACATCCTCAAGAAGCTGGCCAAGG...GCCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp GGTCATAAGCTGGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAAATCTCCCAGAGGCGATaGCGGTTGAGAGCGATCACA +
Preference number: 4 (lower is better)
Translates to: GHKLAMEDILFTGVSWPEISQRR*RLRAIT
Trigger: TGTGATCGCTCTCAACCGGCATCGCCTCTGGGAGAT...TTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCCAGCTTATGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp GGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAATTTCAAAGAAGCGAACCCTCTTGCCGTaGTTGCCGTTGGTCACCAGG +
Preference number: 4 (lower is better)
Translates to: GHGRYPFHWGLMARISKKRTLLP*LPLVTR
Trigger: CCTGGTGACCAACGGCAAGCACGGCAAGAGGGTTCG...CTTCTTTGAAATTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp GGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAATTTCAAAGAAGCTAGCCCCAGGGTCCTaGCTCTGTGTGATGGAGGCT +
Preference number: 4 (lower is better)
Translates to: GHGRYPFHWGLMARISKKLAPGS*LCVMEA
Trigger: AGCCTCCATCACACAGAGGCAGGACCCTGGGGCTAG...CTTCTTTGAAATTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp CATAAGCTGGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAATTTCACCGAGGGCCAGAATaGCTACACCGTCGCGGACTT +
Preference number: 4 (lower is better)
Translates to: HKLAMEDILFTGVSWPEFHRGPE*LHRRGL
Trigger: AAGTCCGCGACGGTGTAGCCATTCTGGCCCTCGGTG...AAATTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCCAGCTTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp ATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCACAACCATTGTGGGCTaGACCAGGTACCCACCAGGG +
Preference number: 4 (lower is better)
Translates to: ISKKKAEESKLVCPPNLATTIVG*TRYPPG
Trigger: CCCTGGTGGGTACCTGGTCCAGCCCACAATGGTTGT...GGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp CTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAGGGAGTCTTTCTGCATaGCAATGCCATAGCCAGTGG +
Preference number: 4 (lower is better)
Translates to: LRFQFCVPNPRPQQPQLGGSLSA*QCHSQW
Trigger: CCACTGGCTATGGCATTGCCATGCAGAAAGACTCCC...TCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp TTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGCCCAGCTGGGATGAGCTaGGCACTGAGTGTCGAAGTT +
Preference number: 4 (lower is better)
Translates to: FQFCVPNPRPQQPQLGNGPAGMS*ALSVEV
Trigger: AACTTCGACACTCAGTGCCCAGCTCATCCCAGCTGG...GCCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp TTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCAAGCAGGAAGTCCAGCTaGGATGAGCTGGGCACTGAG +
Preference number: 4 (lower is better)
Translates to: FQRRRQRSQSLSVPQTWPSRKSS*DELGTE
Trigger: CTCAGTGCCCAGCTCATCCCAGCTGGACTTCCTGCT...TGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp TTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGCCCAGGTGCAGGACCTTaGAAACCCTTGTGTCCCACA +
Preference number: 4 (lower is better)
Translates to: FQFCVPNPRPQQPQLGNGPGAGP*KPLCPT
Trigger: TGTGGGACACAAGGGTTTCCAAGGTCCTGCACCTGG...GCCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp TTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCAATTCCTCCAGCACCTTaGACAGCACCTGCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: FQRRRQRSQSLSVPQTWPIPPAP*TAPAAA
Trigger: AGCAGCTGCAGGTGCTGTTCAAGGTGCTGGAGGAAT...TGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp ATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCCCTTGGCCAGCTTCTTaGGGATGTCGATGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: ISKKKAEESKLVCPPNLAPWPAS*GCRCRS
Trigger: GCTTCTGCATCGACATCCTCAAGAAGCTGGCCAAGG...GGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp CCAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGCCCGCCATGTAGTTaGGGACGGCGGCATCATAGA +
Preference number: 4 (lower is better)
Translates to: PEFQRRRQRSQSLSVPQTCPPCS*GRRHHR
Trigger: TCTATGATGCCGCCGTCCTCAACTACATGGCGGGCA...AGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp AATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCGGTGCCGTTGCTCCTTaGCACCATCACACTGATGCC +
Preference number: 4 (lower is better)
Translates to: NFKEEGRGVKACLSPKLGGAVAP*HHHTDA
Trigger: GGCATCAGTGTGATGGTGGCAAGGAGCAACGGCACC...GCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp AATGTTCCTATGAAAAGAAATTCCAACCAATTGGAGCAAAAGGTGAGTTGGCCCGGCCTGGGCCTGCAGTaGCCCAGAGCTGCCAAACAC +
Preference number: 4 (lower is better)
Translates to: NVPMKRNSNQLEQKVSWPGLGLQ*PRAAKH
Trigger: GTGTTTGGCAGCTCTGGGCCACTGCAGGCCCAGGCC...GGGCCAACTCACCTTTTGCTCCAATTGGTTGGAATTTCTTTTCATAGGAACATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp TTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGCTGACGCCATCGATGTATTGTTCCTaGATCATGAAGGCTGCCAGA +
Preference number: 4 (lower is better)
Translates to: LCPQPKATATTTRKWLTPSMYCS*IMKAAR
Trigger: TCTGGCAGCCTTCATGATCCAGGAACAATACATCGA...TGGCGTCAGCCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp ATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCGCCAAAACGGAAGGGTaGGTATTGGTCTTGAGGCCG +
Preference number: 4 (lower is better)
Translates to: ISKKKAEESKLVCPPNLAAKTEG*VLVLRP
Trigger: CGGCCTCAAGACCAATACCCACCCTTCCGTTTTGGC...GGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp TTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCACCAGCTGGGATGAGCTaGGCACTGAGTGTCGAAGTT +
Preference number: 4 (lower is better)
Translates to: FQRRRQRSQSLSVPQTWPPAGMS*ALSVEV
Trigger: AACTTCGACACTCAGTGCCCAGCTCATCCCAGCTGG...TGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp AATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCAGCAGGAAGTCCAGCTaGGATGAGCTGGGCACTGAG +
Preference number: 4 (lower is better)
Translates to: NFKEEGRGVKACLSPKLGSRKSS*DELGTE
Trigger: CTCAGTGCCCAGCTCATCCCAGCTGGACTTCCTGCT...GCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp CAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTTGCCCCAGTTCTCGATaGTACGAGTGGCGCGGTCCA +
Preference number: 4 (lower is better)
Translates to: QNFKEEGRGVKACLSPKLCPSSR*YEWRGP
Trigger: TGGACCGCGCCACTCGTACCATCGAGAACTGGGGCA...AAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp AGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGCAGCAGAACGGCAGGTaGGTATGGGTGTGCAGGCAG +
Preference number: 4 (lower is better)
Translates to: RISKKKAEESKLVCPPNLQQNGR*VWVCRQ
Trigger: CTGCCTGCACACCCATACCCACCTGCCGTTCTGCTG...CAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp CCAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTATTCCTCCAGCACCTTaGACAGCACCTGCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: PEFQRRRQRSQSLSVPQTIPPAP*TAPAAA
Trigger: AGCAGCTGCAGGTGCTGTTCAAGGTGCTGGAGGAAT...AGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp CAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTCTCGGCCTTCCCAGGTaGCATTCAGCAGATGCCTGT +
Preference number: 4 (lower is better)
Translates to: QNFKEEGRGVKACLSPKLLGLPR*HSADAC
Trigger: ACAGGCATCTGCTGAATGTCACCTGGGAAGGCCGAG...AAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp TTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGTTATATCCCCGCTGCTaGAGGTGTGGTTGCTCTGTC +
Preference number: 4 (lower is better)
Translates to: FPILCPQPKATATTTRKWLYPRC*RCGCSV
Trigger: GACAGAGCAACCACACCTTCAGCAGCGGGGATATAA...CCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp CAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTTGCCAGACCCAATGGTaGCCAGCTTGCAGCCTTCGT +
Preference number: 4 (lower is better)
Translates to: QNFKEEGRGVKACLSPKLCQTQW*PACSLR
Trigger: ACGAAGGCTGCAAGCTGGTCACCATTGGGTCTGGCA...AAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp GGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAATTTCAAAGAAGTGTAGATGCCCCTGCTaGAAGCCAGCAGGAAGTCCA +
Preference number: 4 (lower is better)
Translates to: GHGRYPFHWGLMARISKKCRCPC*KPAGSP
Trigger: TGGACTTCCTGCTGGCTTTCAGCAGGGGCATCTACA...CTTCTTTGAAATTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp CAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTCACCACGAACCCTCTTaGCGTGCTTGCCGTTGGTCA +
Preference number: 4 (lower is better)
Translates to: QNFKEEGRGVKACLSPKLHHEPS*RACRWS
Trigger: TGACCAACGGCAAGCACGGCAAGAGGGTTCGTGGTG...AAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp CCAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTAGGTGGGTATGGGTGTaGAGGCAGACATGCTGTCTG +
Preference number: 4 (lower is better)
Translates to: PEFQRRRQRSQSLSVPQTRWVWV*RQTCCL
Trigger: CAGACAGCATGTCTGCCTGCACACCCATACCCACCT...AGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp GGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAATTTCAAAGAAGAGGTGGGTATGGGTGTaGAGGCAGACATGCTGTCTG +
Preference number: 4 (lower is better)
Translates to: GHGRYPFHWGLMARISKKRWVWV*RQTCCL
Trigger: CAGACAGCATGTCTGCCTGCACACCCATACCCACCT...CTTCTTTGAAATTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp AATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCGATCACAACCATTGTaGGCTGGACCAGGTACCCAC +
Preference number: 4 (lower is better)
Translates to: NFKEEGRGVKACLSPKLGRSQPL*AGPGTH
Trigger: GTGGGTACCTGGTCCAGCCCACAATGGTTGTGATCG...GCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp CATAAGCTGGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAATTTATGGCCCGCTTCCAGTaGGAGTCTTTCTGCATGGCA +
Preference number: 4 (lower is better)
Translates to: HKLAMEDILFTGVSWPEFMARFQ*ESFCMA
Trigger: TGCCATGCAGAAAGACTCCCACTGGAAGCGGGCCAT...AAATTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCCAGCTTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp GGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAATTTCAAAGAAGCCAGGTGCAGGACCTTaGAAACCCTTGTGTCCCACA +
Preference number: 4 (lower is better)
Translates to: GHGRYPFHWGLMARISKKPGAGP*KPLCPT
Trigger: TGTGGGACACAAGGGTTTCCAAGGTCCTGCACCTGG...CTTCTTTGAAATTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
3UTR CAA 72 bp CCAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTaGTCTGTCCCCCAAACTTGGCCAAGACCAGCCACA +
Preference number: 4 (lower is better)
Translates to: PEFQRRRQRSQS*SVPQTWPRPAT
Trigger: TGTGGCTGGTCTTGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp AATGTTCCTATGAAAAGAAATTCCAACCAATTGGAGCAAAAGGTGAGTTGGCCCGCCCACAGATTTGGGTaGGGATGCTGCTGGGGTTGG +
Preference number: 4 (lower is better)
Translates to: NVPMKRNSNQLEQKVSWPAHRFG*GCCWGW
Trigger: CCAACCCCAGCAGCATCCTCACCCAAATCTGTGGGC...GGGCCAACTCACCTTTTGCTCCAATTGGTTGGAATTTCTTTTCATAGGAACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp GAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACGAAGTCTATAATCTCTaGGCGCTCTTCATTGATGGT +
Preference number: 4 (lower is better)
Translates to: EMADARTGTHFYSLGLQDEVYNL*ALFIDG
Trigger: ACCATCAATGAAGAGCGCTCAGAGATTATAGACTTC...GTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp CCAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTGTTGTTGAAGACCAGTaGCCACAGCAACCACACGGA +
Preference number: 4 (lower is better)
Translates to: PEFQRRRQRSQSLSVPQTVVEDQ*PQQPHG
Trigger: TCCGTGTGGTTGCTGTGGGCACTGGTCTTCAACAAC...AGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp CTCAACCTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAAGCATGTCACGATAGTTaGTACGAATGTTCCTCTCTG +
Preference number: 4 (lower is better)
Translates to: LNLRFQFCVPNPRPQQPQACHDS*YECSSL
Trigger: CAGAGAGGAACATTCGTAGCAACTATCGTGACATGC...TTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAGGTTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp AATGTTCCTATGAAAAGAAATTCCAACCAATTGGAGCAAAAGGTGAGTTGGCCCTGCCCCAGTTCTCGATaGTACGAGTGGCGCGGTCCA +
Preference number: 4 (lower is better)
Translates to: NVPMKRNSNQLEQKVSWPCPSSR*YEWRGP
Trigger: TGGACCGCGCCACTCGTACCATCGAGAACTGGGGCA...GGGCCAACTCACCTTTTGCTCCAATTGGTTGGAATTTCTTTTCATAGGAACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp ACCACAACTAGGAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGAAGTCTATAATCTCTaGGCGCTCTTCATTGATGGT +
Preference number: 4 (lower is better)
Translates to: TTTRKWLTPGQGHIFTPWEVYNL*ALFIDG
Trigger: ACCATCAATGAAGAGCGCTCAGAGATTATAGACTTC...CCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTCCTAGTTGTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp AATGTTCCTATGAAAAGAAATTCCAACCAATTGGAGCAAAAGGTGAGTTGGCCCAAGTCCAGGAAGTTCTaGGGGGTGAGACGAGTCCGG +
Preference number: 4 (lower is better)
Translates to: NVPMKRNSNQLEQKVSWPKSRKF*GVRRVR
Trigger: CCGGACTCGTCTCACCCCGCAGAACTTCCTGGACTT...GGGCCAACTCACCTTTTGCTCCAATTGGTTGGAATTTCTTTTCATAGGAACATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp ATGGCCAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAGTAGCGAGGCCATACTaGATACTTCATGTACAGGAC +
Preference number: 4 (lower is better)
Translates to: MARISKKKAEESKLVCPPVARPY*ILHVQD
Trigger: GTCCTGTACATGAAGTATCCAGTATGGCCTCGCTAC...TGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTGGCCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp CAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGGAGTCTTTCTGCATaGCAATGCCATAGCCAGTGG +
Preference number: 4 (lower is better)
Translates to: QNFKEEGRGVKACLSPKLGSLSA*QCHSQW
Trigger: CCACTGGCTATGGCATTGCCATGCAGAAAGACTCCC...AAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp TTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGTCGATGTATTGTTCCTaGATCATGAAGGCTGCCAGA +
Preference number: 4 (lower is better)
Translates to: FPILCPQPKATATTTRKWSMYCS*IMKAAR
Trigger: TCTGGCAGCCTTCATGATCCAGGAACAATACATCGA...CCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CCA 90 bp AATGTTCCTATGAAAAGAAATTCCAACCAATTGGAGCAAAAGGTGAGTTGGCCCGCCAAAACGGAAGGGTaGGTATTGGTCTTGAGGCCG +
Preference number: 4 (lower is better)
Translates to: NVPMKRNSNQLEQKVSWPAKTEG*VLVLRP
Trigger: CGGCCTCAAGACCAATACCCACCCTTCCGTTTTGGC...GGGCCAACTCACCTTTTGCTCCAATTGGTTGGAATTTCTTTTCATAGGAACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR TCA 90 bp AATGTTCCTATGAAAAGAAATTCCAACCAATTGGAGCAAAAGGTGAGTTGGCCCAGTCGTAGGAGAACTTaGCCACCTTGGCCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: NVPMKRNSNQLEQKVSWPSRRRT*PPWPAS
Trigger: AGAAGCTGGCCAAGGTGGTCAAGTTCTCCTACGACT...GGGCCAACTCACCTTTTGCTCCAATTGGTTGGAATTTCTTTTCATAGGAACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR GCA 90 bp AGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCATGTCACGATAGTTaGTACGAATGTTCCTCTCTG +
Preference number: 4 (lower is better)
Translates to: RISKKKAEESKLVCPPNLACHDS*YECSSL
Trigger: CAGAGAGGAACATTCGTAGCAACTATCGTGACATGC...CAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS TCA 90 bp CGCGCATCCCAAGCGTGCCTGCAGGATGCTCGGGACACGTCGGGCTaGGGCGACCCTGCGCAGGTCGCGGGGCGAGCGGGAGGCTGCGGG +
Preference number: 5 (lower is better)
Translates to: RASQACLQDARDTSG*GDPAQVAGRAGGCG
Trigger: CCCGCAGCCTCCCGCTCGCCCCGCGACCTGCGCAGGGTCGCCTCAGCCCGACGTGTCCCGAGCATCCTGCAGGCACGCTTGGGATGCGCG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS TCA 90 bp AGCGCTGAGTGCGCGCTCGCGGCCCACCGGGGCCCAGCTCCAGCGTaGGCACGTCCAGCAGCCGCCAGCTCAGGTAGCTGGCGTCGGCGA +
Preference number: 5 (lower is better)
Translates to: SAECALAAHRGPAPA*ARPAAASSGSWRRR
Trigger: TCGCCGACGCCAGCTACCTGAGCTGGCGGCTGCTGGACGTGCTCACGCTGGAGCTGGGCCCCGGTGGGCCGCGAGCGCGCACTCAGCGCT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS TCA 90 bp CGCTCCGGGAGCGCGCGCCGCTCGGAGGCCGAGAGGTGCGATCCCTaGTGCCCGACTCGCACTGGCCACCGCGCATCCCAAGCGTGCCTG +
Preference number: 5 (lower is better)
Translates to: RSGSARRSEAERCDP*CPTRTGHRASQACL
Trigger: CAGGCACGCTTGGGATGCGCGGTGGCCAGTGCGAGTCGGGCATCAGGGATCGCACCTCTCGGCCTCCGAGCGGCGCGCGCTCCCGGAGCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 90 bp CCCGACTCGCACTGGCCACCGCGCATCCCAAGCGTGCCTGCAGGATaGTCGGGACACGTCGGGCTGAGGCGACCCTGCGCAGGTCGCGGG +
Preference number: 5 (lower is better)
Translates to: PDSHWPPRIPSVPAG*SGHVGLRRPCAGRG
Trigger: CCCGCGACCTGCGCAGGGTCGCCTCAGCCCGACGTGTCCCGAGCATCCTGCAGGCACGCTTGGGATGCGCGGTGGCCAGTGCGAGTCGGG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 90 bp CCTGATGCCCGACTCGCACTGGCCACCGCGCATCCCAAGCGTGCCTaGAGGATGCTCGGGACACGTCGGGCTGAGGCGACCCTGCGCAGG +
Preference number: 5 (lower is better)
Translates to: PDARLALATAHPKRA*RMLGTRRAEATLRR
Trigger: CCTGCGCAGGGTCGCCTCAGCCCGACGTGTCCCGAGCATCCTGCAGGCACGCTTGGGATGCGCGGTGGCCAGTGCGAGTCGGGCATCAGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 90 bp GTGCAGGCAGACATGCTGTCTGGGCTGCCAGGTGGCGGCCACCCCTaGTGGCACGCCCTCCACACAGGCCTCCCGGTAGGATGGCAGCCG +
Preference number: 5 (lower is better)
Translates to: VQADMLSGLPGGGHP*WHALHTGLPVGWQP
Trigger: CGGCTGCCATCCTACCGGGAGGCCTGTGTGGAGGGCGTGCCAGCAGGGGTGGCCGCCACCTGGCAGCCCAGACAGCATGTCTGCCTGCAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 90 bp TCGGCGACGGCGCGCACGCCCTCGAGGAAGAGCGCGTGGCCCGGGTaGAGGCTGGTGATGACAGCGAACGCGCTCCAGTCGTATTCCTCC +
Preference number: 5 (lower is better)
Translates to: SATARTPSRKSAWPG*RLVMTANALQSYSS
Trigger: GGAGGAATACGACTGGAGCGCGTTCGCTGTCATCACCAGCCTGCACCCGGGCCACGCGCTCTTCCTCGAGGGCGTGCGCGCCGTCGCCGA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 90 bp GTCCCCCAGCAGAACGGCAGGTGGGTATGGGTGTGCAGGCAGACATaGTGTCTGGGCTGCCAGGTGGCGGCCACCCCTGCTGGCACGCCC +
Preference number: 5 (lower is better)
Translates to: VPQQNGRWVWVCRQT*CLGCQVAATPAGTP
Trigger: GGGCGTGCCAGCAGGGGTGGCCGCCACCTGGCAGCCCAGACAGCATGTCTGCCTGCACACCCATACCCACCTGCCGTTCTGCTGGGGGAC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 90 bp AGGGCTGACGGGTCCTGGGTGGCTTCGGCAGTCTCCAGCCGGGGCTaGAAGGGTACCGTACTGGCGTCGGTAGCTGTGGGCACCGAGGGC +
Preference number: 5 (lower is better)
Translates to: RADGSWVASAVSSRG*KGTVLASVAVGTEG
Trigger: GCCCTCGGTGCCCACAGCTACCGACGCCAGTACGGTACCCTTCCAGCCCCGGCTGGAGACTGCCGAAGCCACCCAGGACCCGTCAGCCCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 90 bp CCGCTCGGAGGCCGAGAGGTGCGATCCCTGATGCCCGACTCGCACTaGCCACCGCGCATCCCAAGCGTGCCTGCAGGATGCTCGGGACAC +
Preference number: 5 (lower is better)
Translates to: PLGGREVRSLMPDSH*PPRIPSVPAGCSGH
Trigger: GTGTCCCGAGCATCCTGCAGGCACGCTTGGGATGCGCGGTGGCCAGTGCGAGTCGGGCATCAGGGATCGCACCTCTCGGCCTCCGAGCGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 90 bp CAGGCAGACATGCTGTCTGGGCTGCCAGGTGGCGGCCACCCCTGCTaGCACGCCCTCCACACAGGCCTCCCGGTAGGATGGCAGCCGCAA +
Preference number: 5 (lower is better)
Translates to: QADMLSGLPGGGHPC*HALHTGLPVGWQPQ
Trigger: TTGCGGCTGCCATCCTACCGGGAGGCCTGTGTGGAGGGCGTGCCAGCAGGGGTGGCCGCCACCTGGCAGCCCAGACAGCATGTCTGCCTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 90 bp GGTGGGTATGGGTGTGCAGGCAGACATGCTGTCTGGGCTGCCAGGTaGCGGCCACCCCTGCTGGCACGCCCTCCACACAGGCCTCCCGGT +
Preference number: 5 (lower is better)
Translates to: GGYGCAGRHAVWAAR*RPPLLARPPHRPPG
Trigger: ACCGGGAGGCCTGTGTGGAGGGCGTGCCAGCAGGGGTGGCCGCCACCTGGCAGCCCAGACAGCATGTCTGCCTGCACACCCATACCCACC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 90 bp ATGACCGCGGGCCGGAGGTGGTGGGAGCAGGCGCGCGGCGATTGTTaGCCCAGTTCTCGATGGTACGAGTGGCGCGGTCCAAAGAGCCGC +
Preference number: 5 (lower is better)
Translates to: MTAGRRWWEQARGDC*PSSRWYEWRGPKSR
Trigger: GCGGCTCTTTGGACCGCGCCACTCGTACCATCGAGAACTGGGGCAACAATCGCCGCGCGCCTGCTCCCACCACCTCCGGCCCGCGGTCAT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 90 bp ACCGGTACACCTGGCAGGCAGAGGGTTGGATCGAGTGAAGGCTTCTaGCACGGAGCTGGGCAGGGAAGCGTGCCGAGGGCGCGGGCCCCT +
Preference number: 5 (lower is better)
Translates to: TGTPGRQRVGSSEGF*HGAGQGSVPRARAP
Trigger: AGGGGCCCGCGCCCTCGGCACGCTTCCCTGCCCAGCTCCGTGGCAGAAGCCTTCACTCGATCCAACCCTCTGCCTGCCAGGTGTACCGGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 90 bp AACGGCAGGTGGGTATGGGTGTGCAGGCAGACATGCTGTCTGGGCTaGCAGGTGGCGGCCACCCCTGCTGGCACGCCCTCCACACAGGCC +
Preference number: 5 (lower is better)
Translates to: NGRWVWVCRQTCCLG*QVAATPAGTPSTQA
Trigger: GGCCTGTGTGGAGGGCGTGCCAGCAGGGGTGGCCGCCACCTGGCAGCCCAGACAGCATGTCTGCCTGCACACCCATACCCACCTGCCGTT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 90 bp GGCCACCCCTGCTGGCACGCCCTCCACACAGGCCTCCCGGTAGGATaGCAGCCGCAACGACTGTGTTTGAGCCACGTGCCGGCAGGATGG +
Preference number: 5 (lower is better)
Translates to: GHPCWHALHTGLPVG*QPQRLCLSHVPAGW
Trigger: CCATCCTGCCGGCACGTGGCTCAAACACAGTCGTTGCGGCTGCCATCCTACCGGGAGGCCTGTGTGGAGGGCGTGCCAGCAGGGGTGGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS TCA 90 bp CGCAGGCGTGACCGGTACACCTGGCAGGCAGAGGGTTGGATCGAGTaGAGGCTTCTGCCACGGAGCTGGGCAGGGAAGCGTGCCGAGGGC +
Preference number: 5 (lower is better)
Translates to: RRRDRYTWQAEGWIE*RLLPRSWAGKRAEG
Trigger: GCCCTCGGCACGCTTCCCTGCCCAGCTCCGTGGCAGAAGCCTTCACTCGATCCAACCCTCTGCCTGCCAGGTGTACCGGTCACGCCTGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 90 bp AAGTCCAGGAAGTTCTGCGGGGTGAGACGAGTCCGGGCCTGGGCCTaGAGTGGCCCAGAGCTGCCAAACACCACCGCCACGGTCACGGCC +
Preference number: 5 (lower is better)
Translates to: KSRKFCGVRRVRAWA*SGPELPNTTATVTA
Trigger: GGCCGTGACCGTGGCGGTGGTGTTTGGCAGCTCTGGGCCACTGCAGGCCCAGGCCCGGACTCGTCTCACCCCGCAGAACTTCCTGGACTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 90 bp AGCAGAACGGCAGGTGGGTATGGGTGTGCAGGCAGACATGCTGTCTaGGCTGCCAGGTGGCGGCCACCCCTGCTGGCACGCCCTCCACAC +
Preference number: 5 (lower is better)
Translates to: SRTAGGYGCAGRHAV*AARWRPPLLARPPH
Trigger: GTGTGGAGGGCGTGCCAGCAGGGGTGGCCGCCACCTGGCAGCCCAGACAGCATGTCTGCCTGCACACCCATACCCACCTGCCGTTCTGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 90 bp AGAGGCAAGTCCAGGAAGTTCTGCGGGGTGAGACGAGTCCGGGCCTaGGCCTGCAGTGGCCCAGAGCTGCCAAACACCACCGCCACGGTC +
Preference number: 5 (lower is better)
Translates to: RGKSRKFCGVRRVRA*ACSGPELPNTTATV
Trigger: GACCGTGGCGGTGGTGTTTGGCAGCTCTGGGCCACTGCAGGCCCAGGCCCGGACTCGTCTCACCCCGCAGAACTTCCTGGACTTGCCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 90 bp AGGTGGTGGGAGCAGGCGCGCGGCGATTGTTGCCCCAGTTCTCGATaGTACGAGTGGCGCGGTCCAAAGAGCCGCTCACGTCCGCTGTGC +
Preference number: 5 (lower is better)
Translates to: RWWEQARGDCCPSSR*YEWRGPKSRSRPLC
Trigger: GCACAGCGGACGTGAGCGGCTCTTTGGACCGCGCCACTCGTACCATCGAGAACTGGGGCAACAATCGCCGCGCGCCTGCTCCCACCACCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 90 bp CCAGAGCTGCCAAACACCACCGCCACGGTCACGGCCTGTTCTCCCTaGCCTGCGCCCAGCCCTGCCCAAGCACCAAGGAGTGAAGTGAGA +
Preference number: 5 (lower is better)
Translates to: PELPNTTATVTACSP*PAPSPAQAPRSEVR
Trigger: TCTCACTTCACTCCTTGGTGCTTGGGCAGGGCTGGGCGCAGGGCAGGGAGAACAGGCCGTGACCGTGGCGGTGGTGTTTGGCAGCTCTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 90 bp CCGATGGTGAGTGGCTGGATCTCCAGAGGCAAGTCCAGGAAGTTCTaGGGGGTGAGACGAGTCCGGGCCTGGGCCTGCAGTGGCCCAGAG +
Preference number: 5 (lower is better)
Translates to: PMVSGWISRGKSRKF*GVRRVRAWACSGPE
Trigger: CTCTGGGCCACTGCAGGCCCAGGCCCGGACTCGTCTCACCCCGCAGAACTTCCTGGACTTGCCTCTGGAGATCCAGCCACTCACCATCGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 90 bp CAGCAGATGCCTGTAGAAAGCCTCCCTGGCAGGGCTGACGGGTCCTaGGTGGCTTCGGCAGTCTCCAGCCGGGGCTGGAAGGGTACCGTA +
Preference number: 5 (lower is better)
Translates to: QQMPVESLPGRADGS*VASAVSSRGWKGTV
Trigger: TACGGTACCCTTCCAGCCCCGGCTGGAGACTGCCGAAGCCACCCAGGACCCGTCAGCCCTGCCAGGGAGGCTTTCTACAGGCATCTGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 90 bp GAGCAGGCGCGCGGCGATTGTTGCCCCAGTTCTCGATGGTACGAGTaGCGCGGTCCAAAGAGCCGCTCACGTCCGCTGTGCTCACCATGT +
Preference number: 5 (lower is better)
Translates to: EQARGDCCPSSRWYE*RGPKSRSRPLCSPC
Trigger: ACATGGTGAGCACAGCGGACGTGAGCGGCTCTTTGGACCGCGCCACTCGTACCATCGAGAACTGGGGCAACAATCGCCGCGCGCCTGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS TCA 90 bp CCCCATGATCCCACCGTCCCACCATCTCCCAGAGGCGATGCCGGTTaGGAGCGATCACAACCATTGTGGGCTGGACCAGGTACCCACCAG +
Preference number: 5 (lower is better)
Translates to: PHDPTVPPSPRGDAG*ERSQPLWAGPGTHQ
Trigger: CTGGTGGGTACCTGGTCCAGCCCACAATGGTTGTGATCGCTCTCAACCGGCATCGCCTCTGGGAGATGGTGGGACGGTGGGATCATGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS TCA 90 bp CAAGTTCCAATGAGCCAGGGACTGTGGCTGGAACAGGGTGGAGGGTaGCGGCAGACAGTCCCCCAGCAGAACGGCAGGTGGGTATGGGTG +
Preference number: 5 (lower is better)
Translates to: QVPMSQGLWLEQGGG*RQTVPQQNGRWVWV
Trigger: CACCCATACCCACCTGCCGTTCTGCTGGGGGACTGTCTGCCGTCACCCTCCACCCTGTTCCAGCCACAGTCCCTGGCTCATTGGAACTTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 90 bp CGATGGTACGAGTGGCGCGGTCCAAAGAGCCGCTCACGTCCGCTGTaGTCACCATGTCTCGAGCCGCCTGCAGCATCTTCAGCACATTGG +
Preference number: 5 (lower is better)
Translates to: RWYEWRGPKSRSRPL*SPCLEPPAASSAHW
Trigger: CCAATGTGCTGAAGATGCTGCAGGCGGCTCGAGACATGGTGAGCACAGCGGACGTGAGCGGCTCTTTGGACCGCGCCACTCGTACCATCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 90 bp CTGTGGGCACCGAGGGCCAGAATGGCTACACCGTCGCGGACTTTCTaGCGTAGGCTAAGGCGCCAACTCTCGGTGACCACACTGATGAGG +
Preference number: 5 (lower is better)
Translates to: LWAPRARMATPSRTF*RRLRRQLSVTTLMR
Trigger: CCTCATCAGTGTGGTCACCGAGAGTTGGCGCCTTAGCCTACGCCAGAAAGTCCGCGACGGTGTAGCCATTCTGGCCCTCGGTGCCCACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 90 bp AAAGAGCCGCTCACGTCCGCTGTGCTCACCATGTCTCGAGCCGCCTaGAGCATCTTCAGCACATTGGCCTGGGCTGAGCCTGCTGTAAGG +
Preference number: 5 (lower is better)
Translates to: KEPLTSAVLTMSRAA*SIFSTLAWAEPAVR
Trigger: CCTTACAGCAGGCTCAGCCCAGGCCAATGTGCTGAAGATGCTGCAGGCGGCTCGAGACATGGTGAGCACAGCGGACGTGAGCGGCTCTTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 90 bp AAGACGATGCCGTGGACTCGGGCGGCACCCAGGAGCCCACAGATTTaGGTGAGGATGCTGCTGGGGTTGGTATTGTTGACCCCGATGGTG +
Preference number: 5 (lower is better)
Translates to: KTMPWTRAAPRSPQI*VRMLLGLVLLTPMV
Trigger: CACCATCGGGGTCAACAATACCAACCCCAGCAGCATCCTCACCCAAATCTGTGGGCTCCTGGGTGCCGCCCGAGTCCACGGCATCGTCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp AGGAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGGCGGAGCCTGGCTCCTaGGGGGTGAGGACCACAGCA +
Preference number: 5 (lower is better)
Translates to: RKWLTPGQGHIFTPWDCKAEPGS*GVRTTA
Trigger: TGCTGTGGTCCTCACCCCCAAGGAGCCAGGCTCCGC...CTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 90 bp TCCCAGAGGCGATGCCGGTTGAGAGCGATCACAACCATTGTGGGCTaGACCAGGTACCCACCAGGGCTAAAAGAGAAGTCTCGGCCTTCC +
Preference number: 5 (lower is better)
Translates to: SQRRCRLRAITTIVG*TRYPPGLKEKSRPS
Trigger: GGAAGGCCGAGACTTCTCTTTTAGCCCTGGTGGGTACCTGGTCCAGCCCACAATGGTTGTGATCGCTCTCAACCGGCATCGCCTCTGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp CTCAACCTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAAGCGGAGCCTGGCTCCTaGGGGGTGAGGACCACAGCA +
Preference number: 5 (lower is better)
Translates to: LNLRFQFCVPNPRPQQPQAEPGS*GVRTTA
Trigger: TGCTGTGGTCCTCACCCCCAAGGAGCCAGGCTCCGC...TTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAGGTTGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp TTGGCCAAGACCAGCCACAGAATCCAGTCCAGCAGGAACCAGAGCTGCCGGTACGAGCGATCACAACCATaGTGGGCTGGACCAGGTACC +
Preference number: 5 (lower is better)
Translates to: LAKTSHRIQSSRNQSCRYERSQP*WAGPGT
Trigger: GGTACCTGGTCCAGCCCACAATGGTTGTGATCGCTC...GTACCGGCAGCTCTGGTTCCTGCTGGACTGGATTCTGTGGCTGGTCTTGGCCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp GAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACACCAGGACCATGATCTaGCTGGTGGTGCCCCGGGGG +
Preference number: 5 (lower is better)
Translates to: EMADARTGTHFYSLGLQDTRTMI*LVVPRG
Trigger: CCCCCGGGGCACCACCAGCAAGATCATGGTCCTGGT...GTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp TTGGCCAAGACCAGCCACAGAATCCAGTCCAGCAGGAACCAGAGCTGCCGGTACAGCATCTTCAGCACATaGGCCTGGGCTGAGCCTGCT +
Preference number: 5 (lower is better)
Translates to: LAKTSHRIQSSRNQSCRYSIFST*AWAEPA
Trigger: AGCAGGCTCAGCCCAGGCCAATGTGCTGAAGATGCT...GTACCGGCAGCTCTGGTTCCTGCTGGACTGGATTCTGTGGCTGGTCTTGGCCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp GCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCAAGACCAGCCACAGACTGCTGAAGGTGTGGTaGCTCTGTCTACGGCAGGGC +
Preference number: 5 (lower is better)
Translates to: AEESKLVCPPNLAKTSHRLLKVW*LCLRQG
Trigger: GCCCTGCCGTAGACAGAGCAACCACACCTTCAGCAG...TCTGTGGCTGGTCTTGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp GCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCAAGACCAGCCACAGAACCCTCTTGCCGTGCTaGCCGTTGGTCACCAGGTAC +
Preference number: 5 (lower is better)
Translates to: AEESKLVCPPNLAKTSHRTLLPC*PLVTRY
Trigger: GTACCTGGTGACCAACGGCAAGCACGGCAAGAGGGT...TCTGTGGCTGGTCTTGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp GAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACGGGGAGACGGTGCCGTaGCTCCTTGCCACCATCACA +
Preference number: 5 (lower is better)
Translates to: EMADARTGTHFYSLGLQDGETVP*LLATIT
Trigger: TGTGATGGTGGCAAGGAGCAACGGCACCGTCTCCCC...GTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp TTGGCCAAGACCAGCCACAGAATCCAGTCCAGCAGGAACCAGAGCTGCCGGTACACGGAAGGGTGGGTATaGGTCTTGAGGCCGCTGAAA +
Preference number: 5 (lower is better)
Translates to: LAKTSHRIQSSRNQSCRYTEGWV*VLRPLK
Trigger: TTTCAGCGGCCTCAAGACCAATACCCACCCTTCCGT...GTACCGGCAGCTCTGGTTCCTGCTGGACTGGATTCTGTGGCTGGTCTTGGCCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp ACTCAACCTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAGCAGGATGGCCGGCTTaGGGGACATGGGCAAGCGCA +
Preference number: 5 (lower is better)
Translates to: TQPPFPILCPQPKATATTAGWPA*GTWASA
Trigger: TGCGCTTGCCCATGTCCCCAAAGCCGGCCATCCTGC...TGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAGGTTGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp CTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAGCAGGATGGCCGGCTTaGGGGACATGGGCAAGCGCA +
Preference number: 5 (lower is better)
Translates to: LRFQFCVPNPRPQQPQLGAGWPA*GTWASA
Trigger: TGCGCTTGCCCATGTCCCCAAAGCCGGCCATCCTGC...TCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 90 bp GCTGTCCACCACAGGCTGCAGAGAAGTGCTGTAGCGAGGCCATACTaGATACTTCATGTACAGGACCCCATGATCCCACCGTCCCACCAT +
Preference number: 5 (lower is better)
Translates to: AVHHRLQRSAVARPY*ILHVQDPMIPPSHH
Trigger: ATGGTGGGACGGTGGGATCATGGGGTCCTGTACATGAAGTATCCAGTATGGCCTCGCTACAGCACTTCTCTGCAGCCTGTGGTGGACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp AGGAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACCCTCTTGCCGTGCTaGCCGTTGGTCACCAGGTAC +
Preference number: 5 (lower is better)
Translates to: RKWLTPGQGHIFTPWDCKTLLPC*PLVTRY
Trigger: GTACCTGGTGACCAACGGCAAGCACGGCAAGAGGGT...CTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp TTTACTCCCTGGGACTGCAAGACTTCACGTGATGAGCAAGATCCCAGCCCACACCCAATGGTGACCAGCTaGCAGCCTTCGTCCTTGCCC +
Preference number: 5 (lower is better)
Translates to: FTPWDCKTSRDEQDPSPHPMVTS*QPSSLP
Trigger: GGGCAAGGACGAAGGCTGCAAGCTGGTCACCATTGG...GTGTGGGCTGGGATCTTGCTCATCACGTGAAGTCTTGCAGTCCCAGGGAGTAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp CTCAACCTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAAACACCACGAACCCTCTaGCCGTGCTTGCCGTTGGTC +
Preference number: 5 (lower is better)
Translates to: LNLRFQFCVPNPRPQQPQTPRTL*PCLPLV
Trigger: GACCAACGGCAAGCACGGCAAGAGGGTTCGTGGTGT...TTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAGGTTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp ATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCACCAGGACCATGATCTaGCTGGTGGTGCCCCGGGGG +
Preference number: 5 (lower is better)
Translates to: ISKKKAEESKLVCPPNLATRTMI*LVVPRG
Trigger: CCCCCGGGGCACCACCAGCAAGATCATGGTCCTGGT...GGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp TTTACTCCCTGGGACTGCAAGACTTCACGTGATGAGCAAGATCCCAGCCCACACCTGCTGGGGTTGGTATaGTTGACCCCGATGGTGAGT +
Preference number: 5 (lower is better)
Translates to: FTPWDCKTSRDEQDPSPHLLGLV*LTPMVS
Trigger: ACTCACCATCGGGGTCAACAATACCAACCCCAGCAG...GTGTGGGCTGGGATCTTGCTCATCACGTGAAGTCTTGCAGTCCCAGGGAGTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp TTTACTCCCTGGGACTGCAAGACTTCACGTGATGAGCAAGATCCCAGCCCACACAGGATGCTGCTGGGGTaGGTATTGTTGACCCCGATG +
Preference number: 5 (lower is better)
Translates to: FTPWDCKTSRDEQDPSPHRMLLG*VLLTPM
Trigger: CATCGGGGTCAACAATACCAACCCCAGCAGCATCCT...GTGTGGGCTGGGATCTTGCTCATCACGTGAAGTCTTGCAGTCCCAGGGAGTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp GGTCATAAGCTGGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAACTGCTGAAGGTGTGGTaGCTCTGTCTACGGCAGGGC +
Preference number: 5 (lower is better)
Translates to: GHKLAMEDILFTGVSWPELLKVW*LCLRQG
Trigger: GCCCTGCCGTAGACAGAGCAACCACACCTTCAGCAG...TTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCCAGCTTATGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp TTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGCACACCACGAACCCTCTaGCCGTGCTTGCCGTTGGTC +
Preference number: 5 (lower is better)
Translates to: FQFCVPNPRPQQPQLGNGTPRTL*PCLPLV
Trigger: GACCAACGGCAAGCACGGCAAGAGGGTTCGTGGTGT...GCCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp TGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACTTCAACGGAAGGGTGGGTATaGGTCTTGAGGCCGCTGAAA +
Preference number: 5 (lower is better)
Translates to: WLTPGQGHIFTPWDCKTSTEGWV*VLRPLK
Trigger: TTTCAGCGGCCTCAAGACCAATACCCACCCTTCCGT...TGAAGTCTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp TTTACTCCCTGGGACTGCAAGACTTCACGTGATGAGCAAGATCCCAGCCCACACGGACCTTGGAAACCCTaGTGTCCCACAAGCTTCCCT +
Preference number: 5 (lower is better)
Translates to: FTPWDCKTSRDEQDPSPHGPWKP*CPTSFP
Trigger: AGGGAAGCTTGTGGGACACAAGGGTTTCCAAGGTCC...GTGTGGGCTGGGATCTTGCTCATCACGTGAAGTCTTGCAGTCCCAGGGAGTAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp AGGAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGACCTTGGCCAGCTTCTaGAGGATGTCGATGCAGAAG +
Preference number: 5 (lower is better)
Translates to: RKWLTPGQGHIFTPWDCKTLASF*RMSMQK
Trigger: CTTCTGCATCGACATCCTCAAGAAGCTGGCCAAGGT...CTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp AGGAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGGACTGCAAGTCGATGGGAACAGAGTaGTTGAAGACCAGTGCCCAC +
Preference number: 5 (lower is better)
Translates to: RKWLTPGQGHIFTPWDCKSMGTE*LKTSAH
Trigger: GTGGGCACTGGTCTTCAACAACTCTGTTCCCATCGA...CTTGCAGTCCCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp CTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAGGACCTTGGAAACCCTaGTGTCCCACAAGCTTCCCT +
Preference number: 5 (lower is better)
Translates to: LRFQFCVPNPRPQQPQLGGPWKP*CPTSFP
Trigger: AGGGAAGCTTGTGGGACACAAGGGTTTCCAAGGTCC...TCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp TTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGCTCCAGGTGCAGGACCTaGGAAACCCTTGTGTCCCAC +
Preference number: 5 (lower is better)
Translates to: FQFCVPNPRPQQPQLGNGSRCRT*ETLVSH
Trigger: GTGGGACACAAGGGTTTCCAAGGTCCTGCACCTGGA...GCCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp GGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAATTTCAAAGAAGCAGGAGCCCACAGATTaGGGTGAGGATGCTGCTGGG +
Preference number: 5 (lower is better)
Translates to: GHGRYPFHWGLMARISKKQEPTD*GEDAAG
Trigger: CCCAGCAGCATCCTCACCCAAATCTGTGGGCTCCTG...CTTCTTTGAAATTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp TTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGGCCTCAGTGTCCACGTaGTCCTCAAAGACGATGCCG +
Preference number: 5 (lower is better)
Translates to: FPILCPQPKATATTTRKWASVST*SSKTMP
Trigger: CGGCATCGTCTTTGAGGACAACGTGGACACTGAGGC...CCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp AAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCAAGACCACCTTGGCCAGCTTCTaGAGGATGTCGATGCAGAAG +
Preference number: 5 (lower is better)
Translates to: KKKAEESKLVCPPNLAKTTLASF*RMSMQK
Trigger: CTTCTGCATCGACATCCTCAAGAAGCTGGCCAAGGT...GGTCTTGGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp CTCCGTTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAGAGAACTTGACCACCTaGGCCAGCTTCTTGAGGATG +
Preference number: 5 (lower is better)
Translates to: LRFQFCVPNPRPQQPQLGENLTT*ASFLRM
Trigger: CATCCTCAAGAAGCTGGCCAAGGTGGTCAAGTTCTC...TCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAACGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp CATAAGCTGGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAATTTCCAATGGTGACCAGCTaGCAGCCTTCGTCCTTGCCC +
Preference number: 5 (lower is better)
Translates to: HKLAMEDILFTGVSWPEFPMVTS*QPSSLP
Trigger: GGGCAAGGACGAAGGCTGCAAGCTGGTCACCATTGG...AAATTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCCAGCTTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp GGTCATAAGCTGGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAAGTGGTGGCAAAGACTTaGCCAGACCCAATGGTGACC +
Preference number: 5 (lower is better)
Translates to: GHKLAMEDILFTGVSWPEVVAKT*PDPMVT
Trigger: GGTCACCATTGGGTCTGGCAAAGTCTTTGCCACCAC...TTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCCAGCTTATGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp ATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCCTGCTGGGGTTGGTATaGTTGACCCCGATGGTGAGT +
Preference number: 5 (lower is better)
Translates to: ISKKKAEESKLVCPPNLALLGLV*LTPMVS
Trigger: ACTCACCATCGGGGTCAACAATACCAACCCCAGCAG...GGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp GGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAATTTCAAAGAAGGCCTCAGTGTCCACGTaGTCCTCAAAGACGATGCCG +
Preference number: 5 (lower is better)
Translates to: GHGRYPFHWGLMARISKKASVST*SSKTMP
Trigger: CGGCATCGTCTTTGAGGACAACGTGGACACTGAGGC...CTTCTTTGAAATTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp CATAAGCTGGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAATTTGAGCGATCACAACCATaGTGGGCTGGACCAGGTACC +
Preference number: 5 (lower is better)
Translates to: HKLAMEDILFTGVSWPEFERSQP*WAGPGT
Trigger: GGTACCTGGTCCAGCCCACAATGGTTGTGATCGCTC...AAATTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCCAGCTTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp GGTCATAAGCTGGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAAAGCAACCACACGGACTaGCCAATGGTGAAGGATGGT +
Preference number: 5 (lower is better)
Translates to: GHKLAMEDILFTGVSWPESNHTD*PMVKDG
Trigger: ACCATCCTTCACCATTGGCAAGTCCGTGTGGTTGCT...TTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCCAGCTTATGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp TTTACTCCCTGGGACTGCAAGACTTCACGTGATGAGCAAGATCCCAGCCCACACCACAGTGTCGATGTATaGTTCCTGGATCATGAAGGC +
Preference number: 5 (lower is better)
Translates to: FTPWDCKTSRDEQDPSPHHSVDV*FLDHEG
Trigger: GCCTTCATGATCCAGGAACAATACATCGACACTGTG...GTGTGGGCTGGGATCTTGCTCATCACGTGAAGTCTTGCAGTCCCAGGGAGTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp ATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCCGTGGTGGCAAAGACTTaGCCAGACCCAATGGTGACC +
Preference number: 5 (lower is better)
Translates to: ISKKKAEESKLVCPPNLAVVAKT*PDPMVT
Trigger: GGTCACCATTGGGTCTGGCAAAGTCTTTGCCACCAC...GGCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp GGCCATGGAAGATATCCTTTTCACTGGGGTCTCATGGCCAGAATTTCAAAGAAGAGCATCTTCAGCACATaGGCCTGGGCTGAGCCTGCT +
Preference number: 5 (lower is better)
Translates to: GHGRYPFHWGLMARISKKSIFST*AWAEPA
Trigger: AGCAGGCTCAGCCCAGGCCAATGTGCTGAAGATGCT...CTTCTTTGAAATTCTGGCCATGAGACCCCAGTGAAAAGGATATCTTCCATGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp AATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTGGCAGGATGCTGCTGGGGTaGGTATTGTTGACCCCGATG +
Preference number: 5 (lower is better)
Translates to: NFKEEGRGVKACLSPKLGRMLLG*VLLTPM
Trigger: CATCGGGGTCAACAATACCAACCCCAGCAGCATCCT...GCCAAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp AATGTTCCTATGAAAAGAAATTCCAACCAATTGGAGCAAAAGGTGAGTTGGCCCGGGGAGACGGTGCCGTaGCTCCTTGCCACCATCACA +
Preference number: 5 (lower is better)
Translates to: NVPMKRNSNQLEQKVSWPGETVP*LLATIT
Trigger: TGTGATGGTGGCAAGGAGCAACGGCACCGTCTCCCC...GGGCCAACTCACCTTTTGCTCCAATTGGTTGGAATTTCTTTTCATAGGAACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp ATGGCCAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAGCAACCACACGGACTaGCCAATGGTGAAGGATGGT +
Preference number: 5 (lower is better)
Translates to: MARISKKKAEESKLVCPPSNHTD*PMVKDG
Trigger: ACCATCCTTCACCATTGGCAAGTCCGTGTGGTTGCT...TGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTGGCCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp TTTCCAATTTTGTGTCCCCAACCCAAGGCCACAGCAACCACAACTAGGAAATGGTCGATGGGAACAGAGTaGTTGAAGACCAGTGCCCAC +
Preference number: 5 (lower is better)
Translates to: FPILCPQPKATATTTRKWSMGTE*LKTSAH
Trigger: GTGGGCACTGGTCTTCAACAACTCTGTTCCCATCGA...CCATTTCCTAGTTGTGGTTGCTGTGGCCTTGGGTTGGGGACACAAAATTGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp ACCACAACTAGGAAATGGCTGACGCCAGGACAGGGACACATTTTTACTCCCTGGCACAGTGTCGATGTATaGTTCCTGGATCATGAAGGC +
Preference number: 5 (lower is better)
Translates to: TTTRKWLTPGQGHIFTPWHSVDV*FLDHEG
Trigger: GCCTTCATGATCCAGGAACAATACATCGACACTGTG...CCAGGGAGTAAAAATGTGTCCCTGTCCTGGCGTCAGCCATTTCCTAGTTGTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp ATGGCCAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAGGGTGGGTATTGGTCTaGAGGCCGCTGAAACTTCTT +
Preference number: 5 (lower is better)
Translates to: MARISKKKAEESKLVCPPGWVLV*RPLKLL
Trigger: AAGAAGTTTCAGCGGCCTCAAGACCAATACCCACCC...TGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTGGCCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp CAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTTTCCAGGTGCAGGACCTaGGAAACCCTTGTGTCCCAC +
Preference number: 5 (lower is better)
Translates to: QNFKEEGRGVKACLSPKLSRCRT*ETLVSH
Trigger: GTGGGACACAAGGGTTTCCAAGGTCCTGCACCTGGA...AAGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS-3UTR CAA 90 bp CCAGAATTTCAAAGAAGAAGGCAGAGGAGTCAAAGCTTGTCTGTCCCCCAAACTGGGTGGGTATTGGTCTaGAGGCCGCTGAAACTTCTT +
Preference number: 5 (lower is better)
Translates to: PEFQRRRQRSQSLSVPQTGWVLV*RPLKLL
Trigger: AAGAAGTTTCAGCGGCCTCAAGACCAATACCCACCC...AGTTTGGGGGACAGACAAGCTTTGACTCCTCTGCCTTCTTCTTTGAAATTCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS TCA 72 bp TGCGCGCTCGCGGCCCACCGGGGCCCAGCTCCAGCGTaGGCACGTCCAGCAGCCGCCAGCTCAGGTAGCTGG +
Preference number: 6 (lower is better)
Translates to: CALAAHRGPAPA*ARPAAASSGSW
Trigger: CCAGCTACCTGAGCTGGCGGCTGCTGGACGTGCTCACGCTGGAGCTGGGCCCCGGTGGGCCGCGAGCGCGCA
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS TCA 72 bp CAAGCGTGCCTGCAGGATGCTCGGGACACGTCGGGCTaGGGCGACCCTGCGCAGGTCGCGGGGCGAGCGGGA +
Preference number: 6 (lower is better)
Translates to: QACLQDARDTSG*GDPAQVAGRAG
Trigger: TCCCGCTCGCCCCGCGACCTGCGCAGGGTCGCCTCAGCCCGACGTGTCCCGAGCATCCTGCAGGCACGCTTG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp TCGGCGACGGCGCGCACGCCCTCGAGGAAGAGCGCGTaGCCCGGGTGCAGGCTGGTGATGACAGCGAACGCG +
Preference number: 6 (lower is better)
Translates to: SATARTPSRKSA*PGCRLVMTANA
Trigger: CGCGTTCGCTGTCATCACCAGCCTGCACCCGGGCCACGCGCTCTTCCTCGAGGGCGTGCGCGCCGTCGCCGA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS TCA 72 bp AGCGCGCGCCGCTCGGAGGCCGAGAGGTGCGATCCCTaGTGCCCGACTCGCACTGGCCACCGCGCATCCCAA +
Preference number: 6 (lower is better)
Translates to: SARRSEAERCDP*CPTRTGHRASQ
Trigger: TTGGGATGCGCGGTGGCCAGTGCGAGTCGGGCATCAGGGATCGCACCTCTCGGCCTCCGAGCGGCGCGCGCT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 72 bp GCGCGCACGCCCTCGAGGAAGAGCGCGTGGCCCGGGTaGAGGCTGGTGATGACAGCGAACGCGCTCCAGTCG +
Preference number: 6 (lower is better)
Translates to: ARTPSRKSAWPG*RLVMTANALQS
Trigger: CGACTGGAGCGCGTTCGCTGTCATCACCAGCCTGCACCCGGGCCACGCGCTCTTCCTCGAGGGCGTGCGCGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp GAGGACCCGGGGTGCATGACCGCGGGCCGGAGGTGGTaGGAGCAGGCGCGCGGCGATTGTTGCCCCAGTTCT +
Preference number: 6 (lower is better)
Translates to: EDPGCMTAGRRW*EQARGDCCPSS
Trigger: AGAACTGGGGCAACAATCGCCGCGCGCCTGCTCCCACCACCTCCGGCCCGCGGTCATGCACCCCGGGTCCTC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CAA 72 bp CGCGGGCCGGAGGTGGTGGGAGCAGGCGCGCGGCGATaGTTGCCCCAGTTCTCGATGGTACGAGTGGCGCGG +
Preference number: 6 (lower is better)
Translates to: RGPEVVGAGARR*LPQFSMVRVAR
Trigger: CCGCGCCACTCGTACCATCGAGAACTGGGGCAACAATCGCCGCGCGCCTGCTCCCACCACCTCCGGCCCGCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 72 bp CACTGGCCACCGCGCATCCCAAGCGTGCCTGCAGGATaGTCGGGACACGTCGGGCTGAGGCGACCCTGCGCA +
Preference number: 6 (lower is better)
Translates to: HWPPRIPSVPAG*SGHVGLRRPCA
Trigger: TGCGCAGGGTCGCCTCAGCCCGACGTGTCCCGAGCATCCTGCAGGCACGCTTGGGATGCGCGGTGGCCAGTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 72 bp CGACTCGCACTGGCCACCGCGCATCCCAAGCGTGCCTaGAGGATGCTCGGGACACGTCGGGCTGAGGCGACC +
Preference number: 6 (lower is better)
Translates to: RLALATAHPKRA*RMLGTRRAEAT
Trigger: GGTCGCCTCAGCCCGACGTGTCCCGAGCATCCTGCAGGCACGCTTGGGATGCGCGGTGGCCAGTGCGAGTCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 72 bp GACATGCTGTCTGGGCTGCCAGGTGGCGGCCACCCCTaGTGGCACGCCCTCCACACAGGCCTCCCGGTAGGA +
Preference number: 6 (lower is better)
Translates to: DMLSGLPGGGHP*WHALHTGLPVG
Trigger: TCCTACCGGGAGGCCTGTGTGGAGGGCGTGCCAGCAGGGGTGGCCGCCACCTGGCAGCCCAGACAGCATGTC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp ATGCTGTCTGGGCTGCCAGGTGGCGGCCACCCCTGCTaGCACGCCCTCCACACAGGCCTCCCGGTAGGATGG +
Preference number: 6 (lower is better)
Translates to: MLSGLPGGGHPC*HALHTGLPVGW
Trigger: CCATCCTACCGGGAGGCCTGTGTGGAGGGCGTGCCAGCAGGGGTGGCCGCCACCTGGCAGCCCAGACAGCAT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp GGGTGTGCAGGCAGACATGCTGTCTGGGCTGCCAGGTaGCGGCCACCCCTGCTGGCACGCCCTCCACACAGG +
Preference number: 6 (lower is better)
Translates to: GCAGRHAVWAAR*RPPLLARPPHR
Trigger: CCTGTGTGGAGGGCGTGCCAGCAGGGGTGGCCGCCACCTGGCAGCCCAGACAGCATGTCTGCCTGCACACCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CAA 72 bp GGGCCGGAGGTGGTGGGAGCAGGCGCGCGGCGATTGTaGCCCCAGTTCTCGATGGTACGAGTGGCGCGGTCC +
Preference number: 6 (lower is better)
Translates to: GPEVVGAGARRL*PQFSMVRVARS
Trigger: GGACCGCGCCACTCGTACCATCGAGAACTGGGGCAACAATCGCCGCGCGCCTGCTCCCACCACCTCCGGCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CAA 90 bp CATGACCGCGGGCCGGAGGTGGTGGGAGCAGGCGCGCGGCGATTGTaGCCCCAGTTCTCGATGGTACGAGTGGCGCGGTCCAAAGAGCCG +
Preference number: 6 (lower is better)
Translates to: HDRGPEVVGAGARRL*PQFSMVRVARSKEP
Trigger: CGGCTCTTTGGACCGCGCCACTCGTACCATCGAGAACTGGGGCAACAATCGCCGCGCGCCTGCTCCCACCACCTCCGGCCCGCGGTCATG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 72 bp GGCCGGAGGTGGTGGGAGCAGGCGCGCGGCGATTGTTaGCCCAGTTCTCGATGGTACGAGTGGCGCGGTCCA +
Preference number: 6 (lower is better)
Translates to: GRRWWEQARGDC*PSSRWYEWRGP
Trigger: TGGACCGCGCCACTCGTACCATCGAGAACTGGGGCAACAATCGCCGCGCGCCTGCTCCCACCACCTCCGGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 72 bp TGGGTATGGGTGTGCAGGCAGACATGCTGTCTGGGCTaGCAGGTGGCGGCCACCCCTGCTGGCACGCCCTCC +
Preference number: 6 (lower is better)
Translates to: WVWVCRQTCCLG*QVAATPAGTPS
Trigger: GGAGGGCGTGCCAGCAGGGGTGGCCGCCACCTGGCAGCCCAGACAGCATGTCTGCCTGCACACCCATACCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp GGGTCCTGGGTGGCTTCGGCAGTCTCCAGCCGGGGCTaGAAGGGTACCGTACTGGCGTCGGTAGCTGTGGGC +
Preference number: 6 (lower is better)
Translates to: GSWVASAVSSRG*KGTVLASVAVG
Trigger: GCCCACAGCTACCGACGCCAGTACGGTACCCTTCCAGCCCCGGCTGGAGACTGCCGAAGCCACCCAGGACCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp GGCCGAGAGGTGCGATCCCTGATGCCCGACTCGCACTaGCCACCGCGCATCCCAAGCGTGCCTGCAGGATGC +
Preference number: 6 (lower is better)
Translates to: GREVRSLMPDSH*PPRIPSVPAGC
Trigger: GCATCCTGCAGGCACGCTTGGGATGCGCGGTGGCCAGTGCGAGTCGGGCATCAGGGATCGCACCTCTCGGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp GCAGGTGGGTATGGGTGTGCAGGCAGACATGCTGTCTaGGCTGCCAGGTGGCGGCCACCCCTGCTGGCACGC +
Preference number: 6 (lower is better)
Translates to: AGGYGCAGRHAV*AARWRPPLLAR
Trigger: GCGTGCCAGCAGGGGTGGCCGCCACCTGGCAGCCCAGACAGCATGTCTGCCTGCACACCCATACCCACCTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CAA 90 bp GTGCATGACCGCGGGCCGGAGGTGGTGGGAGCAGGCGCGCGGCGATaGTTGCCCCAGTTCTCGATGGTACGAGTGGCGCGGTCCAAAGAG +
Preference number: 6 (lower is better)
Translates to: VHDRGPEVVGAGARR*LPQFSMVRVARSKE
Trigger: CTCTTTGGACCGCGCCACTCGTACCATCGAGAACTGGGGCAACAATCGCCGCGCGCCTGCTCCCACCACCTCCGGCCCGCGGTCATGCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 72 bp CCTGGCAGGCAGAGGGTTGGATCGAGTGAAGGCTTCTaGCACGGAGCTGGGCAGGGAAGCGTGCCGAGGGCG +
Preference number: 6 (lower is better)
Translates to: PGRQRVGSSEGF*HGAGQGSVPRA
Trigger: CGCCCTCGGCACGCTTCCCTGCCCAGCTCCGTGGCAGAAGCCTTCACTCGATCCAACCCTCTGCCTGCCAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp CCTGTAGAAAGCCTCCCTGGCAGGGCTGACGGGTCCTaGGTGGCTTCGGCAGTCTCCAGCCGGGGCTGGAAG +
Preference number: 6 (lower is better)
Translates to: PVESLPGRADGS*VASAVSSRGWK
Trigger: CTTCCAGCCCCGGCTGGAGACTGCCGAAGCCACCCAGGACCCGTCAGCCCTGCCAGGGAGGCTTTCTACAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CAA 90 bp GCTGTGCTCACCATGTCTCGAGCCGCCTGCAGCATCTTCAGCACATaGGCCTGGGCTGAGCCTGCTGTAAGGTCCGGGCTGGGCGGCCGC +
Preference number: 6 (lower is better)
Translates to: AVLTMSRAACSIFST*AWAEPAVRSGLGGR
Trigger: GCGGCCGCCCAGCCCGGACCTTACAGCAGGCTCAGCCCAGGCCAATGTGCTGAAGATGCTGCAGGCGGCTCGAGACATGGTGAGCACAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CAA 90 bp CCGCAACGACTGTGTTTGAGCCACGTGCCGGCAGGATGGCCGGCTTaGGGGACATGGGCAAGCGCAGGCGTGACCGGTACACCTGGCAGG +
Preference number: 6 (lower is better)
Translates to: PQRLCLSHVPAGWPA*GTWASAGVTGTPGR
Trigger: CCTGCCAGGTGTACCGGTCACGCCTGCGCTTGCCCATGTCCCCAAAGCCGGCCATCCTGCCGGCACGTGGCTCAAACACAGTCGTTGCGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS TCA 72 bp GGATCTCCAGAGGCAAGTCCAGGAAGTTCTGCGGGGTaGGACGAGTCCGGGCCTGGGCCTGCAGTGGCCCAG +
Preference number: 6 (lower is better)
Translates to: GSPEASPGSSAG*DESGPGPAVAQ
Trigger: CTGGGCCACTGCAGGCCCAGGCCCGGACTCGTCTCACCCCGCAGAACTTCCTGGACTTGCCTCTGGAGATCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp TCCAGGAAGTTCTGCGGGGTGAGACGAGTCCGGGCCTaGGCCTGCAGTGGCCCAGAGCTGCCAAACACCACC +
Preference number: 6 (lower is better)
Translates to: SRKFCGVRRVRA*ACSGPELPNTT
Trigger: GGTGGTGTTTGGCAGCTCTGGGCCACTGCAGGCCCAGGCCCGGACTCGTCTCACCCCGCAGAACTTCCTGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp TGCTGGCACGCCCTCCACACAGGCCTCCCGGTAGGATaGCAGCCGCAACGACTGTGTTTGAGCCACGTGCCG +
Preference number: 6 (lower is better)
Translates to: CWHALHTGLPVG*QPQRLCLSHVP
Trigger: CGGCACGTGGCTCAAACACAGTCGTTGCGGCTGCCATCCTACCGGGAGGCCTGTGTGGAGGGCGTGCCAGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS TCA 72 bp TCAGCAGATGCCTGTAGAAAGCCTCCCTGGCAGGGCTaGCGGGTCCTGGGTGGCTTCGGCAGTCTCCAGCCG +
Preference number: 6 (lower is better)
Translates to: SADACRKPPWQG*RVLGGFGSLQP
Trigger: CGGCTGGAGACTGCCGAAGCCACCCAGGACCCGTCAGCCCTGCCAGGGAGGCTTTCTACAGGCATCTGCTGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS TCA 72 bp GATGGCCGGCTTTGGGGACATGGGCAAGCGCAGGCGTaGCCGGTACACCTGGCAGGCAGAGGGTTGGATCGA +
Preference number: 6 (lower is better)
Translates to: DGRLWGHGQAQA*PVHLAGRGLDR
Trigger: TCGATCCAACCCTCTGCCTGCCAGGTGTACCGGTCACGCCTGCGCTTGCCCATGTCCCCAAAGCCGGCCATC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 72 bp CCACGGCCTCAGTGTCCACGTTGTCCTCAAAGACGATaGCGTGGACTCGGGCGGCACCCAGGAGCCCACAGA +
Preference number: 6 (lower is better)
Translates to: PRPQCPRCPQRR*RGLGRHPGAHR
Trigger: TCTGTGGGCTCCTGGGTGCCGCCCGAGTCCACGGCATCGTCTTTGAGGACAACGTGGACACTGAGGCCGTGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 72 bp ACAGTCCCCCAGCAGAACGGCAGGTGGGTATGGGTGTaGAGGCAGACATGCTGTCTGGGCTGCCAGGTGGCG +
Preference number: 6 (lower is better)
Translates to: TVPQQNGRWVWV*RQTCCLGCQVA
Trigger: CGCCACCTGGCAGCCCAGACAGCATGTCTGCCTGCACACCCATACCCACCTGCCGTTCTGCTGGGGGACTGT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp CGCGGCGATTGTTGCCCCAGTTCTCGATGGTACGAGTaGCGCGGTCCAAAGAGCCGCTCACGTCCGCTGTGC +
Preference number: 6 (lower is better)
Translates to: RGDCCPSSRWYE*RGPKSRSRPLC
Trigger: GCACAGCGGACGTGAGCGGCTCTTTGGACCGCGCCACTCGTACCATCGAGAACTGGGGCAACAATCGCCGCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp GAGCAGGCGCGCGGCGATTGTTGCCCCAGTTCTCGATaGTACGAGTGGCGCGGTCCAAAGAGCCGCTCACGT +
Preference number: 6 (lower is better)
Translates to: EQARGDCCPSSR*YEWRGPKSRSR
Trigger: ACGTGAGCGGCTCTTTGGACCGCGCCACTCGTACCATCGAGAACTGGGGCAACAATCGCCGCGCGCCTGCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CAA 72 bp CTGTGTTTGAGCCACGTGCCGGCAGGATGGCCGGCTTaGGGGACATGGGCAAGCGCAGGCGTGACCGGTACA +
Preference number: 6 (lower is better)
Translates to: LCLSHVPAGWPA*GTWASAGVTGT
Trigger: TGTACCGGTCACGCCTGCGCTTGCCCATGTCCCCAAAGCCGGCCATCCTGCCGGCACGTGGCTCAAACACAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS TCA 72 bp GACCGGTACACCTGGCAGGCAGAGGGTTGGATCGAGTaGAGGCTTCTGCCACGGAGCTGGGCAGGGAAGCGT +
Preference number: 6 (lower is better)
Translates to: DRYTWQAEGWIE*RLLPRSWAGKR
Trigger: ACGCTTCCCTGCCCAGCTCCGTGGCAGAAGCCTTCACTCGATCCAACCCTCTGCCTGCCAGGTGTACCGGTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 72 bp GAGTGGCGCGGTCCAAAGAGCCGCTCACGTCCGCTGTaGTCACCATGTCTCGAGCCGCCTGCAGCATCTTCA +
Preference number: 6 (lower is better)
Translates to: EWRGPKSRSRPL*SPCLEPPAASS
Trigger: TGAAGATGCTGCAGGCGGCTCGAGACATGGTGAGCACAGCGGACGTGAGCGGCTCTTTGGACCGCGCCACTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS TCA 72 bp CCCACCGTCCCACCATCTCCCAGAGGCGATGCCGGTTaGGAGCGATCACAACCATTGTGGGCTGGACCAGGT +
Preference number: 6 (lower is better)
Translates to: PTVPPSPRGDAG*ERSQPLWAGPG
Trigger: ACCTGGTCCAGCCCACAATGGTTGTGATCGCTCTCAACCGGCATCGCCTCTGGGAGATGGTGGGACGGTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp CCGTGGACTCGGGCGGCACCCAGGAGCCCACAGATTTaGGTGAGGATGCTGCTGGGGTTGGTATTGTTGACC +
Preference number: 6 (lower is better)
Translates to: PWTRAAPRSPQI*VRMLLGLVLLT
Trigger: GGTCAACAATACCAACCCCAGCAGCATCCTCACCCAAATCTGTGGGCTCCTGGGTGCCGCCCGAGTCCACGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp GCCTCAGTGTCCACGTTGTCCTCAAAGACGATGCCGTaGACTCGGGCGGCACCCAGGAGCCCACAGATTTGG +
Preference number: 6 (lower is better)
Translates to: ASVSTLSSKTMP*TRAAPRSPQIW
Trigger: CCAAATCTGTGGGCTCCTGGGTGCCGCCCGAGTCCACGGCATCGTCTTTGAGGACAACGTGGACACTGAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp CCGAGGGCCAGAATGGCTACACCGTCGCGGACTTTCTaGCGTAGGCTAAGGCGCCAACTCTCGGTGACCACA +
Preference number: 6 (lower is better)
Translates to: PRARMATPSRTF*RRLRRQLSVTT
Trigger: TGTGGTCACCGAGAGTTGGCGCCTTAGCCTACGCCAGAAAGTCCGCGACGGTGTAGCCATTCTGGCCCTCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp AGTTCCAATGAGCCAGGGACTGTGGCTGGAACAGGGTaGAGGGTGACGGCAGACAGTCCCCCAGCAGAACGG +
Preference number: 6 (lower is better)
Translates to: SSNEPGTVAGTG*RVTADSPPAER
Trigger: CCGTTCTGCTGGGGGACTGTCTGCCGTCACCCTCCACCCTGTTCCAGCCACAGTCCCTGGCTCATTGGAACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CAA 72 bp TCCCACCGTCCCACCATCTCCCAGAGGCGATGCCGGTaGAGAGCGATCACAACCATTGTGGGCTGGACCAGG +
Preference number: 6 (lower is better)
Translates to: SHRPTISQRRCR*RAITTIVGWTR
Trigger: CCTGGTCCAGCCCACAATGGTTGTGATCGCTCTCAACCGGCATCGCCTCTGGGAGATGGTGGGACGGTGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CAA 72 bp ACCATGTCTCGAGCCGCCTGCAGCATCTTCAGCACATaGGCCTGGGCTGAGCCTGCTGTAAGGTCCGGGCTG +
Preference number: 6 (lower is better)
Translates to: TMSRAACSIFST*AWAEPAVRSGL
Trigger: CAGCCCGGACCTTACAGCAGGCTCAGCCCAGGCCAATGTGCTGAAGATGCTGCAGGCGGCTCGAGACATGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CAA 90 bp GCGGCACCCAGGAGCCCACAGATTTGGGTGAGGATGCTGCTGGGGTaGGTATTGTTGACCCCGATGGTGAGTGGCTGGATCTCCAGAGGC +
Preference number: 6 (lower is better)
Translates to: AAPRSPQIWVRMLLG*VLLTPMVSGWISRG
Trigger: GCCTCTGGAGATCCAGCCACTCACCATCGGGGTCAACAATACCAACCCCAGCAGCATCCTCACCCAAATCTGTGGGCTCCTGGGTGCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CAA 90 bp AAAGACGATGCCGTGGACTCGGGCGGCACCCAGGAGCCCACAGATTaGGGTGAGGATGCTGCTGGGGTTGGTATTGTTGACCCCGATGGT +
Preference number: 6 (lower is better)
Translates to: KDDAVDSGGTQEPTD*GEDAAGVGIVDPDG
Trigger: ACCATCGGGGTCAACAATACCAACCCCAGCAGCATCCTCACCCAAATCTGTGGGCTCCTGGGTGCCGCCCGAGTCCACGGCATCGTCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 72 bp TATTCCTCCAGCACCTTGAACAGCACCTGCAGCTGCTaGTCCAGGGACACGCCCAGCTGTAGAAAGGCGGAG +
Preference number: 6 (lower is better)
Translates to: YSSSTLNSTCSC*SRDTPSCRKAE
Trigger: CTCCGCCTTTCTACAGCTGGGCGTGTCCCTGGAGCAGCAGCTGCAGGTGCTGTTCAAGGTGCTGGAGGAATA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CAA 90 bp CCCAGGAGCCCACAGATTTGGGTGAGGATGCTGCTGGGGTTGGTATaGTTGACCCCGATGGTGAGTGGCTGGATCTCCAGAGGCAAGTCC +
Preference number: 6 (lower is better)
Translates to: PRSPQIWVRMLLGLV*LTPMVSGWISRGKS
Trigger: GGACTTGCCTCTGGAGATCCAGCCACTCACCATCGGGGTCAACAATACCAACCCCAGCAGCATCCTCACCCAAATCTGTGGGCTCCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CAA 90 bp AGGAGCCCACAGATTTGGGTGAGGATGCTGCTGGGGTTGGTATTGTaGACCCCGATGGTGAGTGGCTGGATCTCCAGAGGCAAGTCCAGG +
Preference number: 6 (lower is better)
Translates to: RSPQIWVRMLLGLVL*TPMVSGWISRGKSR
Trigger: CCTGGACTTGCCTCTGGAGATCCAGCCACTCACCATCGGGGTCAACAATACCAACCCCAGCAGCATCCTCACCCAAATCTGTGGGCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CAA 72 bp AGGAGCCCACAGATTTGGGTGAGGATGCTGCTGGGGTaGGTATTGTTGACCCCGATGGTGAGTGGCTGGATC +
Preference number: 6 (lower is better)
Translates to: RSPQIWVRMLLG*VLLTPMVSGWI
Trigger: GATCCAGCCACTCACCATCGGGGTCAACAATACCAACCCCAGCAGCATCCTCACCCAAATCTGTGGGCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS GCA 72 bp ACACTTCTGATTCCAGGCTGGAGATCCGCCTCCAGGTaGAGGACCTTGGAAACCCTTGTGTCCCACAAGCTT +
Preference number: 6 (lower is better)
Translates to: TLLIPGWRSASR*RTLETLVSHKL
Trigger: AAGCTTGTGGGACACAAGGGTTTCCAAGGTCCTGCACCTGGAGGCGGATCTCCAGCCTGGAATCAGAAGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp CGATGCCGGTTGAGAGCGATCACAACCATTGTGGGCTaGACCAGGTACCCACCAGGGCTAAAAGAGAAGTCT +
Preference number: 6 (lower is better)
Translates to: RCRLRAITTIVG*TRYPPGLKEKS
Trigger: AGACTTCTCTTTTAGCCCTGGTGGGTACCTGGTCCAGCCCACAATGGTTGTGATCGCTCTCAACCGGCATCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp CACAGGCTGCAGAGAAGTGCTGTAGCGAGGCCATACTaGATACTTCATGTACAGGACCCCATGATCCCACCG +
Preference number: 6 (lower is better)
Translates to: HRLQRSAVARPY*ILHVQDPMIPP
Trigger: CGGTGGGATCATGGGGTCCTGTACATGAAGTATCCAGTATGGCCTCGCTACAGCACTTCTCTGCAGCCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CAA 72 bp AGGTACCGTGCCAAAACGGAAGGGTGGGTATTGGTCTaGAGGCCGCTGAAACTTCTTGTCACTAAGGCCCGA +
Preference number: 6 (lower is better)
Translates to: RYRAKTEGWVLV*RPLKLLVTKAR
Trigger: TCGGGCCTTAGTGACAAGAAGTTTCAGCGGCCTCAAGACCAATACCCACCCTTCCGTTTTGGCACGGTACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CCA 72 bp TGTGCTGCCATTAGGTACCGTGCCAAAACGGAAGGGTaGGTATTGGTCTTGAGGCCGCTGAAACTTCTTGTC +
Preference number: 6 (lower is better)
Translates to: CAAIRYRAKTEG*VLVLRPLKLLV
Trigger: GACAAGAAGTTTCAGCGGCCTCAAGACCAATACCCACCCTTCCGTTTTGGCACGGTACCTAATGGCAGCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2
CDS CAA 72 bp GCCATTAGGTACCGTGCCAAAACGGAAGGGTGGGTATaGGTCTTGAGGCCGCTGAAACTTCTTGTCACTAAG +
Preference number: 6 (lower is better)
Translates to: AIRYRAKTEGWV*VLRPLKLLVTK
Trigger: CTTAGTGACAAGAAGTTTCAGCGGCCTCAAGACCAATACCCACCCTTCCGTTTTGGCACGGTACCTAATGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003351.13
ENSMUST00000106554.2