RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GRIN2A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000059003

Ensembl transcript IDs: ENSMUST00000032331.8, ENSMUST00000115835.8, ENSMUST00000199708.5

Found 573 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCTCAGATGAGCCACAAAACCCTGTCTGATTCTTCTGTTCTGACATaGGGTTCTTCCCTAATGGCCGCGGCCTCAGAGCTGTGTCTACAG +
Preference number: 1 (lower is better)
Translates to: AQMSHKTLSDSSVLT*GSSLMAAASELCLQ
Trigger: CTGTAGACACAGCTCTGAGGCCGCGGCCATTAGGGAAGAACCCCATGTCAGAACAGAAGAATCAGACAGGGTTTTGTGGCTCATCTGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 90 bp CTCTGTGTTCTGAAGGAGCACAGGAAGAGAGATGCTTCACCCCTATaGCACTCCACCACTGGCCCTCTAGTCTATTGCCTCACTTTTTGT +
Preference number: 1 (lower is better)
Translates to: LCVLKEHRKRDASPL*HSTTGPLVYCLTFC
Trigger: ACAAAAAGTGAGGCAATAGACTAGAGGGCCAGTGGTGGAGTGGCATAGGGGTGAAGCATCTCTCTTCCTGTGCTCCTTCAGAACACAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 90 bp AAAGTGGAAAGCACAAGAGCTGCCAAGACAACTGCCAAGAGCAGCTaGCCTTACTTAGTCCGGGGAAAGGTCAGGCCTTGGATTCAAAGA +
Preference number: 1 (lower is better)
Translates to: KVESTRAAKTTAKSS*PYLVRGKVRPWIQR
Trigger: TCTTTGAATCCAAGGCCTGACCTTTCCCCGGACTAAGTAAGGGCAGCTGCTCTTGGCAGTTGTCTTGGCAGCTCTTGTGCTTTCCACTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 90 bp AGAGGTTCTACTTTCCAGTCCATTTGCATGCCCTCAGTGCCAAACTaGACATTAGAGGAAAGTGTCACAGTGCCCGTTCCCTACAGGCAG +
Preference number: 1 (lower is better)
Translates to: RGSTFQSICMPSVPN*TLEESVTVPVPYRQ
Trigger: CTGCCTGTAGGGAACGGGCACTGTGACACTTTCCTCTAATGTCCAGTTTGGCACTGAGGGCATGCAAATGGACTGGAAAGTAGAACCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 90 bp AGGGAAAGAAGAACCCAGAGCATGGCAGGAAATTGTCACCAGTGCTaGGGTCATCATCCCTTGAGTCACATGCAGGAAGACAGAGCCATA +
Preference number: 1 (lower is better)
Translates to: RERRTQSMAGNCHQC*GHHPLSHMQEDRAI
Trigger: TATGGCTCTGTCTTCCTGCATGTGACTCAAGGGATGATGACCTCAGCACTGGTGACAATTTCCTGCCATGCTCTGGGTTCTTCTTTCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 90 bp AGTGGGCCAAGAAGAGGACAACGCAGGCAGCTCAGGAATGACAAATaGTTTGAAGACTTCTCATTGGTTTCTGTTGGTGCTGGGCAAGAG +
Preference number: 1 (lower is better)
Translates to: SGPRRGQRRQLRNDK*FEDFSLVSVGAGQE
Trigger: CTCTTGCCCAGCACCAACAGAAACCAATGAGAAGTCTTCAAAGCATTTGTCATTCCTGAGCTGCCTGCGTTGTCCTCTTCTTGGCCCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 90 bp AACGCAGGCAGCTCAGGAATGACAAATGCTTTGAAGACTTCTCATTaGTTTCTGTTGGTGCTGGGCAAGAGGTGCACCTCCAAGAAGGTG +
Preference number: 1 (lower is better)
Translates to: NAGSSGMTNALKTSH*FLLVLGKRCTSKKV
Trigger: CACCTTCTTGGAGGTGCACCTCTTGCCCAGCACCAACAGAAACCAATGAGAAGTCTTCAAAGCATTTGTCATTCCTGAGCTGCCTGCGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 90 bp GACACCATCGTGGCTGTCTGGGGACAGAACATGTTACAATTACTCTaGGAGGGATCGGGTAAGAGATACTATACAACCCTGAGTCATCAC +
Preference number: 1 (lower is better)
Translates to: DTIVAVWGQNMLQLL*EGSGKRYYTTLSHH
Trigger: GTGATGACTCAGGGTTGTATAGTATCTCTTACCCGATCCCTCCCAGAGTAATTGTAACATGTTCTGTCCCCAGACAGCCACGATGGTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 90 bp AGCCTGGGGCACACAGATGGCATTGTACTTCTTCTAGATTACACATaGCTGCTGGCACATGTCACCACATTAACGACTCTGGGAACACAA +
Preference number: 1 (lower is better)
Translates to: SLGHTDGIVLLLDYT*LLAHVTTLTTLGTQ
Trigger: TTGTGTTCCCAGAGTCGTTAATGTGGTGACATGTGCCAGCAGCCATGTGTAATCTAGAAGAAGTACAATGCCATCTGTGTGCCCCAGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 90 bp CCTTACTTAGTCCGGGGAAAGGTCAGGCCTTGGATTCAAAGACACTaGCTTCTTAGCATCTGTGAGTCTAAGAACTCAGAGGTTGGGTCT +
Preference number: 1 (lower is better)
Translates to: PYLVRGKVRPWIQRH*LLSICESKNSEVGS
Trigger: AGACCCAACCTCTGAGTTCTTAGACTCACAGATGCTAAGAAGCCAGTGTCTTTGAATCCAAGGCCTGACCTTTCCCCGGACTAAGTAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 90 bp GTCAGCCTAGTAAAGGGTACCAAGCTAGGAATCAGAACTGAGTCTTaGGCTCCAGCCCCAACTCCAATGCTTTCTGACTTCATCTTAGAC +
Preference number: 1 (lower is better)
Translates to: VSLVKGTKLGIRTES*APAPTPMLSDFILD
Trigger: GTCTAAGATGAAGTCAGAAAGCATTGGAGTTGGGGCTGGAGCCCAAGACTCAGTTCTGATTCCTAGCTTGGTACCCTTTACTAGGCTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 90 bp GTTAGTGCCAAACAGCTCCACCTTGAAACAGCTTCTGTCCTTTGCTaGAGGATTCACACAAGACAGCTCCACACAAAGAAACAGTCCAGG +
Preference number: 1 (lower is better)
Translates to: VSAKQLHLETASVLC*RIHTRQLHTKKQSR
Trigger: CCTGGACTGTTTCTTTGTGTGGAGCTGTCTTGTGTGAATCCTTCAGCAAAGGACAGAAGCTGTTTCAAGGTGGAGCTGTTTGGCACTAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 90 bp TCACCTCCCTGGAGAAGAGCAGACATTCCTAGGGTACATGCGACATaGGTATTTATCAGCCTTGTTGTCCTTGTTGCTGGTGAGGCTTAT +
Preference number: 1 (lower is better)
Translates to: SPPWRRADIPRVHAT*VFISLVVLVAGEAY
Trigger: ATAAGCCTCACCAGCAACAAGGACAACAAGGCTGATAAATACTCATGTCGCATGTACCCTAGGAATGTCTGCTCTTCTCCAGGGAGGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 90 bp CAAATTTCCAAAGATGATTGCTCAGATGAGCCACAAAACCCTGTCTaGTTCTTCTGTTCTGACATGGGGTTCTTCCCTAATGGCCGCGGC +
Preference number: 1 (lower is better)
Translates to: QISKDDCSDEPQNPV*FFCSDMGFFPNGRG
Trigger: GCCGCGGCCATTAGGGAAGAACCCCATGTCAGAACAGAAGAATCAGACAGGGTTTTGTGGCTCATCTGAGCAATCATCTTTGGAAATTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 90 bp CATGGAATTTGGAATATAGGCAACCACAATATAACCATCACCGTCTaGTGCACCATTATTGCCGCCATACCCAGTCACCATGTCTGGGAG +
Preference number: 1 (lower is better)
Translates to: HGIWNIGNHNITITV*CTIIAAIPSHHVWE
Trigger: CTCCCAGACATGGTGACTGGGTATGGCGGCAATAATGGTGCATCAGACGGTGATGGTTATATTGTGGTTGCCTATATTCCAAATTCCATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 90 bp CTTGAGTCACATGCAGGAAGACAGAGCCATAGGGGCTTGCCTTCTTaGAGCATTGAAGCCAGAAGTATATTAAAACCTACAGGTGTTAGG +
Preference number: 1 (lower is better)
Translates to: LESHAGRQSHRGLPS*SIEARSILKPTGVR
Trigger: CCTAACACCTGTAGGTTTTAATATACTTCTGGCTTCAATGCTGCAAGAAGGCAAGCCCCTATGGCTCTGTCTTCCTGCATGTGACTCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 90 bp AACCAGGGACTGCTTACAGAAAGAGGTTCTACTTTCCAGTCCATTTaGATGCCCTCAGTGCCAAACTGGACATTAGAGGAAAGTGTCACA +
Preference number: 1 (lower is better)
Translates to: NQGLLTERGSTFQSI*MPSVPNWTLEESVT
Trigger: TGTGACACTTTCCTCTAATGTCCAGTTTGGCACTGAGGGCATGCAAATGGACTGGAAAGTAGAACCTCTTTCTGTAAGCAGTCCCTGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 90 bp CTATCTGGTATGTGCTGTGCTCAGCACATACCTCATAAGATTCCTTaGGTGGAAGATTATGGCATGGAGCCATGTGCAAAAGAGCCAACA +
Preference number: 1 (lower is better)
Translates to: LSGMCCAQHIPHKIP*VEDYGMEPCAKEPT
Trigger: TGTTGGCTCTTTTGCACATGGCTCCATGCCATAATCTTCCACTCAAGGAATCTTATGAGGTATGTGCTGAGCACAGCACATACCAGATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 90 bp TGCACCATTATTGCCGCCATACCCAGTCACCATGTCTGGGAGACCTaGCCACATGTATTCATTTGTTTTTGGTTAAGGATTCACCTATCT +
Preference number: 1 (lower is better)
Translates to: CTIIAAIPSHHVWET*PHVFICFWLRIHLS
Trigger: AGATAGGTGAATCCTTAACCAAAAACAAATGAATACATGTGGGCAGGTCTCCCAGACATGGTGACTGGGTATGGCGGCAATAATGGTGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 90 bp GAGTCCATTGTGAATAGTTTGGTTCTGGTTCACAGGAGATTTGTGTaGTTTGAAATACAGCTCCAAAGAGGTGAAGCTCCTGGCCCTGTT +
Preference number: 1 (lower is better)
Translates to: ESIVNSLVLVHRRFV*FEIQLQRGEAPGPV
Trigger: AACAGGGCCAGGAGCTTCACCTCTTTGGAGCTGTATTTCAAAGCACACAAATCTCCTGTGAACCAGAACCAAACTATTCACAATGGACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 90 bp CTGGTATGTGCTGTGCTCAGCACATACCTCATAAGATTCCTTGAGTaGAAGATTATGGCATGGAGCCATGTGCAAAAGAGCCAACAAAAA +
Preference number: 1 (lower is better)
Translates to: LVCAVLSTYLIRFLE*KIMAWSHVQKSQQK
Trigger: TTTTTGTTGGCTCTTTTGCACATGGCTCCATGCCATAATCTTCCACTCAAGGAATCTTATGAGGTATGTGCTGAGCACAGCACATACCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 90 bp ATACTTGTGACAAGCAGAAGCTACAACAAGTTCATATGCACAGACTaGCACACACAGTGTGTGAACATCTTCCACACCATCTACATCCCT +
Preference number: 1 (lower is better)
Translates to: ILVTSRSYNKFICTD*HTQCVNIFHTIYIP
Trigger: AGGGATGTAGATGGTGTGGAAGATGTTCACACACTGTGTGTGCCAGTCTGTGCATATGAACTTGTTGTAGCTTCTGCTTGTCACAAGTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 90 bp GGAGGCACAGACAGGCCAATTCTTGACTCAAGTGCAACTGAACAATaGTTTTGGAAGGAAGGTCTCTTTTCTGTCTTTCTTTCTTCTTTC +
Preference number: 1 (lower is better)
Translates to: GGTDRPILDSSATEQ*FWKEGLFSVFLSSF
Trigger: GAAAGAAGAAAGAAAGACAGAAAAGAGACCTTCCTTCCAAAAGCATTGTTCAGTTGCACTTGAGTCAAGAATTGGCCTGTCTGTGCCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 90 bp ACGTATCCACACCCTGAAGTATTAAACATTTTTACAAGTTATAAATaGCCCAACTGGGAAAGCTTTCCATACTCCTCCTCCTCCTCCTCC +
Preference number: 1 (lower is better)
Translates to: TYPHPEVLNIFTSYK*PNWESFPYSSSSSS
Trigger: GGAGGAGGAGGAGGAGGAGTATGGAAAGCTTTCCCAGTTGGGTCATTTATAACTTGTAAAAATGTTTAATACTTCAGGGTGTGGATACGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 90 bp TCTGAACCTCATTCTGTCTGCCTGGCAAAAATAAACCAATGCAGATaGGCAGGAGGACCAGTGAATTTGCAAATAGCATCCTTTTTAGAA +
Preference number: 1 (lower is better)
Translates to: SEPHSVCLAKINQCR*AGGPVNLQIASFLE
Trigger: TTCTAAAAAGGATGCTATTTGCAAATTCACTGGTCCTCCTGCTCATCTGCATTGGTTTATTTTTGCCAGGCAGACAGAATGAGGTTCAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 90 bp TTTGAGAGGACTCCTTCAAACAAGCCCACATGGTTACCTTTCACTTaGAACCTGACCACCTCGTTTTCTTCTTTGAAATCATCAATTATA +
Preference number: 1 (lower is better)
Translates to: FERTPSNKPTWLPFT*NLTTSFSSLKSSII
Trigger: TATAATTGATGATTTCAAAGAAGAAAACGAGGTGGTCAGGTTCCAAGTGAAAGGTAACCATGTGGGCTTGTTTGAAGGAGTCCTCTCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 90 bp AATACCAAGAGAATTATTCTCAGAAATCAAGCTGCGGGCACTGTTTaGAGACTCCTCAGAAGCATTGAGAACAATGACTGGATTTTTCTA +
Preference number: 1 (lower is better)
Translates to: NTKRIILRNQAAGTV*RLLRSIENNDWIFL
Trigger: TAGAAAAATCCAGTCATTGTTCTCAATGCTTCTGAGGAGTCTTCAAACAGTGCCCGCAGCTTGATTTCTGAGAATAATTCTCTTGGTATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 90 bp ACAGACAGGCCAATTCTTGACTCAAGTGCAACTGAACAATGCTTTTaGAAGGAAGGTCTCTTTTCTGTCTTTCTTTCTTCTTTCGTTTTT +
Preference number: 1 (lower is better)
Translates to: TDRPILDSSATEQCF*KEGLFSVFLSSFVF
Trigger: AAAAACGAAAGAAGAAAGAAAGACAGAAAAGAGACCTTCCTTCCAAAAGCATTGTTCAGTTGCACTTGAGTCAAGAATTGGCCTGTCTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 90 bp GACTTACATGCATACCATATTGCTTATTCTGTATTAGAGAAACTGTaGGGCATTTCTGATGGGGAAGTTACATGGTGGATTGATCTTCAT +
Preference number: 1 (lower is better)
Translates to: DLHAYHIAYSVLEKL*GISDGEVTWWIDLH
Trigger: ATGAAGATCAATCCACCATGTAACTTCCCCATCAGAAATGCCTCACAGTTTCTCTAATACAGAATAAGCAATATGGTATGCATGTAAGTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 90 bp TGCTATTGGGTGCCTTCAACTCCTTTGAAAGAGATTTTGGTTTCTTaGATCAGTATCTATTTAGGTCTTAAACCACAAGAAACCTCAGTG +
Preference number: 1 (lower is better)
Translates to: CYWVPSTPLKEILVS*ISIYLGLKPQETSV
Trigger: CACTGAGGTTTCTTGTGGTTTAAGACCTAAATAGATACTGATTCAAGAAACCAAAATCTCTTTCAAAGGAGTTGAAGGCACCCAATAGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 90 bp TGCAGATGCATTCTTAACTGTCTTATTGTCTGGGTCAGACTTACATaGATACCATATTGCTTATTCTGTATTAGAGAAACTGTGAGGCAT +
Preference number: 1 (lower is better)
Translates to: CRCILNCLIVWVRLT*IPYCLFCIRETVRH
Trigger: ATGCCTCACAGTTTCTCTAATACAGAATAAGCAATATGGTATGCATGTAAGTCTGACCCAGACAATAAGACAGTTAAGAATGCATCTGCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 90 bp TATGGACCGATAAATTTGGCTTCCTCCTGTTTAAATTTTATTTCTTaGAGTCCAGGTAAGTCTATTATAGCCAACGTTAGTGCCAAACAG +
Preference number: 1 (lower is better)
Translates to: YGPINLASSCLNFIS*SPGKSIIANVSAKQ
Trigger: CTGTTTGGCACTAACGTTGGCTATAATAGACTTACCTGGACTTCAAGAAATAAAATTTAAACAGGAGGAAGCCAAATTTATCGGTCCATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp GGCCAGGGCCTCCTGTCCAGTCCTCATCACCACCTTAGGTGCCATTaGCCACTCCCTGGATTAGTTTTTGAGAGGACTCCTTCAAACAAG +
Preference number: 2 (lower is better)
Translates to: GQGLLSSPHHHLRCH*PLPGLVFERTPSNK
Trigger: CTTGTTTGAAGGAGTCCTCTCAAAAACTAATCCAGGGAGTGGCAAATGGCACCTAAGGTGGTGATGAGGACTGGACAGGAGGCCCTGGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp CGAGTTCCAGAATCACAGGCATGTGCTAGCACACCTGGTTTATGCTaGCCATGCTGGGGATGCAACCCAGACTACACGTGTGCTGTGCAA +
Preference number: 2 (lower is better)
Translates to: RVPESQACASTPGLC*PCWGCNPDYTCAVQ
Trigger: TTGCACAGCACACGTGTAGTCTGGGTTGCATCCCCAGCATGGCAAGCATAAACCAGGTGTGCTAGCACATGCCTGTGATTCTGGAACTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CCA 90 bp CAGGGCCTCCTGTCCAGTCCTCATCACCACCTTAGGTGCCATTTGCCACTCCCTAAGGATTCACCTATCTaGTATGTGCTGTGCTCAGCA +
Preference number: 2 (lower is better)
Translates to: QGLLSSPHHHLRCHLPLPKDSPI*YVLCSA
Trigger: TGCTGAGCACAGCACATACCAGATAGGTGAATCCTT...AGGGAGTGGCAAATGGCACCTAAGGTGGTGATGAGGACTGGACAGGAGGCCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp ACTAAAGTTACAGACAGTTGTGAGCCACCATGTGGTTGCAGGGAATaGAACTCAGGACCTCTGGAAGAGCAGCCACTGAGCCATCTCTCC +
Preference number: 2 (lower is better)
Translates to: TKVTDSCEPPCGCRE*NSGPLEEQPLSHLS
Trigger: GGAGAGATGGCTCAGTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCTGCAACCACATGGTGGCTCACAACTGTCTGTAACTTTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp CAACGCAGGCAGCTCAGGAATGACAAATGCTTTGAAGACTTCTCATaGGTTTCTGTTGGTGCTGGGCAAGAGGTGCACCTCCAAGAAGGT +
Preference number: 2 (lower is better)
Translates to: QRRQLRNDKCFEDFS*VSVGAGQEVHLQEG
Trigger: ACCTTCTTGGAGGTGCACCTCTTGCCCAGCACCAACAGAAACCAATGAGAAGTCTTCAAAGCATTTGTCATTCCTGAGCTGCCTGCGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp AATCCTTTGAGGCAGGGAAAGAAGAACCCAGAGCATGGCAGGAAATaGTCACCAGTGCTGAGGTCATCATCCCTTGAGTCACATGCAGGA +
Preference number: 2 (lower is better)
Translates to: NPLRQGKKNPEHGRK*SPVLRSSSLESHAG
Trigger: TCCTGCATGTGACTCAAGGGATGATGACCTCAGCACTGGTGACAATTTCCTGCCATGCTCTGGGTTCTTCTTTCCCTGCCTCAAAGGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp TGTGCTTTGAAATACAGCTCCAAAGAGGTGAAGCTCCTGGCCCTGTaGATTGAGGCACTCCACTTTCTGCATAGTTCAGCATCCCTGGGA +
Preference number: 2 (lower is better)
Translates to: CALKYSSKEVKLLAL*IEALHFLHSSASLG
Trigger: TCCCAGGGATGCTGAACTATGCAGAAAGTGGAGTGCCTCAATCAACAGGGCCAGGAGCTTCACCTCTTTGGAGCTGTATTTCAAAGCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR TCA 90 bp ACTTCTCATTGGTTTCTGTTGGTGCTGGGCAAGAGGTGCACCTCCAAGAAGGTGGTACCACAAACACACTaGTTTGCTATTCTTTGGGGG +
Preference number: 2 (lower is better)
Translates to: TSHWFLLVLGKRCTSKKVVPQTH*FAILWG
Trigger: CCCCCAAAGAATAGCAAATCAGTGTGTTTGTGGTAC...CACCTTCTTGGAGGTGCACCTCTTGCCCAGCACCAACAGAAACCAATGAGAAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR TCA 90 bp AGCCTGGGGCACACAGATGGCATTGTACTTCTTCTAGATTACACATGGCTGCTGTTACAGTTCTCCACCTaGGAGTCCCTGTGGCTATTT +
Preference number: 2 (lower is better)
Translates to: SLGHTDGIVLLLDYTWLLLQFST*ESLWLF
Trigger: AAATAGCCACAGGGACTCTCAGGTGGAGAACTGTAA...CAGCAGCCATGTGTAATCTAGAAGAAGTACAATGCCATCTGTGTGCCCCAGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR TCA 90 bp TGCATAGTTCAGCATCCCTGGGAGTCTCCTCGCCTCTTGCAGAAACACATAGTCCTTTCACTTGGAACCTaGCCACCTCGTTTTCTTCTT +
Preference number: 2 (lower is better)
Translates to: CIVQHPWESPRLLQKHIVLSLGT*PPRFLL
Trigger: AAGAAGAAAACGAGGTGGTCAGGTTCCAAGTGAAAG...GACTATGTGTTTCTGCAAGAGGCGAGGAGACTCCCAGGGATGCTGAACTATGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR TCA 90 bp TGCATAGTTCAGCATCCCTGGGAGTCTCCTCGCCTCTTGCAGAAACACATAGTCTGTTTAAGAGAGCTTTaGTTGAGGACCACAAGGCAG +
Preference number: 2 (lower is better)
Translates to: CIVQHPWESPRLLQKHIVCLREL*LRTTRQ
Trigger: CTGCCTTGTGGTCCTCAATCAAAGCTCTCTTAAACA...GACTATGTGTTTCTGCAAGAGGCGAGGAGACTCCCAGGGATGCTGAACTATGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR TCA 90 bp GTAGGCCTCCAACTCACAATATTGCCTGGGCATAACCTTGAACTCATAATCCTCGGCACACACAGTGTGTaGACATCTTCCACACCATCT +
Preference number: 2 (lower is better)
Translates to: VGLQLTILPGHNLELIILGTHSV*TSSTPS
Trigger: AGATGGTGTGGAAGATGTTCACACACTGTGTGTGCC...GAGGATTATGAGTTCAAGGTTATGCCCAGGCAATATTGTGAGTTGGAGGCCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR GCA 90 bp GCAGGAGGACCAGTGAATTTGCAAATAGCATCCTTTTTAGAAAGGGGTCATGGTGCACAGGAAGAGAGATaGTTCACCCCTATGCCACTC +
Preference number: 2 (lower is better)
Translates to: AGGPVNLQIASFLERGHGAQEER*FTPMPL
Trigger: GAGTGGCATAGGGGTGAAGCATCTCTCTTCCTGTGC...ACCATGACCCCTTTCTAAAAAGGATGCTATTTGCAAATTCACTGGTCCTCCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CCA 90 bp ACTTCTCATTGGTTTCTGTTGGTGCTGGGCAAGAGGTGCACCTCCAAGAAGGTGTTGAGTGGAAGATTATaGCATGGAGCCATGTGCAAA +
Preference number: 2 (lower is better)
Translates to: TSHWFLLVLGKRCTSKKVLSGRL*HGAMCK
Trigger: TTTGCACATGGCTCCATGCCATAATCTTCCACTCAA...CACCTTCTTGGAGGTGCACCTCTTGCCCAGCACCAACAGAAACCAATGAGAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp AGCTCAGGAATGACAAATGCTTTGAAGACTTCTCATTGGTTTCTGTaGGTGCTGGGCAAGAGGTGCACCTCCAAGAAGGTGCACATTTCA +
Preference number: 2 (lower is better)
Translates to: SSGMTNALKTSHWFL*VLGKRCTSKKVHIS
Trigger: TGAAATGTGCACCTTCTTGGAGGTGCACCTCTTGCCCAGCACCAACAGAAACCAATGAGAAGTCTTCAAAGCATTTGTCATTCCTGAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp AAACCAGGGACTGCTTACAGAAAGAGGTTCTACTTTCCAGTCCATTaGCATGCCCTCAGTGCCAAACTGGACATTAGAGGAAAGTGTCAC +
Preference number: 2 (lower is better)
Translates to: KPGTAYRKRFYFPVH*HALSAKLDIRGKCH
Trigger: GTGACACTTTCCTCTAATGTCCAGTTTGGCACTGAGGGCATGCAAATGGACTGGAAAGTAGAACCTCTTTCTGTAAGCAGTCCCTGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR GCA 90 bp TGCATAGTTCAGCATCCCTGGGAGTCTCCTCGCCTCTTGCAGAAACACATAGTCTCTGCTCCTATAAAGTaGTATGGAAGCATCTCAGAT +
Preference number: 2 (lower is better)
Translates to: CIVQHPWESPRLLQKHIVSAPIK*YGSISD
Trigger: ATCTGAGATGCTTCCATAGCACTTTATAGGAGCAGA...GACTATGTGTTTCTGCAAGAGGCGAGGAGACTCCCAGGGATGCTGAACTATGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CCA 90 bp TGCATAGTTCAGCATCCCTGGGAGTCTCCTCGCCTCTTGCAGAAACACATAGTCGGGGAAGTTACATGGTaGATTGATCTTCATGGAATT +
Preference number: 2 (lower is better)
Translates to: CIVQHPWESPRLLQKHIVGEVTW*IDLHGI
Trigger: AATTCCATGAAGATCAATCCACCATGTAACTTCCCC...GACTATGTGTTTCTGCAAGAGGCGAGGAGACTCCCAGGGATGCTGAACTATGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CCA 90 bp GTAGGCCTCCAACTCACAATATTGCCTGGGCATAACCTTGAACTCATAATCCTCCCTGGGGCACACAGATaGCATTGTACTTCTTCTAGA +
Preference number: 2 (lower is better)
Translates to: VGLQLTILPGHNLELIILPGAHR*HCTSSR
Trigger: TCTAGAAGAAGTACAATGCCATCTGTGTGCCCCAGG...GAGGATTATGAGTTCAAGGTTATGCCCAGGCAATATTGTGAGTTGGAGGCCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp CAGTCACCATGTCTGGGAGACCTGCCCACATGTATTCATTTGTTTTaGGTTAAGGATTCACCTATCTGGTATGTGCTGTGCTCAGCACAT +
Preference number: 2 (lower is better)
Translates to: QSPCLGDLPTCIHLF*VKDSPIWYVLCSAH
Trigger: ATGTGCTGAGCACAGCACATACCAGATAGGTGAATCCTTAACCAAAAACAAATGAATACATGTGGGCAGGTCTCCCAGACATGGTGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp CATACCCAGTCACCATGTCTGGGAGACCTGCCCACATGTATTCATTaGTTTTTGGTTAAGGATTCACCTATCTGGTATGTGCTGTGCTCA +
Preference number: 2 (lower is better)
Translates to: HTQSPCLGDLPTCIH*FLVKDSPIWYVLCS
Trigger: TGAGCACAGCACATACCAGATAGGTGAATCCTTAACCAAAAACAAATGAATACATGTGGGCAGGTCTCCCAGACATGGTGACTGGGTATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp TCATCATCCCTTGAGTCACATGCAGGAAGACAGAGCCATAGGGGCTaGCCTTCTTGCAGCATTGAAGCCAGAAGTATATTAAAACCTACA +
Preference number: 2 (lower is better)
Translates to: SSSLESHAGRQSHRG*PSCSIEARSILKPT
Trigger: TGTAGGTTTTAATATACTTCTGGCTTCAATGCTGCAAGAAGGCAAGCCCCTATGGCTCTGTCTTCCTGCATGTGACTCAAGGGATGATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp GAGCAGACATTCCTAGGGTACATGCGACATGAGTATTTATCAGCCTaGTTGTCCTTGTTGCTGGTGAGGCTTATAACAGCATTAGCCTCA +
Preference number: 2 (lower is better)
Translates to: EQTFLGYMRHEYLSA*LSLLLVRLITALAS
Trigger: TGAGGCTAATGCTGTTATAAGCCTCACCAGCAACAAGGACAACAAGGCTGATAAATACTCATGTCGCATGTACCCTAGGAATGTCTGCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR TCA 90 bp ACTTCTTCTAGATTACACATGGCTGCTGGCACATGTCACCACATTAACGACTCTACTGTGAGGCATTTCTaGTGGGGAAGTTACATGGTG +
Preference number: 2 (lower is better)
Translates to: TSSRLHMAAGTCHHINDSTVRHF*WGSYMV
Trigger: CACCATGTAACTTCCCCATCAGAAATGCCTCACAGT...AGAGTCGTTAATGTGGTGACATGTGCCAGCAGCCATGTGTAATCTAGAAGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CCA 90 bp TTTGAGCTTTCCAAATCCATCAAATTTCCAAAGATGATTGCTCAGATGAGCCACCCCAGTCACCATGTCTaGGAGACCTGCCCACATGTA +
Preference number: 2 (lower is better)
Translates to: FELSKSIKFPKMIAQMSHPSHHV*ETCPHV
Trigger: TACATGTGGGCAGGTCTCCCAGACATGGTGACTGGG...GTGGCTCATCTGAGCAATCATCTTTGGAAATTTGATGGATTTGGAAAGCTCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CCA 90 bp GAGAATTATTCTCAGAAATCAAGCTGCGGGCACTGTTTGAAGACTCCTCAGAAGACCATCGTGGCTGTCTaGGGACAGAACATGTTACAA +
Preference number: 2 (lower is better)
Translates to: ENYSQKSSCGHCLKTPQKTIVAV*GQNMLQ
Trigger: TTGTAACATGTTCTGTCCCCAGACAGCCACGATGGT...CTTCTGAGGAGTCTTCAAACAGTGCCCGCAGCTTGATTTCTGAGAATAATTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CCA 90 bp GTAGGCCTCCAACTCACAATATTGCCTGGGCATAACCTTGAACTCATAATCCTCACATTTCTCCATCTCTaGGACTTGGGGAAGGAAAAG +
Preference number: 2 (lower is better)
Translates to: VGLQLTILPGHNLELIILTFLHL*DLGKEK
Trigger: CTTTTCCTTCCCCAAGTCCCAGAGATGGAGAAATGT...GAGGATTATGAGTTCAAGGTTATGCCCAGGCAATATTGTGAGTTGGAGGCCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CCA 90 bp GGTACCAAGCTAGGAATCAGAACTGAGTCTTGGGCTCCAGCCCCAACTCCAATGCAGTTTTTGCTGAAATaGATAGATTTTGATGCTTCC +
Preference number: 2 (lower is better)
Translates to: GTKLGIRTESWAPAPTPMQFLLK*IDFDAS
Trigger: GGAAGCATCAAAATCTATCCATTTCAGCAAAAACTG...CATTGGAGTTGGGGCTGGAGCCCAAGACTCAGTTCTGATTCCTAGCTTGGTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CCA 90 bp GGTACCAAGCTAGGAATCAGAACTGAGTCTTGGGCTCCAGCCCCAACTCCAATGATGTACAGGTTTGCTTaGATAATACACTTAAGTGTG +
Preference number: 2 (lower is better)
Translates to: GTKLGIRTESWAPAPTPMMYRFA*IIHLSV
Trigger: CACACTTAAGTGTATTATCCAAGCAAACCTGTACAT...CATTGGAGTTGGGGCTGGAGCCCAAGACTCAGTTCTGATTCCTAGCTTGGTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp CCAATCCTTTGTCCTTTGAAGGATTATTTCAACCCTTTGAAGCATTaGAGGCATGCTTTGGTAAGTCATGCAGGGTTGGTTGGAGCCAGA +
Preference number: 2 (lower is better)
Translates to: PILCPLKDYFNPLKH*RHALVSHAGLVGAR
Trigger: TCTGGCTCCAACCAACCCTGCATGACTTACCAAAGCATGCCTCAAATGCTTCAAAGGGTTGAAATAATCCTTCAAAGGACAAAGGATTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR TCA 90 bp GAGAATTATTCTCAGAAATCAAGCTGCGGGCACTGTTTGAAGACTCCTCAGAAGATAAACCAATGCAGATaGGCAGGAGGACCAGTGAAT +
Preference number: 2 (lower is better)
Translates to: ENYSQKSSCGHCLKTPQKINQCR*AGGPVN
Trigger: ATTCACTGGTCCTCCTGCTCATCTGCATTGGTTTAT...CTTCTGAGGAGTCTTCAAACAGTGCCCGCAGCTTGATTTCTGAGAATAATTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR GCA 90 bp GCAACTGTATTCACAGAAGTGCATTCAATCATCTCTGATCTGTATCAAGCTGACGGAAAGCACAAGAGCTaGCAAGACAACTGCCAAGAG +
Preference number: 2 (lower is better)
Translates to: ATVFTEVHSIISDLYQADGKHKS*QDNCQE
Trigger: CTCTTGGCAGTTGTCTTGGCAGCTCTTGTGCTTTCC...GTCAGCTTGATACAGATCAGAGATGATTGAATGCACTTCTGTGAATACAGTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp AAATGTAATTCCAAAACAACCTCCCTTGTGATCCCAGCTCAATCTTaGCATCTACAAAATGGGCCTAGTGTGTCCCACCTCACTGTAAAC +
Preference number: 2 (lower is better)
Translates to: KCNSKTTSLVIPAQS*HLQNGPSVSHLTVN
Trigger: GTTTACAGTGAGGTGGGACACACTAGGCCCATTTTGTAGATGCAAAGATTGAGCTGGGATCACAAGGGAGGTTGTTTTGGAATTACATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp AACAAGGCTAACATTCATACTCTGAAGACAACCATAAAAACATCTTaGGGGACCCTCAGGCTTGGGAAGCATCCGAGCCACATTTCTTTT +
Preference number: 2 (lower is better)
Translates to: NKANIHTLKTTIKTS*GTLRLGKHPSHISF
Trigger: AAAAGAAATGTGGCTCGGATGCTTCCCAAGCCTGAGGGTCCCCAAAGATGTTTTTATGGTTGTCTTCAGAGTATGAATGTTAGCCTTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CCA 90 bp TTTGAGCTTTCCAAATCCATCAAATTTCCAAAGATGATTGCTCAGATGAGCCACAAAACCATGCTAGCCTaGGGCACACAGATGGCATTG +
Preference number: 2 (lower is better)
Translates to: FELSKSIKFPKMIAQMSHKTMLA*GTQMAL
Trigger: CAATGCCATCTGTGTGCCCCAGGCTAGCATGGTTTT...GTGGCTCATCTGAGCAATCATCTTTGGAAATTTGATGGATTTGGAAAGCTCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR TCA 90 bp TTTGAGCTTTCCAAATCCATCAAATTTCCAAAGATGATTGCTCAGATGAGCCACGCTTCTGTCCTTTGCTaGAGGATTCACACAAGACAG +
Preference number: 2 (lower is better)
Translates to: FELSKSIKFPKMIAQMSHASVLC*RIHTRQ
Trigger: CTGTCTTGTGTGAATCCTTCAGCAAAGGACAGAAGC...GTGGCTCATCTGAGCAATCATCTTTGGAAATTTGATGGATTTGGAAAGCTCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR GCA 90 bp GCAGGAGGACCAGTGAATTTGCAAATAGCATCCTTTTTAGAAAGGGGTCATGGTACCAGAAGGGAGGAATaGAAACTTACGTACATAAGA +
Preference number: 2 (lower is better)
Translates to: AGGPVNLQIASFLERGHGTRREE*KLTYIR
Trigger: TCTTATGTACGTAAGTTTGCATTCCTCCCTTCTGGT...ACCATGACCCCTTTCTAAAAAGGATGCTATTTGCAAATTCACTGGTCCTCCTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp ACATGGTTACCTTTCACTTGGAACCTGACCACCTCGTTTTCTTCTTaGAAATCATCAATTATAAGAGTCAGTGGATTAGTGGAGGGGGAA +
Preference number: 2 (lower is better)
Translates to: TWLPFTWNLTTSFSS*KSSIIRVSGLVEGE
Trigger: TTCCCCCTCCACTAATCCACTGACTCTTATAATTGATGATTTCAAAGAAGAAAACGAGGTGGTCAGGTTCCAAGTGAAAGGTAACCATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp TATGATGGGCACTTGTGTTGCCCCGGGAGTTATGTACATATCAGTTaGCACACACATGTCAAATCCCATTCCTTAAAACAGTTGATATCA +
Preference number: 2 (lower is better)
Translates to: YDGHLCCPGSYVHIS*HTHVKSHSLKQLIS
Trigger: TGATATCAACTGTTTTAAGGAATGGGATTTGACATGTGTGTGCAAACTGATATGTACATAACTCCCGGGGCAACACAAGTGCCCATCATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR TCA 90 bp GCAGGAGGACCAGTGAATTTGCAAATAGCATCCTTTTTAGAAAGGGGTCATGGTTATTTTTGTGTGCATTaGTGCTTTGCCTGCATATGT +
Preference number: 2 (lower is better)
Translates to: AGGPVNLQIASFLERGHGYFCVH*CFACIC
Trigger: ACATATGCAGGCAAAGCATCAATGCACACAAAAATA...ACCATGACCCCTTTCTAAAAAGGATGCTATTTGCAAATTCACTGGTCCTCCTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp CATTCCACAAATCCATTTAATCTAAGACCCTTCCAAGAAGGTACCTaGAACTTTTTCTATGCTGATAGCACTTCTAGGCACAGAATGAGC +
Preference number: 2 (lower is better)
Translates to: HSTNPFNLRPFQEGT*NFFYADSTSRHRMS
Trigger: GCTCATTCTGTGCCTAGAAGTGCTATCAGCATAGAAAAAGTTCAAGGTACCTTCTTGGAAGGGTCTTAGATTAAATGGATTTGTGGAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR TCA 90 bp TTTGAGCTTTCCAAATCCATCAAATTTCCAAAGATGATTGCTCAGATGAGCCACCTACCATGGATCTTTTaGCTAATTAACTGCCTTGCC +
Preference number: 2 (lower is better)
Translates to: FELSKSIKFPKMIAQMSHLPWIF*LINCLA
Trigger: GGCAAGGCAGTTAATTAGTCAAAAGATCCATGGTAG...GTGGCTCATCTGAGCAATCATCTTTGGAAATTTGATGGATTTGGAAAGCTCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR GCA 90 bp TTTGAGCTTTCCAAATCCATCAAATTTCCAAAGATGATTGCTCAGATGAGCCACGCACTCAATCATGTATaGAAAACTACTCCCCATTCC +
Preference number: 2 (lower is better)
Translates to: FELSKSIKFPKMIAQMSHALNHV*KTTPHS
Trigger: GGAATGGGGAGTAGTTTTGCATACATGATTGAGTGC...GTGGCTCATCTGAGCAATCATCTTTGGAAATTTGATGGATTTGGAAAGCTCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CCA 90 bp AACGGCCACTATGTCATAGACAGAAGATCCACACTTAGATATCGAAGACATAAAATAAGATTCCTTGAGTaGAAGATTATGGCATGGAGC +
Preference number: 2 (lower is better)
Translates to: NGHYVIDRRSTLRYRRHKIRFLE*KIMAWS
Trigger: GCTCCATGCCATAATCTTCCACTCAAGGAATCTTAT...TTTATGTCTTCGATATCTAAGTGTGGATCTTCTGTCTATGACATAGTGGCCGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CCA 90 bp GCAACTGTATTCACAGAAGTGCATTCAATCATCTCTGATCTGTATCAAGCTGACAGTAGACATACCAAATaGAATAAACACCGAGAGACT +
Preference number: 2 (lower is better)
Translates to: ATVFTEVHSIISDLYQADSRHTK*NKHRET
Trigger: AGTCTCTCGGTGTTTATTCCATTTGGTATGTCTACT...GTCAGCTTGATACAGATCAGAGATGATTGAATGCACTTCTGTGAATACAGTTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp CCCTTTTTCTCTTACATCACAGTCTATTTTCCAATCCTTTGTCCTTaGAAGGATTATTTCAACCCTTTGAAGCATTTGAGGCATGCTTTG +
Preference number: 2 (lower is better)
Translates to: PFFSYITVYFPILCP*KDYFNPLKHLRHAL
Trigger: CAAAGCATGCCTCAAATGCTTCAAAGGGTTGAAATAATCCTTCAAAGGACAAAGGATTGGAAAATAGACTGTGATGTAAGAGAAAAAGGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp TCAGAAATCAAGCTGCGGGCACTGTTTGAAGACTCCTCAGAAGCATaGAGAACAATGACTGGATTTTTCTATGAAAATGTAATTCCAAAA +
Preference number: 2 (lower is better)
Translates to: SEIKLRALFEDSSEA*RTMTGFFYENVIPK
Trigger: TTTTGGAATTACATTTTCATAGAAAAATCCAGTCATTGTTCTCAATGCTTCTGAGGAGTCTTCAAACAGTGCCCGCAGCTTGATTTCTGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 90 bp ACATGTCAATCTTATTACAGTGCAGATGCATTCTTAACTGTCTTATaGTCTGGGTCAGACTTACATGCATACCATATTGCTTATTCTGTA +
Preference number: 2 (lower is better)
Translates to: TCQSYYSADAFLTVL*SGSDLHAYHIAYSV
Trigger: TACAGAATAAGCAATATGGTATGCATGTAAGTCTGACCCAGACAATAAGACAGTTAAGAATGCATCTGCACTGTAATAAGATTGACATGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 72 bp AAGCCCTCTAGCTCCACCCTAGCCCCCTCTGTGTTCTaGAGGAGCACAGGAAGAGAGATGCTTCACCCCTAT +
Preference number: 3 (lower is better)
Translates to: KPSSSTLAPSVF*RSTGREMLHPY
Trigger: ATAGGGGTGAAGCATCTCTCTTCCTGTGCTCCTTCAGAACACAGAGGGGGCTAGGGTGGAGCTAGAGGGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 72 bp CAGGCATGTGCTAGCACACCTGGTTTATGCTTGCCATaGTGGGGATGCAACCCAGACTACACGTGTGCTGTG +
Preference number: 3 (lower is better)
Translates to: QACASTPGLCLP*WGCNPDYTCAV
Trigger: CACAGCACACGTGTAGTCTGGGTTGCATCCCCAGCATGGCAAGCATAAACCAGGTGTGCTAGCACATGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 72 bp CAGGGCCTCCTGTCCAGTCCTCATCACCACCTTAGGTaGCATTTGCCACTCCCTGGATTAGTTTTTGAGAGG +
Preference number: 3 (lower is better)
Translates to: QGLLSSPHHHLR*HLPLPGLVFER
Trigger: CCTCTCAAAAACTAATCCAGGGAGTGGCAAATGGCACCTAAGGTGGTGATGAGGACTGGACAGGAGGCCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 72 bp GCTAGCACACCTGGTTTATGCTTGCCATGCTGGGGATaGAACCCAGACTACACGTGTGCTGTGCAAACACTC +
Preference number: 3 (lower is better)
Translates to: ASTPGLCLPCWG*NPDYTCAVQTL
Trigger: GAGTGTTTGCACAGCACACGTGTAGTCTGGGTTGCATCCCCAGCATGGCAAGCATAAACCAGGTGTGCTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 72 bp CCAGAATCACAGGCATGTGCTAGCACACCTGGTTTATaGTTGCCATGCTGGGGATGCAACCCAGACTACACG +
Preference number: 3 (lower is better)
Translates to: PESQACASTPGL*LPCWGCNPDYT
Trigger: CGTGTAGTCTGGGTTGCATCCCCAGCATGGCAAGCATAAACCAGGTGTGCTAGCACATGCCTGTGATTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp GGCAGTAGGAGGATCATCTGTACTCCCACTGAAATGTaGGCATTCACCAGCACCCTGGGCTGTGAGGACAAT +
Preference number: 3 (lower is better)
Translates to: GSRRIICTPTEM*AFTSTLGCEDN
Trigger: ATTGTCCTCACAGCCCAGGGTGCTGGTGAATGCCCACATTTCAGTGGGAGTACAGATGATCCTCCTACTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp AGCCACAAAACCCTGTCTGATTCTTCTGTTCTGACATaGGGTTCTTCCCTAATGGCCGCGGCCTCAGAGCTG +
Preference number: 3 (lower is better)
Translates to: SHKTLSDSSVLT*GSSLMAAASEL
Trigger: CAGCTCTGAGGCCGCGGCCATTAGGGAAGAACCCCATGTCAGAACAGAAGAATCAGACAGGGTTTTGTGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 72 bp AAAGAGCAGGAGGCAATGAGAGCCAGGTCAGTTCTGTaGCTGACTCTTACTCCAGAGGAATGCATGGCGGGT +
Preference number: 3 (lower is better)
Translates to: KEQEAMRARSVL*LTLTPEECMAG
Trigger: ACCCGCCATGCATTCCTCTGGAGTAAGAGTCAGTCACAGAACTGACCTGGCTCTCATTGCCTCCTGCTCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 72 bp TGTGGTTTGGAACATGGGTGGGAGGGGATACACAGATaGCACTTGTGTGCTTCGGAGCATCACCTGAGTGAC +
Preference number: 3 (lower is better)
Translates to: CGLEHGWEGIHR*HLCASEHHLSD
Trigger: GTCACTCAGGTGATGCTCCGAAGCACACAAGTGTCATCTGTGTATCCCCTCCCACCCATGTTCCAAACCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 72 bp CACGCTGCTCCTTTCCAAAGTGGAAAGCACAAGAGCTaGCAAGACAACTGCCAAGAGCAGCTGCCCTTACTT +
Preference number: 3 (lower is better)
Translates to: HAAPFQSGKHKS*QDNCQEQLPLL
Trigger: AAGTAAGGGCAGCTGCTCTTGGCAGTTGTCTTGGCAGCTCTTGTGCTTTCCACTTTGGAAAGGAGCAGCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 72 bp CTTGCCATGCTGGGGATGCAACCCAGACTACACGTGTaGTGTGCAAACACTCTACTAGTTGAGCTGTATCCC +
Preference number: 3 (lower is better)
Translates to: LAMLGMQPRLHV*CANTLLVELYP
Trigger: GGGATACAGCTCAACTAGTAGAGTGTTTGCACAGCACACGTGTAGTCTGGGTTGCATCCCCAGCATGGCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 72 bp AATCACAGGCATGTGCTAGCACACCTGGTTTATGCTTaGCATGCTGGGGATGCAACCCAGACTACACGTGTG +
Preference number: 3 (lower is better)
Translates to: NHRHVLAHLVYA*HAGDATQTTRV
Trigger: CACACGTGTAGTCTGGGTTGCATCCCCAGCATGGCAAGCATAAACCAGGTGTGCTAGCACATGCCTGTGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp CAAATGAGGACCACTGATGGAGCACACAGCTATCCTTaGATCCATCGTACACGGCGTCAAGGCAGTCCTAAC +
Preference number: 3 (lower is better)
Translates to: QMRTTDGAHSYP*IHRTRRQGSPN
Trigger: GTTAGGACTGCCTTGACGCCGTGTACGATGGATCCAAGGATAGCTGTGTGCTCCATCAGTGGTCCTCATTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 72 bp CAGAAGCATGGCTATTTGCCTCCACGTATTCCCATCTaGGGACCACGCTGCTCCTTTCCAAAGTGGAAAGCA +
Preference number: 3 (lower is better)
Translates to: QKHGYLPPRIPI*GPRCSFPKWKA
Trigger: TGCTTTCCACTTTGGAAAGGAGCAGCGTGGTCCTCAGATGGGAATACGTGGAGGCAAATAGCCATGCTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 72 bp AGAACCCAGAGCATGGCAGGAAATTGTCACCAGTGCTaGGGTCATCATCCCTTGAGTCACATGCAGGAAGAC +
Preference number: 3 (lower is better)
Translates to: RTQSMAGNCHQC*GHHPLSHMQED
Trigger: GTCTTCCTGCATGTGACTCAAGGGATGATGACCTCAGCACTGGTGACAATTTCCTGCCATGCTCTGGGTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 72 bp CAGCCTAGTAAAGGGTACCAAGCTAGGAATCAGAACTaGGTCTTGGGCTCCAGCCCCAACTCCAATGCTTTC +
Preference number: 3 (lower is better)
Translates to: QPSKGYQARNQN*VLGSSPNSNAF
Trigger: GAAAGCATTGGAGTTGGGGCTGGAGCCCAAGACTCAGTTCTGATTCCTAGCTTGGTACCCTTTACTAGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp ACTTTCCAGTCCATTTGCATGCCCTCAGTGCCAAACTaGACATTAGAGGAAAGTGTCACAGTGCCCGTTCCC +
Preference number: 3 (lower is better)
Translates to: TFQSICMPSVPN*TLEESVTVPVP
Trigger: GGGAACGGGCACTGTGACACTTTCCTCTAATGTCCAGTTTGGCACTGAGGGCATGCAAATGGACTGGAAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CAA 90 bp CAGGGCCTCCTGTCCAGTCCTCATCACCACCTTAGGTGCCATTTGCCACTCCCTTTCTTAACTGTCTTATaGTCTGGGTCAGACTTACAT +
Preference number: 3 (lower is better)
Translates to: QGLLSSPHHHLRCHLPLPFLTVL*SGSDLH
Trigger: ATGTAAGTCTGACCCAGACAATAAGACAGTTAAGAA...AGGGAGTGGCAAATGGCACCTAAGGTGGTGATGAGGACTGGACAGGAGGCCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CAA 90 bp TGCATAGTTCAGCATCCCTGGGAGTCTCCTCGCCTCTTGCAGAAACACATAGTCCCAAACAGCTCCACCTaGAAACAGCTTCTGTCCTTT +
Preference number: 3 (lower is better)
Translates to: CIVQHPWESPRLLQKHIVPNSST*KQLLSF
Trigger: AAAGGACAGAAGCTGTTTCAAGGTGGAGCTGTTTGG...GACTATGTGTTTCTGCAAGAGGCGAGGAGACTCCCAGGGATGCTGAACTATGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 72 bp CAGATGACACTTGTGTGCTTCGGAGCATCACCTGAGTaGCATGTTAGACACCATGCCACTCTCTGCTCCTAT +
Preference number: 3 (lower is better)
Translates to: QMTLVCFGASPE*HVRHHATLCSY
Trigger: ATAGGAGCAGAGAGTGGCATGGTGTCTAACATGTCACTCAGGTGATGCTCCGAAGCACACAAGTGTCATCTG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 72 bp CCCTTTGAAGCATTTGAGGCATGCTTTGGTAAGTCATaGAGGGTTGGTTGGAGCCAGACCCAAGACTACTCA +
Preference number: 3 (lower is better)
Translates to: PFEAFEACFGKS*RVGWSQTQDYS
Trigger: TGAGTAGTCTTGGGTCTGGCTCCAACCAACCCTGCATGACTTACCAAAGCATGCCTCAAATGCTTCAAAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp GTCCGGGGAAAGGTCAGGCCTTGGATTCAAAGACACTaGCTTCTTAGCATCTGTGAGTCTAAGAACTCAGAG +
Preference number: 3 (lower is better)
Translates to: VRGKVRPWIQRH*LLSICESKNSE
Trigger: CTCTGAGTTCTTAGACTCACAGATGCTAAGAAGCCAGTGTCTTTGAATCCAAGGCCTGACCTTTCCCCGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp GTAAAGGGTACCAAGCTAGGAATCAGAACTGAGTCTTaGGCTCCAGCCCCAACTCCAATGCTTTCTGACTTC +
Preference number: 3 (lower is better)
Translates to: VKGTKLGIRTES*APAPTPMLSDF
Trigger: GAAGTCAGAAAGCATTGGAGTTGGGGCTGGAGCCCAAGACTCAGTTCTGATTCCTAGCTTGGTACCCTTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 72 bp ACTTCTCATTGGTTTCTGTTGGTGCTGGGCAAGAGGTaGACCTCCAAGAAGGTGCACATTTCAGAGGAAAGA +
Preference number: 3 (lower is better)
Translates to: TSHWFLLVLGKR*TSKKVHISEER
Trigger: TCTTTCCTCTGAAATGTGCACCTTCTTGGAGGTGCACCTCTTGCCCAGCACCAACAGAAACCAATGAGAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 72 bp ACTAAAGTTACAGACAGTTGTGAGCCACCATGTGGTTaGAGGGAATTGAACTCAGGACCTCTGGAAGAGCAG +
Preference number: 3 (lower is better)
Translates to: TKVTDSCEPPCG*RELNSGPLEEQ
Trigger: CTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCTGCAACCACATGGTGGCTCACAACTGTCTGTAACTTTAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 72 bp CACTCAATCATGTATGCAAAACTACTCCCCATTCCCTaGCCTATCTCTGAACCTCATTCTGTCTGCCTGGCA +
Preference number: 3 (lower is better)
Translates to: HSIMYAKLLPIP*PISEPHSVCLA
Trigger: TGCCAGGCAGACAGAATGAGGTTCAGAGATAGGGCAGGGAATGGGGAGTAGTTTTGCATACATGATTGAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp TGCACCATTATTGCCGCCATACCCAGTCACCATGTCTaGGAGACCTGCCCACATGTATTCATTTGTTTTTGG +
Preference number: 3 (lower is better)
Translates to: CTIIAAIPSHHV*ETCPHVFICFW
Trigger: CCAAAAACAAATGAATACATGTGGGCAGGTCTCCCAGACATGGTGACTGGGTATGGCGGCAATAATGGTGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp GTGGCTGTCTGGGGACAGAACATGTTACAATTACTCTaGGAGGGATCGGGTAAGAGATACTATACAACCCTG +
Preference number: 3 (lower is better)
Translates to: VAVWGQNMLQLL*EGSGKRYYTTL
Trigger: CAGGGTTGTATAGTATCTCTTACCCGATCCCTCCCAGAGTAATTGTAACATGTTCTGTCCCCAGACAGCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CAA 90 bp ACTTCTTCTAGATTACACATGGCTGCTGGCACATGTCACCACATTAACGACTCTAGTCCCTGTGGCTATTaGTTCCAGGTGTGTCTTGGG +
Preference number: 3 (lower is better)
Translates to: TSSRLHMAAGTCHHINDSSPCGY*FQVCLG
Trigger: CCCAAGACACACCTGGAACAAATAGCCACAGGGACT...AGAGTCGTTAATGTGGTGACATGTGCCAGCAGCCATGTGTAATCTAGAAGAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CAA 90 bp GCAGGAGGACCAGTGAATTTGCAAATAGCATCCTTTTTAGAAAGGGGTCATGGTGGGAAAGGTCAGGCCTaGGATTCAAAGACACTGGCT +
Preference number: 3 (lower is better)
Translates to: AGGPVNLQIASFLERGHGGKGQA*DSKTLA
Trigger: AGCCAGTGTCTTTGAATCCAAGGCCTGACCTTTCCC...ACCATGACCCCTTTCTAAAAAGGATGCTATTTGCAAATTCACTGGTCCTCCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CAA 90 bp GGTACCAAGCTAGGAATCAGAACTGAGTCTTGGGCTCCAGCCCCAACTCCAATGTTATTTTTGTGTGCATaGATGCTTTGCCTGCATATG +
Preference number: 3 (lower is better)
Translates to: GTKLGIRTESWAPAPTPMLFLCA*MLCLHM
Trigger: CATATGCAGGCAAAGCATCAATGCACACAAAAATAA...CATTGGAGTTGGGGCTGGAGCCCAAGACTCAGTTCTGATTCCTAGCTTGGTACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CAA 90 bp GCAGGAGGACCAGTGAATTTGCAAATAGCATCCTTTTTAGAAAGGGGTCATGGTATGAGGTTTCCCCCTTaGTTTAGCTGCTCCTGTGCT +
Preference number: 3 (lower is better)
Translates to: AGGPVNLQIASFLERGHGMRFPP*FSCSCA
Trigger: AGCACAGGAGCAGCTAAACAAAGGGGGAAACCTCAT...ACCATGACCCCTTTCTAAAAAGGATGCTATTTGCAAATTCACTGGTCCTCCTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CAA 90 bp TTTGAGCTTTCCAAATCCATCAAATTTCCAAAGATGATTGCTCAGATGAGCCACGGTCCCCAGGAGCTCTaGATATACCCCAAACCAGGC +
Preference number: 3 (lower is better)
Translates to: FELSKSIKFPKMIAQMSHGPQEL*IYPKPG
Trigger: GCCTGGTTTGGGGTATATCAAGAGCTCCTGGGGACC...GTGGCTCATCTGAGCAATCATCTTTGGAAATTTGATGGATTTGGAAAGCTCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CAA 90 bp TGCATAGTTCAGCATCCCTGGGAGTCTCCTCGCCTCTTGCAGAAACACATAGTCGGAGGACCAGTGAATTaGCAAATAGCATCCTTTTTA +
Preference number: 3 (lower is better)
Translates to: CIVQHPWESPRLLQKHIVGGPVN*QIASFL
Trigger: TAAAAAGGATGCTATTTGCAAATTCACTGGTCCTCC...GACTATGTGTTTCTGCAAGAGGCGAGGAGACTCCCAGGGATGCTGAACTATGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 72 bp GACACACACCGGTTTCCCTTCTCTTCTGTACATTCCTaGCCTCTGTTTTCACTAGCGAACCTGACACTTCTT +
Preference number: 3 (lower is better)
Translates to: DTHRFPFSSVHS*PLFSLANLTLL
Trigger: AAGAAGTGTCAGGTTCGCTAGTGAAAACAGAGGTCAGGAATGTACAGAAGAGAAGGGAAACCGGTGTGTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp GCTGTGCTCAGCACATACCTCATAAGATTCCTTGAGTaGAAGATTATGGCATGGAGCCATGTGCAAAAGAGC +
Preference number: 3 (lower is better)
Translates to: AVLSTYLIRFLE*KIMAWSHVQKS
Trigger: GCTCTTTTGCACATGGCTCCATGCCATAATCTTCCACTCAAGGAATCTTATGAGGTATGTGCTGAGCACAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CAA 90 bp ACTTCTTCTAGATTACACATGGCTGCTGGCACATGTCACCACATTAACGACTCTTGTTCCAGGTGTGTCTaGGGGGAAGACTACAATGAA +
Preference number: 3 (lower is better)
Translates to: TSSRLHMAAGTCHHINDSCSRCV*GEDYNE
Trigger: TTCATTGTAGTCTTCCCCCAAGACACACCTGGAACA...AGAGTCGTTAATGTGGTGACATGTGCCAGCAGCCATGTGTAATCTAGAAGAAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CAA 90 bp TTTGAGCTTTCCAAATCCATCAAATTTCCAAAGATGATTGCTCAGATGAGCCACGTCATGCAGGGTTGGTaGGAGCCAGACCCAAGACTA +
Preference number: 3 (lower is better)
Translates to: FELSKSIKFPKMIAQMSHVMQGW*EPDPRL
Trigger: TAGTCTTGGGTCTGGCTCCAACCAACCCTGCATGAC...GTGGCTCATCTGAGCAATCATCTTTGGAAATTTGATGGATTTGGAAAGCTCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 72 bp TGGAATATAGGCAACCACAATATAACCATCACCGTCTaGTGCACCATTATTGCCGCCATACCCAGTCACCAT +
Preference number: 3 (lower is better)
Translates to: WNIGNHNITITV*CTIIAAIPSHH
Trigger: ATGGTGACTGGGTATGGCGGCAATAATGGTGCATCAGACGGTGATGGTTATATTGTGGTTGCCTATATTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 72 bp TTAAGGGGACAAAGAGCATCAGTGCTCAAATCCCCCTaGGCCCTATCATCCTTCCTAGAGCTGATAGTTAAA +
Preference number: 3 (lower is better)
Translates to: LRGQRASVLKSP*ALSSFLELIVK
Trigger: TTTAACTATCAGCTCTAGGAAGGATGATAGGGCTCAGGGGGATTTGAGCACTGATGCTCTTTGTCCCCTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 72 bp ATTGCCGCCATACCCAGTCACCATGTCTGGGAGACCTaGCCACATGTATTCATTTGTTTTTGGTTAAGGATT +
Preference number: 3 (lower is better)
Translates to: IAAIPSHHVWET*PHVFICFWLRI
Trigger: AATCCTTAACCAAAAACAAATGAATACATGTGGGCAGGTCTCCCAGACATGGTGACTGGGTATGGCGGCAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 72 bp TCATGGGAGAGAGTTACCCAACTGACTAAAGTCTCATaGAAAATACCATGGCCAGCTAGCCAGGCTATTTCA +
Preference number: 3 (lower is better)
Translates to: SWERVTQLTKVS*KIPWPASQAIS
Trigger: TGAAATAGCCTGGCTAGCTGGCCATGGTATTTTGCATGAGACTTTAGTCAGTTGGGTAACTCTCTCCCATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 72 bp CTGCTTACAGAAAGAGGTTCTACTTTCCAGTCCATTTaGATGCCCTCAGTGCCAAACTGGACATTAGAGGAA +
Preference number: 3 (lower is better)
Translates to: LLTERGSTFQSI*MPSVPNWTLEE
Trigger: TTCCTCTAATGTCCAGTTTGGCACTGAGGGCATGCAAATGGACTGGAAAGTAGAACCTCTTTCTGTAAGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp CACACAGATGGCATTGTACTTCTTCTAGATTACACATaGCTGCTGGCACATGTCACCACATTAACGACTCTG +
Preference number: 3 (lower is better)
Translates to: HTDGIVLLLDYT*LLAHVTTLTTL
Trigger: CAGAGTCGTTAATGTGGTGACATGTGCCAGCAGCCATGTGTAATCTAGAAGAAGTACAATGCCATCTGTGTG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp ACAAGCAGAAGCTACAACAAGTTCATATGCACAGACTaGCACACACAGTGTGTGAACATCTTCCACACCATC +
Preference number: 3 (lower is better)
Translates to: TSRSYNKFICTD*HTQCVNIFHTI
Trigger: GATGGTGTGGAAGATGTTCACACACTGTGTGTGCCAGTCTGTGCATATGAACTTGTTGTAGCTTCTGCTTGT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp AGACACCATGCCACTCTCTGCTCCTATAAAGTGCTATaGAAGCATCTCAGATCAACACTCTTCCTAGGGATA +
Preference number: 3 (lower is better)
Translates to: RHHATLCSYKVL*KHLRSTLFLGI
Trigger: TATCCCTAGGAAGAGTGTTGATCTGAGATGCTTCCATAGCACTTTATAGGAGCAGAGAGTGGCATGGTGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CAA 90 bp GAGAATTATTCTCAGAAATCAAGCTGCGGGCACTGTTTGAAGACTCCTCAGAAGGTGTTTAAGAGAGCTTaGATTGAGGACCACAAGGCA +
Preference number: 3 (lower is better)
Translates to: ENYSQKSSCGHCLKTPQKVFKRA*IEDHKA
Trigger: TGCCTTGTGGTCCTCAATCAAAGCTCTCTTAAACAC...CTTCTGAGGAGTCTTCAAACAGTGCCCGCAGCTTGATTTCTGAGAATAATTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CAA 90 bp GTAGGCCTCCAACTCACAATATTGCCTGGGCATAACCTTGAACTCATAATCCTCGACTCCTCAGAAGCATaGAGAACAATGACTGGATTT +
Preference number: 3 (lower is better)
Translates to: VGLQLTILPGHNLELIILDSSEA*RTMTGF
Trigger: AAATCCAGTCATTGTTCTCAATGCTTCTGAGGAGTC...GAGGATTATGAGTTCAAGGTTATGCCCAGGCAATATTGTGAGTTGGAGGCCTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 72 bp ATGTGCTGTGCTCAGCACATACCTCATAAGATTCCTTaGGTGGAAGATTATGGCATGGAGCCATGTGCAAAA +
Preference number: 3 (lower is better)
Translates to: MCCAQHIPHKIP*VEDYGMEPCAK
Trigger: TTTTGCACATGGCTCCATGCCATAATCTTCCACTCAAGGAATCTTATGAGGTATGTGCTGAGCACAGCACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 72 bp CATTCTGTCTGCCTGGCAAAAATAAACCAATGCAGATaGGCAGGAGGACCAGTGAATTTGCAAATAGCATCC +
Preference number: 3 (lower is better)
Translates to: HSVCLAKINQCR*AGGPVNLQIAS
Trigger: GGATGCTATTTGCAAATTCACTGGTCCTCCTGCTCATCTGCATTGGTTTATTTTTGCCAGGCAGACAGAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 72 bp CAGACTACACGTGTGCTGTGCAAACACTCTACTAGTTaGGCTGTATCCCTAGCTCTAGTAACCTCTATGTTA +
Preference number: 3 (lower is better)
Translates to: QTTRVLCKHSTS*AVSLALVTSML
Trigger: TAACATAGAGGTTACTAGAGCTAGGGATACAGCTCAACTAGTAGAGTGTTTGCACAGCACACGTGTAGTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 72 bp TTCCTCATGCAGCGGATCAGACATGACAGTATAAACTaGTGTGACATGGAGGTGAATATCTACTCCCAAATG +
Preference number: 3 (lower is better)
Translates to: FLMQRIRHDSIN*CDMEVNIYSQM
Trigger: CATTTGGGAGTAGATATTCACCTCCATGTCACAGCAGTTTATACTGTCATGTCTGATCCGCTGCATGAGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp TTAGTTTTTGAGAGGACTCCTTCAAACAAGCCCACATaGTTACCTTTCACTTGGAACCTGACCACCTCGTTT +
Preference number: 3 (lower is better)
Translates to: LVFERTPSNKPT*LPFTWNLTTSF
Trigger: AAACGAGGTGGTCAGGTTCCAAGTGAAAGGTAACCATGTGGGCTTGTTTGAAGGAGTCCTCTCAAAAACTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CAA 90 bp GTAGGCCTCCAACTCACAATATTGCCTGGGCATAACCTTGAACTCATAATCCTCAAGAATTCAGGGCATTaGTCATTTCCTGAGAAGGAT +
Preference number: 3 (lower is better)
Translates to: VGLQLTILPGHNLELIILKNSGH*SFPEKD
Trigger: ATCCTTCTCAGGAAATGACAAATGCCCTGAATTCTT...GAGGATTATGAGTTCAAGGTTATGCCCAGGCAATATTGTGAGTTGGAGGCCTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 72 bp AGAATTATTCTCAGAAATCAAGCTGCGGGCACTGTTTaGAGACTCCTCAGAAGCATTGAGAACAATGACTGG +
Preference number: 3 (lower is better)
Translates to: RIILRNQAAGTV*RLLRSIENNDW
Trigger: CCAGTCATTGTTCTCAATGCTTCTGAGGAGTCTTCAAACAGTGCCCGCAGCTTGATTTCTGAGAATAATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 72 bp AAAGATGATTGCTCAGATGAGCCACAAAACCCTGTCTaGTTCTTCTGTTCTGACATGGGGTTCTTCCCTAAT +
Preference number: 3 (lower is better)
Translates to: KDDCSDEPQNPV*FFCSDMGFFPN
Trigger: ATTAGGGAAGAACCCCATGTCAGAACAGAAGAATCAGACAGGGTTTTGTGGCTCATCTGAGCAATCATCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp ACTCCTTCAAACAAGCCCACATGGTTACCTTTCACTTaGAACCTGACCACCTCGTTTTCTTCTTTGAAATCA +
Preference number: 3 (lower is better)
Translates to: TPSNKPTWLPFT*NLTTSFSSLKS
Trigger: TGATTTCAAAGAAGAAAACGAGGTGGTCAGGTTCCAAGTGAAAGGTAACCATGTGGGCTTGTTTGAAGGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CAA 90 bp TTTGAGCTTTCCAAATCCATCAAATTTCCAAAGATGATTGCTCAGATGAGCCACCATTTGAGGCATGCTTaGGTAAGTCATGCAGGGTTG +
Preference number: 3 (lower is better)
Translates to: FELSKSIKFPKMIAQMSHHLRHA*VSHAGL
Trigger: CAACCCTGCATGACTTACCAAAGCATGCCTCAAATG...GTGGCTCATCTGAGCAATCATCTTTGGAAATTTGATGGATTTGGAAAGCTCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp GGGGAAGTTACATGGTGGATTGATCTTCATGGAATTTaGAATATAGGCAACCACAATATAACCATCACCGTC +
Preference number: 3 (lower is better)
Translates to: GEVTWWIDLHGI*NIGNHNITITV
Trigger: GACGGTGATGGTTATATTGTGGTTGCCTATATTCCAAATTCCATGAAGATCAATCCACCATGTAACTTCCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp CTTGTCACCCTCCCTTATTCCCCTTTCCTAAAGTCTTaGTATCATTCCACAAATCCATTTAATCTAAGACCC +
Preference number: 3 (lower is better)
Translates to: LVTLPYSPFLKS*YHSTNPFNLRP
Trigger: GGGTCTTAGATTAAATGGATTTGTGGAATGATACCAAGACTTTAGGAAAGGGGAATAAGGGAGGGTGACAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CAA 90 bp GAGAATTATTCTCAGAAATCAAGCTGCGGGCACTGTTTGAAGACTCCTCAGAAGGGAATGACAAATGCTTaGAAGACTTCTCATTGGTTT +
Preference number: 3 (lower is better)
Translates to: ENYSQKSSCGHCLKTPQKGMTNA*KTSHWF
Trigger: AAACCAATGAGAAGTCTTCAAAGCATTTGTCATTCC...CTTCTGAGGAGTCTTCAAACAGTGCCCGCAGCTTGATTTCTGAGAATAATTCTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 72 bp CATCTCTCCAGCCCTAGGGCTCTTTCCTTTAGAGCTTaGATTACTATTAAATATGGACCGATAAATTTGGCT +
Preference number: 3 (lower is better)
Translates to: HLSSPRALSFRA*ITIKYGPINLA
Trigger: AGCCAAATTTATCGGTCCATATTTAATAGTAATTCAAGCTCTAAAGGAAAGAGCCCTAGGGCTGGAGAGATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR TCA 72 bp CACCCTGAAGTATTAAACATTTTTACAAGTTATAAATaGCCCAACTGGGAAAGCTTTCCATACTCCTCCTCC +
Preference number: 3 (lower is better)
Translates to: HPEVLNIFTSYK*PNWESFPYSSS
Trigger: GGAGGAGGAGTATGGAAAGCTTTCCCAGTTGGGTCATTTATAACTTGTAAAAATGTTTAATACTTCAGGGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR GCA 72 bp TTTAAAGATTTATTATTTTTGTGTGCATTGATGCTTTaGCTGCATATGTGTCTGTGTGAGGTGCCAGATCCC +
Preference number: 3 (lower is better)
Translates to: FKDLLFLCALML*LHMCLCEVPDP
Trigger: GGGATCTGGCACCTCACACAGACACATATGCAGGCAAAGCATCAATGCACACAAAAATAATAAATCTTTAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR-3UTR CAA 90 bp TTTGAGCTTTCCAAATCCATCAAATTTCCAAAGATGATTGCTCAGATGAGCCACTATGTTATGAGGCTTTaGACCATCAGCTTGACAATA +
Preference number: 3 (lower is better)
Translates to: FELSKSIKFPKMIAQMSHYVMRL*TISLTI
Trigger: TATTGTCAAGCTGATGGTCAAAAGCCTCATAACATA...GTGGCTCATCTGAGCAATCATCTTTGGAAATTTGATGGATTTGGAAAGCTCAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp TTACAGTGCAGATGCATTCTTAACTGTCTTATTGTCTaGGTCAGACTTACATGCATACCATATTGCTTATTC +
Preference number: 3 (lower is better)
Translates to: LQCRCILNCLIV*VRLTCIPYCLF
Trigger: GAATAAGCAATATGGTATGCATGTAAGTCTGACCCAGACAATAAGACAGTTAAGAATGCATCTGCACTGTAA
38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp ATCAACACTCTTCCTAGGGATAAAGTTAACAAATGTTaGTGCATCAACAATTATCCTGATGCTAATGACCAG +
Preference number: 3 (lower is better)
Translates to: INTLPRDKVNKC*CINNYPDANDQ
Trigger: CTGGTCATTAGCATCAGGATAATTGTTGATGCACCAACATTTGTTAACTTTATCCCTAGGAAGAGTGTTGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CCA 72 bp CAATCCCATTCACACTGGGTTAAAGATGGACTCATATaGAAACCCTTTATGAATAAGCTATCTAATTCAATA +
Preference number: 3 (lower is better)
Translates to: QSHSHWVKDGLI*KPFMNKLSNSI
Trigger: TATTGAATTAGATAGCTTATTCATAAAGGGTTTCCATATGAGTCCATCTTTAACCCAGTGTGAATGGGATTG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CAGGGCCTCCTGTCCAGTCCTCATCACCACCTTAGGTGCCATTTGCCACTCCCTTGTAGATGCCCCTGCTaGTGGAGAAGAGCAGCCCGG +
Preference number: 4 (lower is better)
Translates to: QGLLSSPHHHLRCHLPLPCRCPC*WRRAAR
Trigger: CCGGGCTGCTCTTCTCCATCAGCAGGGGCATCTACA...AGGGAGTGGCAAATGGCACCTAAGGTGGTGATGAGGACTGGACAGGAGGCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp GGTACCAAGCTAGGAATCAGAACTGAGTCTTGGGCTCCAGCCCCAACTCCAATGTTCTGCGCCGGACCGTaGCAGACCAGAAGGGCCGGC +
Preference number: 4 (lower is better)
Translates to: GTKLGIRTESWAPAPTPMFCAGP*QTRRAG
Trigger: GCCGGCCCTTCTGGTCTGGCACGGTCCGGCGCAGAA...CATTGGAGTTGGGGCTGGAGCCCAAGACTCAGTTCTGATTCCTAGCTTGGTACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CAGGGCCTCCTGTCCAGTCCTCATCACCACCTTAGGTGCCATTTGCCACTCCCTCGGGCACAGAATTGTTaGAGACCAGGCCCCAGAGGA +
Preference number: 4 (lower is better)
Translates to: QGLLSSPHHHLRCHLPLPRAQNC*RPGPRG
Trigger: TCCTCTGGGGCCTGGTCTTCAACAATTCTGTGCCCG...AGGGAGTGGCAAATGGCACCTAAGGTGGTGATGAGGACTGGACAGGAGGCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp TGCATAGTTCAGCATCCCTGGGAGTCTCCTCGCCTCTTGCAGAAACACATAGTCGTCACGTCGTGGCTGTaGCCCAGCAGCACCGCAATG +
Preference number: 4 (lower is better)
Translates to: CIVQHPWESPRLLQKHIVVTSWL*PSSTAM
Trigger: CATTGCGGTGCTGCTGGGTCACAGCCACGACGTGAC...GACTATGTGTTTCTGCAAGAGGCGAGGAGACTCCCAGGGATGCTGAACTATGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp ACTTCTCATTGGTTTCTGTTGGTGCTGGGCAAGAGGTGCACCTCCAAGAAGGTGCGCAATGTTCAGCGCTaGAGTACCCTTCTCCGCCGC +
Preference number: 4 (lower is better)
Translates to: TSHWFLLVLGKRCTSKKVRNVQR*STLLRR
Trigger: GCGGCGGAGAAGGGTACTCCAGCGCTGAACATTGCG...CACCTTCTTGGAGGTGCACCTCTTGCCCAGCACCAACAGAAACCAATGAGAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp ACTTCTCATTGGTTTCTGTTGGTGCTGGGCAAGAGGTGCACCTCCAAGAAGGTGTCTGCCCGTAGCAGCTaGCCTTGGCCTCGGGAATGT +
Preference number: 4 (lower is better)
Translates to: TSHWFLLVLGKRCTSKKVSARSS*PWPREC
Trigger: ACATTCCCGAGGCCAAGGCCAGCTGCTACGGGCAGA...CACCTTCTTGGAGGTGCACCTCTTGCCCAGCACCAACAGAAACCAATGAGAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CAGGGCCTCCTGTCCAGTCCTCATCACCACCTTAGGTGCCATTTGCCACTCCCTCAATTCCATAGCCTGTaGTGGCAAAGATGTACCCGC +
Preference number: 4 (lower is better)
Translates to: QGLLSSPHHHLRCHLPLPQFHSL*WQRCTR
Trigger: GCGGGTACATCTTTGCCACCACAGGCTATGGAATTG...AGGGAGTGGCAAATGGCACCTAAGGTGGTGATGAGGACTGGACAGGAGGCCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp TGCATAGTTCAGCATCCCTGGGAGTCTCCTCGCCTCTTGCAGAAACACATAGTCGCTCCCTGTGGCATGTaGCCCGGCTTGAGGTTTCAG +
Preference number: 4 (lower is better)
Translates to: CIVQHPWESPRLLQKHIVAPCGM*PGLRFQ
Trigger: CTGAAACCTCAAGCCGGGCCACATGCCACAGGGAGC...GACTATGTGTTTCTGCAAGAGGCGAGGAGACTCCCAGGGATGCTGAACTATGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GGGGCACACAGATGGCATTGTACTTCTTCTAGATTACACATGGCTGCTGGCACACGCAGGCTCAGAGTCTaGTTCTCCCACTTGCCCACC +
Preference number: 4 (lower is better)
Translates to: GAHRWHCTSSRLHMAAGTRRLRV*FSHLPT
Trigger: GGTGGGCAAGTGGGAGAATCAGACTCTGAGCCTGCG...TGTGCCAGCAGCCATGTGTAATCTAGAAGAAGTACAATGCCATCTGTGTGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 72 bp ACAGACAGTTGTGAGCCACCATGTGGTTGCAGGGAATaGAACTCAGGACCTCTGGAAGAGCAGCCACTGAGC +
Preference number: 4 (lower is better)
Translates to: TDSCEPPCGCRE*NSGPLEEQPLS
Trigger: GCTCAGTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCTGCAACCACATGGTGGCTCACAACTGTCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATCCGCCGCCGCGTTCTaGGCCGGACCGTGCCAGACC +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLSAAAF*AGPCQT
Trigger: GGTCTGGCACGGTCCGGCGCAGAACGCGGCGGCGGA...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp ATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTTCCGCCGCCGCGTTCTaGGCCGGACCGTGCCAGACC +
Preference number: 4 (lower is better)
Translates to: IGHPTFTLYNVGHSTCFLSAAAF*AGPCQT
Trigger: GGTCTGGCACGGTCCGGCGCAGAACGCGGCGGCGGA...AAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
3UTR CAA 72 bp GAATCACAGGCATGTGCTAGCACACCTGGTTTATGCTaGCCATGCTGGGGATGCAACCCAGACTACACGTGT +
Preference number: 4 (lower is better)
Translates to: ESQACASTPGLC*PCWGCNPDYTC
Trigger: ACACGTGTAGTCTGGGTTGCATCCCCAGCATGGCAAGCATAAACCAGGTGTGCTAGCACATGCCTGTGATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp TGCATAGTTCAGCATCCCTGGGAGTCTCCTCGCCTCTTGCAGAAACACATAGTCTTGAGAGGCAGCTTCTaGAATGCGTGGAGTTCTGCC +
Preference number: 4 (lower is better)
Translates to: CIVQHPWESPRLLQKHIVLRGSF*NAWSSA
Trigger: GGCAGAACTCCACGCATTGCAGAAGCTGCCTCTCAA...GACTATGTGTTTCTGCAAGAGGCGAGGAGACTCCCAGGGATGCTGAACTATGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp TGCATAGTTCAGCATCCCTGGGAGTCTCCTCGCCTCTTGCAGAAACACATAGTCGCTGGACCTGTGTCTTaGCGTCCTCAAAAGAGGTGT +
Preference number: 4 (lower is better)
Translates to: CIVQHPWESPRLLQKHIVAGPVS*RPQKRC
Trigger: ACACCTCTTTTGAGGACGCCAAGACACAGGTCCAGC...GACTATGTGTTTCTGCAAGAGGCGAGGAGACTCCCAGGGATGCTGAACTATGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTGTCACGTCGTGGCTGTaGCCCAGCAGCACCGCAATG +
Preference number: 4 (lower is better)
Translates to: GAIGHPTFTLYNVGHSTCVTSWL*PSSTAM
Trigger: CATTGCGGTGCTGCTGGGTCACAGCCACGACGTGAC...ACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATATTCTGCGCCGGACCGTaGCAGACCAGAAGGGCCGGC +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIFCAGP*QTRRAG
Trigger: GCCGGCCCTTCTGGTCTGGCACGGTCCGGCGCAGAA...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp ACTTCTTCTAGATTACACATGGCTGCTGGCACATGTCACCACATTAACGACTCTCCAAACACCAAGCCATaGATGCGCGCCCCGGACATG +
Preference number: 4 (lower is better)
Translates to: TSSRLHMAAGTCHHINDSPNTKP*MRAPDM
Trigger: CATGTCCGGGGCGCGCATCCATGGCTTGGTGTTTGG...AGAGTCGTTAATGTGGTGACATGTGCCAGCAGCCATGTGTAATCTAGAAGAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 72 bp AGGCAGGGAAAGAAGAACCCAGAGCATGGCAGGAAATaGTCACCAGTGCTGAGGTCATCATCCCTTGAGTCA +
Preference number: 4 (lower is better)
Translates to: RQGKKNPEHGRK*SPVLRSSSLES
Trigger: TGACTCAAGGGATGATGACCTCAGCACTGGTGACAATTTCCTGCCATGCTCTGGGTTCTTCTTTCCCTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GCAGGAGGACCAGTGAATTTGCAAATAGCATCCTTTTTAGAAAGGGGTCATGGTCCCAGACAGAGGCGCTaGAGGGTTCAAGGAAAGCAG +
Preference number: 4 (lower is better)
Translates to: AGGPVNLQIASFLERGHGPRQRR*RVQGKQ
Trigger: CTGCTTTCCTTGAACCCTTCAGCGCCTCTGTCTGGG...ACCATGACCCCTTTCTAAAAAGGATGCTATTTGCAAATTCACTGGTCCTCCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp TTCACCTATCTGGTATGTGCTGTGCTCAGCACATACCTCATAAGATTCCTTGAGAGAGCGAGGTCAATCTaGCTCTTCCAGGGTGAGCCC +
Preference number: 4 (lower is better)
Translates to: FTYLVCAVLSTYLIRFLERARSI*LFQGEP
Trigger: GGGCTCACCCTGGAAGAGGCAGATTGACCTCGCTCT...CTCAAGGAATCTTATGAGGTATGTGCTGAGCACAGCACATACCAGATAGGTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp AGCCTGGGGCACACAGATGGCATTGTACTTCTTCTAGATTACACATGGCTGCTGCTGGCAAGAGAGATTTaGTCCTCTTGCTGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: SLGHTDGIVLLLDYTWLLLAREI*SSCCPP
Trigger: TGGAGGACAGCAAGAGGAGCAAATCTCTCTTGCCAG...CAGCAGCCATGTGTAATCTAGAAGAAGTACAATGCCATCTGTGTGCCCCAGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATCCAAACACCAAGCCATaGATGCGCGCCCCGGACATG +
Preference number: 4 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHPNTKP*MRAPDM
Trigger: CATGTCCGGGGCGCGCATCCATGGCTTGGTGTTTGG...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGGGCACACAGATGGCATTGTACTTCTTCTAGATTACACATGGCTGCTGGCACATGGGAGACTGGGTTCTaGTTTAGAGAATCCTGGCGT +
Preference number: 4 (lower is better)
Translates to: GAHRWHCTSSRLHMAAGTWETGF*FRESWR
Trigger: ACGCCAGGATTCTCTAAACCAGAACCCAGTCTCCCA...TGTGCCAGCAGCCATGTGTAATCTAGAAGAAGTACAATGCCATCTGTGTGCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp ACTTCTTCTAGATTACACATGGCTGCTGGCACATGTCACCACATTAACGACTCTAGTGGCCTGAGTAGGTaGGCAGGTTTGAGAGGCAGC +
Preference number: 4 (lower is better)
Translates to: TSSRLHMAAGTCHHINDSSGLSR*AGLRGS
Trigger: GCTGCCTCTCAAACCTGCCCACCTACTCAGGCCACT...AGAGTCGTTAATGTGGTGACATGTGCCAGCAGCCATGTGTAATCTAGAAGAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GGGGCACACAGATGGCATTGTACTTCTTCTAGATTACACATGGCTGCTGGCACAGTCGTCGTAAGAGACTaGAATGAGACCCGATGGAAA +
Preference number: 4 (lower is better)
Translates to: GAHRWHCTSSRLHMAAGTVVVRD*NETRWK
Trigger: TTTCCATCGGGTCTCATTTCAGTCTCTTACGACGAC...TGTGCCAGCAGCCATGTGTAATCTAGAAGAAGTACAATGCCATCTGTGTGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTGTAGATGCCCCTGCTaGTGGAGAAGAGCAGCCCGG +
Preference number: 4 (lower is better)
Translates to: VLLDIQRLPSIMLAILHVCRCPC*WRRAAR
Trigger: CCGGGCTGCTCTTCTCCATCAGCAGGGGCATCTACA...AACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTAGGCAAGCCGGTTGCCTaGTCCGGGCCCCACAGATTT +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLGKPVA*SGPHRF
Trigger: AAATCTGTGGGGCCCGGAGCAGGCAACCGGCTTGCC...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp GTAGGCCTCCAACTCACAATATTGCCTGGGCATAACCTTGAACTCATAATCCTCTGTGCACTCCATGGATaGAACTGTAGATGCCCCTGC +
Preference number: 4 (lower is better)
Translates to: VGLQLTILPGHNLELIILCALHG*NCRCPC
Trigger: GCAGGGGCATCTACAGTTGCATCCATGGAGTGCACA...GAGGATTATGAGTTCAAGGTTATGCCCAGGCAATATTGTGAGTTGGAGGCCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp TTCACCTATCTGGTATGTGCTGTGCTCAGCACATACCTCATAAGATTCCTTGAGCGATCACCACAAGCCTaGGGTGCACCTGATAGCCTT +
Preference number: 4 (lower is better)
Translates to: FTYLVCAVLSTYLIRFLERSPQA*GAPDSL
Trigger: AAGGCTATCAGGTGCACCCCAGGCTTGTGGTGATCG...CTCAAGGAATCTTATGAGGTATGTGCTGAGCACAGCACATACCAGATAGGTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGGGCACACAGATGGCATTGTACTTCTTCTAGATTACACATGGCTGCTGGCACAGAGGTGGTTGTCATCTaGCTCACAGTCAGAAAAGGA +
Preference number: 4 (lower is better)
Translates to: GAHRWHCTSSRLHMAAGTEVVVI*LTVRKG
Trigger: TCCTTTTCTGACTGTGAGCCAGATGACAACCACCTC...TGTGCCAGCAGCCATGTGTAATCTAGAAGAAGTACAATGCCATCTGTGTGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGGGCACACAGATGGCATTGTACTTCTTCTAGATTACACATGGCTGCTGGCACAGCAGGTCTCAGTCAGTaGGTCTATGTCTTCTACGAT +
Preference number: 4 (lower is better)
Translates to: GAHRWHCTSSRLHMAAGTAGLSQ*VYVFYD
Trigger: ATCGTAGAAGACATAGACCCACTGACTGAGACCTGC...TGTGCCAGCAGCCATGTGTAATCTAGAAGAAGTACAATGCCATCTGTGTGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTGTGGGTTCCTGTTCATaGGCAGTGTGGAGTCCCCCT +
Preference number: 4 (lower is better)
Translates to: GAIGHPTFTLYNVGHSTCVGSCS*AVWSPP
Trigger: AGGGGGACTCCACACTGCCCATGAACAGGAACCCAC...ACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
3UTR CAA 72 bp CAGCTCAGGAATGACAAATGCTTTGAAGACTTCTCATaGGTTTCTGTTGGTGCTGGGCAAGAGGTGCACCTC +
Preference number: 4 (lower is better)
Translates to: QLRNDKCFEDFS*VSVGAGQEVHL
Trigger: GAGGTGCACCTCTTGCCCAGCACCAACAGAAACCAATGAGAAGTCTTCAAAGCATTTGTCATTCCTGAGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 72 bp AGGAAAGTGTCACAGTGCCCGTTCCCTACAGGCAGATaGGTGTCACATGTCCAACAGCACAGTATAATCACT +
Preference number: 4 (lower is better)
Translates to: RKVSQCPFPTGR*VSHVQQHSIIT
Trigger: AGTGATTATACTGTGCTGTTGGACATGTGACACCAATCTGCCTGTAGGGAACGGGCACTGTGACACTTTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 72 bp TCCAAAACAACCTCCCTTGTGATCCCAGCTCAATCTTaGCATCTACAAAATGGGCCTAGTGTGTCCCACCTC +
Preference number: 4 (lower is better)
Translates to: SKTTSLVIPAQS*HLQNGPSVSHL
Trigger: GAGGTGGGACACACTAGGCCCATTTTGTAGATGCAAAGATTGAGCTGGGATCACAAGGGAGGTTGTTTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 72 bp AAATACAGCTCCAAAGAGGTGAAGCTCCTGGCCCTGTaGATTGAGGCACTCCACTTTCTGCATAGTTCAGCA +
Preference number: 4 (lower is better)
Translates to: KYSSKEVKLLAL*IEALHFLHSSA
Trigger: TGCTGAACTATGCAGAAAGTGGAGTGCCTCAATCAACAGGGCCAGGAGCTTCACCTCTTTGGAGCTGTATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp TTCACCTATCTGGTATGTGCTGTGCTCAGCACATACCTCATAAGATTCCTTGAGATGACCGTGGCTTGCTaGTGGATGGAAGCTCCAAAC +
Preference number: 4 (lower is better)
Translates to: FTYLVCAVLSTYLIRFLEMTVAC*WMEAPN
Trigger: GTTTGGAGCTTCCATCCAGCAGCAAGCCACGGTCAT...CTCAAGGAATCTTATGAGGTATGTGCTGAGCACAGCACATACCAGATAGGTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp AGCCTGGGGCACACAGATGGCATTGTACTTCTTCTAGATTACACATGGCTGCTGTTAACCTTTTTCCCATaGTTCCCATTGGTCACCAGG +
Preference number: 4 (lower is better)
Translates to: SLGHTDGIVLLLDYTWLLLTFFP*FPLVTR
Trigger: CCTGGTGACCAATGGGAAGCATGGGAAAAAGGTTAA...CAGCAGCCATGTGTAATCTAGAAGAAGTACAATGCCATCTGTGTGCCCCAGGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATCTGAGGCCAGTCACTTaGTCCACAAACTCCTCCTGG +
Preference number: 4 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHLRPVT*STNSSW
Trigger: CCAGGAGGAGTTTGTGGACCAAGTGACTGGCCTCAG...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GAGAATTATTCTCAGAAATCAAGCTGCGGGCACTGTTTGAAGACTCCTCAGAAGCCGTCACCAACAAACTaGAGCAGAGCGAGGTCAATC +
Preference number: 4 (lower is better)
Translates to: ENYSQKSSCGHCLKTPQKPSPTN*SRARSI
Trigger: GATTGACCTCGCTCTGCTCCAGTTTGTTGGTGACGG...CTTCTGAGGAGTCTTCAAACAGTGCCCGCAGCTTGATTTCTGAGAATAATTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp TGCATAGTTCAGCATCCCTGGGAGTCTCCTCGCCTCTTGCAGAAACACATAGTCATAAGTGAGCCTCTTTaGATGAAGTCAGCAGCTCTT +
Preference number: 4 (lower is better)
Translates to: CIVQHPWESPRLLQKHIVISEPL*MKSAAL
Trigger: AAGAGCTGCTGACTTCATCCAAAGAGGCTCACTTAT...GACTATGTGTTTCTGCAAGAGGCGAGGAGACTCCCAGGGATGCTGAACTATGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCAGTGGCCTGAGTAGGTaGGCAGGTTTGAGAGGCAGC +
Preference number: 4 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSSGLSR*AGLRGS
Trigger: GCTGCCTCTCAAACCTGCCCACCTACTCAGGCCACT...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTATAGATGCACCCCCATaGATGCCCAAGATGGGGATG +
Preference number: 4 (lower is better)
Translates to: GAIGHPTFTLYNVGHSTCIDAPP*MPKMGM
Trigger: CATCCCCATCTTGGGCATTCATGGGGGTGCATCTAT...ACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATGAGCCTCGCTCAGGATaGGGACAGCCTCATCCTTGG +
Preference number: 4 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDEPRSG*GQPHPW
Trigger: CCAAGGATGAGGCTGTCCTCATCCTGAGCGAGGCTC...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTACGGGCACAGAATTGTTaGAGACCAGGCCCCAGAGGA +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLRAQNC*RPGPRG
Trigger: TCCTCTGGGGCCTGGTCTTCAACAATTCTGTGCCCG...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGGAACTTCTTGTCACTaGGGCCAGTCACTTGGTCCA +
Preference number: 4 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHGTSCH*GQSLGP
Trigger: TGGACCAAGTGACTGGCCTCAGTGACAAGAAGTTCC...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATCAGCTGCGTCATAGATaGAAGCGTCCAACTTCCCAG +
Preference number: 4 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHQLRHR*KRPTSQ
Trigger: CTGGGAAGTTGGACGCTTTCATCTATGACGCAGCTG...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTACTGCCTCTTCCAGGGTaGGCCCTTCTGCAGAGCAAT +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLLPLPG*ALLQSN
Trigger: ATTGCTCTGCAGAAGGGCTCACCCTGGAAGAGGCAG...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTACAGAACACACGCCTGTaGAGCAGAAGCGCAGCTTCC +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLQNTRL*SRSAAS
Trigger: GGAAGCTGCGCTTCTGCTTCACAGGCGTGTGTTCTG...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp TTCACCTATCTGGTATGTGCTGTGCTCAGCACATACCTCATAAGATTCCTTGAGGTGAGCCTCTTTGGATaGAGTCAGCAGCTCTTTTGG +
Preference number: 4 (lower is better)
Translates to: FTYLVCAVLSTYLIRFLEVSLFG*SQQLFW
Trigger: CCAAAAGAGCTGCTGACTTCATCCAAAGAGGCTCAC...CTCAAGGAATCTTATGAGGTATGTGCTGAGCACAGCACATACCAGATAGGTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCGCCTTTCCCTGTCCTTaGGGCTTATGCTACGAGAGG +
Preference number: 4 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSAFPCP*GLCYER
Trigger: CCTCTCGTAGCATAAGCCTCAAGGACAGGGAAAGGC...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTGCTTGAGGGGACACTaGACAGGCTCCCGTATAAGT +
Preference number: 4 (lower is better)
Translates to: GAIGHPTFTLYNVGHSTCCLRGH*TGSRIS
Trigger: ACTTATACGGGAGCCTGTTCAGTGTCCCCTCAAGCA...ACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATTGTGCACTCCATGGATaGAACTGTAGATGCCCCTGC +
Preference number: 4 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHCALHG*NCRCPC
Trigger: GCAGGGGCATCTACAGTTGCATCCATGGAGTGCACA...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCGATTTCTTCCAAAGCTaGCGGGGTCGGGAGTTCCCT +
Preference number: 4 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSDFFQS*RGREFP
Trigger: AGGGAACTCCCGACCCCGGCAGCTTTGGAAGAAATC...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp ATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTCGTAGCAGCTGGCCTTaGCCTCGGGAATGTAGGAGA +
Preference number: 4 (lower is better)
Translates to: IGHPTFTLYNVGHSTCFLRSSWP*PRECRR
Trigger: TCTCCTACATTCCCGAGGCCAAGGCCAGCTGCTACG...AAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCATAGCCTGTGGTaGCAAAGATGTACCCGCTCC +
Preference number: 4 (lower is better)
Translates to: GAIGHPTFTLYNVGHSTCFHSLW*QRCTRS
Trigger: GGAGCGGGTACATCTTTGCCACCACAGGCTATGGAA...ACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATGCTCCCTGTGGCATGTaGCCCGGCTTGAGGTTTCAG +
Preference number: 4 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDAPCGM*PGLRFQ
Trigger: CTGAAACCTCAAGCCGGGCCACATGCCACAGGGAGC...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp ATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTGTGGGTTCCTGTTCATaGGCAGTGTGGAGTCCCCCT +
Preference number: 4 (lower is better)
Translates to: IGHPTFTLYNVGHSTCFLVGSCS*AVWSPP
Trigger: AGGGGGACTCCACACTGCCCATGAACAGGAACCCAC...AAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp TGCATAGTTCAGCATCCCTGGGAGTCTCCTCGCCTCTTGCAGAAACACATAGTCTATACTGGTCATTGTTaGGAAGCCCATCTTCATTGT +
Preference number: 4 (lower is better)
Translates to: CIVQHPWESPRLLQKHIVYTGHC*EAHLHC
Trigger: ACAATGAAGATGGGCTTCCCAACAATGACCAGTATA...GACTATGTGTTTCTGCAAGAGGCGAGGAGACTCCCAGGGATGCTGAACTATGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTGGCCCCGACTGTCCCTaGAGCAATATGATGCTGTTG +
Preference number: 4 (lower is better)
Translates to: VLLDIQRLPSIMLAILHVGPDCP*SNMMLL
Trigger: CAACAGCATCATATTGCTCCAGGGACAGTCGGGGCC...AACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
3UTR CAA 72 bp AAGCATTTGAGGCATGCTTTGGTAAGTCATGCAGGGTaGGTTGGAGCCAGACCCAAGACTACTCATGCAAAA +
Preference number: 4 (lower is better)
Translates to: KHLRHALVSHAG*VGARPKTTHAK
Trigger: TTTTGCATGAGTAGTCTTGGGTCTGGCTCCAACCAACCCTGCATGACTTACCAAAGCATGCCTCAAATGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 72 bp GATTATTTCAACCCTTTGAAGCATTTGAGGCATGCTTaGGTAAGTCATGCAGGGTTGGTTGGAGCCAGACCC +
Preference number: 4 (lower is better)
Translates to: DYFNPLKHLRHA*VSHAGLVGARP
Trigger: GGGTCTGGCTCCAACCAACCCTGCATGACTTACCAAAGCATGCCTCAAATGCTTCAAAGGGTTGAAATAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp ACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACACGAGCCTCGCTCAGGATaGGGACAGCCTCATCCTTGG +
Preference number: 4 (lower is better)
Translates to: TFTLYNVGHSTCFLIDKHEPRSG*GQPHPW
Trigger: CCAAGGATGAGGCTGTCCTCATCCTGAGCGAGGCTC...GTGTTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACGCAGGCTCAGAGTCTaGTTCTCCCACTTGCCCACC +
Preference number: 4 (lower is better)
Translates to: PTFTLYNVGHSTCFLIDKRRLRV*FSHLPT
Trigger: GGTGGGCAAGTGGGAGAATCAGACTCTGAGCCTGCG...TTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCCAGTTTTCAAGCTaGCCAAGGCATCCTCTACGC +
Preference number: 4 (lower is better)
Translates to: VLLDIQRLPSIMLAILHVSQFSS*PRHPLR
Trigger: GCGTAGAGGATGCCTTGGTCAGCTTGAAAACTGGGA...AACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATCTGCCTCTTCCAGGGTaGGCCCTTCTGCAGAGCAAT +
Preference number: 4 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDLPLPG*ALLQSN
Trigger: ATTGCTCTGCAGAAGGGCTCACCCTGGAAGAGGCAG...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCCTTTGGATTCAGTGCTaGCAGCCACCTCCACTGTGT +
Preference number: 4 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSLWIQC*QPPPLC
Trigger: ACACAGTGGAGGTGGCTGTCAGCACTGAATCCAAAG...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATACCCCAAGAGTTTGCTTaGGGGGACACTGAACAGGCT +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIPQEFA*GDTEQA
Trigger: AGCCTGTTCAGTGTCCCCTCAAGCAAACTCTTGGGG...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp TTTGAGCTTTCCAAATCCATCAAATTTCCAAAGATGATTGCTCAGATGAGCCACCCCCAAGAGTTTGCTTaGGGGGACACTGAACAGGCT +
Preference number: 4 (lower is better)
Translates to: FELSKSIKFPKMIAQMSHPQEFA*GDTEQA
Trigger: AGCCTGTTCAGTGTCCCCTCAAGCAAACTCTTGGGG...GTGGCTCATCTGAGCAATCATCTTTGGAAATTTGATGGATTTGGAAAGCTCAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp GAGAATTATTCTCAGAAATCAAGCTGCGGGCACTGTTTGAAGACTCCTCAGAAGAGCCATGATCATAGATaGACCCCCATGAATGCCCAA +
Preference number: 4 (lower is better)
Translates to: ENYSQKSSCGHCLKTPQKSHDHR*TPMNAQ
Trigger: TTGGGCATTCATGGGGGTGCATCTATGATCATGGCT...CTTCTGAGGAGTCTTCAAACAGTGCCCGCAGCTTGATTTCTGAGAATAATTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp GGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTCAGAAGGGGAAACAGTaGCATTACTCCTGGAGACCA +
Preference number: 4 (lower is better)
Translates to: GAIGHPTFTLYNVGHSTCQKGKQ*HYSWRP
Trigger: TGGTCTCCAGGAGTAATGGCACTGTTTCCCCTTCTG...ACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp GTAGGCCTCCAACTCACAATATTGCCTGGGCATAACCTTGAACTCATAATCCTCCTGAGACTATCCTTGTaGCTGTTGGCCACAAATGTT +
Preference number: 4 (lower is better)
Translates to: VGLQLTILPGHNLELIILLRLSL*LLATNV
Trigger: AACATTTGTGGCCAACAGGCACAAGGATAGTCTCAG...GAGGATTATGAGTTCAAGGTTATGCCCAGGCAATATTGTGAGTTGGAGGCCTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTAGATTTCTTCCAAAGCTaGCGGGGTCGGGAGTTCCCT +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLDFFQS*RGREFP
Trigger: AGGGAACTCCCGACCCCGGCAGCTTTGGAAGAAATC...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp GGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTAGGCAGCTTCTGCAATaGGTGGAGTTCTGCCGATAT +
Preference number: 4 (lower is better)
Translates to: GAIGHPTFTLYNVGHSTCRQLLQ*VEFCRY
Trigger: ATATCGGCAGAACTCCACGCATTGCAGAAGCTGCCT...ACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCGAGATTTGCTCCTCTTaGTGTCCTCCAGACCTTGGG +
Preference number: 4 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSEICSS*CPPDLG
Trigger: CCCAAGGTCTGGAGGACAGCAAGAGGAGCAAATCTC...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACGCAATGTTCAGCGCTaGAGTACCCTTCTCCGCCGC +
Preference number: 4 (lower is better)
Translates to: PTFTLYNVGHSTCFLIDKRNVQR*STLLRR
Trigger: GCGGCGGAGAAGGGTACTCCAGCGCTGAACATTGCG...TTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTAACCGTGGCTTGCTGCTaGATGGAAGCTCCAAACTGG +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLTVACC*MEAPNW
Trigger: CCAGTTTGGAGCTTCCATCCAGCAGCAAGCCACGGT...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCGCTGGACCTGTGTCTTaGCGTCCTCAAAAGAGGTGT +
Preference number: 4 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSAGPVS*RPQKRC
Trigger: ACACCTCTTTTGAGGACGCCAAGACACAGGTCCAGC...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTGGATCTTCTTCAGCTaGACCTGTGTCTTGGCGTCC +
Preference number: 4 (lower is better)
Translates to: VLLDIQRLPSIMLAILHVWIFFS*TCVLAS
Trigger: GGACGCCAAGACACAGGTCCAGCTGAAGAAGATCCA...AACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATAGGATGACAGAGGAGTaGATCTTCTTCAGCTGGACC +
Preference number: 4 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHRMTEE*IFFSWT
Trigger: GGTCCAGCTGAAGAAGATCCACTCCTCTGTCATCCT...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CATGTATTCATTTGTTTTTGGTTAAGGATTCACCTATCTGGTATGTGCTGTGCTCGTAGCAGCTGGCCTTaGCCTCGGGAATGTAGGAGA +
Preference number: 4 (lower is better)
Translates to: HVFICFWLRIHLSGMCCARSSWP*PRECRR
Trigger: TCTCCTACATTCCCGAGGCCAAGGCCAGCTGCTACG...AGCACAGCACATACCAGATAGGTGAATCCTTAACCAAAAACAAATGAATACATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp ACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACACTCTGCCCGTAGCAGCTaGCCTTGGCCTCGGGAATGT +
Preference number: 4 (lower is better)
Translates to: TFTLYNVGHSTCFLIDKHSARSS*PWPREC
Trigger: ACATTCCCGAGGCCAAGGCCAGCTGCTACGGGCAGA...GTGTTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCAGTCAGCAGCTCTTTTaGGTGAGTCCATTCGCGAGG +
Preference number: 4 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSSQQLF*VSPFAR
Trigger: CCTCGCGAATGGACTCACCCAAAAGAGCTGCTGACT...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTGGCGTAGAGACTCCATaGATTTCTTCCAAAGCTGCC +
Preference number: 4 (lower is better)
Translates to: GAIGHPTFTLYNVGHSTCGVETP*ISSKAA
Trigger: GGCAGCTTTGGAAGAAATCCATGGAGTCTCTACGCC...ACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTGGGAGACTGGGTTCTaGTTTAGAGAATCCTGGCGT +
Preference number: 4 (lower is better)
Translates to: GAIGHPTFTLYNVGHSTCWETGF*FRESWR
Trigger: ACGCCAGGATTCTCTAAACCAGAACCCAGTCTCCCA...ACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTGGACTCTTTAGGGAGTaGGTCCTATTCTCTGCAGTC +
Preference number: 4 (lower is better)
Translates to: GAIGHPTFTLYNVGHSTCGLFRE*VLFSAV
Trigger: GACTGCAGAGAATAGGACCCACTCCCTAAAGAGTCC...ACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTGTTCATGGGCAGTGTaGAGTCCCCCTTGCGGAAAT +
Preference number: 4 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSCSWAV*SPPCGN
Trigger: ATTTCCGCAAGGGGGACTCCACACTGCCCATGAACA...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp TTTGAGCTTTCCAAATCCATCAAATTTCCAAAGATGATTGCTCAGATGAGCCACGGCCCCGACTGTCCCTaGAGCAATATGATGCTGTTG +
Preference number: 4 (lower is better)
Translates to: FELSKSIKFPKMIAQMSHGPDCP*SNMMLL
Trigger: CAACAGCATCATATTGCTCCAGGGACAGTCGGGGCC...GTGGCTCATCTGAGCAATCATCTTTGGAAATTTGATGGATTTGGAAAGCTCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 72 bp ACTGCTTACAGAAAGAGGTTCTACTTTCCAGTCCATTaGCATGCCCTCAGTGCCAAACTGGACATTAGAGGA +
Preference number: 4 (lower is better)
Translates to: TAYRKRFYFPVH*HALSAKLDIRG
Trigger: TCCTCTAATGTCCAGTTTGGCACTGAGGGCATGCAAATGGACTGGAAAGTAGAACCTCTTTCTGTAAGCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 72 bp GCGAACCTGACACTTCTTTTTGCCACACATAGGCACTaGGGACATTACAAAGTGCATTTCCTACTCTTTCCC +
Preference number: 4 (lower is better)
Translates to: ANLTLLFATHRH*GHYKVHFLLFP
Trigger: GGGAAAGAGTAGGAAATGCACTTTGTAATGTCCCAAGTGCCTATGTGTGGCAAAAAGAAGTGTCAGGTTCGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 72 bp ATAGTTTGGTTCTGGTTCACAGGAGATTTGTGTGCTTaGAAATACAGCTCCAAAGAGGTGAAGCTCCTGGCC +
Preference number: 4 (lower is better)
Translates to: IVWFWFTGDLCA*KYSSKEVKLLA
Trigger: GGCCAGGAGCTTCACCTCTTTGGAGCTGTATTTCAAAGCACACAAATCTCCTGTGAACCAGAACCAAACTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCAAGAGGTGTCCAGTGTaGTCACGTTCTGCATATCCC +
Preference number: 4 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSKRCPV*SRSAYP
Trigger: GGGATATGCAGAACGTGATCACACTGGACACCTCTT...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTAGCAGTAGAGCAGGATaGCAGAGGAGTGGATCTTCT +
Preference number: 4 (lower is better)
Translates to: VLLDIQRLPSIMLAILHVSSRAG*QRSGSS
Trigger: AGAAGATCCACTCCTCTGTCATCCTGCTCTACTGCT...AACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCGATAGCCTTCCTCAGTaGAGGACAAGTCCTTGCCAT +
Preference number: 4 (lower is better)
Translates to: AIGHPTFTLYNVGHSTCFDSLPQ*RTSPCH
Trigger: ATGGCAAGGACTTGTCCTTCACTGAGGAAGGCTATC...GAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACCCAGACAGAGGCGCTaGAGGGTTCAAGGAAAGCAG +
Preference number: 4 (lower is better)
Translates to: PTFTLYNVGHSTCFLIDKPRQRR*RVQGKQ
Trigger: CTGCTTTCCTTGAACCCTTCAGCGCCTCTGTCTGGG...TTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATCAATGGCAGAGACAATaGGCAGCATCACGAACATCA +
Preference number: 4 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHQWQRQ*AASRTS
Trigger: TGATGTTCGTGATGCTGCTCATTGTCTCTGCCATTG...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTCAATGGCAGAGACAATaGGCAGCATCACGAACATCA +
Preference number: 4 (lower is better)
Translates to: GAIGHPTFTLYNVGHSTCQWQRQ*AASRTS
Trigger: TGATGTTCGTGATGCTGCTCATTGTCTCTGCCATTG...ACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp TTTGAGCTTTCCAAATCCATCAAATTTCCAAAGATGATTGCTCAGATGAGCCACTCCCAGTTTTCAAGCTaGCCAAGGCATCCTCTACGC +
Preference number: 4 (lower is better)
Translates to: FELSKSIKFPKMIAQMSHSQFSS*PRHPLR
Trigger: GCGTAGAGGATGCCTTGGTCAGCTTGAAAACTGGGA...GTGGCTCATCTGAGCAATCATCTTTGGAAATTTGATGGATTTGGAAAGCTCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACAGAACACACGCCTGTaGAGCAGAAGCGCAGCTTCC +
Preference number: 4 (lower is better)
Translates to: PTFTLYNVGHSTCFLIDKQNTRL*SRSAAS
Trigger: GGAAGCTGCGCTTCTGCTTCACAGGCGTGTGTTCTG...TTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTGACCCAGTCAGATTaGAGTCTGGAGACTTCTTCT +
Preference number: 4 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHVTQSD*SLETSS
Trigger: AGAAGAAGTCTCCAGACTTCAATCTGACTGGGTCAC...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTGTGACCCAGTCAGATTaGAGTCTGGAGACTTCTTCT +
Preference number: 4 (lower is better)
Translates to: GAIGHPTFTLYNVGHSTCVTQSD*SLETSS
Trigger: AGAAGAAGTCTCCAGACTTCAATCTGACTGGGTCAC...ACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp ATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTAGCAGCTCTTTTGGGTaGGTCCATTCGCGAGGAGTT +
Preference number: 4 (lower is better)
Translates to: IGHPTFTLYNVGHSTCFLSSSFG*VHSRGV
Trigger: AACTCCTCGCGAATGGACTCACCCAAAAGAGCTGCT...AAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTAAGCAGCTCTTTTGGGTaGGTCCATTCGCGAGGAGTT +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLSSSFG*VHSRGV
Trigger: AACTCCTCGCGAATGGACTCACCCAAAAGAGCTGCT...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCGTGAGCCTCTTTGGATaGAGTCAGCAGCTCTTTTGG +
Preference number: 4 (lower is better)
Translates to: AIGHPTFTLYNVGHSTCFVSLFG*SQQLFW
Trigger: CCAAAAGAGCTGCTGACTTCATCCAAAGAGGCTCAC...GAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTAGGGTTGCCTGTCTCCTaGAGCATCTGGTCTTCATCA +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLGLPVS*SIWSSS
Trigger: TGATGAAGACCAGATGCTTCAGGAGACAGGCAACCC...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAATGACCGTGGCTTGCTaGTGGATGGAAGCTCCAAAC +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIMTVAC*WMEAPN
Trigger: GTTTGGAGCTTCCATCCAGCAGCAAGCCACGGTCAT...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAGCATGACCGTGGCTTaGTGCTGGATGGAAGCTCCA +
Preference number: 4 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDSMTVA*CWMEAP
Trigger: TGGAGCTTCCATCCAGCAGCAAGCCACGGTCATGCT...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATAGTGTGATCACGTTCTaGATATCCCAGCCCACAAAG +
Preference number: 4 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHSVITF*ISQPTK
Trigger: CTTTGTGGGCTGGGATATGCAGAACGTGATCACACT...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTAACCGTCTCTCACTCTTaGCTCCAGACTGTAGTCCCA +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLTVSHS*LQTVVP
Trigger: TGGGACTACAGTCTGGAGGCAAGAGTGAGAGACGGT...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp ACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACACAGAGCGAGGTCAATCTaGCTCTTCCAGGGTGAGCCC +
Preference number: 4 (lower is better)
Translates to: TFTLYNVGHSTCFLIDKHRARSI*LFQGEP
Trigger: GGGCTCACCCTGGAAGAGGCAGATTGACCTCGCTCT...GTGTTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp ATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTTTGAGAGGCAGCTTCTaGAATGCGTGGAGTTCTGCC +
Preference number: 4 (lower is better)
Translates to: IGHPTFTLYNVGHSTCFLLRGSF*NAWSSA
Trigger: GGCAGAACTCCACGCATTGCAGAAGCTGCCTCTCAA...AAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp TTTGAGCTTTCCAAATCCATCAAATTTCCAAAGATGATTGCTCAGATGAGCCACGAGATTTGCTCCTCTTaGTGTCCTCCAGACCTTGGG +
Preference number: 4 (lower is better)
Translates to: FELSKSIKFPKMIAQMSHEICSS*CPPDLG
Trigger: CCCAAGGTCTGGAGGACAGCAAGAGGAGCAAATCTC...GTGGCTCATCTGAGCAATCATCTTTGGAAATTTGATGGATTTGGAAAGCTCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATCTGAGGCCAGTCACTTaGTCCACAAACTCCTCCTGG +
Preference number: 4 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDLRPVT*STNSSW
Trigger: CCAGGAGGAGTTTGTGGACCAAGTGACTGGCCTCAG...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp AACGGCCACTATGTCATAGACAGAAGATCCACACTTAGATATCGAAGACATAAATTCCATAGCCTGTGGTaGCAAAGATGTACCCGCTCC +
Preference number: 4 (lower is better)
Translates to: NGHYVIDRRSTLRYRRHKFHSLW*QRCTRS
Trigger: GGAGCGGGTACATCTTTGCCACCACAGGCTATGGAA...TTTATGTCTTCGATATCTAAGTGTGGATCTTCTGTCTATGACATAGTGGCCGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATACCGTCACCAACAAACTaGAGCAGAGCGAGGTCAATC +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIPSPTN*SRARSI
Trigger: GATTGACCTCGCTCTGCTCCAGTTTGTTGGTGACGG...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTAAGTCAGCAGCTCTTTTaGGTGAGTCCATTCGCGAGG +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLSQQLF*VSPFAR
Trigger: CCTCGCGAATGGACTCACCCAAAAGAGCTGCTGACT...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp AACGGCCACTATGTCATAGACAGAAGATCCACACTTAGATATCGAAGACATAAATGTTCATGGGCAGTGTaGAGTCCCCCTTGCGGAAAT +
Preference number: 4 (lower is better)
Translates to: NGHYVIDRRSTLRYRRHKCSWAV*SPPCGN
Trigger: ATTTCCGCAAGGGGGACTCCACACTGCCCATGAACA...TTTATGTCTTCGATATCTAAGTGTGGATCTTCTGTCTATGACATAGTGGCCGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTAATATACACATCACTGTaGCCCCGACTGTCCCTGGAG +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLIYTSL*PRLSLE
Trigger: CTCCAGGGACAGTCGGGGCCACAGTGATGTGTATAT...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAATATACACATCACTGTaGCCCCGACTGTCCCTGGAG +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIIYTSL*PRLSLE
Trigger: CTCCAGGGACAGTCGGGGCCACAGTGATGTGTATAT...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
3UTR CAA 72 bp TGTCTGGGAGACCTGCCCACATGTATTCATTTGTTTTaGGTTAAGGATTCACCTATCTGGTATGTGCTGTGC +
Preference number: 4 (lower is better)
Translates to: CLGDLPTCIHLF*VKDSPIWYVLC
Trigger: GCACAGCACATACCAGATAGGTGAATCCTTAACCAAAAACAAATGAATACATGTGGGCAGGTCTCCCAGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 72 bp GACTCCTTCAAACAAGCCCACATGGTTACCTTTCACTaGGAACCTGACCACCTCGTTTTCTTCTTTGAAATC +
Preference number: 4 (lower is better)
Translates to: DSFKQAHMVTFH*EPDHLVFFFEI
Trigger: GATTTCAAAGAAGAAAACGAGGTGGTCAGGTTCCAAGTGAAAGGTAACCATGTGGGCTTGTTTGAAGGAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 72 bp ATGCGACATGAGTATTTATCAGCCTTGTTGTCCTTGTaGCTGGTGAGGCTTATAACAGCATTAGCCTCAGTC +
Preference number: 4 (lower is better)
Translates to: MRHEYLSALLSL*LVRLITALASV
Trigger: GACTGAGGCTAATGCTGTTATAAGCCTCACCAGCAACAAGGACAACAAGGCTGATAAATACTCATGTCGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 72 bp TTCCTAGGGTACATGCGACATGAGTATTTATCAGCCTaGTTGTCCTTGTTGCTGGTGAGGCTTATAACAGCA +
Preference number: 4 (lower is better)
Translates to: FLGYMRHEYLSA*LSLLLVRLITA
Trigger: TGCTGTTATAAGCCTCACCAGCAACAAGGACAACAAGGCTGATAAATACTCATGTCGCATGTACCCTAGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAGCCTTCCTCAGTaGAGGACAAGTCCTTGCCAT +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIDSLPQ*RTSPCH
Trigger: ATGGCAAGGACTTGTCCTTCACTGAGGAAGGCTATC...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGAAGTCCACCACTTCTaGACGCTCCTCATTGATGGT +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIEVHHF*TLLIDG
Trigger: ACCATCAATGAGGAGCGTTCAGAAGTGGTGGACTTC...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTAGAAGTCCACCACTTCTaGACGCTCCTCATTGATGGT +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLEVHHF*TLLIDG
Trigger: ACCATCAATGAGGAGCGTTCAGAAGTGGTGGACTTC...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp ATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTCTACGCCCCTCTGGTTaGATTTGGTCATGTACTGGT +
Preference number: 4 (lower is better)
Translates to: IGHPTFTLYNVGHSTCFLLRPSG*IWSCTG
Trigger: ACCAGTACATGACCAAATTCAACCAGAGGGGCGTAG...AAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATCAGCTGCGTCATAGATaGAAGCGTCCAACTTCCCAG +
Preference number: 4 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDQLRHR*KRPTSQ
Trigger: CTGGGAAGTTGGACGCTTTCATCTATGACGCAGCTG...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTATACTGTCCTTCCCTTaGAAGGACCTGTTATCTGAG +
Preference number: 4 (lower is better)
Translates to: GAIGHPTFTLYNVGHSTCILSFP*KDLLSE
Trigger: CTCAGATAACAGGTCCTTTCAAGGGAAGGACAGTAT...ACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CATGTATTCATTTGTTTTTGGTTAAGGATTCACCTATCTGGTATGTGCTGTGCTCTTTGGATTCAGTGCTaGCAGCCACCTCCACTGTGT +
Preference number: 4 (lower is better)
Translates to: HVFICFWLRIHLSGMCCALWIQC*QPPPLC
Trigger: ACACAGTGGAGGTGGCTGTCAGCACTGAATCCAAAG...AGCACAGCACATACCAGATAGGTGAATCCTTAACCAAAAACAAATGAATACATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATTGCTTGAGGGGACACTaGACAGGCTCCCGTATAAGT +
Preference number: 4 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDCLRGH*TGSRIS
Trigger: ACTTATACGGGAGCCTGTTCAGTGTCCCCTCAAGCA...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp ACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACACAGCATGACCGTGGCTTaGTGCTGGATGGAAGCTCCA +
Preference number: 4 (lower is better)
Translates to: TFTLYNVGHSTCFLIDKHSMTVA*CWMEAP
Trigger: TGGAGCTTCCATCCAGCAGCAAGCCACGGTCATGCT...GTGTTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCAGTGTGATCACGTTCTaGATATCCCAGCCCACAAAG +
Preference number: 4 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSSVITF*ISQPTK
Trigger: CTTTGTGGGCTGGGATATGCAGAACGTGATCACACT...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp GGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTGTTGGCTGTGTAACTTaGAAGGAAGATGACGGCAAA +
Preference number: 4 (lower is better)
Translates to: GAIGHPTFTLYNVGHSTCVGCVT*KEDDGK
Trigger: TTTGCCGTCATCTTCCTTGCAAGTTACACAGCCAAC...ACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATACTGGCAAGAGAGATTTaGTCCTCTTGCTGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLILAREI*SSCCPP
Trigger: TGGAGGACAGCAAGAGGAGCAAATCTCTCTTGCCAG...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATGGCTTGCTGCTGGATaGAAGCTCCAAACTGGAAGA +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLWLAAG*KLQTGR
Trigger: TCTTCCAGTTTGGAGCTTCCATCCAGCAGCAAGCCA...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp ACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACACACCGTGGCTTGCTGCTaGATGGAAGCTCCAAACTGG +
Preference number: 4 (lower is better)
Translates to: TFTLYNVGHSTCFLIDKHTVACC*MEAPNW
Trigger: CCAGTTTGGAGCTTCCATCCAGCAGCAAGCCACGGT...GTGTTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATTGGATCTTCTTCAGCTaGACCTGTGTCTTGGCGTCC +
Preference number: 4 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDWIFFS*TCVLAS
Trigger: GGACGCCAAGACACAGGTCCAGCTGAAGAAGATCCA...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTAAGGATGACAGAGGAGTaGATCTTCTTCAGCTGGACC +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLRMTEE*IFFSWT
Trigger: GGTCCAGCTGAAGAAGATCCACTCCTCTGTCATCCT...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp ACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACACCGATCACCACAAGCCTaGGGTGCACCTGATAGCCTT +
Preference number: 4 (lower is better)
Translates to: TFTLYNVGHSTCFLIDKHRSPQA*GAPDSL
Trigger: AAGGCTATCAGGTGCACCCCAGGCTTGTGGTGATCG...GTGTTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGTAAAAGAAGGCCCATaGGGAGCTTTCCCTTTGGCT +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIVKEGP*GAFPLA
Trigger: AGCCAAAGGGAAAGCTCCCCATGGGCCTTCTTTTAC...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp ATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTCAATTCCATAGCCTGTaGTGGCAAAGATGTACCCGC +
Preference number: 4 (lower is better)
Translates to: IGHPTFTLYNVGHSTCFLQFHSL*WQRCTR
Trigger: GCGGGTACATCTTTGCCACCACAGGCTATGGAATTG...AAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGGGCACACAGATGGCATTGTACTTCTTCTAGATTACACATGGCTGCTGGCACATTATCCTTGGTCTTGTaGTTCTTATTATTATCTGGC +
Preference number: 4 (lower is better)
Translates to: GAHRWHCTSSRLHMAAGTLSLVL*FLLLSG
Trigger: GCCAGATAATAATAAGAACCACAAGACCAAGGATAA...TGTGCCAGCAGCCATGTGTAATCTAGAAGAAGTACAATGCCATCTGTGTGCCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTAGATCTAAGTGGAAGCTaGGCTCCTTCTCACCATCGA +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLDLSGS*APSHHR
Trigger: TCGATGGTGAGAAGGAGCCCAGCTTCCACTTAGATC...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATCTAAGTGGAAGCTaGGCTCCTTCTCACCATCGA +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIDLSGS*APSHHR
Trigger: TCGATGGTGAGAAGGAGCCCAGCTTCCACTTAGATC...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp ATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTTGTGGAGGATCTAAGTaGAAGCTGGGCTCCTTCTCA +
Preference number: 4 (lower is better)
Translates to: IGHPTFTLYNVGHSTCFLCGGSK*KLGSFS
Trigger: TGAGAAGGAGCCCAGCTTCCACTTAGATCCTCCACA...AAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GCAACTGTATTCACAGAAGTGCATTCAATCATCTCTGATCTGTATCAAGCTGACACTGCCCTCACTATGTaGGGAACCCTTGTCTTTCAA +
Preference number: 4 (lower is better)
Translates to: ATVFTEVHSIISDLYQADTALTM*GTLVFQ
Trigger: TTGAAAGACAAGGGTTCCCCACATAGTGAGGGCAGT...GTCAGCTTGATACAGATCAGAGATGATTGAATGCACTTCTGTGAATACAGTTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCAGCTTCTGCAATGCGTaGAGTTCTGCCGATATCGAT +
Preference number: 4 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSSFCNA*SSADID
Trigger: ATCGATATCGGCAGAACTCCACGCATTGCAGAAGCT...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTTAGCTTGTTCTTCTaGAACTGGAGGGCGTTGTTC +
Preference number: 4 (lower is better)
Translates to: GAIGHPTFTLYNVGHSTCFSLFF*NWRALF
Trigger: GAACAACGCCCTCCAGTTCCAGAAGAACAAGCTAAA...ACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
3UTR CAA 72 bp CACTTGTGTTGCCCCGGGAGTTATGTACATATCAGTTaGCACACACATGTCAAATCCCATTCCTTAAAACAG +
Preference number: 4 (lower is better)
Translates to: HLCCPGSYVHIS*HTHVKSHSLKQ
Trigger: CTGTTTTAAGGAATGGGATTTGACATGTGTGTGCAAACTGATATGTACATAACTCCCGGGGCAACACAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CATGTATTCATTTGTTTTTGGTTAAGGATTCACCTATCTGGTATGTGCTGTGCTATAAAATCCAGCATCTaGGCCACAGCCTCTTGGTCC +
Preference number: 4 (lower is better)
Translates to: HVFICFWLRIHLSGMCCAIKSSI*ATASWS
Trigger: GGACCAAGAGGCTGTGGCTCAGATGCTGGATTTTAT...AGCACAGCACATACCAGATAGGTGAATCCTTAACCAAAAACAAATGAATACATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp ATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTGTCGTCGTAAGAGACTaGAATGAGACCCGATGGAAA +
Preference number: 4 (lower is better)
Translates to: IGHPTFTLYNVGHSTCFLVVVRD*NETRWK
Trigger: TTTCCATCGGGTCTCATTTCAGTCTCTTACGACGAC...AAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCGGTAGAGGTCATAGGTaGACTTTACAGTTCTGGACA +
Preference number: 4 (lower is better)
Translates to: AIGHPTFTLYNVGHSTCFGRGHR*TLQFWT
Trigger: TGTCCAGAACTGTAAAGTTCACCTATGACCTCTACC...GAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CTTATTGTCTGGGTCAGACTTACATGCATACCATATTGCTTATTCTGTATTAGAGGAACTTCTTGTCACTaGGGCCAGTCACTTGGTCCA +
Preference number: 4 (lower is better)
Translates to: LIVWVRLTCIPYCLFCIRGTSCH*GQSLGP
Trigger: TGGACCAAGTGACTGGCCTCAGTGACAAGAAGTTCC...TCTAATACAGAATAAGCAATATGGTATGCATGTAAGTCTGACCCAGACAATAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GAGAATTATTCTCAGAAATCAAGCTGCGGGCACTGTTTGAAGACTCCTCAGAAGCAAATTTCCCTTGTCTaGAACCATGTCCACAATAAG +
Preference number: 4 (lower is better)
Translates to: ENYSQKSSCGHCLKTPQKQISLV*NHVHNK
Trigger: CTTATTGTGGACATGGTTTCAGACAAGGGAAATTTG...CTTCTGAGGAGTCTTCAAACAGTGCCCGCAGCTTGATTTCTGAGAATAATTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCATACTGTCCTTCCCTTaGAAGGACCTGTTATCTGAG +
Preference number: 4 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSILSFP*KDLLSE
Trigger: CTCAGATAACAGGTCCTTTCAAGGGAAGGACAGTAT...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CTTATTGTCTGGGTCAGACTTACATGCATACCATATTGCTTATTCTGTATTAGAGGGTTGCCTGTCTCCTaGAGCATCTGGTCTTCATCA +
Preference number: 4 (lower is better)
Translates to: LIVWVRLTCIPYCLFCIRGLPVS*SIWSSS
Trigger: TGATGAAGACCAGATGCTTCAGGAGACAGGCAACCC...TCTAATACAGAATAAGCAATATGGTATGCATGTAAGTCTGACCCAGACAATAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp ATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTAGCCATGATCATAGATaGACCCCCATGAATGCCCAA +
Preference number: 4 (lower is better)
Translates to: IGHPTFTLYNVGHSTCFLSHDHR*TPMNAQ
Trigger: TTGGGCATTCATGGGGGTGCATCTATGATCATGGCT...AAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp CTTATTGTCTGGGTCAGACTTACATGCATACCATATTGCTTATTCTGTATTAGAACCGTCTCTCACTCTTaGCTCCAGACTGTAGTCCCA +
Preference number: 4 (lower is better)
Translates to: LIVWVRLTCIPYCLFCIRTVSHS*LQTVVP
Trigger: TGGGACTACAGTCTGGAGGCAAGAGTGAGAGACGGT...TCTAATACAGAATAAGCAATATGGTATGCATGTAAGTCTGACCCAGACAATAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATACGATGCAGAACCCCTTaGAGCACTTCTTCACATTCA +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIRCRTP*STSSHS
Trigger: TGAATGTGAAGAAGTGCTGCAAGGGGTTCTGCATCG...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTACGATGCAGAACCCCTTaGAGCACTTCTTCACATTCA +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLRCRTP*STSSHS
Trigger: TGAATGTGAAGAAGTGCTGCAAGGGGTTCTGCATCG...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTAACCTTTTTCCCATaGTTCCCATTGGTCACCAGG +
Preference number: 4 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSLTFFP*FPLVTR
Trigger: CCTGGTGACCAATGGGAAGCATGGGAAAAAGGTTAA...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp GCAACTGTATTCACAGAAGTGCATTCAATCATCTCTGATCTGTATCAAGCTGACGAAGCTTTAGCATGTTaGTCTGTGACCCAGTCAGAT +
Preference number: 4 (lower is better)
Translates to: ATVFTEVHSIISDLYQADEALAC*SVTQSD
Trigger: ATCTGACTGGGTCACAGAGCAACATGCTAAAGCTTC...GTCAGCTTGATACAGATCAGAGATGATTGAATGCACTTCTGTGAATACAGTTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAGGCAGCTTCTGCAATaGGTGGAGTTCTGCCGATAT +
Preference number: 4 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDRQLLQ*VEFCRY
Trigger: ATATCGGCAGAACTCCACGCATTGCAGAAGCTGCCT...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTACAAACTGGAAGAACGTaGATGTCGGATCCTTGTCAG +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLQTGRT*MSDPCQ
Trigger: CTGACAAGGATCCGACATCCACGTTCTTCCAGTTTG...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATATCCCGGAGACCAAACTaGGGACAATCCAGAAGAAAT +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLISRRPN*GQSRRN
Trigger: ATTTCTTCTGGATTGTCCCCAGTTTGGTCTCCGGGA...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATAGAATTTCTCCAACATaGAAGATGCGGCAGTGGTTA +
Preference number: 4 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHRISPT*KMRQWL
Trigger: TAACCACTGCCGCATCTTCCATGTTGGAGAAATTCT...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCACATTGACCATAAATTaGTGCAGAGTGTGTAGCGGG +
Preference number: 4 (lower is better)
Translates to: AIGHPTFTLYNVGHSTCFTLTIN*CRVCSG
Trigger: CCCGCTACACACTCTGCACCAATTTATGGTCAATGT...GAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGCAGGTCTCAGTCAGTaGGTCTATGTCTTCTACGAT +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIAGLSQ*VYVFYD
Trigger: ATCGTAGAAGACATAGACCCACTGACTGAGACCTGC...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGTGCCTTTAGGATTCTaGACGGGCACAGAATTGTTG +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIVPLGF*TGTELL
Trigger: CAACAATTCTGTGCCCGTCCAGAATCCTAAAGGCAC...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp AACGGCCACTATGTCATAGACAGAAGATCCACACTTAGATATCGAAGACATAAAGTGCCTTTAGGATTCTaGACGGGCACAGAATTGTTG +
Preference number: 4 (lower is better)
Translates to: NGHYVIDRRSTLRYRRHKVPLGF*TGTELL
Trigger: CAACAATTCTGTGCCCGTCCAGAATCCTAAAGGCAC...TTTATGTCTTCGATATCTAAGTGTGGATCTTCTGTCTATGACATAGTGGCCGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATGGCGTAGAGACTCCATaGATTTCTTCCAAAGCTGCC +
Preference number: 4 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDGVETP*ISSKAA
Trigger: GGCAGCTTTGGAAGAAATCCATGGAGTCTCTACGCC...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GCAACTGTATTCACAGAAGTGCATTCAATCATCTCTGATCTGTATCAAGCTGACATGGGCTACCTCTTCTaGAAGATACCTAGGACTCTT +
Preference number: 4 (lower is better)
Translates to: ATVFTEVHSIISDLYQADMGYLF*KIPRTL
Trigger: AAGAGTCCTAGGTATCTTCCAGAAGAGGTAGCCCAT...GTCAGCTTGATACAGATCAGAGATGATTGAATGCACTTCTGTGAATACAGTTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTGTTCTTATTATTATCTaGCTCCCTGTGGCATGTGGC +
Preference number: 4 (lower is better)
Translates to: VLLDIQRLPSIMLAILHVVLIII*LPVACG
Trigger: GCCACATGCCACAGGGAGCCAGATAATAATAAGAAC...AACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTACCTTCTCACCATCGATaGTGTAGATCTTATCCCTGG +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLPSHHR*CRSYPW
Trigger: CCAGGGATAAGATCTACACCATCGATGGTGAGAAGG...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTAACTGCCCTCACTATGTaGGGAACCCTTGTCTTTCAA +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLTALTM*GTLVFQ
Trigger: TTGAAAGACAAGGGTTCCCCACATAGTGAGGGCAGT...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTTTAGCTTGTTCTTCTaGAACTGGAGGGCGTTGTTC +
Preference number: 4 (lower is better)
Translates to: VLLDIQRLPSIMLAILHVFSLFF*NWRALF
Trigger: GAACAACGCCCTCCAGTTCCAGAAGAACAAGCTAAA...AACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
3UTR CAA 72 bp ACACAAAGAAACAGTCCAGGAATGCGCATAATGCTATaGGGTGCCTTCAACTCCTTTGAAAGAGATTTTGGT +
Preference number: 4 (lower is better)
Translates to: TQRNSPGMRIML*GAFNSFERDFG
Trigger: ACCAAAATCTCTTTCAAAGGAGTTGAAGGCACCCAATAGCATTATGCGCATTCCTGGACTGTTTCTTTGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 72 bp TTTCAAGTAGAGACCCCAAAACTCTCAATGAACATTTaGACCCTATTTAACCAAAGGAAGAGGGAGGCACAG +
Preference number: 4 (lower is better)
Translates to: FQVETPKLSMNI*TLFNQRKREAQ
Trigger: CTGTGCCTCCCTCTTCCTTTGGTTAAATAGGGTCAAAATGTTCATTGAGAGTTTTGGGGTCTCTACTTGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 72 bp AAGCAGCATATATTGCACACTCTTCTCCCCATAATTTaGTTCCTTAAGGGGACAAAGAGCATCAGTGCTCAA +
Preference number: 4 (lower is better)
Translates to: KQHILHTLLPII*FLKGTKSISAQ
Trigger: TTGAGCACTGATGCTCTTTGTCCCCTTAAGGAACAAAATTATGGGGAGAAGAGTGTGCAATATATGCTGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
3UTR CAA 72 bp TGTCCTTTGAAGGATTATTTCAACCCTTTGAAGCATTaGAGGCATGCTTTGGTAAGTCATGCAGGGTTGGTT +
Preference number: 4 (lower is better)
Translates to: CPLKDYFNPLKH*RHALVSHAGLV
Trigger: AACCAACCCTGCATGACTTACCAAAGCATGCCTCAAATGCTTCAAAGGGTTGAAATAATCCTTCAAAGGACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAAATAAAATCCAGCATCTaGGCCACAGCCTCTTGGTCC +
Preference number: 4 (lower is better)
Translates to: PTFTLYNVGHSTCFLIDKIKSSI*ATASWS
Trigger: GGACCAAGAGGCTGTGGCTCAGATGCTGGATTTTAT...TTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAAAAGAGGTGTCCAGTGTaGTCACGTTCTGCATATCCC +
Preference number: 4 (lower is better)
Translates to: PTFTLYNVGHSTCFLIDKKRCPV*SRSAYP
Trigger: GGGATATGCAGAACGTGATCACACTGGACACCTCTT...TTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CACTATGTCATAGACAGAAGATCCACACTTAGATATCGAAGACATAAAAGTGTTAGCAGTAGAGCAGGATaGCAGAGGAGTGGATCTTCT +
Preference number: 4 (lower is better)
Translates to: HYVIDRRSTLRYRRHKSVSSRAG*QRSGSS
Trigger: AGAAGATCCACTCCTCTGTCATCCTGCTCTACTGCT...AACACTTTTATGTCTTCGATATCTAAGTGTGGATCTTCTGTCTATGACATAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGGTAGAGGTCATAGGTaGACTTTACAGTTCTGGACA +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIGRGHR*TLQFWT
Trigger: TGTCCAGAACTGTAAAGTTCACCTATGACCTCTACC...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp ACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACACCTACGCCCCTCTGGTTaGATTTGGTCATGTACTGGT +
Preference number: 4 (lower is better)
Translates to: TFTLYNVGHSTCFLIDKHLRPSG*IWSCTG
Trigger: ACCAGTACATGACCAAATTCAACCAGAGGGGCGTAG...GTGTTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp CCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACAGAAGGGGAAACAGTaGCATTACTCCTGGAGACCA +
Preference number: 4 (lower is better)
Translates to: PTFTLYNVGHSTCFLIDKQKGKQ*HYSWRP
Trigger: TGGTCTCCAGGAGTAATGGCACTGTTTCCCCTTCTG...TTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGTTGGCTGTGTAACTTaGAAGGAAGATGACGGCAAA +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIVGCVT*KEDDGK
Trigger: TTTGCCGTCATCTTCCTTGCAAGTTACACAGCCAAC...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CTTATTGTCTGGGTCAGACTTACATGCATACCATATTGCTTATTCTGTATTAGATGGCTTGCTGCTGGATaGAAGCTCCAAACTGGAAGA +
Preference number: 4 (lower is better)
Translates to: LIVWVRLTCIPYCLFCIRWLAAG*KLQTGR
Trigger: TCTTCCAGTTTGGAGCTTCCATCCAGCAGCAAGCCA...TCTAATACAGAATAAGCAATATGGTATGCATGTAAGTCTGACCCAGACAATAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATTCCCGGAGACCAAACTaGGGACAATCCAGAAGAAAT +
Preference number: 4 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDSRRPN*GQSRRN
Trigger: ATTTCTTCTGGATTGTCCCCAGTTTGGTCTCCGGGA...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp ATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTACATTGACCATAAATTaGTGCAGAGTGTGTAGCGGG +
Preference number: 4 (lower is better)
Translates to: IGHPTFTLYNVGHSTCFLTLTIN*CRVCSG
Trigger: CCCGCTACACACTCTGCACCAATTTATGGTCAATGT...AAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATGAGGTGGTTGTCATCTaGCTCACAGTCAGAAAAGGA +
Preference number: 4 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDEVVVI*LTVRKG
Trigger: TCCTTTTCTGACTGTGAGCCAGATGACAACCACCTC...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CACTATGTCATAGACAGAAGATCCACACTTAGATATCGAAGACATAAAAGTGTTGTAAAAGAAGGCCCATaGGGAGCTTTCCCTTTGGCT +
Preference number: 4 (lower is better)
Translates to: HYVIDRRSTLRYRRHKSVVKEGP*GAFPLA
Trigger: AGCCAAAGGGAAAGCTCCCCATGGGCCTTCTTTTAC...AACACTTTTATGTCTTCGATATCTAAGTGTGGATCTTCTGTCTATGACATAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp ACTTCTTCTAGATTACACATGGCTGCTGGCACATGTCACCACATTAACGACTCTAGTCAGATTGAAGTCTaGAGACTTCTTCTTTTCTTC +
Preference number: 4 (lower is better)
Translates to: TSSRLHMAAGTCHHINDSSQIEV*RLLLFF
Trigger: GAAGAAAAGAAGAAGTCTCCAGACTTCAATCTGACT...AGAGTCGTTAATGTGGTGACATGTGCCAGCAGCCATGTGTAATCTAGAAGAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTGCGAGGAGTTCATGTTaGACATGTTGGAGATGTTTT +
Preference number: 4 (lower is better)
Translates to: VLLDIQRLPSIMLAILHVARSSC*TCWRCF
Trigger: AAAACATCTCCAACATGTCCAACATGAACTCCTCGC...AACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTATCCTTGTGCCTGTTaGCCACAAATGTTTGCAGTT +
Preference number: 4 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSYPCAC*PQMFAV
Trigger: AACTGCAAACATTTGTGGCCAACAGGCACAAGGATA...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAAGGACTCTTTAGGGAGTaGGTCCTATTCTCTGCAGTC +
Preference number: 4 (lower is better)
Translates to: PTFTLYNVGHSTCFLIDKGLFRE*VLFSAV
Trigger: GACTGCAGAGAATAGGACCCACTCCCTAAAGAGTCC...TTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAATGGGCTACCTCTTCTaGAAGATACCTAGGACTCTT +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIMGYLF*KIPRTL
Trigger: AAGAGTCCTAGGTATCTTCCAGAAGAGGTAGCCCAT...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCAGAAATGTCAGAATaGGCTACCTCTTCTGGAAGA +
Preference number: 4 (lower is better)
Translates to: VLLDIQRLPSIMLAILHVSEMSE*ATSSGR
Trigger: TCTTCCAGAAGAGGTAGCCCATTCTGACATTTCTGA...AACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGTTCTTATTATTATCTaGCTCCCTGTGGCATGTGGC +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIVLIII*LPVACG
Trigger: GCCACATGCCACAGGGAGCCAGATAATAATAAGAAC...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CTTATTGTCTGGGTCAGACTTACATGCATACCATATTGCTTATTCTGTATTAGATGTGGAGGATCTAAGTaGAAGCTGGGCTCCTTCTCA +
Preference number: 4 (lower is better)
Translates to: LIVWVRLTCIPYCLFCIRCGGSK*KLGSFS
Trigger: TGAGAAGGAGCCCAGCTTCCACTTAGATCCTCCACA...TCTAATACAGAATAAGCAATATGGTATGCATGTAAGTCTGACCCAGACAATAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATTATACTGGTCATTGTTaGGAAGCCCATCTTCATTGT +
Preference number: 4 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHYTGHC*EAHLHC
Trigger: ACAATGAAGATGGGCTTCCCAACAATGACCAGTATA...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTAATCAGAGGTATGGTCTaGCAAGAGAGATTTGCTCCT +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLIRGMV*QERFAP
Trigger: AGGAGCAAATCTCTCTTGCCAGACCATACCTCTGAT...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATCTGAGACTATCCTTGTaGCTGTTGGCCACAAATGTT +
Preference number: 4 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDLRLSL*LLATNV
Trigger: AACATTTGTGGCCAACAGGCACAAGGATAGTCTCAG...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp CCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAAGTGTGGAGTCCCCCTTaGGGAAATTCTCATTGTGAT +
Preference number: 4 (lower is better)
Translates to: PTFTLYNVGHSTCFLIDKVWSPP*GNSHCD
Trigger: ATCACAATGAGAATTTCCGCAAGGGGGACTCCACAC...TTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp AACGGCCACTATGTCATAGACAGAAGATCCACACTTAGATATCGAAGACATAAAACACACGTCTATTGCTaGAGGAATTTAAAACCCTGG +
Preference number: 4 (lower is better)
Translates to: NGHYVIDRRSTLRYRRHKTHVYC*RNLKPW
Trigger: CCAGGGTTTTAAATTCCTGCAGCAATAGACGTGTGT...TTTATGTCTTCGATATCTAAGTGTGGATCTTCTGTCTATGACATAGTGGCCGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp GCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCTGTACACACGTCTATTaGTGCAGGAATTTAAAACCC +
Preference number: 4 (lower is better)
Translates to: AIGHPTFTLYNVGHSTCFCTHVY*CRNLKP
Trigger: GGGTTTTAAATTCCTGCAGCAATAGACGTGTGTACA...GAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATATTTCTGTACTTCCATTaGGTACTGTCCCAAATCGGA +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIFLYFH*VLSQIG
Trigger: TCCGATTTGGGACAGTACCCAATGGAAGTACAGAAA...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACCTTCTCACCATCGATaGTGTAGATCTTATCCCTGG +
Preference number: 4 (lower is better)
Translates to: PTFTLYNVGHSTCFLIDKPSHHR*CRSYPW
Trigger: CCAGGGATAAGATCTACACCATCGATGGTGAGAAGG...TTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CTTATTGTCTGGGTCAGACTTACATGCATACCATATTGCTTATTCTGTATTAGAAGCTTCTGCAATGCGTaGAGTTCTGCCGATATCGAT +
Preference number: 4 (lower is better)
Translates to: LIVWVRLTCIPYCLFCIRSFCNA*SSADID
Trigger: ATCGATATCGGCAGAACTCCACGCATTGCAGAAGCT...TCTAATACAGAATAAGCAATATGGTATGCATGTAAGTCTGACCCAGACAATAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp ATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTGGATTATCAGAGGTATaGTCTGGCAAGAGAGATTTG +
Preference number: 4 (lower is better)
Translates to: IGHPTFTLYNVGHSTCFLGLSEV*SGKRDL
Trigger: CAAATCTCTCTTGCCAGACCATACCTCTGATAATCC...AAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
3UTR CAA 72 bp CCAATCCTTTGTCCTTTGAAGGATTATTTCAACCCTTaGAAGCATTTGAGGCATGCTTTGGTAAGTCATGCA +
Preference number: 4 (lower is better)
Translates to: PILCPLKDYFNP*KHLRHALVSHA
Trigger: TGCATGACTTACCAAAGCATGCCTCAAATGCTTCAAAGGGTTGAAATAATCCTTCAAAGGACAAAGGATTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTGTATTTAGAGGCCATTaGCCTTTTGAAGTTATCCTT +
Preference number: 4 (lower is better)
Translates to: VLLDIQRLPSIMLAILHVVFRGH*PFEVIL
Trigger: AAGGATAACTTCAAAAGGTCAATGGCCTCTAAATAC...AACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GCAACTGTATTCACAGAAGTGCATTCAATCATCTCTGATCTGTATCAAGCTGACGTATTTAGAGGCCATTaGCCTTTTGAAGTTATCCTT +
Preference number: 4 (lower is better)
Translates to: ATVFTEVHSIISDLYQADVFRGH*PFEVIL
Trigger: AAGGATAACTTCAAAAGGTCAATGGCCTCTAAATAC...GTCAGCTTGATACAGATCAGAGATGATTGAATGCACTTCTGTGAATACAGTTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp GCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCAGACTATGTTTTCAATaGACTGTGGAGGATCTAAGT +
Preference number: 4 (lower is better)
Translates to: AIGHPTFTLYNVGHSTCFRLCFQ*TVEDLS
Trigger: ACTTAGATCCTCCACAGTTCATTGAAAACATAGTCT...GAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATATTCTTTTCTTCAATGTaGACTCCATGGATGCAACTG +
Preference number: 4 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIFFSSM*TPWMQL
Trigger: CAGTTGCATCCATGGAGTGCACATTGAAGAAAAGAA...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp CCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAAGAAGCTTTAGCATGTTaGTCTGTGACCCAGTCAGAT +
Preference number: 4 (lower is better)
Translates to: PTFTLYNVGHSTCFLIDKEALAC*SVTQSD
Trigger: ATCTGACTGGGTCACAGAGCAACATGCTAAAGCTTC...TTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp ATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTTGTACACACGTCTATTaGTGCAGGAATTTAAAACCC +
Preference number: 4 (lower is better)
Translates to: IGHPTFTLYNVGHSTCFLCTHVY*CRNLKP
Trigger: GGGTTTTAAATTCCTGCAGCAATAGACGTGTGTACA...AAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATGCGAGGAGTTCATGTTaGACATGTTGGAGATGTTTT +
Preference number: 4 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDARSSC*TCWRCF
Trigger: AAAACATCTCCAACATGTCCAACATGAACTCCTCGC...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAAATCAGAGGTATGGTCTaGCAAGAGAGATTTGCTCCT +
Preference number: 4 (lower is better)
Translates to: PTFTLYNVGHSTCFLIDKIRGMV*QERFAP
Trigger: AGGAGCAAATCTCTCTTGCCAGACCATACCTCTGAT...TTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
3UTR CAA 72 bp ATCCCTAGCTCTAGTAACCTCTATGTTATGAGGCTTTaGACCATCAGCTTGACAATACCAAGAGAATTATTC +
Preference number: 4 (lower is better)
Translates to: IPSSSNLYVMRL*TISLTIPRELF
Trigger: GAATAATTCTCTTGGTATTGTCAAGCTGATGGTCAAAAGCCTCATAACATAGAGGTTACTAGAGCTAGGGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATGTATCCAACAGGACTaGAGTATTCAAAAACGAAGA +
Preference number: 4 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLCIQQD*SIQKRR
Trigger: TCTTCGTTTTTGAATACTTCAGTCCTGTTGGATACA...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp CATGTATTCATTTGTTTTTGGTTAAGGATTCACCTATCTGGTATGTGCTGTGCTTTCTTTTCTTCAATGTaGACTCCATGGATGCAACTG +
Preference number: 4 (lower is better)
Translates to: HVFICFWLRIHLSGMCCAFFSSM*TPWMQL
Trigger: CAGTTGCATCCATGGAGTGCACATTGAAGAAAAGAA...AGCACAGCACATACCAGATAGGTGAATCCTTAACCAAAAACAAATGAATACATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR GCA 90 bp ACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACACACACACGTCTATTGCTaGAGGAATTTAAAACCCTGG +
Preference number: 4 (lower is better)
Translates to: TFTLYNVGHSTCFLIDKHTHVYC*RNLKPW
Trigger: CCAGGGTTTTAAATTCCTGCAGCAATAGACGTGTGT...GTGTTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CACTATGTCATAGACAGAAGATCCACACTTAGATATCGAAGACATAAAAGTGTTAGAATTTCTCCAACATaGAAGATGCGGCAGTGGTTA +
Preference number: 4 (lower is better)
Translates to: HYVIDRRSTLRYRRHKSVRISPT*KMRQWL
Trigger: TAACCACTGCCGCATCTTCCATGTTGGAGAAATTCT...AACACTTTTATGTCTTCGATATCTAAGTGTGGATCTTCTGTCTATGACATAGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAAATAAGTGAGCCTCTTTaGATGAAGTCAGCAGCTCTT +
Preference number: 4 (lower is better)
Translates to: PTFTLYNVGHSTCFLIDKISEPL*MKSAAL
Trigger: AAGAGCTGCTGACTTCATCCAAAGAGGCTCACTTAT...TTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CACTATGTCATAGACAGAAGATCCACACTTAGATATCGAAGACATAAAAGTGTTTATCCTTGTGCCTGTTaGCCACAAATGTTTGCAGTT +
Preference number: 4 (lower is better)
Translates to: HYVIDRRSTLRYRRHKSVYPCAC*PQMFAV
Trigger: AACTGCAAACATTTGTGGCCAACAGGCACAAGGATA...AACACTTTTATGTCTTCGATATCTAAGTGTGGATCTTCTGTCTATGACATAGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp ACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACACTCAGAAATGTCAGAATaGGCTACCTCTTCTGGAAGA +
Preference number: 4 (lower is better)
Translates to: TFTLYNVGHSTCFLIDKHSEMSE*ATSSGR
Trigger: TCTTCCAGAAGAGGTAGCCCATTCTGACATTTCTGA...GTGTTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp GTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTTATCCTTGGTCTTGTaGTTCTTATTATTATCTGGC +
Preference number: 4 (lower is better)
Translates to: VLLDIQRLPSIMLAILHVLSLVL*FLLLSG
Trigger: GCCAGATAATAATAAGAACCACAAGACCAAGGATAA...AACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp ACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACACGGATTATCAGAGGTATaGTCTGGCAAGAGAGATTTG +
Preference number: 4 (lower is better)
Translates to: TFTLYNVGHSTCFLIDKHGLSEV*SGKRDL
Trigger: CAAATCTCTCTTGCCAGACCATACCTCTGATAATCC...GTGTTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
3UTR CAA 72 bp TCTTATTACAGTGCAGATGCATTCTTAACTGTCTTATaGTCTGGGTCAGACTTACATGCATACCATATTGCT +
Preference number: 4 (lower is better)
Translates to: SYYSADAFLTVL*SGSDLHAYHIA
Trigger: AGCAATATGGTATGCATGTAAGTCTGACCCAGACAATAAGACAGTTAAGAATGCATCTGCACTGTAATAAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACAAATTTCCCTTGTCTaGAACCATGTCCACAATAAG +
Preference number: 4 (lower is better)
Translates to: PTFTLYNVGHSTCFLIDKQISLV*NHVHNK
Trigger: CTTATTGTGGACATGGTTTCAGACAAGGGAAATTTG...TTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp ACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACACTGTATCCAACAGGACTaGAGTATTCAAAAACGAAGA +
Preference number: 4 (lower is better)
Translates to: TFTLYNVGHSTCFLIDKHCIQQD*SIQKRR
Trigger: TCTTCGTTTTTGAATACTTCAGTCCTGTTGGATACA...GTGTTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR TCA 90 bp CACTATGTCATAGACAGAAGATCCACACTTAGATATCGAAGACATAAAAGTGTTAGACTATGTTTTCAATaGACTGTGGAGGATCTAAGT +
Preference number: 4 (lower is better)
Translates to: HYVIDRRSTLRYRRHKSVRLCFQ*TVEDLS
Trigger: ACTTAGATCCTCCACAGTTCATTGAAAACATAGTCT...AACACTTTTATGTCTTCGATATCTAAGTGTGGATCTTCTGTCTATGACATAGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CCA 90 bp CCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAAAGTCAGATTGAAGTCTaGAGACTTCTTCTTTTCTTC +
Preference number: 4 (lower is better)
Translates to: PTFTLYNVGHSTCFLIDKSQIEV*RLLLFF
Trigger: GAAGAAAAGAAGAAGTCTCCAGACTTCAATCTGACT...TTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
3UTR CAA 72 bp CTTTTTCTCTTACATCACAGTCTATTTTCCAATCCTTaGTCCTTTGAAGGATTATTTCAACCCTTTGAAGCA +
Preference number: 4 (lower is better)
Translates to: LFLLHHSLFSNP*SFEGLFQPFEA
Trigger: TGCTTCAAAGGGTTGAAATAATCCTTCAAAGGACAAAGGATTGGAAAATAGACTGTGATGTAAGAGAAAAAG
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS CCA 90 bp TGTCACGTCGTGGCTGTGACCCAGCAGCACCGCAATGTTCAGCGCTaGAGTACCCTTCTCCGCCGCCGCGTTCTGCGCCGGACCGTGCCA +
Preference number: 5 (lower is better)
Translates to: CHVVAVTQQHRNVQR*STLLRRRVLRRTVP
Trigger: TGGCACGGTCCGGCGCAGAACGCGGCGGCGGAGAAGGGTACTCCAGCGCTGAACATTGCGGTGCTGCTGGGTCACAGCCACGACGTGACA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS GCA 90 bp ACCGCAATGTTCAGCGCTGGAGTACCCTTCTCCGCCGCCGCGTTCTaGGCCGGACCGTGCCAGACCAGAAGGGCCGGCAATACCAGCAAG +
Preference number: 5 (lower is better)
Translates to: TAMFSAGVPFSAAAF*AGPCQTRRAGNTSK
Trigger: CTTGCTGGTATTGCCGGCCCTTCTGGTCTGGCACGGTCCGGCGCAGAACGCGGCGGCGGAGAAGGGTACTCCAGCGCTGAACATTGCGGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS TCA 90 bp GGGCCCCACAGATTTCGAAGTTCGCGTTCTGTCACGTCGTGGCTGTaGCCCAGCAGCACCGCAATGTTCAGCGCTGGAGTACCCTTCTCC +
Preference number: 5 (lower is better)
Translates to: GPHRFRSSRSVTSWL*PSSTAMFSAGVPFS
Trigger: GGAGAAGGGTACTCCAGCGCTGAACATTGCGGTGCTGCTGGGTCACAGCCACGACGTGACAGAACGCGAACTTCGAAATCTGTGGGGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS GCA 90 bp ATCAATAACGCCACCACGTTCACATCCAGGGGCAAGCCGGTTGCCTaGTCCGGGCCCCACAGATTTCGAAGTTCGCGTTCTGTCACGTCG +
Preference number: 5 (lower is better)
Translates to: INNATTFTSRGKPVA*SGPHRFRSSRSVTS
Trigger: CGACGTGACAGAACGCGAACTTCGAAATCTGTGGGGCCCGGAGCAGGCAACCGGCTTGCCCCTGGATGTGAACGTGGTGGCGTTATTGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 90 bp GTAGCGGGGTCTCCGGCTTCTCTGTCTGCCCGTAGCAGCTGGCCTTaGCCTCGGGAATGTAGGAGAATTTCTCCAACATGGAAGATGCGG +
Preference number: 5 (lower is better)
Translates to: VAGSPASLSARSSWP*PRECRRISPTWKMR
Trigger: CCGCATCTTCCATGTTGGAGAAATTCTCCTACATTCCCGAGGCCAAGGCCAGCTGCTACGGGCAGACAGAGAAGCCGGAGACCCCGCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 90 bp GAGTGTGTAGCGGGGTCTCCGGCTTCTCTGTCTGCCCGTAGCAGCTaGCCTTGGCCTCGGGAATGTAGGAGAATTTCTCCAACATGGAAG +
Preference number: 5 (lower is better)
Translates to: ECVAGSPASLSARSS*PWPRECRRISPTWK
Trigger: CTTCCATGTTGGAGAAATTCTCCTACATTCCCGAGGCCAAGGCCAGCTGCTACGGGCAGACAGAGAAGCCGGAGACCCCGCTACACACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 90 bp GGCCTGAGTAGGTGGGCAGGTTTGAGAGGCAGCTTCTGCAATGCGTaGAGTTCTGCCGATATCGATCACTGCCCTCACTATGTGGGGAAC +
Preference number: 5 (lower is better)
Translates to: GLSRWAGLRGSFCNA*SSADIDHCPHYVGN
Trigger: GTTCCCCACATAGTGAGGGCAGTGATCGATATCGGCAGAACTCCACGCATTGCAGAAGCTGCCTCTCAAACCTGCCCACCTACTCAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CAGGGCCTCCTGTCCAGTCCTCATCACCACCTTAGGTGCCATTTGCCACTCCCTTCCACTGTGTTGGGGTaGGACTCATTGAGAGTGAGA +
Preference number: 5 (lower is better)
Translates to: QGLLSSPHHHLRCHLPLPSTVLG*DSLRVR
Trigger: TCTCACTCTCAATGAGTCCAACCCCAACACAGTGGA...AGGGAGTGGCAAATGGCACCTAAGGTGGTGATGAGGACTGGACAGGAGGCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS CCA 90 bp GTGAAGGACAAGTCCTTGCCATCCCAAGTCACATTGACCATAAATTaGTGCAGAGTGTGTAGCGGGGTCTCCGGCTTCTCTGTCTGCCCG +
Preference number: 5 (lower is better)
Translates to: VKDKSLPSQVTLTIN*CRVCSGVSGFSVCP
Trigger: CGGGCAGACAGAGAAGCCGGAGACCCCGCTACACACTCTGCACCAATTTATGGTCAATGTGACTTGGGATGGCAAGGACTTGTCCTTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 90 bp AAACTTCCGACAGGGTACCGTGTTCCTGACGCAGGTCTCAGTCAGTaGGTCTATGTCTTCTACGATGACGAAGGGGGCTTCCTCCAAGGT +
Preference number: 5 (lower is better)
Translates to: KLPTGYRVPDAGLSQ*VYVFYDDEGGFLQG
Trigger: ACCTTGGAGGAAGCCCCCTTCGTCATCGTAGAAGACATAGACCCACTGACTGAGACCTGCGTCAGGAACACGGTACCCTGTCGGAAGTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CAGGGCCTCCTGTCCAGTCCTCATCACCACCTTAGGTGCCATTTGCCACTCCCTTGTGACCCAGTCAGATaGAAGTCTGGAGACTTCTTC +
Preference number: 5 (lower is better)
Translates to: QGLLSSPHHHLRCHLPLPCDPVR*KSGDFF
Trigger: GAAGAAGTCTCCAGACTTCAATCTGACTGGGTCACA...AGGGAGTGGCAAATGGCACCTAAGGTGGTGATGAGGACTGGACAGGAGGCCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CAGGGCCTCCTGTCCAGTCCTCATCACCACCTTAGGTGCCATTTGCCACTCCCTAGAAGCTTTAGCATGTaGCTCTGTGACCCAGTCAGA +
Preference number: 5 (lower is better)
Translates to: QGLLSSPHHHLRCHLPLPRSFSM*LCDPVR
Trigger: TCTGACTGGGTCACAGAGCAACATGCTAAAGCTTCT...AGGGAGTGGCAAATGGCACCTAAGGTGGTGATGAGGACTGGACAGGAGGCCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS TCA 90 bp TCAGCTGGACCTGTGTCTTGGCGTCCTCAAAAGAGGTGTCCAGTGTaGTCACGTTCTGCATATCCCAGCCCACAAAGCTGTTGTCCACTG +
Preference number: 5 (lower is better)
Translates to: SAGPVSWRPQKRCPV*SRSAYPSPQSCCPL
Trigger: CAGTGGACAACAGCTTTGTGGGCTGGGATATGCAGAACGTGATCACACTGGACACCTCTTTTGAGGACGCCAAGACACAGGTCCAGCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 90 bp AGCAGCTGGCCTTGGCCTCGGGAATGTAGGAGAATTTCTCCAACATaGAAGATGCGGCAGTGGTTAAGATCCCAAGACCGTCTCTCACTC +
Preference number: 5 (lower is better)
Translates to: SSWPWPRECRRISPT*KMRQWLRSQDRLSL
Trigger: GAGTGAGAGACGGTCTTGGGATCTTAACCACTGCCGCATCTTCCATGTTGGAGAAATTCTCCTACATTCCCGAGGCCAAGGCCAGCTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GGTACCAAGCTAGGAATCAGAACTGAGTCTTGGGCTCCAGCCCCAACTCCAATGAGCCTTTCCCTGTCCTaGAGGCTTATGCTACGAGAG +
Preference number: 5 (lower is better)
Translates to: GTKLGIRTESWAPAPTPMSLSLS*RLMLRE
Trigger: CTCTCGTAGCATAAGCCTCAAGGACAGGGAAAGGCT...CATTGGAGTTGGGGCTGGAGCCCAAGACTCAGTTCTGATTCCTAGCTTGGTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS CCA 90 bp TCCCTGTGGCATGTGGCCCGGCTTGAGGTTTCAGAAATGTCAGAATaGGCTACCTCTTCTGGAAGATACCTAGGACTCTTTAGGGAGTGG +
Preference number: 5 (lower is better)
Translates to: SLWHVARLEVSEMSE*ATSSGRYLGLFREW
Trigger: CCACTCCCTAAAGAGTCCTAGGTATCTTCCAGAAGAGGTAGCCCATTCTGACATTTCTGAAACCTCAAGCCGGGCCACATGCCACAGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp TGCATAGTTCAGCATCCCTGGGAGTCTCCTCGCCTCTTGCAGAAACACATAGTCAAGTCAGCAGCTCTTTaGGGTGAGTCCATTCGCGAG +
Preference number: 5 (lower is better)
Translates to: CIVQHPWESPRLLQKHIVKSAAL*GESIRE
Trigger: CTCGCGAATGGACTCACCCAAAAGAGCTGCTGACTT...GACTATGTGTTTCTGCAAGAGGCGAGGAGACTCCCAGGGATGCTGAACTATGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CAGGGCCTCCTGTCCAGTCCTCATCACCACCTTAGGTGCCATTTGCCACTCCCTTTATACTGGTCATTGTaGGGAAGCCCATCTTCATTG +
Preference number: 5 (lower is better)
Translates to: QGLLSSPHHHLRCHLPLPLYWSL*GSPSSL
Trigger: CAATGAAGATGGGCTTCCCAACAATGACCAGTATAA...AGGGAGTGGCAAATGGCACCTAAGGTGGTGATGAGGACTGGACAGGAGGCCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS CCA 90 bp CCTCGGGAATGTAGGAGAATTTCTCCAACATGGAAGATGCGGCAGTaGTTAAGATCCCAAGACCGTCTCTCACTCTTGCCTCCAGACTGT +
Preference number: 5 (lower is better)
Translates to: PRECRRISPTWKMRQ*LRSQDRLSLLPPDC
Trigger: ACAGTCTGGAGGCAAGAGTGAGAGACGGTCTTGGGATCTTAACCACTGCCGCATCTTCCATGTTGGAGAAATTCTCCTACATTCCCGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp ACTTCTCATTGGTTTCTGTTGGTGCTGGGCAAGAGGTGCACCTCCAAGAAGGTGTTGGGGTTGGACTCATaGAGAGTGAGAGGATGCTGT +
Preference number: 5 (lower is better)
Translates to: TSHWFLLVLGKRCTSKKVLGLDS*RVRGCC
Trigger: ACAGCATCCTCTCACTCTCAATGAGTCCAACCCCAA...CACCTTCTTGGAGGTGCACCTCTTGCCCAGCACCAACAGAAACCAATGAGAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS TCA 90 bp CCCAAGATGGGGATGAAAGTCTGTGAGGAGATAAAATCCAGCATCTaGGCCACAGCCTCTTGGTCCGTATCATCTCCAAACACCAAGCCA +
Preference number: 5 (lower is better)
Translates to: PKMGMKVCEEIKSSI*ATASWSVSSPNTKP
Trigger: TGGCTTGGTGTTTGGAGATGATACGGACCAAGAGGCTGTGGCTCAGATGCTGGATTTTATCTCCTCACAGACTTTCATCCCCATCTTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS TCA 90 bp TCTCACTCTTGCCTCCAGACTGTAGTCCCAGTCGTCGTAAGAGACTaGAATGAGACCCGATGGAAACTCTTTGGGGATGAGCTCTGTGTT +
Preference number: 5 (lower is better)
Translates to: SHSCLQTVVPVVVRD*NETRWKLFGDELCV
Trigger: AACACAGAGCTCATCCCCAAAGAGTTTCCATCGGGTCTCATTTCAGTCTCTTACGACGACTGGGACTACAGTCTGGAGGCAAGAGTGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS GCA 90 bp TGTGTCTTGGCGTCCTCAAAAGAGGTGTCCAGTGTGATCACGTTCTaGATATCCCAGCCCACAAAGCTGTTGTCCACTGTTGTCTTGATG +
Preference number: 5 (lower is better)
Translates to: CVLASSKEVSSVITF*ISQPTKLLSTVVLM
Trigger: CATCAAGACAACAGTGGACAACAGCTTTGTGGGCTGGGATATGCAGAACGTGATCACACTGGACACCTCTTTTGAGGACGCCAAGACACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS GCA 90 bp TGTGGAGGAAAGGATTATCAGAGGTATGGTCTGGCAAGAGAGATTTaGTCCTCTTGCTGTCCTCCAGACCTTGGGGGAAAAGGGAGCTTT +
Preference number: 5 (lower is better)
Translates to: CGGKDYQRYGLAREI*SSCCPPDLGGKGSF
Trigger: AAAGCTCCCTTTTCCCCCAAGGTCTGGAGGACAGCAAGAGGAGCAAATCTCTCTTGCCAGACCATACCTCTGATAATCCTTTCCTCCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 90 bp ATCTTCAGCATGACCGTGGCTTGCTGCTGGATGGAAGCTCCAAACTaGAAGAACGTGGATGTCGGATCCTTGTCAGCCATGATCATAGAT +
Preference number: 5 (lower is better)
Translates to: IFSMTVACCWMEAPN*KNVDVGSLSAMIID
Trigger: ATCTATGATCATGGCTGACAAGGATCCGACATCCACGTTCTTCCAGTTTGGAGCTTCCATCCAGCAGCAAGCCACGGTCATGCTGAAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 90 bp GGAAGCTGGGCTCCTTCTCACCATCGATGGTGTAGATCTTATCCCTaGGAGAACTTGCTTTGGTTTTCACGTAGGTACGTTCAACCTCAC +
Preference number: 5 (lower is better)
Translates to: GSWAPSHHRWCRSYP*ENLLWFSRRYVQPH
Trigger: GTGAGGTTGAACGTACCTACGTGAAAACCAAAGCAAGTTCTCCCAGGGATAAGATCTACACCATCGATGGTGAGAAGGAGCCCAGCTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GGGGCACACAGATGGCATTGTACTTCTTCTAGATTACACATGGCTGCTGGCACATCGATGCAGAACCCCTaGCAGCACTTCTTCACATTC +
Preference number: 5 (lower is better)
Translates to: GAHRWHCTSSRLHMAAGTSMQNP*QHFFTF
Trigger: GAATGTGAAGAAGTGCTGCAAGGGGTTCTGCATCGA...TGTGCCAGCAGCCATGTGTAATCTAGAAGAAGTACAATGCCATCTGTGTGCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp TTCACCTATCTGGTATGTGCTGTGCTCAGCACATACCTCATAAGATTCCTTGAGACGGGCACAGAATTGTaGAAGACCAGGCCCCAGAGG +
Preference number: 5 (lower is better)
Translates to: FTYLVCAVLSTYLIRFLETGTEL*KTRPQR
Trigger: CCTCTGGGGCCTGGTCTTCAACAATTCTGTGCCCGT...CTCAAGGAATCTTATGAGGTATGTGCTGAGCACAGCACATACCAGATAGGTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp ACTTCTCATTGGTTTCTGTTGGTGCTGGGCAAGAGGTGCACCTCCAAGAAGGTGCTATCCTTGTGCCTGTaGGCCACAAATGTTTGCAGT +
Preference number: 5 (lower is better)
Translates to: TSHWFLLVLGKRCTSKKVLSLCL*ATNVCS
Trigger: ACTGCAAACATTTGTGGCCAACAGGCACAAGGATAG...CACCTTCTTGGAGGTGCACCTCTTGCCCAGCACCAACAGAAACCAATGAGAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS CCA 90 bp GTCCTATTCTCTGCAGTCTTCTCATCCCTCTGGGAGACTGGGTTCTaGTTTAGAGAATCCTGGCGTAGAGACTCCATGGATTTCTTCCAA +
Preference number: 5 (lower is better)
Translates to: VLFSAVFSSLWETGF*FRESWRRDSMDFFQ
Trigger: TTGGAAGAAATCCATGGAGTCTCTACGCCAGGATTCTCTAAACCAGAACCCAGTCTCCCAGAGGGATGAGAAGACTGCAGAGAATAGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 90 bp CCTTGGTCTTGTGGTTCTTATTATTATCTGGCTCCCTGTGGCATGTaGCCCGGCTTGAGGTTTCAGAAATGTCAGAATGGGCTACCTCTT +
Preference number: 5 (lower is better)
Translates to: PWSCGSYYYLAPCGM*PGLRFQKCQNGLPL
Trigger: AAGAGGTAGCCCATTCTGACATTTCTGAAACCTCAAGCCGGGCCACATGCCACAGGGAGCCAGATAATAATAAGAACCACAAGACCAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 90 bp ACTGTGGAGGATCTAAGTGGAAGCTGGGCTCCTTCTCACCATCGATaGTGTAGATCTTATCCCTGGGAGAACTTGCTTTGGTTTTCACGT +
Preference number: 5 (lower is better)
Translates to: TVEDLSGSWAPSHHR*CRSYPWENLLWFSR
Trigger: ACGTGAAAACCAAAGCAAGTTCTCCCAGGGATAAGATCTACACCATCGATGGTGAGAAGGAGCCCAGCTTCCACTTAGATCCTCCACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 90 bp CATTGTTGGGAAGCCCATCTTCATTGTGTAGTGGGTTCCTGTTCATaGGCAGTGTGGAGTCCCCCTTGCGGAAATTCTCATTGTGATCTT +
Preference number: 5 (lower is better)
Translates to: HCWEAHLHCVVGSCS*AVWSPPCGNSHCDL
Trigger: AAGATCACAATGAGAATTTCCGCAAGGGGGACTCCACACTGCCCATGAACAGGAACCCACTACACAATGAAGATGGGCTTCCCAACAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 90 bp GCAATGCGTGGAGTTCTGCCGATATCGATCACTGCCCTCACTATGTaGGGAACCCTTGTCTTTCAAGGTAAAGTGCTTGGCATAGAGTTT +
Preference number: 5 (lower is better)
Translates to: AMRGVLPISITALTM*GTLVFQGKVLGIEF
Trigger: AAACTCTATGCCAAGCACTTTACCTTGAAAGACAAGGGTTCCCCACATAGTGAGGGCAGTGATCGATATCGGCAGAACTCCACGCATTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 90 bp GAGGGACATCTCCCAATAACTAAGCGTTGGTCATCCCCGTACGTGTaGAGGAAAGGATTATCAGAGGTATGGTCTGGCAAGAGAGATTTG +
Preference number: 5 (lower is better)
Translates to: EGHLPITKRWSSPYV*RKGLSEVWSGKRDL
Trigger: CAAATCTCTCTTGCCAGACCATACCTCTGATAATCCTTTCCTCCACACGTACGGGGATGACCAACGCTTAGTTATTGGGAGATGTCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp AGCCTGGGGCACACAGATGGCATTGTACTTCTTCTAGATTACACATGGCTGCTGGTGGATGTCGGATCCTaGTCAGCCATGATCATAGAT +
Preference number: 5 (lower is better)
Translates to: SLGHTDGIVLLLDYTWLLVDVGS*SAMIID
Trigger: ATCTATGATCATGGCTGACAAGGATCCGACATCCAC...CAGCAGCCATGTGTAATCTAGAAGAAGTACAATGCCATCTGTGTGCCCCAGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp TGCATAGTTCAGCATCCCTGGGAGTCTCCTCGCCTCTTGCAGAAACACATAGTCAGCAATATGATGCTGTaGACCTCAAGGATGACCGAA +
Preference number: 5 (lower is better)
Translates to: CIVQHPWESPRLLQKHIVSNMML*TSRMTE
Trigger: TTCGGTCATCCTTGAGGTCAACAGCATCATATTGCT...GACTATGTGTTTCTGCAAGAGGCGAGGAGACTCCCAGGGATGCTGAACTATGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS TCA 90 bp GTGGTTCTTATTATTATCTGGCTCCCTGTGGCATGTGGCCCGGCTTaGGGTTTCAGAAATGTCAGAATGGGCTACCTCTTCTGGAAGATA +
Preference number: 5 (lower is better)
Translates to: VVLIIIWLPVACGPA*GFRNVRMGYLFWKI
Trigger: TATCTTCCAGAAGAGGTAGCCCATTCTGACATTTCTGAAACCTCAAGCCGGGCCACATGCCACAGGGAGCCAGATAATAATAAGAACCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 90 bp TCTCACCATCGATGGTGTAGATCTTATCCCTGGGAGAACTTGCTTTaGTTTTCACGTAGGTACGTTCAACCTCACTACAGTCCTTGGGGT +
Preference number: 5 (lower is better)
Translates to: SHHRWCRSYPWENLL*FSRRYVQPHYSPWG
Trigger: ACCCCAAGGACTGTAGTGAGGTTGAACGTACCTACGTGAAAACCAAAGCAAGTTCTCCCAGGGATAAGATCTACACCATCGATGGTGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTGACCGTCTCTCACTCTaGCCTCCAGACTGTAGTCCC +
Preference number: 5 (lower is better)
Translates to: VLLDIQRLPSIMLAILHVDRLSL*PPDCSP
Trigger: GGGACTACAGTCTGGAGGCAAGAGTGAGAGACGGTC...AACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp AGCCTGGGGCACACAGATGGCATTGTACTTCTTCTAGATTACACATGGCTGCTGTTACTGAGACTATCCTaGTGCCTGTTGGCCACAAAT +
Preference number: 5 (lower is better)
Translates to: SLGHTDGIVLLLDYTWLLLLRLS*CLLATN
Trigger: ATTTGTGGCCAACAGGCACAAGGATAGTCTCAGTAA...CAGCAGCCATGTGTAATCTAGAAGAAGTACAATGCCATCTGTGTGCCCCAGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GGGGCACACAGATGGCATTGTACTTCTTCTAGATTACACATGGCTGCTGGCACAAGACAGGCATCACACTaGAAAGGAGATCTCATGGTA +
Preference number: 5 (lower is better)
Translates to: GAHRWHCTSSRLHMAAGTRQASH*KGDLMV
Trigger: TACCATGAGATCTCCTTTCAAGTGTGATGCCTGTCT...TGTGCCAGCAGCCATGTGTAATCTAGAAGAAGTACAATGCCATCTGTGTGCCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp ACTTCTCATTGGTTTCTGTTGGTGCTGGGCAAGAGGTGCACCTCCAAGAAGGTGCGATTAATCTTTAGCTaGTTCTTCTGGAACTGGAGG +
Preference number: 5 (lower is better)
Translates to: TSHWFLLVLGKRCTSKKVRLIFS*FFWNWR
Trigger: CCTCCAGTTCCAGAAGAACAAGCTAAAGATTAATCG...CACCTTCTTGGAGGTGCACCTCTTGCCCAGCACCAACAGAAACCAATGAGAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGCTGTCCTCCAGACCTaGGGGGAAAAGGGAGCTTTT +
Preference number: 5 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHAVLQT*GEKGAF
Trigger: AAAAGCTCCCTTTTCCCCCAAGGTCTGGAGGACAGC...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS TCA 90 bp CTGAGCGGAGAAGCTTTAGCATGTTGCTCTGTGACCCAGTCAGATTaGAGTCTGGAGACTTCTTCTTTTCTTCAATGTGCACTCCATGGA +
Preference number: 5 (lower is better)
Translates to: LSGEALACCSVTQSD*SLETSSFLQCALHG
Trigger: TCCATGGAGTGCACATTGAAGAAAAGAAGAAGTCTCCAGACTTCAATCTGACTGGGTCACAGAGCAACATGCTAAAGCTTCTCCGCTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS TCA 90 bp AGGTATCTGGGAAGTCCACATTCTCAGGCAAGACTATGTTTTCAATaGACTGTGGAGGATCTAAGTGGAAGCTGGGCTCCTTCTCACCAT +
Preference number: 5 (lower is better)
Translates to: RYLGSPHSQARLCFQ*TVEDLSGSWAPSHH
Trigger: ATGGTGAGAAGGAGCCCAGCTTCCACTTAGATCCTCCACAGTTCATTGAAAACATAGTCTTGCCTGAGAATGTGGACTTCCCAGATACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS GCA 90 bp CTCCTTCTCACCATCGATGGTGTAGATCTTATCCCTGGGAGAACTTaGTTTGGTTTTCACGTAGGTACGTTCAACCTCACTACAGTCCTT +
Preference number: 5 (lower is better)
Translates to: LLLTIDGVDLIPGRT*FGFHVGTFNLTTVL
Trigger: AAGGACTGTAGTGAGGTTGAACGTACCTACGTGAAAACCAAAGCAAGTTCTCCCAGGGATAAGATCTACACCATCGATGGTGAGAAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 90 bp AAGTTATCCTTGGTCTTGTGGTTCTTATTATTATCTGGCTCCCTGTaGCATGTGGCCCGGCTTGAGGTTTCAGAAATGTCAGAATGGGCT +
Preference number: 5 (lower is better)
Translates to: KLSLVLWFLLLSGSL*HVARLEVSEMSEWA
Trigger: AGCCCATTCTGACATTTCTGAAACCTCAAGCCGGGCCACATGCCACAGGGAGCCAGATAATAATAAGAACCACAAGACCAAGGATAACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTAGACCGTCTCTCACTCTaGCCTCCAGACTGTAGTCCC +
Preference number: 5 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLDRLSL*PPDCSP
Trigger: GGGACTACAGTCTGGAGGCAAGAGTGAGAGACGGTC...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAACGGGCACAGAATTGTaGAAGACCAGGCCCCAGAGG +
Preference number: 5 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLITGTEL*KTRPQR
Trigger: CCTCTGGGGCCTGGTCTTCAACAATTCTGTGCCCGT...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTACCTCATTCTTCTCGTaGTGGCAGATGCCCGTAAGC +
Preference number: 5 (lower is better)
Translates to: GAIGHPTFTLYNVGHSTCTSFFS*WQMPVS
Trigger: GCTTACGGGCATCTGCCACAACGAGAAGAATGAGGT...ACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATACCTCATTCTTCTCGTaGTGGCAGATGCCCGTAAGC +
Preference number: 5 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHTSFFS*WQMPVS
Trigger: GCTTACGGGCATCTGCCACAACGAGAAGAATGAGGT...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCGCCACCTCCACTGTGTaGGGGTTGGACTCATTGAGA +
Preference number: 5 (lower is better)
Translates to: AIGHPTFTLYNVGHSTCFATSTV*GLDSLR
Trigger: TCTCAATGAGTCCAACCCCAACACAGTGGAGGTGGC...GAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCGCCACCTCCACTGTGTaGGGGTTGGACTCATTGAGA +
Preference number: 5 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSATSTV*GLDSLR
Trigger: TCTCAATGAGTCCAACCCCAACACAGTGGAGGTGGC...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp AGCCTGGGGCACACAGATGGCATTGTACTTCTTCTAGATTACACATGGCTGCTGATTCTCATTGTGATCTaGGTAGGTATCTGGGAAGTC +
Preference number: 5 (lower is better)
Translates to: SLGHTDGIVLLLDYTWLLILIVI*VGIWEV
Trigger: GACTTCCCAGATACCTACCAAGATCACAATGAGAAT...CAGCAGCCATGTGTAATCTAGAAGAAGTACAATGCCATCTGTGTGCCCCAGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GGGGCACACAGATGGCATTGTACTTCTTCTAGATTACACATGGCTGCTGGCACATCGTTGGTTGAATTGTaGATCTTGACAAACTTCCGA +
Preference number: 5 (lower is better)
Translates to: GAHRWHCTSSRLHMAAGTSLVEL*ILTNFR
Trigger: TCGGAAGTTTGTCAAGATCAACAATTCAACCAACGA...TGTGCCAGCAGCCATGTGTAATCTAGAAGAAGTACAATGCCATCTGTGTGCCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GTAGGCCTCCAACTCACAATATTGCCTGGGCATAACCTTGAACTCATAATCCTCTGGGGAGCTTTCCCTTaGGCTAAGTTTCTGTTGTAT +
Preference number: 5 (lower is better)
Translates to: VGLQLTILPGHNLELIILWGAFP*AKFLLY
Trigger: ATACAACAGAAACTTAGCCAAAGGGAAAGCTCCCCA...GAGGATTATGAGTTCAAGGTTATGCCCAGGCAATATTGTGAGTTGGAGGCCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp ACTTCTTCTAGATTACACATGGCTGCTGGCACATGTCACCACATTAACGACTCTCCCCTCTGGTTGAATTaGGTCATGTACTGGTGCATA +
Preference number: 5 (lower is better)
Translates to: TSSRLHMAAGTCHHINDSPLWLN*VMYWCI
Trigger: TATGCACCAGTACATGACCAAATTCAACCAGAGGGG...AGAGTCGTTAATGTGGTGACATGTGCCAGCAGCCATGTGTAATCTAGAAGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATTCTACGCCCCTCTGGTaGAATTTGGTCATGTACTGG +
Preference number: 5 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHSTPLW*NLVMYW
Trigger: CCAGTACATGACCAAATTCAACCAGAGGGGCGTAGA...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp ACTTCTTCTAGATTACACATGGCTGCTGGCACATGTCACCACATTAACGACTCTTATCCCTGGGAGAACTaGCTTTGGTTTTCACGTAGG +
Preference number: 5 (lower is better)
Translates to: TSSRLHMAAGTCHHINDSYPWEN*LWFSRR
Trigger: CCTACGTGAAAACCAAAGCAAGTTCTCCCAGGGATA...AGAGTCGTTAATGTGGTGACATGTGCCAGCAGCCATGTGTAATCTAGAAGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTAGCCTTTCCCTGTCCTaGAGGCTTATGCTACGAGAG +
Preference number: 5 (lower is better)
Translates to: VLLDIQRLPSIMLAILHVSLSLS*RLMLRE
Trigger: CTCTCGTAGCATAAGCCTCAAGGACAGGGAAAGGCT...AACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCTCTGGCAAGAGAGATTaGCTCCTCTTGCTGTCCTCC +
Preference number: 5 (lower is better)
Translates to: AIGHPTFTLYNVGHSTCFSGKRD*LLLLSS
Trigger: GGAGGACAGCAAGAGGAGCAAATCTCTCTTGCCAGA...GAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 90 bp GCATATAGGGGTAGTTGTTACGAATATTCCTTTCTGTACTTCCATTaGGTACTGTCCCAAATCGGAAAGGCGGAGAATAGTCATGAGGTC +
Preference number: 5 (lower is better)
Translates to: AYRGSCYEYSFLYFH*VLSQIGKAENSHEV
Trigger: GACCTCATGACTATTCTCCGCCTTTCCGATTTGGGACAGTACCCAATGGAAGTACAGAAAGGAATATTCGTAACAACTACCCCTATATGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATCGCGAGGAGTTCATGTaGGACATGTTGGAGATGTTT +
Preference number: 5 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHREEFM*DMLEMF
Trigger: AAACATCTCCAACATGTCCAACATGAACTCCTCGCG...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTCTATCCTTGTGCCTGTaGGCCACAAATGTTTGCAGT +
Preference number: 5 (lower is better)
Translates to: GAIGHPTFTLYNVGHSTCLSLCL*ATNVCS
Trigger: ACTGCAAACATTTGTGGCCAACAGGCACAAGGATAG...ACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCGGAAGCCCATCTTCATaGTGTAGTGGGTTCCTGTTC +
Preference number: 5 (lower is better)
Translates to: AIGHPTFTLYNVGHSTCFGSPSS*CSGFLF
Trigger: GAACAGGAACCCACTACACAATGAAGATGGGCTTCC...GAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp TTTGAGCTTTCCAAATCCATCAAATTTCCAAAGATGATTGCTCAGATGAGCCACTCTGGCAAGAGAGATTaGCTCCTCTTGCTGTCCTCC +
Preference number: 5 (lower is better)
Translates to: FELSKSIKFPKMIAQMSHSGKRD*LLLLSS
Trigger: GGAGGACAGCAAGAGGAGCAAATCTCTCTTGCCAGA...GTGGCTCATCTGAGCAATCATCTTTGGAAATTTGATGGATTTGGAAAGCTCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp ACTTCTTCTAGATTACACATGGCTGCTGGCACATGTCACCACATTAACGACTCTTTGTCCACTGTTGTCTaGATGAAGCTGATGAAGTCT +
Preference number: 5 (lower is better)
Translates to: TSSRLHMAAGTCHHINDSLSTVV*MKLMKS
Trigger: AGACTTCATCAGCTTCATCAAGACAACAGTGGACAA...AGAGTCGTTAATGTGGTGACATGTGCCAGCAGCCATGTGTAATCTAGAAGAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTACAGCCCACAAAGCTGTaGTCCACTGTTGTCTTGATG +
Preference number: 5 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLQPTKL*STVVLM
Trigger: CATCAAGACAACAGTGGACAACAGCTTTGTGGGCTG...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAGTCAGCAGCTCTTTaGGGTGAGTCCATTCGCGAG +
Preference number: 5 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDKSAAL*GESIRE
Trigger: CTCGCGAATGGACTCACCCAAAAGAGCTGCTGACTT...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GTAGGCCTCCAACTCACAATATTGCCTGGGCATAACCTTGAACTCATAATCCTCGTTGGCCACAAATGTTaGCAGTTCATTCATGTTTTC +
Preference number: 5 (lower is better)
Translates to: VGLQLTILPGHNLELIILVGHKC*QFIHVF
Trigger: GAAAACATGAATGAACTGCAAACATTTGTGGCCAAC...GAGGATTATGAGTTCAAGGTTATGCCCAGGCAATATTGTGAGTTGGAGGCCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATATTGGGGTTGGACTCATaGAGAGTGAGAGGATGCTGT +
Preference number: 5 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLILGLDS*RVRGCC
Trigger: ACAGCATCCTCTCACTCTCAATGAGTCCAACCCCAA...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CTTATTGTCTGGGTCAGACTTACATGCATACCATATTGCTTATTCTGTATTAGAGCTGTCCTCCAGACCTaGGGGGAAAAGGGAGCTTTT +
Preference number: 5 (lower is better)
Translates to: LIVWVRLTCIPYCLFCIRAVLQT*GEKGAF
Trigger: AAAAGCTCCCTTTTCCCCCAAGGTCTGGAGGACAGC...TCTAATACAGAATAAGCAATATGGTATGCATGTAAGTCTGACCCAGACAATAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GTAGGCCTCCAACTCACAATATTGCCTGGGCATAACCTTGAACTCATAATCCTCTTGTACACACGTCTATaGCTGCAGGAATTTAAAACC +
Preference number: 5 (lower is better)
Translates to: VGLQLTILPGHNLELIILLYTRL*LQEFKT
Trigger: GGTTTTAAATTCCTGCAGCAATAGACGTGTGTACAA...GAGGATTATGAGTTCAAGGTTATGCCCAGGCAATATTGTGAGTTGGAGGCCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGTGGATGTCGGATCCTaGTCAGCCATGATCATAGAT +
Preference number: 5 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIVDVGS*SAMIID
Trigger: ATCTATGATCATGGCTGACAAGGATCCGACATCCAC...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCCCATCCCAAGTCACATaGACCATAAATTGGTGCAGA +
Preference number: 5 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSPSQVT*TINWCR
Trigger: TCTGCACCAATTTATGGTCAATGTGACTTGGGATGG...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTCCATCCCAAGTCACATaGACCATAAATTGGTGCAGA +
Preference number: 5 (lower is better)
Translates to: VLLDIQRLPSIMLAILHVPSQVT*TINWCR
Trigger: TCTGCACCAATTTATGGTCAATGTGACTTGGGATGG...AACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCTGGGGAGCTTTCCCTTaGGCTAAGTTTCTGTTGTAT +
Preference number: 5 (lower is better)
Translates to: AIGHPTFTLYNVGHSTCFWGAFP*AKFLLY
Trigger: ATACAACAGAAACTTAGCCAAAGGGAAAGCTCCCCA...GAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp ATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTCTTTCTGTACTTCCATaGGGTACTGTCCCAAATCGG +
Preference number: 5 (lower is better)
Translates to: IGHPTFTLYNVGHSTCFLLSVLP*GTVPNR
Trigger: CCGATTTGGGACAGTACCCAATGGAAGTACAGAAAG...AAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATACCCCTCTGGTTGAATTaGGTCATGTACTGGTGCATA +
Preference number: 5 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLIPLWLN*VMYWCI
Trigger: TATGCACCAGTACATGACCAAATTCAACCAGAGGGG...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CATGTATTCATTTGTTTTTGGTTAAGGATTCACCTATCTGGTATGTGCTGTGCTTCTACGCCCCTCTGGTaGAATTTGGTCATGTACTGG +
Preference number: 5 (lower is better)
Translates to: HVFICFWLRIHLSGMCCASTPLW*NLVMYW
Trigger: CCAGTACATGACCAAATTCAACCAGAGGGGCGTAGA...AGCACAGCACATACCAGATAGGTGAATCCTTAACCAAAAACAAATGAATACATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp ATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTACCTCACTACAGTCCTaGGGGTATTTAGAGGCCATT +
Preference number: 5 (lower is better)
Translates to: IGHPTFTLYNVGHSTCFLTSLQS*GYLEAI
Trigger: AATGGCCTCTAAATACCCCAAGGACTGTAGTGAGGT...AAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp TTTGAGCTTTCCAAATCCATCAAATTTCCAAAGATGATTGCTCAGATGAGCCACACCTCACTACAGTCCTaGGGGTATTTAGAGGCCATT +
Preference number: 5 (lower is better)
Translates to: FELSKSIKFPKMIAQMSHTSLQS*GYLEAI
Trigger: AATGGCCTCTAAATACCCCAAGGACTGTAGTGAGGT...GTGGCTCATCTGAGCAATCATCTTTGGAAATTTGATGGATTTGGAAAGCTCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp TTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATATCCCTGGGAGAACTaGCTTTGGTTTTCACGTAGG +
Preference number: 5 (lower is better)
Translates to: LDIQRLPSIMLAILHVSLYPWEN*LWFSRR
Trigger: CCTACGTGAAAACCAAAGCAAGTTCTCCCAGGGATA...TAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CATGTATTCATTTGTTTTTGGTTAAGGATTCACCTATCTGGTATGTGCTGTGCTGGAAGCCCATCTTCATaGTGTAGTGGGTTCCTGTTC +
Preference number: 5 (lower is better)
Translates to: HVFICFWLRIHLSGMCCAGSPSS*CSGFLF
Trigger: GAACAGGAACCCACTACACAATGAAGATGGGCTTCC...AGCACAGCACATACCAGATAGGTGAATCCTTAACCAAAAACAAATGAATACATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp ACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACACTCGATGCAGAACCCCTaGCAGCACTTCTTCACATTC +
Preference number: 5 (lower is better)
Translates to: TFTLYNVGHSTCFLIDKHSMQNP*QHFFTF
Trigger: GAATGTGAAGAAGTGCTGCAAGGGGTTCTGCATCGA...GTGTTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATATTCCATTCCACACATaGTTAACCTTTTTCCCATGC +
Preference number: 5 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHIPFHT*LTFFPC
Trigger: GCATGGGAAAAAGGTTAACAATGTGTGGAATGGAAT...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CATGTATTCATTTGTTTTTGGTTAAGGATTCACCTATCTGGTATGTGCTGTGCTCTTTCTGTACTTCCATaGGGTACTGTCCCAAATCGG +
Preference number: 5 (lower is better)
Translates to: HVFICFWLRIHLSGMCCALSVLP*GTVPNR
Trigger: CCGATTTGGGACAGTACCCAATGGAAGTACAGAAAG...AGCACAGCACATACCAGATAGGTGAATCCTTAACCAAAAACAAATGAATACATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATTGTGACCCAGTCAGATaGAAGTCTGGAGACTTCTTC +
Preference number: 5 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDCDPVR*KSGDFF
Trigger: GAAGAAGTCTCCAGACTTCAATCTGACTGGGTCACA...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCATGTTGGACATGTaGGAGATGTTTTTAGCTGAG +
Preference number: 5 (lower is better)
Translates to: GAIGHPTFTLYNVGHSTCFMLDM*EMFLAE
Trigger: CTCAGCTAAAAACATCTCCAACATGTCCAACATGAA...ACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATTTCATGTTGGACATGTaGGAGATGTTTTTAGCTGAG +
Preference number: 5 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHFMLDM*EMFLAE
Trigger: CTCAGCTAAAAACATCTCCAACATGTCCAACATGAA...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTGGCCACAAATGTTaGCAGTTCATTCATGTTTTC +
Preference number: 5 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHVGHKC*QFIHVF
Trigger: GAAAACATGAATGAACTGCAAACATTTGTGGCCAAC...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp ACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACACTCCACTGTGTTGGGGTaGGACTCATTGAGAGTGAGA +
Preference number: 5 (lower is better)
Translates to: TFTLYNVGHSTCFLIDKHSTVLG*DSLRVR
Trigger: TCTCACTCTCAATGAGTCCAACCCCAACACAGTGGA...GTGTTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCATTCTCATTGTGATCTaGGTAGGTATCTGGGAAGTC +
Preference number: 5 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSILIVI*VGIWEV
Trigger: GACTTCCCAGATACCTACCAAGATCACAATGAGAAT...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCAGTTTATACTGGTCATaGTTGGGAAGCCCATCTTCA +
Preference number: 5 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSSLYWS*LGSPSS
Trigger: TGAAGATGGGCTTCCCAACAATGACCAGTATAAACT...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATTTGTACACACGTCTATaGCTGCAGGAATTTAAAACC +
Preference number: 5 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHLYTRL*LQEFKT
Trigger: GGTTTTAAATTCCTGCAGCAATAGACGTGTGTACAA...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp AGGGTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATATACTAGGCATTTTCTaGTACACACGTCTATTGCTG +
Preference number: 5 (lower is better)
Translates to: RVLLDIQRLPSIMLAILHILGIF*YTRLLL
Trigger: CAGCAATAGACGTGTGTACAAGAAAATGCCTAGTAT...ATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCACCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATATTGTCCACTGTTGTCTaGATGAAGCTGATGAAGTCT +
Preference number: 5 (lower is better)
Translates to: GHPTFTLYNVGHSTCFLILSTVV*MKLMKS
Trigger: AGACTTCATCAGCTTCATCAAGACAACAGTGGACAA...TATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GTGCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTACATTCATCCCTTCGTaGGTTGAATTGTTGATCTTG +
Preference number: 5 (lower is better)
Translates to: VLLDIQRLPSIMLAILHVTFIPS*VELLIL
Trigger: CAAGATCAACAATTCAACCAACGAAGGGATGAATGT...AACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp ACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACACAGAAGCTTTAGCATGTaGCTCTGTGACCCAGTCAGA +
Preference number: 5 (lower is better)
Translates to: TFTLYNVGHSTCFLIDKHRSFSM*LCDPVR
Trigger: TCTGACTGGGTCACAGAGCAACATGCTAAAGCTTCT...GTGTTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACGCGAGGAGTTCATGTaGGACATGTTGGAGATGTTT +
Preference number: 5 (lower is better)
Translates to: PTFTLYNVGHSTCFLIDKREEFM*DMLEMF
Trigger: AAACATCTCCAACATGTCCAACATGAACTCCTCGCG...TTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATTTACTGAGACTATCCTaGTGCCTGTTGGCCACAAAT +
Preference number: 5 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDLLRLS*CLLATN
Trigger: ATTTGTGGCCAACAGGCACAAGGATAGTCTCAGTAA...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp ATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTTTATACTGGTCATTGTaGGGAAGCCCATCTTCATTG +
Preference number: 5 (lower is better)
Translates to: IGHPTFTLYNVGHSTCFLLYWSL*GSPSSL
Trigger: CAATGAAGATGGGCTTCCCAACAATGACCAGTATAA...AAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAGCAATATGATGCTGTaGACCTCAAGGATGACCGAA +
Preference number: 5 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDSNMML*TSRMTE
Trigger: TTCGGTCATCCTTGAGGTCAACAGCATCATATTGCT...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCATACTAGGCATTTTCTaGTACACACGTCTATTGCTG +
Preference number: 5 (lower is better)
Translates to: LLDIQRLPSIMLAILHVSILGIF*YTRLLL
Trigger: CAGCAATAGACGTGTGTACAAGAAAATGCCTAGTAT...GGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp ATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTTCGTTGGTTGAATTGTaGATCTTGACAAACTTCCGA +
Preference number: 5 (lower is better)
Translates to: IGHPTFTLYNVGHSTCFLSLVEL*ILTNFR
Trigger: TCGGAAGTTTGTCAAGATCAACAATTCAACCAACGA...AAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp GCTATTGGACATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCTATATCAAATTTCCCTaGTCTGAAACCATGTCCACA +
Preference number: 5 (lower is better)
Translates to: AIGHPTFTLYNVGHSTCFYIKFP*SETMST
Trigger: TGTGGACATGGTTTCAGACAAGGGAAATTTGATATA...GAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATGTCCAATAGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp ACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACACAGACAGGCATCACACTaGAAAGGAGATCTCATGGTA +
Preference number: 5 (lower is better)
Translates to: TFTLYNVGHSTCFLIDKHRQASH*KGDLMV
Trigger: TACCATGAGATCTCCTTTCAAGTGTGATGCCTGTCT...GTGTTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CATCCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATACATTCATCCCTTCGTaGGTTGAATTGTTGATCTTG +
Preference number: 5 (lower is better)
Translates to: HPTFTLYNVGHSTCFLIDTFIPS*VELLIL
Trigger: CAAGATCAACAATTCAACCAACGAAGGGATGAATGT...ATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGGATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CTTATTGTCTGGGTCAGACTTACATGCATACCATATTGCTTATTCTGTATTAGAAGTTTATACTGGTCATaGTTGGGAAGCCCATCTTCA +
Preference number: 5 (lower is better)
Translates to: LIVWVRLTCIPYCLFCIRSLYWS*LGSPSS
Trigger: TGAAGATGGGCTTCCCAACAATGACCAGTATAAACT...TCTAATACAGAATAAGCAATATGGTATGCATGTAAGTCTGACCCAGACAATAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACGATTAATCTTTAGCTaGTTCTTCTGGAACTGGAGG +
Preference number: 5 (lower is better)
Translates to: PTFTLYNVGHSTCFLIDKRLIFS*FFWNWR
Trigger: CCTCCAGTTCCAGAAGAACAAGCTAAAGATTAATCG...TTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp ACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAACACATTCCATTCCACACATaGTTAACCTTTTTCCCATGC +
Preference number: 5 (lower is better)
Translates to: TFTLYNVGHSTCFLIDKHIPFHT*LTFFPC
Trigger: GCATGGGAAAAAGGTTAACAATGTGTGGAATGGAAT...GTGTTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS-3UTR CAA 90 bp CCAACGTTTACCCTCTATAATGTTGGCCATTCTACATGTTTCCTTATAGATAAATATATCAAATTTCCCTaGTCTGAAACCATGTCCACA +
Preference number: 5 (lower is better)
Translates to: PTFTLYNVGHSTCFLIDKYIKFP*SETMST
Trigger: TGTGGACATGGTTTCAGACAAGGGAAATTTGATATA...TTTATCTATAAGGAAACATGTAGAATGGCCAACATTATAGAGGGTAAACGTTGG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS GCA 72 bp GTACCCTTCTCCGCCGCCGCGTTCTGCGCCGGACCGTaGCAGACCAGAAGGGCCGGCAATACCAGCAAGGTC +
Preference number: 6 (lower is better)
Translates to: VPFSAAAFCAGP*QTRRAGNTSKV
Trigger: GACCTTGCTGGTATTGCCGGCCCTTCTGGTCTGGCACGGTCCGGCGCAGAACGCGGCGGCGGAGAAGGGTAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS GCA 72 bp TTCAGCGCTGGAGTACCCTTCTCCGCCGCCGCGTTCTaGGCCGGACCGTGCCAGACCAGAAGGGCCGGCAAT +
Preference number: 6 (lower is better)
Translates to: FSAGVPFSAAAF*AGPCQTRRAGN
Trigger: ATTGCCGGCCCTTCTGGTCTGGCACGGTCCGGCGCAGAACGCGGCGGCGGAGAAGGGTACTCCAGCGCTGAA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp GTGGCTGTGACCCAGCAGCACCGCAATGTTCAGCGCTaGAGTACCCTTCTCCGCCGCCGCGTTCTGCGCCGG +
Preference number: 6 (lower is better)
Translates to: VAVTQQHRNVQR*STLLRRRVLRR
Trigger: CCGGCGCAGAACGCGGCGGCGGAGAAGGGTACTCCAGCGCTGAACATTGCGGTGCTGCTGGGTCACAGCCAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS GCA 72 bp GCCACCACGTTCACATCCAGGGGCAAGCCGGTTGCCTaGTCCGGGCCCCACAGATTTCGAAGTTCGCGTTCT +
Preference number: 6 (lower is better)
Translates to: ATTFTSRGKPVA*SGPHRFRSSRS
Trigger: AGAACGCGAACTTCGAAATCTGTGGGGCCCGGAGCAGGCAACCGGCTTGCCCCTGGATGTGAACGTGGTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp GCGGGGTCTCCGGCTTCTCTGTCTGCCCGTAGCAGCTaGCCTTGGCCTCGGGAATGTAGGAGAATTTCTCCA +
Preference number: 6 (lower is better)
Translates to: AGSPASLSARSS*PWPRECRRISP
Trigger: TGGAGAAATTCTCCTACATTCCCGAGGCCAAGGCCAGCTGCTACGGGCAGACAGAGAAGCCGGAGACCCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 72 bp ATAACGCCACCACGTTCACATCCAGGGGCAAGCCGGTaGCCTGCTCCGGGCCCCACAGATTTCGAAGTTCGC +
Preference number: 6 (lower is better)
Translates to: ITPPRSHPGASR*PAPGPTDFEVR
Trigger: GCGAACTTCGAAATCTGTGGGGCCCGGAGCAGGCAACCGGCTTGCCCCTGGATGTGAACGTGGTGGCGTTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS TCA 72 bp AGAAGAGCAGCCCGGGCCGGTCAGAACACACGCCTGTaGAGCAGAAGCGCAGCTTCCAGTAGAAGAGGTGCT +
Preference number: 6 (lower is better)
Translates to: RRAARAGQNTRL*SRSAASSRRGA
Trigger: AGCACCTCTTCTACTGGAAGCTGCGCTTCTGCTTCACAGGCGTGTGTTCTGACCGGCCCGGGCTGCTCTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS TCA 72 bp GCTGCCGGGGTCGGGAGTTCCCTTTGGATTCAGTGCTaGCAGCCACCTCCACTGTGTTGGGGTTGGACTCAT +
Preference number: 6 (lower is better)
Translates to: AAGVGSSLWIQC*QPPPLCWGWTH
Trigger: ATGAGTCCAACCCCAACACAGTGGAGGTGGCTGTCAGCACTGAATCCAAAGGGAACTCCCGACCCCGGCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp GCCTCTTGGTCCGTATCATCTCCAAACACCAAGCCATaGATGCGCGCCCCGGACATGAGGTCGCACACATGC +
Preference number: 6 (lower is better)
Translates to: ASWSVSSPNTKP*MRAPDMRSHTC
Trigger: GCATGTGTGCGACCTCATGTCCGGGGCGCGCATCCATGGCTTGGTGTTTGGAGATGATACGGACCAAGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 90 bp GGTTCATCAATAACGCCACCACGTTCACATCCAGGGGCAAGCCGGTaGCCTGCTCCGGGCCCCACAGATTTCGAAGTTCGCGTTCTGTCA +
Preference number: 6 (lower is better)
Translates to: GSSITPPRSHPGASR*PAPGPTDFEVRVLS
Trigger: TGACAGAACGCGAACTTCGAAATCTGTGGGGCCCGGAGCAGGCAACCGGCTTGCCCCTGGATGTGAACGTGGTGGCGTTATTGATGAACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS GCA 72 bp GGCCTGAGTAGGTGGGCAGGTTTGAGAGGCAGCTTCTaGAATGCGTGGAGTTCTGCCGATATCGATCACTGC +
Preference number: 6 (lower is better)
Translates to: GLSRWAGLRGSF*NAWSSADIDHC
Trigger: GCAGTGATCGATATCGGCAGAACTCCACGCATTGCAGAAGCTGCCTCTCAAACCTGCCCACCTACTCAGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp TCTCCGGCTTCTCTGTCTGCCCGTAGCAGCTGGCCTTaGCCTCGGGAATGTAGGAGAATTTCTCCAACATGG +
Preference number: 6 (lower is better)
Translates to: SPASLSARSSWP*PRECRRISPTW
Trigger: CCATGTTGGAGAAATTCTCCTACATTCCCGAGGCCAAGGCCAGCTGCTACGGGCAGACAGAGAAGCCGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS TCA 72 bp AGATTTCGAAGTTCGCGTTCTGTCACGTCGTGGCTGTaGCCCAGCAGCACCGCAATGTTCAGCGCTGGAGTA +
Preference number: 6 (lower is better)
Translates to: RFRSSRSVTSWL*PSSTAMFSAGV
Trigger: TACTCCAGCGCTGAACATTGCGGTGCTGCTGGGTCACAGCCACGACGTGACAGAACGCGAACTTCGAAATCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS GCA 72 bp CCGTCACCAACAAACTGGAGCAGAGCGAGGTCAATCTaGCTCTTCCAGGGTGAGCCCTTCTGCAGAGCAATT +
Preference number: 6 (lower is better)
Translates to: PSPTNWSRARSI*LFQGEPFCRAI
Trigger: AATTGCTCTGCAGAAGGGCTCACCCTGGAAGAGGCAGATTGACCTCGCTCTGCTCCAGTTTGTTGGTGACGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp ACAGGGTACCGTGTTCCTGACGCAGGTCTCAGTCAGTaGGTCTATGTCTTCTACGATGACGAAGGGGGCTTC +
Preference number: 6 (lower is better)
Translates to: TGYRVPDAGLSQ*VYVFYDDEGGF
Trigger: GAAGCCCCCTTCGTCATCGTAGAAGACATAGACCCACTGACTGAGACCTGCGTCAGGAACACGGTACCCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp GTCTCCAGCTCTTCCATCTCACCGTCACCAACAAACTaGAGCAGAGCGAGGTCAATCTGCCTCTTCCAGGGT +
Preference number: 6 (lower is better)
Translates to: VSSSSISPSPTN*SRARSICLFQG
Trigger: ACCCTGGAAGAGGCAGATTGACCTCGCTCTGCTCCAGTTTGTTGGTGACGGTGAGATGGAAGAGCTGGAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 90 bp AACAGGCTCCCGTATAAGTTGCCCTCCAGTAGCCTTTCCCTGTCCTaGAGGCTTATGCTACGAGAGGGCCTGCTAAGGTCTATCTCCCTG +
Preference number: 6 (lower is better)
Translates to: NRLPYKLPSSSLSLS*RLMLREGLLRSISL
Trigger: CAGGGAGATAGACCTTAGCAGGCCCTCTCGTAGCATAAGCCTCAAGGACAGGGAAAGGCTACTGGAGGGCAACTTATACGGGAGCCTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp ATGACCGTGGCTTGCTGCTGGATGGAAGCTCCAAACTaGAAGAACGTGGATGTCGGATCCTTGTCAGCCATG +
Preference number: 6 (lower is better)
Translates to: MTVACCWMEAPN*KNVDVGSLSAM
Trigger: CATGGCTGACAAGGATCCGACATCCACGTTCTTCCAGTTTGGAGCTTCCATCCAGCAGCAAGCCACGGTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp GGTTCTGGTTTAGAGAATCCTGGCGTAGAGACTCCATaGATTTCTTCCAAAGCTGCCGGGGTCGGGAGTTCC +
Preference number: 6 (lower is better)
Translates to: GSGLENPGVETP*ISSKAAGVGSS
Trigger: GGAACTCCCGACCCCGGCAGCTTTGGAAGAAATCCATGGAGTCTCTACGCCAGGATTCTCTAAACCAGAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp AGGTGGGCAGGTTTGAGAGGCAGCTTCTGCAATGCGTaGAGTTCTGCCGATATCGATCACTGCCCTCACTAT +
Preference number: 6 (lower is better)
Translates to: RWAGLRGSFCNA*SSADIDHCPHY
Trigger: ATAGTGAGGGCAGTGATCGATATCGGCAGAACTCCACGCATTGCAGAAGCTGCCTCTCAAACCTGCCCACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 72 bp CGGCAGTGGTTAAGATCCCAAGACCGTCTCTCACTCTaGCCTCCAGACTGTAGTCCCAGTCGTCGTAAGAGA +
Preference number: 6 (lower is better)
Translates to: RQWLRSQDRLSL*PPDCSPSRRKR
Trigger: TCTCTTACGACGACTGGGACTACAGTCTGGAGGCAAGAGTGAGAGACGGTCTTGGGATCTTAACCACTGCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 72 bp CCGTATAAGTTGCCCTCCAGTAGCCTTTCCCTGTCCTaGAGGCTTATGCTACGAGAGGGCCTGCTAAGGTCT +
Preference number: 6 (lower is better)
Translates to: PYKLPSSSLSLS*RLMLREGLLRS
Trigger: AGACCTTAGCAGGCCCTCTCGTAGCATAAGCCTCAAGGACAGGGAAAGGCTACTGGAGGGCAACTTATACGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 72 bp TTGCTTGAGGGGACACTGAACAGGCTCCCGTATAAGTaGCCCTCCAGTAGCCTTTCCCTGTCCTTGAGGCTT +
Preference number: 6 (lower is better)
Translates to: LLEGTLNRLPYK*PSSSLSLSLRL
Trigger: AAGCCTCAAGGACAGGGAAAGGCTACTGGAGGGCAACTTATACGGGAGCCTGTTCAGTGTCCCCTCAAGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 90 bp CCCAAGAGTTTGCTTGAGGGGACACTGAACAGGCTCCCGTATAAGTaGCCCTCCAGTAGCCTTTCCCTGTCCTTGAGGCTTATGCTACGA +
Preference number: 6 (lower is better)
Translates to: PKSLLEGTLNRLPYK*PSSSLSLSLRLMLR
Trigger: TCGTAGCATAAGCCTCAAGGACAGGGAAAGGCTACTGGAGGGCAACTTATACGGGAGCCTGTTCAGTGTCCCCTCAAGCAAACTCTTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS GCA 72 bp TCCTTGCCATCCCAAGTCACATTGACCATAAATTGGTaGAGAGTGTGTAGCGGGGTCTCCGGCTTCTCTGTC +
Preference number: 6 (lower is better)
Translates to: SLPSQVTLTINW*RVCSGVSGFSV
Trigger: GACAGAGAAGCCGGAGACCCCGCTACACACTCTGCACCAATTTATGGTCAATGTGACTTGGGATGGCAAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS GCA 72 bp AGGTTTGAGAGGCAGCTTCTGCAATGCGTGGAGTTCTaGCGATATCGATCACTGCCCTCACTATGTGGGGAA +
Preference number: 6 (lower is better)
Translates to: RFERQLLQCVEF*RYRSLPSLCGE
Trigger: TTCCCCACATAGTGAGGGCAGTGATCGATATCGGCAGAACTCCACGCATTGCAGAAGCTGCCTCTCAAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS GCA 72 bp CAGAGGTATGGTCTGGCAAGAGAGATTTGCTCCTCTTaGTGTCCTCCAGACCTTGGGGGAAAAGGGAGCTTT +
Preference number: 6 (lower is better)
Translates to: QRYGLAREICSS*CPPDLGGKGSF
Trigger: AAAGCTCCCTTTTCCCCCAAGGTCTGGAGGACAGCAAGAGGAGCAAATCTCTCTTGCCAGACCATACCTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 72 bp ACAGAGGAGTGGATCTTCTTCAGCTGGACCTGTGTCTaGGCGTCCTCAAAAGAGGTGTCCAGTGTGATCACG +
Preference number: 6 (lower is better)
Translates to: TEEWIFFSWTCV*ASSKEVSSVIT
Trigger: CGTGATCACACTGGACACCTCTTTTGAGGACGCCAAGACACAGGTCCAGCTGAAGAAGATCCACTCCTCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 72 bp CCTTTGGATTCAGTGCTGACAGCCACCTCCACTGTGTaGGGGTTGGACTCATTGAGAGTGAGAGGATGCTGT +
Preference number: 6 (lower is better)
Translates to: PLDSVLTATSTV*GLDSLRVRGCC
Trigger: ACAGCATCCTCTCACTCTCAATGAGTCCAACCCCAACACAGTGGAGGTGGCTGTCAGCACTGAATCCAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 90 bp AGCAGGATGACAGAGGAGTGGATCTTCTTCAGCTGGACCTGTGTCTaGGCGTCCTCAAAAGAGGTGTCCAGTGTGATCACGTTCTGCATA +
Preference number: 6 (lower is better)
Translates to: SRMTEEWIFFSWTCV*ASSKEVSSVITFCI
Trigger: TATGCAGAACGTGATCACACTGGACACCTCTTTTGAGGACGCCAAGACACAGGTCCAGCTGAAGAAGATCCACTCCTCTGTCATCCTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 90 bp GTGTGGAGGAAAGGATTATCAGAGGTATGGTCTGGCAAGAGAGATTaGCTCCTCTTGCTGTCCTCCAGACCTTGGGGGAAAAGGGAGCTT +
Preference number: 6 (lower is better)
Translates to: VWRKGLSEVWSGKRD*LLLLSSRPWGKREL
Trigger: AAGCTCCCTTTTCCCCCAAGGTCTGGAGGACAGCAAGAGGAGCAAATCTCTCTTGCCAGACCATACCTCTGATAATCCTTTCCTCCACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 90 bp ACACATCACTGTGGCCCCGACTGTCCCTGGAGCAATATGATGCTGTaGACCTCAAGGATGACCGAAGATAGCTGTCATTTACTGCCTGTG +
Preference number: 6 (lower is better)
Translates to: THHCGPDCPWSNMML*TSRMTEDSCHLLPV
Trigger: CACAGGCAGTAAATGACAGCTATCTTCGGTCATCCTTGAGGTCAACAGCATCATATTGCTCCAGGGACAGTCGGGGCCACAGTGATGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS TCA 72 bp GGATCCTTGTCAGCCATGATCATAGATGCACCCCCATaGATGCCCAAGATGGGGATGAAAGTCTGTGAGGAG +
Preference number: 6 (lower is better)
Translates to: GSLSAMIIDAPP*MPKMGMKVCEE
Trigger: CTCCTCACAGACTTTCATCCCCATCTTGGGCATTCATGGGGGTGCATCTATGATCATGGCTGACAAGGATCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS TCA 72 bp TGCCTCCAGACTGTAGTCCCAGTCGTCGTAAGAGACTaGAATGAGACCCGATGGAAACTCTTTGGGGATGAG +
Preference number: 6 (lower is better)
Translates to: CLQTVVPVVVRD*NETRWKLFGDE
Trigger: CTCATCCCCAAAGAGTTTCCATCGGGTCTCATTTCAGTCTCTTACGACGACTGGGACTACAGTCTGGAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS GCA 72 bp CGTGGATGTCGGATCCTTGTCAGCCATGATCATAGATaGACCCCCATGAATGCCCAAGATGGGGATGAAAGT +
Preference number: 6 (lower is better)
Translates to: RGCRILVSHDHR*TPMNAQDGDES
Trigger: ACTTTCATCCCCATCTTGGGCATTCATGGGGGTGCATCTATGATCATGGCTGACAAGGATCCGACATCCACG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS GCA 72 bp GCGTCCTCAAAAGAGGTGTCCAGTGTGATCACGTTCTaGATATCCCAGCCCACAAAGCTGTTGTCCACTGTT +
Preference number: 6 (lower is better)
Translates to: ASSKEVSSVITF*ISQPTKLLSTV
Trigger: AACAGTGGACAACAGCTTTGTGGGCTGGGATATGCAGAACGTGATCACACTGGACACCTCTTTTGAGGACGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp AAGTCCTTGCCATCCCAAGTCACATTGACCATAAATTaGTGCAGAGTGTGTAGCGGGGTCTCCGGCTTCTCT +
Preference number: 6 (lower is better)
Translates to: KSLPSQVTLTIN*CRVCSGVSGFS
Trigger: AGAGAAGCCGGAGACCCCGCTACACACTCTGCACCAATTTATGGTCAATGTGACTTGGGATGGCAAGGACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp GTCATCTGGCTCACAGTCAGAAAAGGACTTATACCTTaGCCACACAGCATGCCGCAGGCTCAGAGTCTGATT +
Preference number: 6 (lower is better)
Translates to: VIWLTVRKGLIP*PHSMPQAQSLI
Trigger: AATCAGACTCTGAGCCTGCGGCATGCTGTGTGGCCAAGGTATAAGTCCTTTTCTGACTGTGAGCCAGATGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp TCTGCAGTCTTCTCATCCCTCTGGGAGACTGGGTTCTaGTTTAGAGAATCCTGGCGTAGAGACTCCATGGAT +
Preference number: 6 (lower is better)
Translates to: SAVFSSLWETGF*FRESWRRDSMD
Trigger: ATCCATGGAGTCTCTACGCCAGGATTCTCTAAACCAGAACCCAGTCTCCCAGAGGGATGAGAAGACTGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp GGAGTTCTGCCGATATCGATCACTGCCCTCACTATGTaGGGAACCCTTGTCTTTCAAGGTAAAGTGCTTGGC +
Preference number: 6 (lower is better)
Translates to: GVLPISITALTM*GTLVFQGKVLG
Trigger: GCCAAGCACTTTACCTTGAAAGACAAGGGTTCCCCACATAGTGAGGGCAGTGATCGATATCGGCAGAACTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp TCCCCGTACGTGTGGAGGAAAGGATTATCAGAGGTATaGTCTGGCAAGAGAGATTTGCTCCTCTTGCTGTCC +
Preference number: 6 (lower is better)
Translates to: SPYVWRKGLSEV*SGKRDLLLLLS
Trigger: GGACAGCAAGAGGAGCAAATCTCTCTTGCCAGACCATACCTCTGATAATCCTTTCCTCCACACGTACGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 72 bp TGTCATCTGGCTCACAGTCAGAAAAGGACTTATACCTaGGCCACACAGCATGCCGCAGGCTCAGAGTCTGAT +
Preference number: 6 (lower is better)
Translates to: CHLAHSQKRTYT*ATQHAAGSESD
Trigger: ATCAGACTCTGAGCCTGCGGCATGCTGTGTGGCCAAGGTATAAGTCCTTTTCTGACTGTGAGCCAGATGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp GATCTAAGTGGAAGCTGGGCTCCTTCTCACCATCGATaGTGTAGATCTTATCCCTGGGAGAACTTGCTTTGG +
Preference number: 6 (lower is better)
Translates to: DLSGSWAPSHHR*CRSYPWENLLW
Trigger: CCAAAGCAAGTTCTCCCAGGGATAAGATCTACACCATCGATGGTGAGAAGGAGCCCAGCTTCCACTTAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp CTCCCAATAACTAAGCGTTGGTCATCCCCGTACGTGTaGAGGAAAGGATTATCAGAGGTATGGTCTGGCAAG +
Preference number: 6 (lower is better)
Translates to: LPITKRWSSPYV*RKGLSEVWSGK
Trigger: CTTGCCAGACCATACCTCTGATAATCCTTTCCTCCACACGTACGGGGATGACCAACGCTTAGTTATTGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp CTGAAATATACACATCACTGTGGCCCCGACTGTCCCTaGAGCAATATGATGCTGTTGACCTCAAGGATGACC +
Preference number: 6 (lower is better)
Translates to: LKYTHHCGPDCP*SNMMLLTSRMT
Trigger: GGTCATCCTTGAGGTCAACAGCATCATATTGCTCCAGGGACAGTCGGGGCCACAGTGATGTGTATATTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 72 bp TCAGTGAAGGACAAGTCCTTGCCATCCCAAGTCACATaGACCATAAATTGGTGCAGAGTGTGTAGCGGGGTC +
Preference number: 6 (lower is better)
Translates to: SVKDKSLPSQVT*TINWCRVCSGV
Trigger: GACCCCGCTACACACTCTGCACCAATTTATGGTCAATGTGACTTGGGATGGCAAGGACTTGTCCTTCACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 72 bp GTTGTGCCTTTAGGATTCTGGACGGGCACAGAATTGTaGAAGACCAGGCCCCAGAGGAGCCATATAGCTTTT +
Preference number: 6 (lower is better)
Translates to: VVPLGFWTGTEL*KTRPQRSHIAF
Trigger: AAAAGCTATATGGCTCCTCTGGGGCCTGGTCTTCAACAATTCTGTGCCCGTCCAGAATCCTAAAGGCACAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 90 bp CATGGGCAGTGTGGAGTCCCCCTTGCGGAAATTCTCATTGTGATCTaGGTAGGTATCTGGGAAGTCCACATTCTCAGGCAAGACTATGTT +
Preference number: 6 (lower is better)
Translates to: HGQCGVPLAEILIVI*VGIWEVHILRQDYV
Trigger: AACATAGTCTTGCCTGAGAATGTGGACTTCCCAGATACCTACCAAGATCACAATGAGAATTTCCGCAAGGGGGACTCCACACTGCCCATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp TGTAGGAGAATTTCTCCAACATGGAAGATGCGGCAGTaGTTAAGATCCCAAGACCGTCTCTCACTCTTGCCT +
Preference number: 6 (lower is better)
Translates to: CRRISPTWKMRQ*LRSQDRLSLLP
Trigger: AGGCAAGAGTGAGAGACGGTCTTGGGATCTTAACCACTGCCGCATCTTCCATGTTGGAGAAATTCTCCTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp CATGTGGCCCGGCTTGAGGTTTCAGAAATGTCAGAATaGGCTACCTCTTCTGGAAGATACCTAGGACTCTTT +
Preference number: 6 (lower is better)
Translates to: HVARLEVSEMSE*ATSSGRYLGLF
Trigger: AAAGAGTCCTAGGTATCTTCCAGAAGAGGTAGCCCATTCTGACATTTCTGAAACCTCAAGCCGGGCCACATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp CTTCATTGTGTAGTGGGTTCCTGTTCATGGGCAGTGTaGAGTCCCCCTTGCGGAAATTCTCATTGTGATCTT +
Preference number: 6 (lower is better)
Translates to: LHCVVGSCSWAV*SPPCGNSHCDL
Trigger: AAGATCACAATGAGAATTTCCGCAAGGGGGACTCCACACTGCCCATGAACAGGAACCCACTACACAATGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 72 bp GCTCTTTTGGGTGAGTCCATTCGCGAGGAGTTCATGTaGGACATGTTGGAGATGTTTTTAGCTGAGCGGAGA +
Preference number: 6 (lower is better)
Translates to: ALLGESIREEFM*DMLEMFLAERR
Trigger: TCTCCGCTCAGCTAAAAACATCTCCAACATGTCCAACATGAACTCCTCGCGAATGGACTCACCCAAAAGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 72 bp TATTATTATCTGGCTCCCTGTGGCATGTGGCCCGGCTaGAGGTTTCAGAAATGTCAGAATGGGCTACCTCTT +
Preference number: 6 (lower is better)
Translates to: YYYLAPCGMWPG*RFQKCQNGLPL
Trigger: AAGAGGTAGCCCATTCTGACATTTCTGAAACCTCAAGCCGGGCCACATGCCACAGGGAGCCAGATAATAATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 72 bp AAAGGATTATCAGAGGTATGGTCTGGCAAGAGAGATTaGCTCCTCTTGCTGTCCTCCAGACCTTGGGGGAAA +
Preference number: 6 (lower is better)
Translates to: KGLSEVWSGKRD*LLLLSSRPWGK
Trigger: TTTCCCCCAAGGTCTGGAGGACAGCAAGAGGAGCAAATCTCTCTTGCCAGACCATACCTCTGATAATCCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 90 bp TCGATGCAGAACCCCTTGCAGCACTTCTTCACATTCATCCCTTCGTaGGTTGAATTGTTGATCTTGACAAACTTCCGACAGGGTACCGTG +
Preference number: 6 (lower is better)
Translates to: SMQNPLQHFFTFIPS*VELLILTNFRQGTV
Trigger: CACGGTACCCTGTCGGAAGTTTGTCAAGATCAACAATTCAACCAACGAAGGGATGAATGTGAAGAAGTGCTGCAAGGGGTTCTGCATCGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 90 bp GCTGAGCGGAGAAGCTTTAGCATGTTGCTCTGTGACCCAGTCAGATaGAAGTCTGGAGACTTCTTCTTTTCTTCAATGTGCACTCCATGG +
Preference number: 6 (lower is better)
Translates to: AERRSFSMLLCDPVR*KSGDFFFSSMCTPW
Trigger: CCATGGAGTGCACATTGAAGAAAAGAAGAAGTCTCCAGACTTCAATCTGACTGGGTCACAGAGCAACATGCTAAAGCTTCTCCGCTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 90 bp GCTCTTTTGGGTGAGTCCATTCGCGAGGAGTTCATGTTGGACATGTaGGAGATGTTTTTAGCTGAGCGGAGAAGCTTTAGCATGTTGCTC +
Preference number: 6 (lower is better)
Translates to: ALLGESIREEFMLDM*EMFLAERRSFSMLL
Trigger: GAGCAACATGCTAAAGCTTCTCCGCTCAGCTAAAAACATCTCCAACATGTCCAACATGAACTCCTCGCGAATGGACTCACCCAAAAGAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 90 bp AAGTCAGCAGCTCTTTTGGGTGAGTCCATTCGCGAGGAGTTCATGTaGGACATGTTGGAGATGTTTTTAGCTGAGCGGAGAAGCTTTAGC +
Preference number: 6 (lower is better)
Translates to: KSAALLGESIREEFM*DMLEMFLAERRSFS
Trigger: GCTAAAGCTTCTCCGCTCAGCTAAAAACATCTCCAACATGTCCAACATGAACTCCTCGCGAATGGACTCACCCAAAAGAGCTGCTGACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 90 bp TGTGGTTCTTATTATTATCTGGCTCCCTGTGGCATGTGGCCCGGCTaGAGGTTTCAGAAATGTCAGAATGGGCTACCTCTTCTGGAAGAT +
Preference number: 6 (lower is better)
Translates to: CGSYYYLAPCGMWPG*RFQKCQNGLPLLED
Trigger: ATCTTCCAGAAGAGGTAGCCCATTCTGACATTTCTGAAACCTCAAGCCGGGCCACATGCCACAGGGAGCCAGATAATAATAAGAACCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 90 bp GCTCCTTCTCACCATCGATGGTGTAGATCTTATCCCTGGGAGAACTaGCTTTGGTTTTCACGTAGGTACGTTCAACCTCACTACAGTCCT +
Preference number: 6 (lower is better)
Translates to: APSHHRWCRSYPWEN*LWFSRRYVQPHYSP
Trigger: AGGACTGTAGTGAGGTTGAACGTACCTACGTGAAAACCAAAGCAAGTTCTCCCAGGGATAAGATCTACACCATCGATGGTGAGAAGGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 90 bp TTGGGGTATTTAGAGGCCATTGACCTTTTGAAGTTATCCTTGGTCTaGTGGTTCTTATTATTATCTGGCTCCCTGTGGCATGTGGCCCGG +
Preference number: 6 (lower is better)
Translates to: LGYLEAIDLLKLSLV*WFLLLSGSLWHVAR
Trigger: CCGGGCCACATGCCACAGGGAGCCAGATAATAATAAGAACCACAAGACCAAGGATAACTTCAAAAGGTCAATGGCCTCTAAATACCCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp GCTCCTTCTCACCATCGATGGTGTAGATCTTATCCCTaGGAGAACTTGCTTTGGTTTTCACGTAGGTACGTT +
Preference number: 6 (lower is better)
Translates to: APSHHRWCRSYP*ENLLWFSRRYV
Trigger: AACGTACCTACGTGAAAACCAAAGCAAGTTCTCCCAGGGATAAGATCTACACCATCGATGGTGAGAAGGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 72 bp GAGATGTTTTTAGCTGAGCGGAGAAGCTTTAGCATGTaGCTCTGTGACCCAGTCAGATTGAAGTCTGGAGAC +
Preference number: 6 (lower is better)
Translates to: EMFLAERRSFSM*LCDPVRLKSGD
Trigger: GTCTCCAGACTTCAATCTGACTGGGTCACAGAGCAACATGCTAAAGCTTCTCCGCTCAGCTAAAAACATCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 72 bp CACCATCGATGGTGTAGATCTTATCCCTGGGAGAACTaGCTTTGGTTTTCACGTAGGTACGTTCAACCTCAC +
Preference number: 6 (lower is better)
Translates to: HHRWCRSYPWEN*LWFSRRYVQPH
Trigger: GTGAGGTTGAACGTACCTACGTGAAAACCAAAGCAAGTTCTCCCAGGGATAAGATCTACACCATCGATGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 72 bp AGTTTATACTGGTCATTGTTGGGAAGCCCATCTTCATaGTGTAGTGGGTTCCTGTTCATGGGCAGTGTGGAG +
Preference number: 6 (lower is better)
Translates to: SLYWSLLGSPSS*CSGFLFMGSVE
Trigger: CTCCACACTGCCCATGAACAGGAACCCACTACACAATGAAGATGGGCTTCCCAACAATGACCAGTATAAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS GCA 72 bp ACCATCGATGGTGTAGATCTTATCCCTGGGAGAACTTaGTTTGGTTTTCACGTAGGTACGTTCAACCTCACT +
Preference number: 6 (lower is better)
Translates to: TIDGVDLIPGRT*FGFHVGTFNLT
Trigger: AGTGAGGTTGAACGTACCTACGTGAAAACCAAAGCAAGTTCTCCCAGGGATAAGATCTACACCATCGATGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp CGATGGTGTAGATCTTATCCCTGGGAGAACTTGCTTTaGTTTTCACGTAGGTACGTTCAACCTCACTACAGT +
Preference number: 6 (lower is better)
Translates to: RWCRSYPWENLL*FSRRYVQPHYS
Trigger: ACTGTAGTGAGGTTGAACGTACCTACGTGAAAACCAAAGCAAGTTCTCCCAGGGATAAGATCTACACCATCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 90 bp GACATGTTGGAGATGTTTTTAGCTGAGCGGAGAAGCTTTAGCATGTaGCTCTGTGACCCAGTCAGATTGAAGTCTGGAGACTTCTTCTTT +
Preference number: 6 (lower is better)
Translates to: DMLEMFLAERRSFSM*LCDPVRLKSGDFFF
Trigger: AAAGAAGAAGTCTCCAGACTTCAATCTGACTGGGTCACAGAGCAACATGCTAAAGCTTCTCCGCTCAGCTAAAAACATCTCCAACATGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 90 bp CAGTCCTTGGGGTATTTAGAGGCCATTGACCTTTTGAAGTTATCCTaGGTCTTGTGGTTCTTATTATTATCTGGCTCCCTGTGGCATGTG +
Preference number: 6 (lower is better)
Translates to: QSLGYLEAIDLLKLS*VLWFLLLSGSLWHV
Trigger: CACATGCCACAGGGAGCCAGATAATAATAAGAACCACAAGACCAAGGATAACTTCAAAAGGTCAATGGCCTCTAAATACCCCAAGGACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS TCA 72 bp CTTGCAGCACTTCTTCACATTCATCCCTTCGTTGGTTaGATTGTTGATCTTGACAAACTTCCGACAGGGTAC +
Preference number: 6 (lower is better)
Translates to: LAALLHIHPFVG*IVDLDKLPTGY
Trigger: GTACCCTGTCGGAAGTTTGTCAAGATCAACAATTCAACCAACGAAGGGATGAATGTGAAGAAGTGCTGCAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 72 bp AACCCCTTGCAGCACTTCTTCACATTCATCCCTTCGTaGGTTGAATTGTTGATCTTGACAAACTTCCGACAG +
Preference number: 6 (lower is better)
Translates to: NPLQHFFTFIPS*VELLILTNFRQ
Trigger: CTGTCGGAAGTTTGTCAAGATCAACAATTCAACCAACGAAGGGATGAATGTGAAGAAGTGCTGCAAGGGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp GGTAGTTGTTACGAATATTCCTTTCTGTACTTCCATTaGGTACTGTCCCAAATCGGAAAGGCGGAGAATAGT +
Preference number: 6 (lower is better)
Translates to: GSCYEYSFLYFH*VLSQIGKAENS
Trigger: ACTATTCTCCGCCTTTCCGATTTGGGACAGTACCCAATGGAAGTACAGAAAGGAATATTCGTAACAACTACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CCA 72 bp CTTGCGGAAATTCTCATTGTGATCTTGGTAGGTATCTaGGAAGTCCACATTCTCAGGCAAGACTATGTTTTC +
Preference number: 6 (lower is better)
Translates to: LAEILIVILVGI*EVHILRQDYVF
Trigger: GAAAACATAGTCTTGCCTGAGAATGTGGACTTCCCAGATACCTACCAAGATCACAATGAGAATTTCCGCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 72 bp AGAAGCTTTAGCATGTTGCTCTGTGACCCAGTCAGATaGAAGTCTGGAGACTTCTTCTTTTCTTCAATGTGC +
Preference number: 6 (lower is better)
Translates to: RSFSMLLCDPVR*KSGDFFFSSMC
Trigger: GCACATTGAAGAAAAGAAGAAGTCTCCAGACTTCAATCTGACTGGGTCACAGAGCAACATGCTAAAGCTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5
CDS CAA 72 bp ACTGAGACTATCCTTGTGCCTGTTGGCCACAAATGTTaGCAGTTCATTCATGTTTTCTCCAAATATACTGTC +
Preference number: 6 (lower is better)
Translates to: TETILVPVGHKC*QFIHVFSKYTV
Trigger: GACAGTATATTTGGAGAAAACATGAATGAACTGCAAACATTTGTGGCCAACAGGCACAAGGATAGTCTCAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032331.8
ENSMUST00000115835.8
ENSMUST00000199708.5