RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GRIN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026959

Ensembl transcript IDs: ENSMUST00000028335.13, ENSMUST00000114307.8, ENSMUST00000114308.10, ENSMUST00000114310.10, ENSMUST00000114312.2, ENSMUST00000114314.10, ENSMUST00000114317.10, ENSMUST00000114318.10

Found 1022 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTaGGCAGTCTCTGGGGCGGGTGGGCTTCCCTCAGGCCTTCCCGAG +
Preference number: 1 (lower is better)
Translates to: GLPARQQSRRTGGPG*AVSGAGGLPSGLPE
Trigger: CTCGGGAAGGCCTGAGGGAAGCCCACCCGCCCCAGAGACTGCCCACCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR GCA 90 bp TCAGAGACCTCAGGGCCCTGCCTCTGCCGGAGCGCCCTGTGGCCCTaGCCAGCCGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCC +
Preference number: 1 (lower is better)
Translates to: SETSGPCLCRSALWP*PAGSALAHPQPLWS
Trigger: GGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCGGCTGGGCAGGGCCACAGGGCGCTCCGGCAGAGGCAGGGCCCTGAGGTCTCTGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR GCA 90 bp GGCCACTTAGGCCCCTCACCCCACTGCTCAGAGACCTCAGGGCCCTaGCTCTGCCGGAGCGCCCTGTGGCCCTGCCCAGCCGGCTCAGCT +
Preference number: 1 (lower is better)
Translates to: GHLGPSPHCSETSGP*LCRSALWPCPAGSA
Trigger: AGCTGAGCCGGCTGGGCAGGGCCACAGGGCGCTCCGGCAGAGGCAGGGCCCTGAGGTCTCTGAGCAGTGGGGTGAGGGGCCTAAGTGGCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR CCA 90 bp GCCGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTaGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGG +
Preference number: 1 (lower is better)
Translates to: AGSALAHPQPLWSAP*SCRGCPPGSRAGGR
Trigger: CCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR CCA 90 bp TGGCCCTGCCCAGCCGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTaGTCCGCACCTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGA +
Preference number: 1 (lower is better)
Translates to: WPCPAGSALAHPQPL*SAPWSCRGCPPGSR
Trigger: TCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCGGCTGGGCAGGGCCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR CCA 90 bp CACTGCTCAGAGACCTCAGGGCCCTGCCTCTGCCGGAGCGCCCTGTaGCCCTGCCCAGCCGGCTCAGCTCTGGCCCATCCTCAGCCGCTC +
Preference number: 1 (lower is better)
Translates to: HCSETSGPCLCRSAL*PCPAGSALAHPQPL
Trigger: GAGCGGCTGAGGATGGGCCAGAGCTGAGCCGGCTGGGCAGGGCCACAGGGCGCTCCGGCAGAGGCAGGGCCCTGAGGTCTCTGAGCAGTG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR GCA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTaGAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCC +
Preference number: 1 (lower is better)
Translates to: SALAHPQPLWSAPWS*RGCPPGSRAGGREA
Trigger: GGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR CCA 90 bp CCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTaGGCAGGTGGGCGCCTCCGGGGGCCTCACACCACGGTGCTGACC +
Preference number: 1 (lower is better)
Translates to: PSRAAGLISVLGRAN*AGGRLRGPHTTVLT
Trigger: GGTCAGCACCGTGGTGTGAGGCCCCCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR TCA 90 bp TGGGCGCCTCCGGGGGCCTCACACCACGGTGCTGACCGAGGGATCTaGGAGGTTGAGCGGGCCCGTGATATCAGTGGGATGGTACTGCTG +
Preference number: 1 (lower is better)
Translates to: WAPPGASHHGADRGI*EVERARDISGMVLL
Trigger: CAGCAGTACCATCCCACTGATATCACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAGCACCGTGGTGTGAGGCCCCCGGAGGCGCCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR CCA 90 bp GAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATGTACAAGGTTaGGTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTG +
Preference number: 1 (lower is better)
Translates to: EGTRLDTGRASHVQG*VSDTGLGGGWHSLV
Trigger: CACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCACCCAACCTTGTACATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR GCA 90 bp TGCGGGGCTCCTCTCAAGCCAGCGTCTGAGGAAGCCTATTGTGGCTaGAGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCT +
Preference number: 1 (lower is better)
Translates to: CGAPLKPASEEAYCG*RQKRRLSPLGVWSP
Trigger: AGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCTGCAGCCACAATAGGCTTCCTCAGACGCTGGCTTGAGAGGAGCCCCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR GCA 90 bp GGATCTGAGAGGTTGAGCGGGCCCGTGATATCAGTGGGATGGTACTaGTGTAAAATAGAAATACACAGACAAGGCGGCCCGTTAGCTCCG +
Preference number: 1 (lower is better)
Translates to: GSERLSGPVISVGWY*CKIEIHRQGGPLAP
Trigger: CGGAGCTAACGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCAGTACCATCCCACTGATATCACGGGCCCGCTCAACCTCTCAGATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR CCA 90 bp ACCGAGGGATCTGAGAGGTTGAGCGGGCCCGTGATATCAGTGGGATaGTACTGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGTTA +
Preference number: 1 (lower is better)
Translates to: TEGSERLSGPVISVG*YCCKIEIHRQGGPL
Trigger: TAACGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCAGTACCATCCCACTGATATCACGGGCCCGCTCAACCTCTCAGATCCCTCGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR-3UTR GCA 90 bp AGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGGGTGGCGTGCTCCGGGGCTCTaGGTGGGCCAGGCCGCTGTC +
Preference number: 2 (lower is better)
Translates to: RRPVSSDVGGTRGAGTGWRAPGL*VGQAAV
Trigger: GACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACG...CCACCCTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCT
78% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR-3UTR CCA 90 bp AGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGGGTGGCTCCGGGGCTCTGCGTaGGCCAGGCCGCTGTCCCGT +
Preference number: 2 (lower is better)
Translates to: RRPVSSDVGGTRGAGTGWLRGSA*ARPLSR
Trigger: ACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAG...CCACCCTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCT
78% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR-3UTR GCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCTCAGGGCCCTGCCTCTaGCGGAGCGCCCTGTGGCCC +
Preference number: 2 (lower is better)
Translates to: GYARPVSLGQRGSALLRPSGPCL*RSALWP
Trigger: GGGCCACAGGGCGCTCCGGCAGAGGCAGGGCCCTGA...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCAGCGCCCTGTGGCCCTaGCCAGCCGGCTCAGCTCTG +
Preference number: 2 (lower is better)
Translates to: GYARPVSLGQRGSALLRPSALWP*PAGSAL
Trigger: CAGAGCTGAGCCGGCTGGGCAGGGCCACAGGGCGCT...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCGGCCCCTCACCCCACTaGTCAGAGACCTCAGGGCCC +
Preference number: 2 (lower is better)
Translates to: GYARPVSLGQRGSALLRPGPSPH*SETSGP
Trigger: GGGCCCTGAGGTCTCTGAGCAGTGGGGTGAGGGGCC...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCCTCTGGTCCGCACCTTaGTCCTGCAGGGGCTGCCCG +
Preference number: 2 (lower is better)
Translates to: GYARPVSLGQRGSALLRPLWSAP*SCRGCP
Trigger: CGGGCAGCCCCTGCAGGACCAAGGTGCGGACCAGAG...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTCCGCACCTTGGTCCTaGAGGGGCTGCCCGCCAGGC +
Preference number: 2 (lower is better)
Translates to: RCCAPVARGRHALGHWESSAPWS*RGCPPG
Trigger: GCCTGGCGGGCAGCCCCTGCAGGACCAAGGTGCGGA...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCGAGACCTCAGGGCCCTaGCTCTGCCGGAGCGCCCTG +
Preference number: 2 (lower is better)
Translates to: RCCAPVARGRHALGHWESETSGP*LCRSAL
Trigger: CAGGGCGCTCCGGCAGAGGCAGGGCCCTGAGGTCTC...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR CAA 90 bp AGCCGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTaGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACG +
Preference number: 2 (lower is better)
Translates to: SRLSSGPSSAALVRT*VLQGLPARQQSRRT
Trigger: CGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCGGCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR TCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCGCTGACCGAGGGATCTaGGAGGTTGAGCGGGCCCGT +
Preference number: 2 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPADRGI*EVERAR
Trigger: ACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAGC...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR-3UTR GCA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCCGTGCTCCGGGGCTCTaGGTGGGCCAGGCCGCTGTC +
Preference number: 2 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGRAPGL*VGQAAV
Trigger: GACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACG...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR-3UTR GCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCTCAGGGCCCTGCCTCTaGCGGAGCGCCCTGTGGCCC +
Preference number: 2 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSSGPCL*RSALWP
Trigger: GGGCCACAGGGCGCTCCGGCAGAGGCAGGGCCCTGA...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGCTCCGGGGCTCTGCGTaGGCCAGGCCGCTGTCCCGT +
Preference number: 2 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQLRGSA*ARPLSR
Trigger: ACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAG...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR-3UTR CCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCAGGGTGGGCAGTCTCTaGGGCGGGTGGGCTTCCCTC +
Preference number: 2 (lower is better)
Translates to: RCCAPVARGRHALGHWESRVGSL*GGWASL
Trigger: GAGGGAAGCCCACCCGCCCCAGAGACTGCCCACCCT...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCGCTTGGGGTAGTGGCTaGAGGAAGGATGGGGCTGCC +
Preference number: 2 (lower is better)
Translates to: VVMRARCPWGRGAARCCAAWGSG*RKDGAA
Trigger: GGCAGCCCCATCCTTCCTCCAGCCACTACCCCAAGC...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCAGCAAGCTGGGGCCATaGGCCCCCACTGTAGCTTGG +
Preference number: 2 (lower is better)
Translates to: VVMRARCPWGRGAARCCASKLGP*APTVAW
Trigger: CCAAGCTACAGTGGGGGCCCATGGCCCCAGCTTGCT...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAAGCGCCCTGTGGCCCTaGCCAGCCGGCTCAGCTCTG +
Preference number: 2 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPSALWP*PAGSAL
Trigger: CAGAGCTGAGCCGGCTGGGCAGGGCCACAGGGCGCT...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGAGACCTCAGGGCCCTaGCTCTGCCGGAGCGCCCTG +
Preference number: 2 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRETSGP*LCRSAL
Trigger: CAGGGCGCTCCGGCAGAGGCAGGGCCCTGAGGTCTC...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGGGCCCCTCACCCCACTaGTCAGAGACCTCAGGGCCC +
Preference number: 2 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQGPSPH*SETSGP
Trigger: GGGCCCTGAGGTCTCTGAGCAGTGGGGTGAGGGGCC...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGCTCCGGGGCTCTGCGTaGGCCAGGCCGCTGTCCCGT +
Preference number: 2 (lower is better)
Translates to: QRAPLGSAATRAVKASPGLRGSA*ARPLSR
Trigger: ACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAG...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR-3UTR CCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCACTTGGCCGGGCTAACTaGGCAGGTGGGCGCCTCCGG +
Preference number: 2 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPLGRAN*AGGRLR
Trigger: CCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAG...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGCTTGGCCGGGCTAACTaGGCAGGTGGGCGCCTCCGG +
Preference number: 2 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQLGRAN*AGGRLR
Trigger: CCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAG...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGCTTGGCCGGGCTAACTaGGCAGGTGGGCGCCTCCGG +
Preference number: 2 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRLGRAN*AGGRLR
Trigger: CCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAG...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGCTCTGGTCCGCACCTTaGTCCTGCAGGGGCTGCCCG +
Preference number: 2 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQLWSAP*SCRGCP
Trigger: CGGGCAGCCCCTGCAGGACCAAGGTGCGGACCAGAG...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCCAGCCGGCTCAGCTCTaGCCCATCCTCAGCCGCTCT +
Preference number: 2 (lower is better)
Translates to: RCCAPVARGRHALGHWESQPAQL*PILSRS
Trigger: AGAGCGGCTGAGGATGGGCCAGAGCTGAGCCGGCTG...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCGGACTGGGAGGCGGATaGCACTCCCTGGTGCCCAAG +
Preference number: 2 (lower is better)
Translates to: RCCAPVARGRHALGHWESGLGGG*HSLVPK
Trigger: CTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCC...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR CAA 90 bp GGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTaGGCCGGGCTAACTGGGCAGGTGGGCGCCTCCGGGGGCCTCACA +
Preference number: 2 (lower is better)
Translates to: GLPSGLPEQQDSSVS*AGLTGQVGASGGLT
Trigger: TGTGAGGCCCCCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR-3UTR GCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATTCCGCACCTTGGTCCTaGAGGGGCTGCCCGCCAGGC +
Preference number: 2 (lower is better)
Translates to: APQWLGEGTRLDTGRASHSAPWS*RGCPPG
Trigger: GCCTGGCGGGCAGCCCCTGCAGGACCAAGGTGCGGA...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGCTCTGGTCCGCACCTTaGTCCTGCAGGGGCTGCCCG +
Preference number: 2 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRLWSAP*SCRGCP
Trigger: CGGGCAGCCCCTGCAGGACCAAGGTGCGGACCAGAG...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCTCTGGTCCGCACCTTaGTCCTGCAGGGGCTGCCCG +
Preference number: 2 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSLWSAP*SCRGCP
Trigger: CGGGCAGCCCCTGCAGGACCAAGGTGCGGACCAGAG...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGTGCCGGAGCGCCCTGTaGCCCTGCCCAGCCGGCTCA +
Preference number: 2 (lower is better)
Translates to: LALGKVGASPVNGVGRVVCRSAL*PCPAGS
Trigger: TGAGCCGGCTGGGCAGGGCCACAGGGCGCTCCGGCA...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGTCCGCACCTTGGTCCTaGAGGGGCTGCCCGCCAGGC +
Preference number: 2 (lower is better)
Translates to: LALGKVGASPVNGVGRVVSAPWS*RGCPPG
Trigger: GCCTGGCGGGCAGCCCCTGCAGGACCAAGGTGCGGA...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGAGACCTCAGGGCCCTaGCTCTGCCGGAGCGCCCTG +
Preference number: 2 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRETSGP*LCRSAL
Trigger: CAGGGCGCTCCGGCAGAGGCAGGGCCCTGAGGTCTC...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTCTTGGCCGGGCTAACTaGGCAGGTGGGCGCCTCCGG +
Preference number: 2 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRLGRAN*AGGRLR
Trigger: CCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAG...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGCTCTGGTCCGCACCTTaGTCCTGCAGGGGCTGCCCG +
Preference number: 2 (lower is better)
Translates to: QRAPLGSAATRAVKASPGLWSAP*SCRGCP
Trigger: CGGGCAGCCCCTGCAGGACCAAGGTGCGGACCAGAG...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGTGCCGGAGCGCCCTGTaGCCCTGCCCAGCCGGCTCA +
Preference number: 2 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWCRSAL*PCPAGS
Trigger: TGAGCCGGCTGGGCAGGGCCACAGGGCGCTCCGGCA...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGCGTGCTCCGGGGCTCTaGGTGGGCCAGGCCGCTGTC +
Preference number: 2 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWRAPGL*VGQAAV
Trigger: GACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACG...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR-3UTR CCA 90 bp GTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGCTTGGCCGGGCTAACTaGGCAGGTGGGCGCCTCCGG +
Preference number: 2 (lower is better)
Translates to: VKASPGKGRSQPSEWGGKLGRAN*AGGRLR
Trigger: CCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAG...CTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGCTTGGGGTAGTGGCTaGAGGAAGGATGGGGCTGCC +
Preference number: 2 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRAWGSG*RKDGAA
Trigger: GGCAGCCCCATCCTTCCTCCAGCCACTACCCCAAGC...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATGGTGACCTAGCAAGCTaGGGCCATGGGCCCCCACTG +
Preference number: 2 (lower is better)
Translates to: APQWLGEGTRLDTGRASHGDLAS*GHGPPL
Trigger: CAGTGGGGGCCCATGGCCCCAGCTTGCTAGGTCACC...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR CAA 90 bp GGGCAGCGCGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTaGGACACTGGGAGAGCTAGTCATGTACAAGGTTGGGTGAGTGAC +
Preference number: 2 (lower is better)
Translates to: GQRAAAPQWLGEGTR*DTGRASHVQGWVSD
Trigger: GTCACTCACCCAACCTTGTACATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCGCGCTGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAATGGTCCTGCAGGGGCTaGCCGCCAGGCAGCAGAGCA +
Preference number: 2 (lower is better)
Translates to: RAPLGSAATRAVKASPGKWSCRG*PPGSRA
Trigger: TGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCA...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAAGGGTGGGCAGTCTCTaGGGCGGGTGGGCTTCCCTC +
Preference number: 2 (lower is better)
Translates to: RAPLGSAATRAVKASPGKRVGSL*GGWASL
Trigger: GAGGGAAGCCCACCCGCCCCAGAGACTGCCCACCCT...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp GTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGAGGGTGGGCAGTCTCTaGGGCGGGTGGGCTTCCCTC +
Preference number: 2 (lower is better)
Translates to: VKASPGKGRSQPSEWGGKRVGSL*GGWASL
Trigger: GAGGGAAGCCCACCCGCCCCAGAGACTGCCCACCCT...CTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATAGCAAGCTGGGGCCATaGGCCCCCACTGTAGCTTGG +
Preference number: 2 (lower is better)
Translates to: APQWLGEGTRLDTGRASHSKLGP*APTVAW
Trigger: CCAAGCTACAGTGGGGGCCCATGGCCCCAGCTTGCT...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGGGTGACCTAGCAAGCTaGGGCCATGGGCCCCCACTG +
Preference number: 2 (lower is better)
Translates to: LALGKVGASPVNGVGRVVGDLAS*GHGPPL
Trigger: CAGTGGGGGCCCATGGCCCCAGCTTGCTAGGTCACC...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR TCA 90 bp TCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGGCTGACCGAGGGATCTaGGAGGTTGAGCGGGCCCGT +
Preference number: 2 (lower is better)
Translates to: SGLPEQQDSSVSLAGLTGADRGI*EVERAR
Trigger: ACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAGC...CCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR-3UTR GCA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCTCCGCACCTTGGTCCTaGAGGGGCTGCCCGCCAGGC +
Preference number: 2 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGASAPWS*RGCPPG
Trigger: GCCTGGCGGGCAGCCCCTGCAGGACCAAGGTGCGGA...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCGAGGAAGGATGGGGCTaGCATTTCTGCTCCAGGCTC +
Preference number: 2 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSEEGWG*HFCSRL
Trigger: GAGCCTGGAGCAGAAATGGCAGCCCCATCCTTCCTC...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGAGGAAGGATGGGGCTaGCATTTCTGCTCCAGGCTC +
Preference number: 2 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVREEGWG*HFCSRL
Trigger: GAGCCTGGAGCAGAAATGGCAGCCCCATCCTTCCTC...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCAGGTGGAAGTCAGGTTaGAGAGAGCAGGCGCTGGAG +
Preference number: 2 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSRWKSG*REQALE
Trigger: CTCCAGCGCCTGCTCTCTGCAACCTGACTTCCACCT...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGACTCCGGGGCTCTGCGTaGGCCAGGCCGCTGTCCCGT +
Preference number: 2 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARLRGSA*ARPLSR
Trigger: ACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAG...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR-3UTR CCA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCATGCCGGAGCGCCCTGTaGCCCTGCCCAGCCGGCTCA +
Preference number: 2 (lower is better)
Translates to: RREGSALLESGALDIWEPCRSAL*PCPAGS
Trigger: TGAGCCGGCTGGGCAGGGCCACAGGGCGCTCCGGCA...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGCTTGGGGTAGTGGCTaGAGGAAGGATGGGGCTGCC +
Preference number: 2 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRAWGSG*RKDGAA
Trigger: GGCAGCCCCATCCTTCCTCCAGCCACTACCCCAAGC...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGAGCAAGCTGGGGCCATaGGCCCCCACTGTAGCTTGG +
Preference number: 2 (lower is better)
Translates to: LALGKVGASPVNGVGRVVSKLGP*APTVAW
Trigger: CCAAGCTACAGTGGGGGCCCATGGCCCCAGCTTGCT...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTGACCTAGCAAGCTaGGGCCATGGGCCCCCACTG +
Preference number: 2 (lower is better)
Translates to: RAPLGSAATRAVKASPGKGDLAS*GHGPPL
Trigger: CAGTGGGGGCCCATGGCCCCAGCTTGCTAGGTCACC...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAAGCGCCCTGTGGCCCTaGCCAGCCGGCTCAGCTCTG +
Preference number: 2 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARSALWP*PAGSAL
Trigger: CAGAGCTGAGCCGGCTGGGCAGGGCCACAGGGCGCT...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCGGCCCCTCACCCCACTaGTCAGAGACCTCAGGGCCC +
Preference number: 2 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGAGPSPH*SETSGP
Trigger: GGGCCCTGAGGTCTCTGAGCAGTGGGGTGAGGGGCC...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATGAGGAAGGATGGGGCTaGCATTTCTGCTCCAGGCTC +
Preference number: 2 (lower is better)
Translates to: APQWLGEGTRLDTGRASHEEGWG*HFCSRL
Trigger: GAGCCTGGAGCAGAAATGGCAGCCCCATCCTTCCTC...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAACATCCTCAGCCGCTCTaGTCCGCACCTTGGTCCTGC +
Preference number: 2 (lower is better)
Translates to: RAPLGSAATRAVKASPGKHPQPL*SAPWSC
Trigger: GCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATG...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGATGCCGGAGCGCCCTGTaGCCCTGCCCAGCCGGCTCA +
Preference number: 2 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGCRSAL*PCPAGS
Trigger: TGAGCCGGCTGGGCAGGGCCACAGGGCGCTCCGGCA...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGCTTGGGGTAGTGGCTaGAGGAAGGATGGGGCTGCC +
Preference number: 2 (lower is better)
Translates to: RAPLGSAATRAVKASPGKAWGSG*RKDGAA
Trigger: GGCAGCCCCATCCTTCCTCCAGCCACTACCCCAAGC...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAAGCAAGCTGGGGCCATaGGCCCCCACTGTAGCTTGG +
Preference number: 2 (lower is better)
Translates to: RAPLGSAATRAVKASPGKSKLGP*APTVAW
Trigger: CCAAGCTACAGTGGGGGCCCATGGCCCCAGCTTGCT...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCAGCCCTCTTGGAGTCTaGAGCCCTAGACATCTGGGA +
Preference number: 2 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSSPLGV*SPRHLG
Trigger: TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR TCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAACTCACACCACGGTGCTaGCCGAGGGATCTGAGAGGT +
Preference number: 2 (lower is better)
Translates to: RAPLGSAATRAVKASPGKLTPRC*PRDLRG
Trigger: ACCTCTCAGATCCCTCGGTCAGCACCGTGGTGTGAG...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR-3UTR TCA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGCTGCCACTAGGGCAGTaGAGGCTAGCCCTGGGAAAG +
Preference number: 2 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWLPLGQ*RLALGK
Trigger: CTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAG...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAAGCGCCCTGTGGCCCTaGCCAGCCGGCTCAGCTCTG +
Preference number: 2 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGSALWP*PAGSAL
Trigger: CAGAGCTGAGCCGGCTGGGCAGGGCCACAGGGCGCT...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGAGACCTCAGGGCCCTaGCTCTGCCGGAGCGCCCTG +
Preference number: 2 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGETSGP*LCRSAL
Trigger: CAGGGCGCTCCGGCAGAGGCAGGGCCCTGAGGTCTC...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGAGGTGGAAGTCAGGTTaGAGAGAGCAGGCGCTGGAG +
Preference number: 2 (lower is better)
Translates to: LALGKVGASPVNGVGRVVRWKSG*REQALE
Trigger: CTCCAGCGCCTGCTCTCTGCAACCTGACTTCCACCT...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGACTTGGCCGGGCTAACTaGGCAGGTGGGCGCCTCCGG +
Preference number: 2 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGLGRAN*AGGRLR
Trigger: CCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAG...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCACTCTGGTCCGCACCTTaGTCCTGCAGGGGCTGCCCG +
Preference number: 2 (lower is better)
Translates to: RREGSALLESGALDIWEPLWSAP*SCRGCP
Trigger: CGGGCAGCCCCTGCAGGACCAAGGTGCGGACCAGAG...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAAGGGTGGGCAGTCTCTaGGGCGGGTGGGCTTCCCTC +
Preference number: 2 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGRVGSL*GGWASL
Trigger: GAGGGAAGCCCACCCGCCCCAGAGACTGCCCACCCT...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGAGGAAGGATGGGGCTaGCATTTCTGCTCCAGGCTC +
Preference number: 2 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWEEGWG*HFCSRL
Trigger: GAGCCTGGAGCAGAAATGGCAGCCCCATCCTTCCTC...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCACATCCTCAGCCGCTCTaGTCCGCACCTTGGTCCTGC +
Preference number: 2 (lower is better)
Translates to: RREGSALLESGALDIWEPHPQPL*SAPWSC
Trigger: GCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATG...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGACATCCTCAGCCGCTCTaGTCCGCACCTTGGTCCTGC +
Preference number: 2 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARHPQPL*SAPWSC
Trigger: GCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATG...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR CAA 90 bp CTCCGGGGGCCTCACACCACGGTGCTGACCGAGGGATCTGAGAGGTaGAGCGGGCCCGTGATATCAGTGGGATGGTACTGCTGTAAAATA +
Preference number: 2 (lower is better)
Translates to: LRGPHTTVLTEGSER*SGPVISVGWYCCKI
Trigger: TATTTTACAGCAGTACCATCCCACTGATATCACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAGCACCGTGGTGTGAGGCCCCCGGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR-3UTR TCA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCTCACACCACGGTGCTaGCCGAGGGATCTGAGAGGT +
Preference number: 2 (lower is better)
Translates to: DRREGSALLESGALDIWELTPRC*PRDLRG
Trigger: ACCTCTCAGATCCCTCGGTCAGCACCGTGGTGTGAG...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR-3UTR GCA 90 bp CTTGGCCGGGCTAACTGGGCAGGTGGGCGCCTCCGGGGGCCTCACACCACGGTGTCAGTGGGATGGTACTaGTGTAAAATAGAAATACAC +
Preference number: 2 (lower is better)
Translates to: LGRANWAGGRLRGPHTTVSVGWY*CKIEIH
Trigger: GTGTATTTCTATTTTACAGCAGTACCATCCCACTGA...CACCGTGGTGTGAGGCCCCCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR-3UTR CCA 90 bp CTTGGCCGGGCTAACTGGGCAGGTGGGCGCCTCCGGGGGCCTCACACCACGGTGGTGATATCAGTGGGATaGTACTGCTGTAAAATAGAA +
Preference number: 2 (lower is better)
Translates to: LGRANWAGGRLRGPHTTVVISVG*YCCKIE
Trigger: TTCTATTTTACAGCAGTACCATCCCACTGATATCAC...CACCGTGGTGTGAGGCCCCCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR CAA 90 bp GTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGGGAGGATaGTGCAGCAGGAGAGAAAGAGAGATAGAGGTGGAAGTCAGGTTG +
Preference number: 2 (lower is better)
Translates to: VGASPVNGVGRVVGG*CSRREREIEVEVRL
Trigger: CAACCTGACTTCCACCTCTATCTCTCTTTCTCTCCTGCTGCACAATCCTCCCACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR GCA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGTCAGTGGGATGGTACTaGTGTAAAATAGAAATACAC +
Preference number: 2 (lower is better)
Translates to: DRREGSALLESGALDIWESVGWY*CKIEIH
Trigger: GTGTATTTCTATTTTACAGCAGTACCATCCCACTGA...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR CCA 72 bp GCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTaGGCAGTCTCTGGGGCGGGTGGGCTTCCCTCAGGC +
Preference number: 3 (lower is better)
Translates to: ARQQSRRTGGPG*AVSGAGGLPSG
Trigger: GCCTGAGGGAAGCCCACCCGCCCCAGAGACTGCCCACCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR GCA 72 bp TCACCCCACTGCTCAGAGACCTCAGGGCCCTGCCTCTaGCGGAGCGCCCTGTGGCCCTGCCCAGCCGGCTCA +
Preference number: 3 (lower is better)
Translates to: SPHCSETSGPCL*RSALWPCPAGS
Trigger: TGAGCCGGCTGGGCAGGGCCACAGGGCGCTCCGGCAGAGGCAGGGCCCTGAGGTCTCTGAGCAGTGGGGTGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR CCA 72 bp GACGGGAGGCCCAGGGTGGGCAGTCTCTGGGGCGGGTaGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTC +
Preference number: 3 (lower is better)
Translates to: DGRPRVGSLWGG*ASLRPSRAAGL
Trigger: GAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACCCGCCCCAGAGACTGCCCACCCTGGGCCTCCCGTC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR GCA 72 bp GCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTaGAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGA +
Preference number: 3 (lower is better)
Translates to: AHPQPLWSAPWS*RGCPPGSRAGG
Trigger: TCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR CCA 72 bp GCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTaGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCA +
Preference number: 3 (lower is better)
Translates to: ALAHPQPLWSAP*SCRGCPPGSRA
Trigger: TGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CAA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGCTCTGGTCCGCACCTaGGTCCTGCAGGGGCTGCCC +
Preference number: 3 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPALVRT*VLQGLP
Trigger: GGGCAGCCCCTGCAGGACCAAGGTGCGGACCAGAGC...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CAA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATGCTCTGGTCCGCACCTaGGTCCTGCAGGGGCTGCCC +
Preference number: 3 (lower is better)
Translates to: APQWLGEGTRLDTGRASHALVRT*VLQGLP
Trigger: GGGCAGCCCCTGCAGGACCAAGGTGCGGACCAGAGC...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR CCA 72 bp GCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTaGGCAGGTGGGCGCCTCCGGGGGCCTCACACCACG +
Preference number: 3 (lower is better)
Translates to: AAGLISVLGRAN*AGGRLRGPHTT
Trigger: CGTGGTGTGAGGCCCCCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR-3UTR CAA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCAGGGTCGTGGGAGGATaGTGCAGCAGGAGAGAAAGA +
Preference number: 3 (lower is better)
Translates to: VVMRARCPWGRGAARCCARVVGG*CSRRER
Trigger: TCTTTCTCTCCTGCTGCACAATCCTCCCACGACCCT...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CAA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGCTCTGGTCCGCACCTaGGTCCTGCAGGGGCTGCCC +
Preference number: 3 (lower is better)
Translates to: RAPLGSAATRAVKASPGKALVRT*VLQGLP
Trigger: GGGCAGCCCCTGCAGGACCAAGGTGCGGACCAGAGC...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR CCA 72 bp CAAGGTTGGGTGAGTGACACCGGACTGGGAGGCGGATaGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCT +
Preference number: 3 (lower is better)
Translates to: QGWVSDTGLGGG*HSLVPKVRGSS
Trigger: AGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCACCCAACCTTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CAA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGACTCATCAGTGTCCTaGGCCGGGCTAACTGGGCAG +
Preference number: 3 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRDSSVS*AGLTGQ
Trigger: CTGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTC...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CAA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCGACTCATCAGTGTCCTaGGCCGGGCTAACTGGGCAG +
Preference number: 3 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSDSSVS*AGLTGQ
Trigger: CTGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTC...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CAA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGACTCATCAGTGTCCTaGGCCGGGCTAACTGGGCAG +
Preference number: 3 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPDSSVS*AGLTGQ
Trigger: CTGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTC...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR TCA 72 bp CCGGGGGCCTCACACCACGGTGCTGACCGAGGGATCTaGGAGGTTGAGCGGGCCCGTGATATCAGTGGGATG +
Preference number: 3 (lower is better)
Translates to: PGASHHGADRGI*EVERARDISGM
Trigger: CATCCCACTGATATCACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAGCACCGTGGTGTGAGGCCCCCGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR TCA 72 bp AGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTaGAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCA +
Preference number: 3 (lower is better)
Translates to: REHPWEALPLGQ*RLALGKVGASP
Trigger: TGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CAA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGAGGGATCTGAGAGGTaGAGCGGGCCCGTGATATCA +
Preference number: 3 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVREGSER*SGPVIS
Trigger: TGATATCACGGGCCCGCTCAACCTCTCAGATCCCTC...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR-3UTR CAA 90 bp GTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGACTCATCAGTGTCCTaGGCCGGGCTAACTGGGCAG +
Preference number: 3 (lower is better)
Translates to: VKASPGKGRSQPSEWGGKDSSVS*AGLTGQ
Trigger: CTGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTC...CTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR-3UTR CAA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGAGGTGGAAGTCAGGTaGCAGAGAGCAGGCGCTGGA +
Preference number: 3 (lower is better)
Translates to: RAPLGSAATRAVKASPGKEVEVR*QRAGAG
Trigger: TCCAGCGCCTGCTCTCTGCAACCTGACTTCCACCTC...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR TCA 72 bp GTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGCGTCTaGGGAAGCCTATTGTGGCTGCAGACAGAAGAGAAG +
Preference number: 3 (lower is better)
Translates to: VPKVRGSSQASV*GSLLWLQTEEK
Trigger: CTTCTCTTCTGTCTGCAGCCACAATAGGCTTCCTCAGACGCTGGCTTGAGAGGAGCCCCGCACCTTGGGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR CCA 72 bp TGCAGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTaGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCC +
Preference number: 3 (lower is better)
Translates to: CRQKRRLSPLGV*SPRHLGAREHP
Trigger: GGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR GCA 72 bp CCTCTCAAGCCAGCGTCTGAGGAAGCCTATTGTGGCTaGAGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTC +
Preference number: 3 (lower is better)
Translates to: PLKPASEEAYCG*RQKRRLSPLGV
Trigger: GACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCTGCAGCCACAATAGGCTTCCTCAGACGCTGGCTTGAGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR GCA 72 bp AGGTTGAGCGGGCCCGTGATATCAGTGGGATGGTACTaGTGTAAAATAGAAATACACAGACAAGGCGGCCCG +
Preference number: 3 (lower is better)
Translates to: RLSGPVISVGWY*CKIEIHRQGGP
Trigger: CGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCAGTACCATCCCACTGATATCACGGGCCCGCTCAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR CCA 72 bp TCTGAGAGGTTGAGCGGGCCCGTGATATCAGTGGGATaGTACTGCTGTAAAATAGAAATACACAGACAAGGC +
Preference number: 3 (lower is better)
Translates to: SERLSGPVISVG*YCCKIEIHRQG
Trigger: GCCTTGTCTGTGTATTTCTATTTTACAGCAGTACCATCCCACTGATATCACGGGCCCGCTCAACCTCTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCGTCTCCAGGCGCTTCTaGGCTGCCCGGCCCTCGTGG +
Preference number: 4 (lower is better)
Translates to: GYARPVSLGQRGSALLRPVSRRF*AARPSW
Trigger: CCACGAGGGCCGGGCAGCGCAGAAGCGCCTGGAGAC...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCGTCTCCAGGCGCTTCTaGGCTGCCCGGCCCTCGTGG +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCAVSRRF*AARPSW
Trigger: CCACGAGGGCCGGGCAGCGCAGAAGCGCCTGGAGAC...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCGCTGCCCGGCCCTCGTaGTCATCGCTGACCAGCAGG +
Preference number: 4 (lower is better)
Translates to: GYARPVSLGQRGSALLRPAARPS*SSLTSR
Trigger: CCTGCTGGTCAGCGATGACCACGAGGGCCGGGCAGC...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGGGTGGGCCTCGCGGAACATCTaGTCGTGCTTGCGCGTGCTC +
Preference number: 4 (lower is better)
Translates to: RRPVSSDVGGTRGAGTGWASRNI*SCLRVL
Trigger: GAGCACGCGCAAGCACGAGCAGATGTTCCGCGAGGC...CCACCCTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCT
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp GTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGCAGGCGCTTCTGCGCTaGCCGGCCCTCGTGGTCATC +
Preference number: 4 (lower is better)
Translates to: VLQGLPARQQSRRTGGPGQALLR*PALVVI
Trigger: GATGACCACGAGGGCCGGGCAGCGCAGAAGCGCCTG...CCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGAC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTGTCTCCAGGCGCTTCTaGGCTGCCCGGCCCTCGTGG +
Preference number: 4 (lower is better)
Translates to: SCRGCPPGSRAGGREAQGVSRRF*AARPSW
Trigger: CCACGAGGGCCGGGCAGCGCAGAAGCGCCTGGAGAC...ACCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTTGGCCGGGCTAACTGGGCAGGTGGGCGCCTCCGGGGGCCTCACACCACGGTGGTCTCCAGGCGCTTCTaGGCTGCCCGGCCCTCGTGG +
Preference number: 4 (lower is better)
Translates to: LGRANWAGGRLRGPHTTVVSRRF*AARPSW
Trigger: CCACGAGGGCCGGGCAGCGCAGAAGCGCCTGGAGAC...CACCGTGGTGTGAGGCCCCCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAG
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp CGACCCCGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCCTCGTGGACTGCCTGTaGCACCACGCCCACAGCGTC +
Preference number: 4 (lower is better)
Translates to: RPRRAPGLCVGQAAVPCVLVDCL*HHAHSV
Trigger: GACGCTGTGGGCGTGGTGGCACAGGCAGTCCACGAG...GACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACGGGGTCG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCGCTGACCGAGGGATCTaGGAGGTTGAGCGGGCCCGT +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCAADRGI*EVERAR
Trigger: ACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAGC...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTGCTGCCCGGCCCTCGTaGTCATCGCTGACCAGCAGG +
Preference number: 4 (lower is better)
Translates to: SCRGCPPGSRAGGREAQGAARPS*SSLTSR
Trigger: CCTGCTGGTCAGCGATGACCACGAGGGCCGGGCAGC...ACCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGGCTGCCCGGCCCTCGTaGTCATCGCTGACCAGCAGG +
Preference number: 4 (lower is better)
Translates to: RRAPGLCVGQAAVPCVCLAARPS*SSLTSR
Trigger: CCTGCTGGTCAGCGATGACCACGAGGGCCGGGCAGC...CAGACAGACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp AGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGGCACCGCGCCGATGTTaGCAATCTTGGGGTCGCAGG +
Preference number: 4 (lower is better)
Translates to: RQGGPLAPTSGARAGPGQAPRRC*QSWGRR
Trigger: CCTGCGACCCCAAGATTGTCAACATCGGCGCGGTGC...CTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCTTGTCT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCACTGGGGCACTGTGTaGCGTGGGCTTCCTGGGGAT +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCAHWGTV*RGLPGD
Trigger: ATCCCCAGGAAGCCCACGTCACACAGTGCCCCAGTG...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCCCCCAATGCCAGAGTTaGGCAGGACGCCCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: GYARPVSLGQRGSALLRPPQCQS*AGRPRK
Trigger: TTTCCTGGGGCGTCCTGCTCAACTCTGGCATTGGGG...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
71% GC, longest homopolymer 8 nt, total homopolymer stretches 20 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCCGGAACATCTGCTCGTaGTTGCGCGTGCTCAGCACC +
Preference number: 4 (lower is better)
Translates to: GYARPVSLGQRGSALLRPRNICS*LRVLST
Trigger: GGTGCTGAGCACGCGCAAGCACGAGCAGATGTTCCG...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGGCCTCGCGGAACATCTaGTCGTGCTTGCGCGTGCTC +
Preference number: 4 (lower is better)
Translates to: VLQGLPARQQSRRTGGPGASRNI*SCLRVL
Trigger: GAGCACGCGCAAGCACGAGCAGATGTTCCGCGAGGC...CCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGCGGGGGAGGGGCAGAGGAGGGGCCTCGCGGAACATCTaGTCGTGCTTGCGCGTGCTC +
Preference number: 4 (lower is better)
Translates to: VGQAAVPCVCLRGRGRGGASRNI*SCLRVL
Trigger: GAGCACGCGCAAGCACGAGCAGATGTTCCGCGAGGC...CCCTCCTCTGCCCCTCCCCCGCAGACAGACGCACGGGACAGCGGCCTGGCCCAC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp AGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGGCCTCGCGGAACATCTaGTCGTGCTTGCGCGTGCTC +
Preference number: 4 (lower is better)
Translates to: RQGGPLAPTSGARAGPGQASRNI*SCLRVL
Trigger: GAGCACGCGCAAGCACGAGCAGATGTTCCGCGAGGC...CTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCTTGTCT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp CGACCCCGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCTCCAGATGTTGGTGTTaGCCACGCAACCCCGCGGTG +
Preference number: 4 (lower is better)
Translates to: RPRRAPGLCVGQAAVPCVSRCWC*PRNPAV
Trigger: CACCGCGGGGTTGCGTGGGCAACACCAACATCTGGA...GACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACGGGGTCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCTCCAGGGGCTGTCCTTaGGCATGCCGATGCCAAAGC +
Preference number: 4 (lower is better)
Translates to: GYARPVSLGQRGSALLRPSRGCP*ACRCQS
Trigger: GCTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGA...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGCGGGGGAGGGGCAGAGGAGGGGGGGTGGGAGTGAAGTaGTCGTTGGGAGTAGGCGGG +
Preference number: 4 (lower is better)
Translates to: VGQAAVPCVCLRGRGRGGGVGVK*SLGVGG
Trigger: CCCGCCTACTCCCAACGACCACTTCACTCCCACCCC...CCCTCCTCTGCCCCTCCCCCGCAGACAGACGCACGGGACAGCGGCCTGGCCCAC
71% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR CAA 72 bp AGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTaGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGC +
Preference number: 4 (lower is better)
Translates to: SSGPSSAALVRT*VLQGLPARQQS
Trigger: GCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCGCACCGCGCCGATGTTaGCAATCTTGGGGTCGCAGG +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPAPRRC*QSWGRR
Trigger: CCTGCGACCCCAAGATTGTCAACATCGGCGCGGTGC...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGCGGGGGAGGGGCAGAGGAGGGCCCCAATGCCAGAGTTaGGCAGGACGCCCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: VGQAAVPCVCLRGRGRGGPQCQS*AGRPRK
Trigger: TTTCCTGGGGCGTCCTGCTCAACTCTGGCATTGGGG...CCCTCCTCTGCCCCTCCCCCGCAGACAGACGCACGGGACAGCGGCCTGGCCCAC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCCCAATGCCAGAGTTaGGCAGGACGCCCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCAPQCQS*AGRPRK
Trigger: TTTCCTGGGGCGTCCTGCTCAACTCTGGCATTGGGG...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
70% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCGGAACATCTGCTCGTaGTTGCGCGTGCTCAGCACC +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCARNICS*LRVLST
Trigger: GGTGCTGAGCACGCGCAAGCACGAGCAGATGTTCCG...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTGCCTCGCGGAACATCTaGTCGTGCTTGCGCGTGCTC +
Preference number: 4 (lower is better)
Translates to: SCRGCPPGSRAGGREAQGASRNI*SCLRVL
Trigger: GAGCACGCGCAAGCACGAGCAGATGTTCCGCGAGGC...ACCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCGCCTCGCGGAACATCTaGTCGTGCTTGCGCGTGCTC +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPASRNI*SCLRVL
Trigger: GAGCACGCGCAAGCACGAGCAGATGTTCCGCGAGGC...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGGGTGGAGCGTCGTCCTCGCTTaGAGAAAGGATGATGACCCG +
Preference number: 4 (lower is better)
Translates to: RRPVSSDVGGTRGAGTGWSVVLA*RKDDDP
Trigger: CGGGTCATCATCCTTTCTGCAAGCGAGGACGACGCT...CCACCCTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp CGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGGTTCAGCATCGCGGCTaGGCGGTATACGGTGGCAGC +
Preference number: 4 (lower is better)
Translates to: RRAPGLCVGQAAVPCVCLVQHRG*AVYGGS
Trigger: GCTGCCACCGTATACCGCGCAGCCGCGATGCTGAAC...CAGACAGACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp TCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTGTTCAGCATCGCGGCTaGGCGGTATACGGTGGCAGC +
Preference number: 4 (lower is better)
Translates to: SCRGCPPGSRAGGREAQGVQHRG*AVYGGS
Trigger: GCTGCCACCGTATACCGCGCAGCCGCGATGCTGAAC...ACCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGCCACCCCCGGTGCTCTaGAGGTTCTTCCTCCACACG +
Preference number: 4 (lower is better)
Translates to: RRAPGLCVGQAAVPCVCLPPPVL*RFFLHT
Trigger: CGTGTGGAGGAAGAACCTGCAGAGCACCGGGGGTGG...CAGACAGACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114307.8
ENSMUST00000114308.10
CDS-3UTR CCA 90 bp TCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTGGGGTGGGAGTGAAGTaGTCGTTGGGAGTAGGCGGG +
Preference number: 4 (lower is better)
Translates to: SCRGCPPGSRAGGREAQGGVGVK*SLGVGG
Trigger: CCCGCCTACTCCCAACGACCACTTCACTCCCACCCC...ACCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCGGGGTGGGAGTGAAGTaGTCGTTGGGAGTAGGCGGG +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPGVGVK*SLGVGG
Trigger: CCCGCCTACTCCCAACGACCACTTCACTCCCACCCC...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CTTGGCCGGGCTAACTGGGCAGGTGGGCGCCTCCGGGGGCCTCACACCACGGTGCTGCGCGGTATACGGTaGCAGCGTCGTCCTCGCTTG +
Preference number: 4 (lower is better)
Translates to: LGRANWAGGRLRGPHTTVLRGIR*QRRPRL
Trigger: CAAGCGAGGACGACGCTGCCACCGTATACCGCGCAG...CACCGTGGTGTGAGGCCCCCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCCACTGGGGCACTGTGTaGCGTGGGCTTCCTGGGGAT +
Preference number: 4 (lower is better)
Translates to: RCCAPVARGRHALGHWESHWGTV*RGLPGD
Trigger: ATCCCCAGGAAGCCCACGTCACACAGTGCCCCAGTG...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGGGTGGTCAGGCCCTGGTACTTaGAGGGCTTGGAGAACTCTA +
Preference number: 4 (lower is better)
Translates to: RRPVSSDVGGTRGAGTGWSGPGT*RAWRTL
Trigger: TAGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGA...CCACCCTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCATCACGGCCACCACATaGACTGACAGCCCCACCAGC +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPITATT*TDSPTS
Trigger: GCTGGTGGGGCTGTCAGTTCATGTGGTGGCCGTGAT...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGGGTGGCAGATCGCACTTCTGTaGAGCCTCAAACTCCAGCAC +
Preference number: 4 (lower is better)
Translates to: RRPVSSDVGGTRGAGTGWQIALL*SLKLQH
Trigger: GTGCTGGAGTTTGAGGCTTCACAGAAGTGCGATCTG...CCACCCTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGGCTCGTGCTTGCGCGTaGTCAGCACCGCGCCGATGT +
Preference number: 4 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQARACA*SAPRRC
Trigger: ACATCGGCGCGGTGCTGAGCACGCGCAAGCACGAGC...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCGCCTCGCGGAACATCTaGTCGTGCTTGCGCGTGCTC +
Preference number: 4 (lower is better)
Translates to: RCCAPVARGRHALGHWESASRNI*SCLRVL
Trigger: GAGCACGCGCAAGCACGAGCAGATGTTCCGCGAGGC...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGCAGGCGCTTCTGCGCTaGCCGGCCCTCGTGGTCATC +
Preference number: 4 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQQALLR*PALVVI
Trigger: GATGACCACGAGGGCCGGGCAGCGCAGAAGCGCCTG...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCCAGGCGCTTCTGCGCTaGCCGGCCCTCGTGGTCATC +
Preference number: 4 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGQALLR*PALVVI
Trigger: GATGACCACGAGGGCCGGGCAGCGCAGAAGCGCCTG...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCAGCGTCGTCCTCGCTTaGAGAAAGGATGATGACCCG +
Preference number: 4 (lower is better)
Translates to: GYARPVSLGQRGSALLRPSVVLA*RKDDDP
Trigger: CGGGTCATCATCCTTTCTGCAAGCGAGGACGACGCT...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCTCCAGATGTTGGTGTTaGCCACGCAACCCCGCGGTG +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPSRCWC*PRNPAV
Trigger: CACCGCGGGGTTGCGTGGGCAACACCAACATCTGGA...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCAGAGGACAGGGTCAGTaGATCCTCCTCCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCARGQGQ*ILLLLL
Trigger: GAGGAGGAGGAGGAGGATGCACTGACCCTGTCCTCT...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGTGTGCCGGTACATGGTaGTCAACTCCACCTGCCTCC +
Preference number: 4 (lower is better)
Translates to: RQGGPLAPTSGARAGPGQCAGTW*STPPAS
Trigger: GGAGGCAGGTGGAGTTGAGCACCATGTACCGGCACA...CTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCTTGTCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCTGTGCCGGTACATGGTaGTCAACTCCACCTGCCTCC +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCACAGTW*STPPAS
Trigger: GGAGGCAGGTGGAGTTGAGCACCATGTACCGGCACA...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCCCTTGCGCATGCCGATaGCAAAGCCGGAGCGGAAGA +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPPCACR*QSRSGR
Trigger: TCTTCCGCTCCGGCTTTGGCATCGGCATGCGCAAGG...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTCCTTGCGCATGCCGATaGCAAAGCCGGAGCGGAAGA +
Preference number: 4 (lower is better)
Translates to: SCRGCPPGSRAGGREAQGPCACR*QSRSGR
Trigger: TCTTCCGCTCCGGCTTTGGCATCGGCATGCGCAAGG...ACCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCTCCAGGGGCTGTCCTTaGGCATGCCGATGCCAAAGC +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPSRGCP*ACRCQS
Trigger: GCTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGA...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CGACCCCGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCCCACACGTTCACGGCTaGAAAAGCCAGCTGCATCTG +
Preference number: 4 (lower is better)
Translates to: RPRRAPGLCVGQAAVPCVPHVHG*KSQLHL
Trigger: CAGATGCAGCTGGCTTTTGCAGCCGTGAACGTGTGG...GACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACGGGGTCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCCCACACGTTCACGGCTaGAAAAGCCAGCTGCATCTG +
Preference number: 4 (lower is better)
Translates to: GYARPVSLGQRGSALLRPPHVHG*KSQLHL
Trigger: CAGATGCAGCTGGCTTTTGCAGCCGTGAACGTGTGG...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
69% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCATGGCGTTGGGCTTGTaGGTGACAGAAGTGGCGTTG +
Preference number: 4 (lower is better)
Translates to: GYARPVSLGQRGSALLRPMALGL*VTEVAL
Trigger: CAACGCCACTTCTGTCACCCACAAGCCCAACGCCAT...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCTGGTGGGAGTAGGGTaGTACGGTGCGAAGGAAGCT +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCALVGVG*YGAKEA
Trigger: AGCTTCCTTCGCACCGTACCACCCTACTCCCACCAG...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGCTGCCCGGCCCTCGTaGTCATCGCTGACCAGCAGG +
Preference number: 4 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPAARPS*SSLTSR
Trigger: CCTGCTGGTCAGCGATGACCACGAGGGCCGGGCAGC...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGACAGCGTCACTGATGTaGGCCGACTCGTTCTTGCCG +
Preference number: 4 (lower is better)
Translates to: VLQGLPARQQSRRTGGPGTASLM*ADSFLP
Trigger: CGGCAAGAACGAGTCGGCCCACATCAGTGACGCTGT...CCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGGGAAGGCTGCCAGGTTaGCAGTGTAGGAAGCCACGA +
Preference number: 4 (lower is better)
Translates to: VLQGLPARQQSRRTGGPGGRLPG*QCRKPR
Trigger: TCGTGGCTTCCTACACTGCCAACCTGGCAGCCTTCC...CCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGAC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCGGAAGGCTGCCAGGTTaGCAGTGTAGGAAGCCACGA +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCAGRLPG*QCRKPR
Trigger: TCGTGGCTTCCTACACTGCCAACCTGGCAGCCTTCC...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGCCCGCACAGCCTGGATaGCCTCAGCTGCACTCTCAT +
Preference number: 4 (lower is better)
Translates to: RRAPGLCVGQAAVPCVCLPAQPG*PQLHSH
Trigger: ATGAGAGTGCAGCTGAGGCCATCCAGGCTGTGCGGG...CAGACAGACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCGAACACAGCTGCAGCTaGCCCTCCTCCCTCTCAATA +
Preference number: 4 (lower is better)
Translates to: GYARPVSLGQRGSALLRPEHSCS*PSSLSI
Trigger: TATTGAGAGGGAGGAGGGCCAGCTGCAGCTGTGTTC...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp CGACCCCGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCGAACACAGCTGCAGCTaGCCCTCCTCCCTCTCAATA +
Preference number: 4 (lower is better)
Translates to: RPRRAPGLCVGQAAVPCVEHSCS*PSSLSI
Trigger: TATTGAGAGGGAGGAGGGCCAGCTGCAGCTGTGTTC...GACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACGGGGTCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp AGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGGGTGGATAGATGAACTTGTCTaGGGGGTTTCTGAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: RRPVSSDVGGTRGAGTGWIDELV*GVSEPG
Trigger: CCCAGGCTCAGAAACCCCTCAGACAAGTTCATCTAT...CCACCCTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCAAACTCCAGCACAGCTaGGTCCCAGATGAAGGCATG +
Preference number: 4 (lower is better)
Translates to: GYARPVSLGQRGSALLRPKLQHS*VPDEGM
Trigger: CATGCCTTCATCTGGGACTCAGCTGTGCTGGAGTTT...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGCTGACCGAGGGATCTaGGAGGTTGAGCGGGCCCGT +
Preference number: 4 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPADRGI*EVERAR
Trigger: ACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAGC...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCATTGGCCTGGTTTACTaGCTCGCGGAACATCTGCTC +
Preference number: 4 (lower is better)
Translates to: GYARPVSLGQRGSALLRPIGLVY*LAEHLL
Trigger: GAGCAGATGTTCCGCGAGGCAGTAAACCAGGCCAAT...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGAGTAGGGTGGTACGGTaGGAAGGAAGCTCAGGTGGA +
Preference number: 4 (lower is better)
Translates to: VLQGLPARQQSRRTGGPGSRVVR*EGSSGG
Trigger: TCCACCTGAGCTTCCTTCGCACCGTACCACCCTACT...CCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTGTCTCCAGGCGCTTCTaGGCTGCCCGGCCCTCGTGG +
Preference number: 4 (lower is better)
Translates to: APLGSAATRAVKASPGKGVSRRF*AARPSW
Trigger: CCACGAGGGCCGGGCAGCGCAGAAGCGCCTGGAGAC...ACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGGTCTCCAGGCGCTTCTaGGCTGCCCGGCCCTCGTGG +
Preference number: 4 (lower is better)
Translates to: LALGKVGASPVNGVGRVVVSRRF*AARPSW
Trigger: CCACGAGGGCCGGGCAGCGCAGAAGCGCCTGGAGAC...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGAGCGTCGTCCTCGCTTaGAGAAAGGATGATGACCCG +
Preference number: 4 (lower is better)
Translates to: RQGGPLAPTSGARAGPGQSVVLA*RKDDDP
Trigger: CGGGTCATCATCCTTTCTGCAAGCGAGGACGACGCT...CTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCTTGTCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp CGACCCCGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCGCCAAACTTGCCATCTaGCACAAGGTGCACCTCGTA +
Preference number: 4 (lower is better)
Translates to: RPRRAPGLCVGQAAVPCVAKLAI*HKVHLV
Trigger: TACGAGGTGCACCTTGTGGCAGATGGCAAGTTTGGC...GACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACGGGGTCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCTTACCCGCTCCTGTGTaGCAAACTTGCCATCTGCCA +
Preference number: 4 (lower is better)
Translates to: GYARPVSLGQRGSALLRPLPAPV*QTCHLP
Trigger: TGGCAGATGGCAAGTTTGGCACACAGGAGCGGGTAA...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCTGTGCCGGTACATGGTaGTCAACTCCACCTGCCTCC +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPCAGTW*STPPAS
Trigger: GGAGGCAGGTGGAGTTGAGCACCATGTACCGGCACA...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCACACGTTCACGGCTaGAAAAGCCAGCTGCATCTG +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCAPHVHG*KSQLHL
Trigger: CAGATGCAGCTGGCTTTTGCAGCCGTGAACGTGTGG...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCGTGTCTTTTTGGTTTTaGAAAGCGCCGCGTCCACCC +
Preference number: 4 (lower is better)
Translates to: GYARPVSLGQRGSALLRPVSFWF*KAPRPP
Trigger: GGGTGGACGCGGCGCTTTGCAAAACCAAAAAGACAC...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp CGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGCGGGGGAGGGGCAGAGGAGGATGGCGTTGGGCTTGTaGGTGACAGAAGTGGCGTTG +
Preference number: 4 (lower is better)
Translates to: RGPGRCPVRLSAGEGQRRMALGL*VTEVAL
Trigger: CAACGCCACTTCTGTCACCCACAAGCCCAACGCCAT...CCTCCTCTGCCCCTCCCCCGCAGACAGACGCACGGGACAGCGGCCTGGCCCACG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCCTGGTGGGAGTAGGGTaGTACGGTGCGAAGGAAGCT +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPLVGVG*YGAKEA
Trigger: AGCTTCCTTCGCACCGTACCACCCTACTCCCACCAG...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCACAGCGTCACTGATGTaGGCCGACTCGTTCTTGCCG +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPTASLM*ADSFLP
Trigger: CGGCAAGAACGAGTCGGCCCACATCAGTGACGCTGT...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCACGCAACCCCGCGGTaGATCAGTGATGTTCTCCTT +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCAHATPR*ISDVLL
Trigger: AAGGAGAACATCACTGATCCACCGCGGGGTTGCGTG...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCTGTCTTCCAGATGTTaGTGTTGCCCACGCAACCCC +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCALSSRC*CCPRNP
Trigger: GGGGTTGCGTGGGCAACACCAACATCTGGAAGACAG...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CTTGGCCGGGCTAACTGGGCAGGTGGGCGCCTCCGGGGGCCTCACACCACGGTGGGAAGGCTGCCAGGTTaGCAGTGTAGGAAGCCACGA +
Preference number: 4 (lower is better)
Translates to: LGRANWAGGRLRGPHTTVGRLPG*QCRKPR
Trigger: TCGTGGCTTCCTACACTGCCAACCTGGCAGCCTTCC...CACCGTGGTGTGAGGCCCCCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp AGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGGAACACAGCTGCAGCTaGCCCTCCTCCCTCTCAATA +
Preference number: 4 (lower is better)
Translates to: RQGGPLAPTSGARAGPGQEHSCS*PSSLSI
Trigger: TATTGAGAGGGAGGAGGGCCAGCTGCAGCTGTGTTC...CTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCTTGTCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp GTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGGAACACAGCTGCAGCTaGCCCTCCTCCCTCTCAATA +
Preference number: 4 (lower is better)
Translates to: VLQGLPARQQSRRTGGPGEHSCS*PSSLSI
Trigger: TATTGAGAGGGAGGAGGGCCAGCTGCAGCTGTGTTC...CCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR CAA 72 bp TCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTaGGCCGGGCTAACTGGGCAGGTGGGCGCCTCCGGG +
Preference number: 4 (lower is better)
Translates to: SGLPEQQDSSVS*AGLTGQVGASG
Trigger: CCCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGCACCGCGCCGATGTTaGCAATCTTGGGGTCGCAGG +
Preference number: 4 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRAPRRC*QSWGRR
Trigger: CCTGCGACCCCAAGATTGTCAACATCGGCGCGGTGC...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCGCACCGCGCCGATGTTaGCAATCTTGGGGTCGCAGG +
Preference number: 4 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSAPRRC*QSWGRR
Trigger: CCTGCGACCCCAAGATTGTCAACATCGGCGCGGTGC...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGCGGGGGAGGGGCAGAGGAGGGCTCCTCCTGGCCAGATaGTCTTCCTGTCATTTGGGA +
Preference number: 4 (lower is better)
Translates to: VGQAAVPCVCLRGRGRGGLLLAR*SSCHLG
Trigger: TCCCAAATGACAGGAAGATCATCTGGCCAGGAGGAG...CCCTCCTCTGCCCCTCCCCCGCAGACAGACGCACGGGACAGCGGCCTGGCCCAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp AGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGTCAGGCCCTGGTACTTaGAGGGCTTGGAGAACTCTA +
Preference number: 4 (lower is better)
Translates to: RQGGPLAPTSGARAGPGQSGPGT*RAWRTL
Trigger: TAGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGA...CTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCTTGTCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp CGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGCGGGGGAGGGGCAGAGGAGGTCAGGCCCTGGTACTTaGAGGGCTTGGAGAACTCTA +
Preference number: 4 (lower is better)
Translates to: RGPGRCPVRLSAGEGQRRSGPGT*RAWRTL
Trigger: TAGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGA...CCTCCTCTGCCCCTCCCCCGCAGACAGACGCACGGGACAGCGGCCTGGCCCACG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp GTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTCAGGCCCTGGTACTTaGAGGGCTTGGAGAACTCTA +
Preference number: 4 (lower is better)
Translates to: VLQGLPARQQSRRTGGPGSGPGT*RAWRTL
Trigger: TAGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGA...CCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAAAGGGCTGCATGAATaGGTCCAGTGTGCTCCGAGG +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPKGLHE*VQCAPR
Trigger: CCTCGGAGCACACTGGACTCATTCATGCAGCCCTTT...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGCGGGGGAGGGGCAGAGGAGGAAACTCCAGCACAGCTaGGTCCCAGATGAAGGCATG +
Preference number: 4 (lower is better)
Translates to: RGPGRCPVRLSAGEGQRRKLQHS*VPDEGM
Trigger: CATGCCTTCATCTGGGACTCAGCTGTGCTGGAGTTT...CCTCCTCTGCCCCTCCCCCGCAGACAGACGCACGGGACAGCGGCCTGGCCCACG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCAGATCGCACTTCTGTaGAGCCTCAAACTCCAGCAC +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCAQIALL*SLKLQH
Trigger: GTGCTGGAGTTTGAGGCTTCACAGAAGTGCGATCTG...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGAGGACCTACGTCTCTTaGAGCTGGAGGCCAGGGTGG +
Preference number: 4 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQRTYVS*SWRPGW
Trigger: CCACCCTGGCCTCCAGCTTCAAGAGACGTAGGTCCT...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCACATCTGCTCGTGCTTaGGCGTGCTCAGCACCGCGC +
Preference number: 4 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGTSARA*ACSAPR
Trigger: GCGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGT...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGCGGGGGAGGGGCAGAGGAGGATTGGCCTGGTTTACTaGCTCGCGGAACATCTGCTC +
Preference number: 4 (lower is better)
Translates to: RGPGRCPVRLSAGEGQRRIGLVY*LAEHLL
Trigger: GAGCAGATGTTCCGCGAGGCAGTAAACCAGGCCAAT...CCTCCTCTGCCCCTCCCCCGCAGACAGACGCACGGGACAGCGGCCTGGCCCACG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGTAGGGTGGTACGGTaGGAAGGAAGCTCAGGTGGA +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPSRVVR*EGSSGG
Trigger: TCCACCTGAGCTTCCTTCGCACCGTACCACCCTACT...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGCAGGCGCTTCTGCGCTaGCCGGCCCTCGTGGTCATC +
Preference number: 4 (lower is better)
Translates to: LALGKVGASPVNGVGRVVQALLR*PALVVI
Trigger: GATGACCACGAGGGCCGGGCAGCGCAGAAGCGCCTG...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGGTCTCCAGGCGCTTCTaGGCTGCCCGGCCCTCGTGG +
Preference number: 4 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWVSRRF*AARPSW
Trigger: CCACGAGGGCCGGGCAGCGCAGAAGCGCCTGGAGAC...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCAGTCTCCAGGCGCTTCTaGGCTGCCCGGCCCTCGTGG +
Preference number: 4 (lower is better)
Translates to: RPSRAAGLISVLGRANWAVSRRF*AARPSW
Trigger: CCACGAGGGCCGGGCAGCGCAGAAGCGCCTGGAGAC...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGTTCAGCATCGCGGCTaGGCGGTATACGGTGGCAGC +
Preference number: 4 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRVQHRG*AVYGGS
Trigger: GCTGCCACCGTATACCGCGCAGCCGCGATGCTGAAC...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGTTCAGCATCGCGGCTaGGCGGTATACGGTGGCAGC +
Preference number: 4 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPVQHRG*AVYGGS
Trigger: GCTGCCACCGTATACCGCGCAGCCGCGATGCTGAAC...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGGGTGGGCCAGTCACTCCATCTaGATACTTGGAAGACATCAG +
Preference number: 4 (lower is better)
Translates to: RRPVSSDVGGTRGAGTGWASHSI*ILGRHQ
Trigger: CTGATGTCTTCCAAGTATGCAGATGGAGTGACTGGC...CCACCCTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp GTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGGGGTACCATTGTAGATaGCCACTTGCACCAGCTTGC +
Preference number: 4 (lower is better)
Translates to: VLQGLPARQQSRRTGGPGGYHCR*PLAPAC
Trigger: GCAAGCTGGTGCAAGTGGGCATCTACAATGGTACCC...CCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGAC
67% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCTGTGTGCCAAACTTaGCATCTGCCACAAGGTGCA +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCAPVCQT*HLPQGA
Trigger: TGCACCTTGTGGCAGATGGCAAGTTTGGCACACAGG...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCGACAGGGACACATTTTaGTTCCAGGGGCTGTCCTTG +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCADRDTF*FQGLSL
Trigger: CAAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTC...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCCCACACGTTCACGGCTaGAAAAGCCAGCTGCATCTG +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPPHVHG*KSQLHL
Trigger: CAGATGCAGCTGGCTTTTGCAGCCGTGAACGTGTGG...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGCGGGGGAGGGGCAGAGGAGGGTGTCTTTTTGGTTTTaGAAAGCGCCGCGTCCACCC +
Preference number: 4 (lower is better)
Translates to: RGPGRCPVRLSAGEGQRRVSFWF*KAPRPP
Trigger: GGGTGGACGCGGCGCTTTGCAAAACCAAAAAGACAC...CCTCCTCTGCCCCTCCCCCGCAGACAGACGCACGGGACAGCGGCCTGGCCCACG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCTCTCAAACCAGACGCTaGACTGGTGGGAGTAGGGTG +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPSQTRR*TGGSRV
Trigger: CACCCTACTCCCACCAGTCCAGCGTCTGGTTTGAGA...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTGCTGCCCGGCCCTCGTaGTCATCGCTGACCAGCAGG +
Preference number: 4 (lower is better)
Translates to: APLGSAATRAVKASPGKGAARPS*SSLTSR
Trigger: CCTGCTGGTCAGCGATGACCACGAGGGCCGGGCAGC...ACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGCTGCCCGGCCCTCGTaGTCATCGCTGACCAGCAGG +
Preference number: 4 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRAARPS*SSLTSR
Trigger: CCTGCTGGTCAGCGATGACCACGAGGGCCGGGCAGC...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGCTGCGCGGTATACGGTaGCAGCGTCGTCCTCGCTTG +
Preference number: 4 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRLRGIR*QRRPRL
Trigger: CAAGCGAGGACGACGCTGCCACCGTATACCGCGCAG...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTCTGTCTTCCAGATGTTaGTGTTGCCCACGCAACCCC +
Preference number: 4 (lower is better)
Translates to: SCRGCPPGSRAGGREAQGLSSRC*CCPRNP
Trigger: GGGGTTGCGTGGGCAACACCAACATCTGGAAGACAG...ACCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGCGGGGGAGGGGCAGAGGAGGAGAATGGTCAGGCCCTaGTACTTGAAGGGCTTGGAG +
Preference number: 4 (lower is better)
Translates to: RGPGRCPVRLSAGEGQRRRMVRP*YLKGLE
Trigger: CTCCAAGCCCTTCAAGTACCAGGGCCTGACCATTCT...CCTCCTCTGCCCCTCCCCCGCAGACAGACGCACGGGACAGCGGCCTGGCCCACG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCCCCAGGAAAACCACATaGCAGAGGACAGGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPPRKTT*QRTGSV
Trigger: CACTGACCCTGTCCTCTGCCATGTGGTTTTCCTGGG...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
67% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCGGTCCCCATCCTCATTaGATTCCACACGGCCAGTCA +
Preference number: 4 (lower is better)
Translates to: RCCAPVARGRHALGHWESGPHPH*IPHGQS
Trigger: TGACTGGCCGTGTGGAATTCAATGAGGATGGGGACC...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGCTCCTCCTGGCCAGATaGTCTTCCTGTCATTTGGGA +
Preference number: 4 (lower is better)
Translates to: RRAPGLCVGQAAVPCVCLLLLAR*SSCHLG
Trigger: TCCCAAATGACAGGAAGATCATCTGGCCAGGAGGAG...CAGACAGACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp TCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTCTCCTCCTGGCCAGATaGTCTTCCTGTCATTTGGGA +
Preference number: 4 (lower is better)
Translates to: SCRGCPPGSRAGGREAQGLLLAR*SSCHLG
Trigger: TCCCAAATGACAGGAAGATCATCTGGCCAGGAGGAG...ACCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CGACCCCGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCCACTCATTGTGGGCTTaGCATACACGAAGGGTTCTT +
Preference number: 4 (lower is better)
Translates to: RPRRAPGLCVGQAAVPCVHSLWA*HTRRVL
Trigger: AAGAACCCTTCGTGTATGTCAAGCCCACAATGAGTG...GACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACGGGGTCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp TCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTTCAGGCCCTGGTACTTaGAGGGCTTGGAGAACTCTA +
Preference number: 4 (lower is better)
Translates to: SCRGCPPGSRAGGREAQGSGPGT*RAWRTL
Trigger: TAGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGA...ACCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGATCACGGCCACCACATaGACTGACAGCCCCACCAGC +
Preference number: 4 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQITATT*TDSPTS
Trigger: GCTGGTGGGGCTGTCAGTTCATGTGGTGGCCGTGAT...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCCAGCTGAGTCCCAGATaGAGGCATGGAGCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPQLSPR*RHGACC
Trigger: ACAACAAGCTCCATGCCTTCATCTGGGACTCAGCTG...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CGACCCCGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCCATTCTCATGGGACTTaGGTATGGACAGGGACACAT +
Preference number: 4 (lower is better)
Translates to: RPRRAPGLCVGQAAVPCVHSHGT*VWTGTH
Trigger: ATGTGTCCCTGTCCATACTCAAGTCCCATGAGAATG...GACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACGGGGTCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCAGGACCTACGTCTCTTaGAGCTGGAGGCCAGGGTGG +
Preference number: 4 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGRTYVS*SWRPGW
Trigger: CCACCCTGGCCTCCAGCTTCAAGAGACGTAGGTCCT...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGGCTCGTGCTTGCGCGTaGTCAGCACCGCGCCGATGT +
Preference number: 4 (lower is better)
Translates to: LALGKVGASPVNGVGRVVARACA*SAPRRC
Trigger: ACATCGGCGCGGTGCTGAGCACGCGCAAGCACGAGC...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGCTCGTGCTTGCGCGTaGTCAGCACCGCGCCGATGT +
Preference number: 4 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLAARACA*SAPRRC
Trigger: ACATCGGCGCGGTGCTGAGCACGCGCAAGCACGAGC...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATACATCTGCTCGTGCTTaGGCGTGCTCAGCACCGCGC +
Preference number: 4 (lower is better)
Translates to: APQWLGEGTRLDTGRASHTSARA*ACSAPR
Trigger: GCGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGT...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGCGGAACATCTGCTCGTaGTTGCGCGTGCTCAGCACC +
Preference number: 4 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRRNICS*LRVLST
Trigger: GGTGCTGAGCACGCGCAAGCACGAGCAGATGTTCCG...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCAGTAGGGTGGTACGGTaGGAAGGAAGCTCAGGTGGA +
Preference number: 4 (lower is better)
Translates to: RCCAPVARGRHALGHWESSRVVR*EGSSGG
Trigger: TCCACCTGAGCTTCCTTCGCACCGTACCACCCTACT...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCTCGTGGACTGCCTGTaGCACCACGCCCACAGCGTC +
Preference number: 4 (lower is better)
Translates to: APLGSAATRAVKASPGKGLVDCL*HHAHSV
Trigger: GACGCTGTGGGCGTGGTGGCACAGGCAGTCCACGAG...ACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCTCGTGGACTGCCTGTaGCACCACGCCCACAGCGTC +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGLVDCL*HHAHSV
Trigger: GACGCTGTGGGCGTGGTGGCACAGGCAGTCCACGAG...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCCTCGTGGACTGCCTGTaGCACCACGCCCACAGCGTC +
Preference number: 4 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLALVDCL*HHAHSV
Trigger: GACGCTGTGGGCGTGGTGGCACAGGCAGTCCACGAG...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGCTCGTGGACTGCCTGTaGCACCACGCCCACAGCGTC +
Preference number: 4 (lower is better)
Translates to: LALGKVGASPVNGVGRVVLVDCL*HHAHSV
Trigger: GACGCTGTGGGCGTGGTGGCACAGGCAGTCCACGAG...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCATCCAGATGTTGGTGTTaGCCACGCAACCCCGCGGTG +
Preference number: 4 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPSRCWC*PRNPAV
Trigger: CACCGCGGGGTTGCGTGGGCAACACCAACATCTGGA...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCTCCAGATGTTGGTGTTaGCCACGCAACCCCGCGGTG +
Preference number: 4 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGSRCWC*PRNPAV
Trigger: CACCGCGGGGTTGCGTGGGCAACACCAACATCTGGA...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCGCCAGTCACTCCATCTaGATACTTGGAAGACATCAG +
Preference number: 4 (lower is better)
Translates to: GYARPVSLGQRGSALLRPASHSI*ILGRHQ
Trigger: CTGATGTCTTCCAAGTATGCAGATGGAGTGACTGGC...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTTGGCCGGGCTAACTGGGCAGGTGGGCGCCTCCGGGGGCCTCACACCACGGTGGGGTACCATTGTAGATaGCCACTTGCACCAGCTTGC +
Preference number: 4 (lower is better)
Translates to: LGRANWAGGRLRGPHTTVGYHCR*PLAPAC
Trigger: GCAAGCTGGTGCAAGTGGGCATCTACAATGGTACCC...CACCGTGGTGTGAGGCCCCCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp CGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGCCTGTGTGCCAAACTTaGCATCTGCCACAAGGTGCA +
Preference number: 4 (lower is better)
Translates to: RRAPGLCVGQAAVPCVCLPVCQT*HLPQGA
Trigger: TGCACCTTGTGGCAGATGGCAAGTTTGGCACACAGG...CAGACAGACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCTTACCCGCTCCTGTGTaGCAAACTTGCCATCTGCCA +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPLPAPV*QTCHLP
Trigger: TGGCAGATGGCAAGTTTGGCACACAGGAGCGGGTAA...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTAGCCACGATCATGTCTaGTTGACCACTGAGCAGCTC +
Preference number: 4 (lower is better)
Translates to: SCRGCPPGSRAGGREAQGSHDHV*LTTEQL
Trigger: GAGCTGCTCAGTGGTCAAGCAGACATGATCGTGGCT...ACCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGAGAGGACAGGGTCAGTaGATCCTCCTCCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQRGQGQ*ILLLLL
Trigger: GAGGAGGAGGAGGAGGATGCACTGACCCTGTCCTCT...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCACCTTGCGCATGCCGATaGCAAAGCCGGAGCGGAAGA +
Preference number: 4 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPPCACR*QSRSGR
Trigger: TCTTCCGCTCCGGCTTTGGCATCGGCATGCGCAAGG...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGCCTTGCGCATGCCGATaGCAAAGCCGGAGCGGAAGA +
Preference number: 4 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQPCACR*QSRSGR
Trigger: TCTTCCGCTCCGGCTTTGGCATCGGCATGCGCAAGG...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCGACAGGGACACATTTTaGTTCCAGGGGCTGTCCTTG +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPDRDTF*FQGLSL
Trigger: CAAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTC...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCACTCTTTCTATCCTaGAGGTTCTTCCTCCACACG +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCAPLFLS*RFFLHT
Trigger: CGTGTGGAGGAAGAACCTGCAGGATAGAAAGAGTGG...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCCACATTCTTGGTTCCTaGGTCAAACTGCAGCACCTT +
Preference number: 4 (lower is better)
Translates to: GYARPVSLGQRGSALLRPHILGS*VKLQHL
Trigger: AAGGTGCTGCAGTTTGACCCAGGAACCAAGAATGTG...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGCTGCGCGGTATACGGTaGCAGCGTCGTCCTCGCTTG +
Preference number: 4 (lower is better)
Translates to: QRAPLGSAATRAVKASPGLRGIR*QRRPRL
Trigger: CAAGCGAGGACGACGCTGCCACCGTATACCGCGCAG...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATCTGCGCGGTATACGGTaGCAGCGTCGTCCTCGCTTG +
Preference number: 4 (lower is better)
Translates to: APQWLGEGTRLDTGRASHLRGIR*QRRPRL
Trigger: CAAGCGAGGACGACGCTGCCACCGTATACCGCGCAG...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGACAGCGTCACTGATGTaGGCCGACTCGTTCTTGCCG +
Preference number: 4 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQTASLM*ADSFLP
Trigger: CGGCAAGAACGAGTCGGCCCACATCAGTGACGCTGT...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCCTCCATCTGCATACTTaGAAGACATCAGCACCCTCT +
Preference number: 4 (lower is better)
Translates to: GYARPVSLGQRGSALLRPLHLHT*KTSAPS
Trigger: AGAGGGTGCTGATGTCTTCCAAGTATGCAGATGGAG...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTTCCCAGATGAAGGCATaGAGCTTGTTGTCCCGCACA +
Preference number: 4 (lower is better)
Translates to: SCRGCPPGSRAGGREAQGSQMKA*SLLSRT
Trigger: TGTGCGGGACAACAAGCTCCATGCCTTCATCTGGGA...ACCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CGACCCCGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCAGCACTGTGTCTTTTTaGTTTTGCAAAGCGCCGCGT +
Preference number: 4 (lower is better)
Translates to: RPRRAPGLCVGQAAVPCVSTVSF*FCKAPR
Trigger: ACGCGGCGCTTTGCAAAACCAAAAAGACACAGTGCT...GACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACGGGGTCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCGCACCTTCTCTGCCTTaGGTCCGCGCTTGTTGTCAT +
Preference number: 4 (lower is better)
Translates to: RCCAPVARGRHALGHWESAPSLP*VRACCH
Trigger: ATGACAACAAGCGCGGACCCAAGGCAGAGAAGGTGC...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGCACCGCGCCGATGTTaGCAATCTTGGGGTCGCAGG +
Preference number: 4 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLAAPRRC*QSWGRR
Trigger: CCTGCGACCCCAAGATTGTCAACATCGGCGCGGTGC...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGGGTGGGGTTCTGCAGGTTCATaGTACTATAGTTGGCAAACT +
Preference number: 4 (lower is better)
Translates to: RRPVSSDVGGTRGAGTGWGSAGS*YYSWQT
Trigger: AGTTTGCCAACTATAGTATCATGAACCTGCAGAACC...CCACCCTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCCTCCTCCTGGCCAGATaGTCTTCCTGTCATTTGGGA +
Preference number: 4 (lower is better)
Translates to: RCCAPVARGRHALGHWESLLLAR*SSCHLG
Trigger: TCCCAAATGACAGGAAGATCATCTGGCCAGGAGGAG...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTCACTGGGGCACTGTGTaGCGTGGGCTTCCTGGGGAT +
Preference number: 4 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRHWGTV*RGLPGD
Trigger: ATCCCCAGGAAGCCCACGTCACACAGTGCCCCAGTG...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGCACTGGGGCACTGTGTaGCGTGGGCTTCCTGGGGAT +
Preference number: 4 (lower is better)
Translates to: LALGKVGASPVNGVGRVVHWGTV*RGLPGD
Trigger: ATCCCCAGGAAGCCCACGTCACACAGTGCCCCAGTG...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGATCACGGCCACCACATaGACTGACAGCCCCACCAGC +
Preference number: 4 (lower is better)
Translates to: QRAPLGSAATRAVKASPGITATT*TDSPTS
Trigger: GCTGGTGGGGCTGTCAGTTCATGTGGTGGCCGTGAT...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp TCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTATAGATGAACTTGTCTaGGGGGTTTCTGAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: SCRGCPPGSRAGGREAQGIDELV*GVSEPG
Trigger: CCCAGGCTCAGAAACCCCTCAGACAAGTTCATCTAT...ACCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCCAGCTGAGTCCCAGATaGAGGCATGGAGCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: RCCAPVARGRHALGHWESQLSPR*RHGACC
Trigger: ACAACAAGCTCCATGCCTTCATCTGGGACTCAGCTG...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGCATTCTCATGGGACTTaGGTATGGACAGGGACACAT +
Preference number: 4 (lower is better)
Translates to: RQGGPLAPTSGARAGPGQHSHGT*VWTGTH
Trigger: ATGTGTCCCTGTCCATACTCAAGTCCCATGAGAATG...CTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCTTGTCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCATTCTCATGGGACTTaGGTATGGACAGGGACACAT +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCAHSHGT*VWTGTH
Trigger: ATGTGTCCCTGTCCATACTCAAGTCCCATGAGAATG...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGCTGACCGAGGGATCTaGGAGGTTGAGCGGGCCCGT +
Preference number: 4 (lower is better)
Translates to: VKASPGKGRSQPSEWGGKADRGI*EVERAR
Trigger: ACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAGC...CTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCAGCTCGTGCTTGCGCGTaGTCAGCACCGCGCCGATGT +
Preference number: 4 (lower is better)
Translates to: RPSRAAGLISVLGRANWAARACA*SAPRRC
Trigger: ACATCGGCGCGGTGCTGAGCACGCGCAAGCACGAGC...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGAGCGTCGTCCTCGCTTaGAGAAAGGATGATGACCCG +
Preference number: 4 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQSVVLA*RKDDDP
Trigger: CGGGTCATCATCCTTTCTGCAAGCGAGGACGACGCT...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTGTTCAGCATCGCGGCTaGGCGGTATACGGTGGCAGC +
Preference number: 4 (lower is better)
Translates to: ASLRPSRAAGLISVLGRAVQHRG*AVYGGS
Trigger: GCTGCCACCGTATACCGCGCAGCCGCGATGCTGAAC...AGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCGTTCAGCATCGCGGCTaGGCGGTATACGGTGGCAGC +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGVQHRG*AVYGGS
Trigger: GCTGCCACCGTATACCGCGCAGCCGCGATGCTGAAC...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGCTCGTGGACTGCCTGTaGCACCACGCCCACAGCGTC +
Preference number: 4 (lower is better)
Translates to: VKASPGKGRSQPSEWGGKLVDCL*HHAHSV
Trigger: GACGCTGTGGGCGTGGTGGCACAGGCAGTCCACGAG...CTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCACTCGTGGACTGCCTGTaGCACCACGCCCACAGCGTC +
Preference number: 4 (lower is better)
Translates to: RPSRAAGLISVLGRANWALVDCL*HHAHSV
Trigger: GACGCTGTGGGCGTGGTGGCACAGGCAGTCCACGAG...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCTCGTGGACTGCCTGTaGCACCACGCCCACAGCGTC +
Preference number: 4 (lower is better)
Translates to: SGLPEQQDSSVSLAGLTGLVDCL*HHAHSV
Trigger: GACGCTGTGGGCGTGGTGGCACAGGCAGTCCACGAG...CCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCGCCAGTCACTCCATCTaGATACTTGGAAGACATCAG +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCAASHSI*ILGRHQ
Trigger: CTGATGTCTTCCAAGTATGCAGATGGAGTGACTGGC...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGAAAATTCATGGTCCGTaGCAGCTTGATGAGCAGGTC +
Preference number: 4 (lower is better)
Translates to: VLQGLPARQQSRRTGGPGKIHGP*QLDEQV
Trigger: GACCTGCTCATCAAGCTGGCACGGACCATGAATTTT...CCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCCCTGTGTGCCAAACTTaGCATCTGCCACAAGGTGCA +
Preference number: 4 (lower is better)
Translates to: RCCAPVARGRHALGHWESPVCQT*HLPQGA
Trigger: TGCACCTTGTGGCAGATGGCAAGTTTGGCACACAGG...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CGACCCCGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCTCCACTCCTTTTTGTTaGTGTTGTTTACCCGCTCCT +
Preference number: 4 (lower is better)
Translates to: RPRRAPGLCVGQAAVPCVSTPFC*CCLPAP
Trigger: AGGAGCGGGTAAACAACAGCAACAAAAAGGAGTGGA...GACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACGGGGTCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCAGAGGACAGGGTCAGTaGATCCTCCTCCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGRGQGQ*ILLLLL
Trigger: GAGGAGGAGGAGGAGGATGCACTGACCCTGTCCTCT...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGTGTGCCGGTACATGGTaGTCAACTCCACCTGCCTCC +
Preference number: 4 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRCAGTW*STPPAS
Trigger: GGAGGCAGGTGGAGTTGAGCACCATGTACCGGCACA...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGCCTTGCGCATGCCGATaGCAAAGCCGGAGCGGAAGA +
Preference number: 4 (lower is better)
Translates to: QRAPLGSAATRAVKASPGPCACR*QSRSGR
Trigger: TCTTCCGCTCCGGCTTTGGCATCGGCATGCGCAAGG...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATCCTTGCGCATGCCGATaGCAAAGCCGGAGCGGAAGA +
Preference number: 4 (lower is better)
Translates to: APQWLGEGTRLDTGRASHPCACR*QSRSGR
Trigger: TCTTCCGCTCCGGCTTTGGCATCGGCATGCGCAAGG...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCGACAGGGACACATTTTaGTTCCAGGGGCTGTCCTTG +
Preference number: 4 (lower is better)
Translates to: RCCAPVARGRHALGHWESDRDTF*FQGLSL
Trigger: CAAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTC...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCCTGGTGGGAGTAGGGTaGTACGGTGCGAAGGAAGCT +
Preference number: 4 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGLVGVG*YGAKEA
Trigger: AGCTTCCTTCGCACCGTACCACCCTACTCCCACCAG...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCTGGTGGGAGTAGGGTaGTACGGTGCGAAGGAAGCT +
Preference number: 4 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSLVGVG*YGAKEA
Trigger: AGCTTCCTTCGCACCGTACCACCCTACTCCCACCAG...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGCTGGTGGGAGTAGGGTaGTACGGTGCGAAGGAAGCT +
Preference number: 4 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQLVGVG*YGAKEA
Trigger: AGCTTCCTTCGCACCGTACCACCCTACTCCCACCAG...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCGCACCTTCTCTGCCTTaGACTCACGCTCCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPAPSLP*THAPPA
Trigger: TGCTGGAGGAGCGTGAGTCCAAGGCAGAGAAGGTGC...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114312.2
ENSMUST00000114314.10
CDS-3UTR CCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGCACCTTCTCTGCCTTaGACTCACGCTCCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQAPSLP*THAPPA
Trigger: TGCTGGAGGAGCGTGAGTCCAAGGCAGAGAAGGTGC...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114312.2
ENSMUST00000114314.10
CDS-3UTR CCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCTGCGCGGTATACGGTaGCAGCGTCGTCCTCGCTTG +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGLRGIR*QRRPRL
Trigger: CAAGCGAGGACGACGCTGCCACCGTATACCGCGCAG...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCACAGCGTCACTGATGTaGGCCGACTCGTTCTTGCCG +
Preference number: 4 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGTASLM*ADSFLP
Trigger: CGGCAAGAACGAGTCGGCCCACATCAGTGACGCTGT...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGACAGCGTCACTGATGTaGGCCGACTCGTTCTTGCCG +
Preference number: 4 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRTASLM*ADSFLP
Trigger: CGGCAAGAACGAGTCGGCCCACATCAGTGACGCTGT...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGTCTGGTGGACATCTaGTATCCTCGAGGCTTCTCT +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPSLVDI*YPRGFS
Trigger: AGAGAAGCCTCGAGGATACCAGATGTCCACCAGACT...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CGACCCCGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCCTATCTTTAGTCTGGTaGACATCTGGTATCCTCGAG +
Preference number: 4 (lower is better)
Translates to: RPRRAPGLCVGQAAVPCVLSLVW*TSGILE
Trigger: CTCGAGGATACCAGATGTCCACCAGACTAAAGATAG...GACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACGGGGTCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCAGAATGGTCAGGCCCTaGTACTTGAAGGGCTTGGAG +
Preference number: 4 (lower is better)
Translates to: RCCAPVARGRHALGHWESRMVRP*YLKGLE
Trigger: CTCCAAGCCCTTCAAGTACCAGGGCCTGACCATTCT...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGGAAGGCTGCCAGGTTaGCAGTGTAGGAAGCCACGA +
Preference number: 4 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPGRLPG*QCRKPR
Trigger: TCGTGGCTTCCTACACTGCCAACCTGGCAGCCTTCC...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGCCATGTGCCGGTACATaGTGCTCAACTCCACCTGCC +
Preference number: 4 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRPCAGT*CSTPPA
Trigger: GGCAGGTGGAGTTGAGCACCATGTACCGGCACATGG...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATCCCGCACAGCCTGGATaGCCTCAGCTGCACTCTCAT +
Preference number: 4 (lower is better)
Translates to: APQWLGEGTRLDTGRASHPAQPG*PQLHSH
Trigger: ATGAGAGTGCAGCTGAGGCCATCCAGGCTGTGCGGG...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGCCCGCACAGCCTGGATaGCCTCAGCTGCACTCTCAT +
Preference number: 4 (lower is better)
Translates to: QRAPLGSAATRAVKASPGPAQPG*PQLHSH
Trigger: ATGAGAGTGCAGCTGAGGCCATCCAGGCTGTGCGGG...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGAGCACTGTGTCTTTTTaGTTTTGCAAAGCGCCGCGT +
Preference number: 4 (lower is better)
Translates to: VLQGLPARQQSRRTGGPGSTVSF*FCKAPR
Trigger: ACGCGGCGCTTTGCAAAACCAAAAAGACACAGTGCT...CCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
3UTR CAA 72 bp GCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTaGGACACTGGGAGAGCTAGTCATGTACAAGGTTGG +
Preference number: 4 (lower is better)
Translates to: AAAPQWLGEGTR*DTGRASHVQGW
Trigger: CCAACCTTGTACATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCGGTCCCCATCCTCATTaGATTCCACACGGCCAGTCA +
Preference number: 4 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGGPHPH*IPHGQS
Trigger: TGACTGGCCGTGTGGAATTCAATGAGGATGGGGACC...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGGAAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTACACTGGGGCACTGTGTaGCGTGGGCTTCCTGGGGAT +
Preference number: 4 (lower is better)
Translates to: RKDGAAISAPGSSDRGHLHWGTV*RGLPGD
Trigger: ATCCCCAGGAAGCCCACGTCACACAGTGCCCCAGTG...TAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTTCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCAAAGGGCTGCATGAATaGGTCCAGTGTGCTCCGAGG +
Preference number: 4 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGKGLHE*VQCAPR
Trigger: CCTCGGAGCACACTGGACTCATTCATGCAGCCCTTT...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCAAAGGGCTGCATGAATaGGTCCAGTGTGCTCCGAGG +
Preference number: 4 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSKGLHE*VQCAPR
Trigger: CCTCGGAGCACACTGGACTCATTCATGCAGCCCTTT...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTATCACGGCCACCACATaGACTGACAGCCCCACCAGC +
Preference number: 4 (lower is better)
Translates to: ASLRPSRAAGLISVLGRAITATT*TDSPTS
Trigger: GCTGGTGGGGCTGTCAGTTCATGTGGTGGCCGTGAT...AGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCCAATGCCAGAGTTaGGCAGGACGCCCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGPQCQS*AGRPRK
Trigger: TTTCCTGGGGCGTCCTGCTCAACTCTGGCATTGGGG...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGCTCGTGCTTGCGCGTaGTCAGCACCGCGCCGATGT +
Preference number: 4 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWARACA*SAPRRC
Trigger: ACATCGGCGCGGTGCTGAGCACGCGCAAGCACGAGC...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAACATCTGCTCGTGCTTaGGCGTGCTCAGCACCGCGC +
Preference number: 4 (lower is better)
Translates to: RAPLGSAATRAVKASPGKTSARA*ACSAPR
Trigger: GCGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGT...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCAACATCTGCTCGTGCTTaGGCGTGCTCAGCACCGCGC +
Preference number: 4 (lower is better)
Translates to: RPSRAAGLISVLGRANWATSARA*ACSAPR
Trigger: GCGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGT...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGGAAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAACATCTGCTCGTGCTTaGGCGTGCTCAGCACCGCGC +
Preference number: 4 (lower is better)
Translates to: RKDGAAISAPGSSDRGHLTSARA*ACSAPR
Trigger: GCGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGT...TAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTTCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGACATCTGCTCGTGCTTaGGCGTGCTCAGCACCGCGC +
Preference number: 4 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWTSARA*ACSAPR
Trigger: GCGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGT...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCGGAACATCTGCTCGTaGTTGCGCGTGCTCAGCACC +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGRNICS*LRVLST
Trigger: GGTGCTGAGCACGCGCAAGCACGAGCAGATGTTCCG...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCCGGAACATCTGCTCGTaGTTGCGCGTGCTCAGCACC +
Preference number: 4 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLARNICS*LRVLST
Trigger: GGTGCTGAGCACGCGCAAGCACGAGCAGATGTTCCG...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGCCTCGCGGAACATCTaGTCGTGCTTGCGCGTGCTC +
Preference number: 4 (lower is better)
Translates to: RAPLGSAATRAVKASPGKASRNI*SCLRVL
Trigger: GAGCACGCGCAAGCACGAGCAGATGTTCCGCGAGGC...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCCAGGCGCTTCTGCGCTaGCCGGCCCTCGTGGTCATC +
Preference number: 4 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGAQALLR*PALVVI
Trigger: GATGACCACGAGGGCCGGGCAGCGCAGAAGCGCCTG...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGGTTCAGCATCGCGGCTaGGCGGTATACGGTGGCAGC +
Preference number: 4 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWVQHRG*AVYGGS
Trigger: GCTGCCACCGTATACCGCGCAGCCGCGATGCTGAAC...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTTGGCCGGGCTAACTGGGCAGGTGGGCGCCTCCGGGGGCCTCACACCACGGTGGCCAGTCACTCCATCTaGATACTTGGAAGACATCAG +
Preference number: 4 (lower is better)
Translates to: LGRANWAGGRLRGPHTTVASHSI*ILGRHQ
Trigger: CTGATGTCTTCCAAGTATGCAGATGGAGTGACTGGC...CACCGTGGTGTGAGGCCCCCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGGGGTACCATTGTAGATaGCCACTTGCACCAGCTTGC +
Preference number: 4 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQGYHCR*PLAPAC
Trigger: GCAAGCTGGTGCAAGTGGGCATCTACAATGGTACCC...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGGCCAAACTTGCCATCTaGCACAAGGTGCACCTCGTA +
Preference number: 4 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQAKLAI*HKVHLV
Trigger: TACGAGGTGCACCTTGTGGCAGATGGCAAGTTTGGC...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCTCCACTCCTTTTTGTTaGTGTTGTTTACCCGCTCCT +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCASTPFC*CCLPAP
Trigger: AGGAGCGGGTAAACAACAGCAACAAAAAGGAGTGGA...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATAGAGGACAGGGTCAGTaGATCCTCCTCCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: APQWLGEGTRLDTGRASHRGQGQ*ILLLLL
Trigger: GAGGAGGAGGAGGAGGATGCACTGACCCTGTCCTCT...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTTGGCCGGGCTAACTGGGCAGGTGGGCGCCTCCGGGGGCCTCACACCACGGTGCTGGATGGCCTCAGCTaGACTCTCATAATTGTGCTT +
Preference number: 4 (lower is better)
Translates to: LGRANWAGGRLRGPHTTVLDGLS*TLIIVL
Trigger: AAGCACAATTATGAGAGTGCAGCTGAGGCCATCCAG...CACCGTGGTGTGAGGCCCCCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp GCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCCTTGCGCATGCCGATaGCAAAGCCGGAGCGGAAGA +
Preference number: 4 (lower is better)
Translates to: APLGSAATRAVKASPGKGPCACR*QSRSGR
Trigger: TCTTCCGCTCCGGCTTTGGCATCGGCATGCGCAAGG...ACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCTCCAGGGGCTGTCCTTaGGCATGCCGATGCCAAAGC +
Preference number: 4 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLASRGCP*ACRCQS
Trigger: GCTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGA...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCTCCAGGGGCTGTCCTTaGGCATGCCGATGCCAAAGC +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGSRGCP*ACRCQS
Trigger: GCTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGA...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATGGGTGGCAGGGGCATTaGTGCGGGAGTCACATTCTT +
Preference number: 4 (lower is better)
Translates to: APQWLGEGTRLDTGRASHGWQGH*CGSHIL
Trigger: AAGAATGTGACTCCCGCAGCAATGCCCCTGCCACCC...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGAAAGCCAGCTGCATCTaGTTCCTACGGGCATCCTTG +
Preference number: 4 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQKASCI*FLRASL
Trigger: CAAGGATGCCCGTAGGAAGCAGATGCAGCTGGCTTT...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCCCACACGTTCACGGCTaGAAAAGCCAGCTGCATCTG +
Preference number: 4 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPPHVHG*KSQLHL
Trigger: CAGATGCAGCTGGCTTTTGCAGCCGTGAACGTGTGG...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
63% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTCAGTGGGATGGTACTaGGTGTCTTTGGAGGACCTA +
Preference number: 4 (lower is better)
Translates to: RCCAPVARGRHALGHWESSVGWY*VSLEDL
Trigger: TAGGTCCTCCAAAGACACGCAGTACCATCCCACTGA...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGGGGGTGGGAGTGAAGTaGTCGTTGGGAGTAGGCGGG +
Preference number: 4 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWGVGVK*SLGVGG
Trigger: CCCGCCTACTCCCAACGACCACTTCACTCCCACCCC...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCAGGGGTGGGAGTGAAGTaGTCGTTGGGAGTAGGCGGG +
Preference number: 4 (lower is better)
Translates to: RPSRAAGLISVLGRANWAGVGVK*SLGVGG
Trigger: CCCGCCTACTCCCAACGACCACTTCACTCCCACCCC...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATCTGGTGGGAGTAGGGTaGTACGGTGCGAAGGAAGCT +
Preference number: 4 (lower is better)
Translates to: APQWLGEGTRLDTGRASHLVGVG*YGAKEA
Trigger: AGCTTCCTTCGCACCGTACCACCCTACTCCCACCAG...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGTCTCAAACCAGACGCTaGACTGGTGGGAGTAGGGTG +
Preference number: 4 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQSQTRR*TGGSRV
Trigger: CACCCTACTCCCACCAGTCCAGCGTCTGGTTTGAGA...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCATCTCAAACCAGACGCTaGACTGGTGGGAGTAGGGTG +
Preference number: 4 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPSQTRR*TGGSRV
Trigger: CACCCTACTCCCACCAGTCCAGCGTCTGGTTTGAGA...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCTCTCAAACCAGACGCTaGACTGGTGGGAGTAGGGTG +
Preference number: 4 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSSQTRR*TGGSRV
Trigger: CACCCTACTCCCACCAGTCCAGCGTCTGGTTTGAGA...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCCACATTCTTGGTTCCTaGGTCAAACTGCAGCACCTT +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPHILGS*VKLQHL
Trigger: AAGGTGCTGCAGTTTGACCCAGGAACCAAGAATGTG...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGCACGCAACCCCGCGGTaGATCAGTGATGTTCTCCTT +
Preference number: 4 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQHATPR*ISDVLL
Trigger: AAGGAGAACATCACTGATCCACCGCGGGGTTGCGTG...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCCTCCATCTGCATACTTaGAAGACATCAGCACCCTCT +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPLHLHT*KTSAPS
Trigger: AGAGGGTGCTGATGTCTTCCAAGTATGCAGATGGAG...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGCTATCTTTAGTCTGGTaGACATCTGGTATCCTCGAG +
Preference number: 4 (lower is better)
Translates to: VLQGLPARQQSRRTGGPGLSLVW*TSGILE
Trigger: CTCGAGGATACCAGATGTCCACCAGACTAAAGATAG...CCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CGACCCCGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCTCACTATCTTTAGTCTaGTGGACATCTGGTATCCTC +
Preference number: 4 (lower is better)
Translates to: RPRRAPGLCVGQAAVPCVSLSLV*WTSGIL
Trigger: GAGGATACCAGATGTCCACCAGACTAAAGATAGTGA...GACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACGGGGTCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCCCAGGAAAACCACATaGCAGAGGACAGGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSPRKTT*QRTGSV
Trigger: CACTGACCCTGTCCTCTGCCATGTGGTTTTCCTGGG...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCCCCAGGAAAACCACATaGCAGAGGACAGGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPPRKTT*QRTGSV
Trigger: CACTGACCCTGTCCTCTGCCATGTGGTTTTCCTGGG...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
63% GC, longest homopolymer 7 nt, total homopolymer stretches 19 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGCCCAGGAAAACCACATaGCAGAGGACAGGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQPRKTT*QRTGSV
Trigger: CACTGACCCTGTCCTCTGCCATGTGGTTTTCCTGGG...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGCCCAGGAAAACCACATaGCAGAGGACAGGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRPRKTT*QRTGSV
Trigger: CACTGACCCTGTCCTCTGCCATGTGGTTTTCCTGGG...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATGGAAGGCTGCCAGGTTaGCAGTGTAGGAAGCCACGA +
Preference number: 4 (lower is better)
Translates to: APQWLGEGTRLDTGRASHGRLPG*QCRKPR
Trigger: TCGTGGCTTCCTACACTGCCAACCTGGCAGCCTTCC...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCGCACAGCCTGGATaGCCTCAGCTGCACTCTCAT +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGPAQPG*PQLHSH
Trigger: ATGAGAGTGCAGCTGAGGCCATCCAGGCTGTGCGGG...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGTCCCAGATGAAGGCATaGAGCTTGTTGTCCCGCACA +
Preference number: 4 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQSQMKA*SLLSRT
Trigger: TGTGCGGGACAACAAGCTCCATGCCTTCATCTGGGA...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGCACCTTCTCTGCCTTaGGTCCGCGCTTGTTGTCAT +
Preference number: 4 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQAPSLP*VRACCH
Trigger: ATGACAACAAGCGCGGACCCAAGGCAGAGAAGGTGC...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCCACTCATTGTGGGCTTaGCATACACGAAGGGTTCTT +
Preference number: 4 (lower is better)
Translates to: RCCAPVARGRHALGHWESHSLWA*HTRRVL
Trigger: AAGAACCCTTCGTGTATGTCAAGCCCACAATGAGTG...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGTCAGGCCCTGGTACTTaGAGGGCTTGGAGAACTCTA +
Preference number: 4 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRSGPGT*RAWRTL
Trigger: TAGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGA...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAATCACGGCCACCACATaGACTGACAGCCCCACCAGC +
Preference number: 4 (lower is better)
Translates to: RAPLGSAATRAVKASPGKITATT*TDSPTS
Trigger: GCTGGTGGGGCTGTCAGTTCATGTGGTGGCCGTGAT...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCAATCACGGCCACCACATaGACTGACAGCCCCACCAGC +
Preference number: 4 (lower is better)
Translates to: RPSRAAGLISVLGRANWAITATT*TDSPTS
Trigger: GCTGGTGGGGCTGTCAGTTCATGTGGTGGCCGTGAT...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCACCCCAATGCCAGAGTTaGGCAGGACGCCCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: RPSRAAGLISVLGRANWAPQCQS*AGRPRK
Trigger: TTTCCTGGGGCGTCCTGCTCAACTCTGGCATTGGGG...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGCCCCAATGCCAGAGTTaGGCAGGACGCCCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWPQCQS*AGRPRK
Trigger: TTTCCTGGGGCGTCCTGCTCAACTCTGGCATTGGGG...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAACCCCAATGCCAGAGTTaGGCAGGACGCCCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: RAPLGSAATRAVKASPGKPQCQS*AGRPRK
Trigger: TTTCCTGGGGCGTCCTGCTCAACTCTGGCATTGGGG...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGCTGAGTCCCAGATaGAGGCATGGAGCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSQLSPR*RHGACC
Trigger: ACAACAAGCTCCATGCCTTCATCTGGGACTCAGCTG...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCACAGCTGAGTCCCAGATaGAGGCATGGAGCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPQLSPR*RHGACC
Trigger: ACAACAAGCTCCATGCCTTCATCTGGGACTCAGCTG...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCCAGCTGAGTCCCAGATaGAGGCATGGAGCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPQLSPR*RHGACC
Trigger: ACAACAAGCTCCATGCCTTCATCTGGGACTCAGCTG...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGAAACTCCAGCACAGCTaGGTCCCAGATGAAGGCATG +
Preference number: 4 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQKLQHS*VPDEGM
Trigger: CATGCCTTCATCTGGGACTCAGCTGTGCTGGAGTTT...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCAAACTCCAGCACAGCTaGGTCCCAGATGAAGGCATG +
Preference number: 4 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPKLQHS*VPDEGM
Trigger: CATGCCTTCATCTGGGACTCAGCTGTGCTGGAGTTT...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGATCGCACTTCTGTaGAGCCTCAAACTCCAGCAC +
Preference number: 4 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSQIALL*SLKLQH
Trigger: GTGCTGGAGTTTGAGGCTTCACAGAAGTGCGATCTG...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAAGGACCTACGTCTCTTaGAGCTGGAGGCCAGGGTGG +
Preference number: 4 (lower is better)
Translates to: RAPLGSAATRAVKASPGKRTYVS*SWRPGW
Trigger: CCACCCTGGCCTCCAGCTTCAAGAGACGTAGGTCCT...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGATTGGCCTGGTTTACTaGCTCGCGGAACATCTGCTC +
Preference number: 4 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQIGLVY*LAEHLL
Trigger: GAGCAGATGTTCCGCGAGGCAGTAAACCAGGCCAAT...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAATTGGCCTGGTTTACTaGCTCGCGGAACATCTGCTC +
Preference number: 4 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPIGLVY*LAEHLL
Trigger: GAGCAGATGTTCCGCGAGGCAGTAAACCAGGCCAAT...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGATTGGCCTGGTTTACTaGCTCGCGGAACATCTGCTC +
Preference number: 4 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRIGLVY*LAEHLL
Trigger: GAGCAGATGTTCCGCGAGGCAGTAAACCAGGCCAAT...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGACAGGCGCTTCTGCGCTaGCCGGCCCTCGTGGTCATC +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARQALLR*PALVVI
Trigger: GATGACCACGAGGGCCGGGCAGCGCAGAAGCGCCTG...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCACAGGCGCTTCTGCGCTaGCCGGCCCTCGTGGTCATC +
Preference number: 4 (lower is better)
Translates to: RREGSALLESGALDIWEPQALLR*PALVVI
Trigger: GATGACCACGAGGGCCGGGCAGCGCAGAAGCGCCTG...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGTTCAGCATCGCGGCTaGGCGGTATACGGTGGCAGC +
Preference number: 4 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWVQHRG*AVYGGS
Trigger: GCTGCCACCGTATACCGCGCAGCCGCGATGCTGAAC...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAATCCAGATGTTGGTGTTaGCCACGCAACCCCGCGGTG +
Preference number: 4 (lower is better)
Translates to: RAPLGSAATRAVKASPGKSRCWC*PRNPAV
Trigger: CACCGCGGGGTTGCGTGGGCAACACCAACATCTGGA...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCGCCAGTCACTCCATCTaGATACTTGGAAGACATCAG +
Preference number: 4 (lower is better)
Translates to: RCCAPVARGRHALGHWESASHSI*ILGRHQ
Trigger: CTGATGTCTTCCAAGTATGCAGATGGAGTGACTGGC...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGGGTACCATTGTAGATaGCCACTTGCACCAGCTTGC +
Preference number: 4 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPGYHCR*PLAPAC
Trigger: GCAAGCTGGTGCAAGTGGGCATCTACAATGGTACCC...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCGGGTACCATTGTAGATaGCCACTTGCACCAGCTTGC +
Preference number: 4 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGGYHCR*PLAPAC
Trigger: GCAAGCTGGTGCAAGTGGGCATCTACAATGGTACCC...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCGCCAAACTTGCCATCTaGCACAAGGTGCACCTCGTA +
Preference number: 4 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGAKLAI*HKVHLV
Trigger: TACGAGGTGCACCTTGTGGCAGATGGCAAGTTTGGC...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCCTGTGTGCCAAACTTaGCATCTGCCACAAGGTGCA +
Preference number: 4 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSPVCQT*HLPQGA
Trigger: TGCACCTTGTGGCAGATGGCAAGTTTGGCACACAGG...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCATTACCCGCTCCTGTGTaGCAAACTTGCCATCTGCCA +
Preference number: 4 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPLPAPV*QTCHLP
Trigger: TGGCAGATGGCAAGTTTGGCACACAGGAGCGGGTAA...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTAGAGGACAGGGTCAGTaGATCCTCCTCCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRRGQGQ*ILLLLL
Trigger: GAGGAGGAGGAGGAGGATGCACTGACCCTGTCCTCT...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCTGTGCCGGTACATGGTaGTCAACTCCACCTGCCTCC +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGCAGTW*STPPAS
Trigger: GGAGGCAGGTGGAGTTGAGCACCATGTACCGGCACA...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGTCCAGGGGCTGTCCTTaGGCATGCCGATGCCAAAGC +
Preference number: 4 (lower is better)
Translates to: VKASPGKGRSQPSEWGGKSRGCP*ACRCQS
Trigger: GCTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGA...CTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGTCCAGGGGCTGTCCTTaGGCATGCCGATGCCAAAGC +
Preference number: 4 (lower is better)
Translates to: SGLPEQQDSSVSLAGLTGSRGCP*ACRCQS
Trigger: GCTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGA...CCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCGACAGGGACACATTTTaGTTCCAGGGGCTGTCCTTG +
Preference number: 4 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSDRDTF*FQGLSL
Trigger: CAAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTC...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGACAGGGACACATTTTaGTTCCAGGGGCTGTCCTTG +
Preference number: 4 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQDRDTF*FQGLSL
Trigger: CAAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTC...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTGGGTGGCAGGGGCATTaGTGCGGGAGTCACATTCTT +
Preference number: 4 (lower is better)
Translates to: APLGSAATRAVKASPGKGGWQGH*CGSHIL
Trigger: AAGAATGTGACTCCCGCAGCAATGCCCCTGCCACCC...ACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGTGGCAGGGGCATTaGTGCGGGAGTCACATTCTT +
Preference number: 4 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLAGWQGH*CGSHIL
Trigger: AAGAATGTGACTCCCGCAGCAATGCCCCTGCCACCC...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGGGGTGGCAGGGGCATTaGTGCGGGAGTCACATTCTT +
Preference number: 4 (lower is better)
Translates to: LALGKVGASPVNGVGRVVGWQGH*CGSHIL
Trigger: AAGAATGTGACTCCCGCAGCAATGCCCCTGCCACCC...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCAAAGCCAGCTGCATCTaGTTCCTACGGGCATCCTTG +
Preference number: 4 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPKASCI*FLRASL
Trigger: CAAGGATGCCCGTAGGAAGCAGATGCAGCTGGCTTT...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGAAAGCCAGCTGCATCTaGTTCCTACGGGCATCCTTG +
Preference number: 4 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQKASCI*FLRASL
Trigger: CAAGGATGCCCGTAGGAAGCAGATGCAGCTGGCTTT...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTTTAGGGTCGGGCTCTaGTCTACCACTCTTTCTATC +
Preference number: 4 (lower is better)
Translates to: RCCAPVARGRHALGHWESFRVGL*STTLSI
Trigger: GATAGAAAGAGTGGTAGAGCAGAGCCCGACCCTAAA...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCGTGTCTTTTTGGTTTTaGAAAGCGCCGCGTCCACCC +
Preference number: 4 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSVSFWF*KAPRPP
Trigger: GGGTGGACGCGGCGCTTTGCAAAACCAAAAAGACAC...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCTGTCGCTTATTGGCCTaGTTTACTGCCTCGCGGAAC +
Preference number: 4 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSCRLLA*FTASRN
Trigger: GTTCCGCGAGGCAGTAAACCAGGCCAATAAGCGACA...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGATGGCGTTGGGCTTGTaGGTGACAGAAGTGGCGTTG +
Preference number: 4 (lower is better)
Translates to: QRAPLGSAATRAVKASPGMALGL*VTEVAL
Trigger: CAACGCCACTTCTGTCACCCACAAGCCCAACGCCAT...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGCTGCCCGGCCCTCGTaGTCATCGCTGACCAGCAGG +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARAARPS*SSLTSR
Trigger: CCTGCTGGTCAGCGATGACCACGAGGGCCGGGCAGC...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGCTGCGCGGTATACGGTaGCAGCGTCGTCCTCGCTTG +
Preference number: 4 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWLRGIR*QRRPRL
Trigger: CAAGCGAGGACGACGCTGCCACCGTATACCGCGCAG...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCACAGCGTCACTGATGTaGGCCGACTCGTTCTTGCCG +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGTASLM*ADSFLP
Trigger: CGGCAAGAACGAGTCGGCCCACATCAGTGACGCTGT...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGCTGTCTTCCAGATGTTaGTGTTGCCCACGCAACCCC +
Preference number: 4 (lower is better)
Translates to: QRAPLGSAATRAVKASPGLSSRC*CCPRNP
Trigger: GGGGTTGCGTGGGCAACACCAACATCTGGAAGACAG...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCCTATCTTTAGTCTGGTaGACATCTGGTATCCTCGAG +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPLSLVW*TSGILE
Trigger: CTCGAGGATACCAGATGTCCACCAGACTAAAGATAG...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCTCACTATCTTTAGTCTaGTGGACATCTGGTATCCTC +
Preference number: 4 (lower is better)
Translates to: VVMRARCPWGRGAARCCASLSLV*WTSGIL
Trigger: GAGGATACCAGATGTCCACCAGACTAAAGATAGTGA...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CGACCCCGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCTACACGAAGGGTTCTTaGTGGATTGTCACTATCTTT +
Preference number: 4 (lower is better)
Translates to: RPRRAPGLCVGQAAVPCVYTKGS*WIVTIF
Trigger: AAAGATAGTGACAATCCACCAAGAACCCTTCGTGTA...GACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACGGGGTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp TCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTATTGTTAATGGTCAGTaGAGCCACGATCATGTCTGC +
Preference number: 4 (lower is better)
Translates to: SCRGCPPGSRAGGREAQGIVNGQ*SHDHVC
Trigger: GCAGACATGATCGTGGCTCCACTGACCATTAACAAT...ACCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGAGAATGGTCAGGCCCTaGTACTTGAAGGGCTTGGAG +
Preference number: 4 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQRMVRP*YLKGLE
Trigger: CTCCAAGCCCTTCAAGTACCAGGGCCTGACCATTCT...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGAGAATGGTCAGGCCCTaGTACTTGAAGGGCTTGGAG +
Preference number: 4 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRRMVRP*YLKGLE
Trigger: CTCCAAGCCCTTCAAGTACCAGGGCCTGACCATTCT...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCAGAATGGTCAGGCCCTaGTACTTGAAGGGCTTGGAG +
Preference number: 4 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGRMVRP*YLKGLE
Trigger: CTCCAAGCCCTTCAAGTACCAGGGCCTGACCATTCT...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGCCCAGGAAAACCACATaGCAGAGGACAGGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: QRAPLGSAATRAVKASPGPRKTT*QRTGSV
Trigger: CACTGACCCTGTCCTCTGCCATGTGGTTTTCCTGGG...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATCCCAGGAAAACCACATaGCAGAGGACAGGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: APQWLGEGTRLDTGRASHPRKTT*QRTGSV
Trigger: CACTGACCCTGTCCTCTGCCATGTGGTTTTCCTGGG...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTCCATGTGCCGGTACATaGTGCTCAACTCCACCTGCC +
Preference number: 4 (lower is better)
Translates to: ASLRPSRAAGLISVLGRAPCAGT*CSTPPA
Trigger: GGCAGGTGGAGTTGAGCACCATGTACCGGCACATGG...AGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGCCATGTGCCGGTACATaGTGCTCAACTCCACCTGCC +
Preference number: 4 (lower is better)
Translates to: LALGKVGASPVNGVGRVVPCAGT*CSTPPA
Trigger: GGCAGGTGGAGTTGAGCACCATGTACCGGCACATGG...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCCATGTGCCGGTACATaGTGCTCAACTCCACCTGCC +
Preference number: 4 (lower is better)
Translates to: APLGSAATRAVKASPGKGPCAGT*CSTPPA
Trigger: GGCAGGTGGAGTTGAGCACCATGTACCGGCACATGG...ACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAACCCGCACAGCCTGGATaGCCTCAGCTGCACTCTCAT +
Preference number: 4 (lower is better)
Translates to: RAPLGSAATRAVKASPGKPAQPG*PQLHSH
Trigger: ATGAGAGTGCAGCTGAGGCCATCCAGGCTGTGCGGG...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCCCGCACAGCCTGGATaGCCTCAGCTGCACTCTCAT +
Preference number: 4 (lower is better)
Translates to: SGLPEQQDSSVSLAGLTGPAQPG*PQLHSH
Trigger: ATGAGAGTGCAGCTGAGGCCATCCAGGCTGTGCGGG...CCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGTTGCCGTTGATTAGCTaGAGTCCGATGATGCCGTCA +
Preference number: 4 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQLPLIS*SPMMPS
Trigger: TGACGGCATCATCGGACTTCAGCTAATCAACGGCAA...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCATTGCCGTTGATTAGCTaGAGTCCGATGATGCCGTCA +
Preference number: 4 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPLPLIS*SPMMPS
Trigger: TGACGGCATCATCGGACTTCAGCTAATCAACGGCAA...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCTTGCCGTTGATTAGCTaGAGTCCGATGATGCCGTCA +
Preference number: 4 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPLPLIS*SPMMPS
Trigger: TGACGGCATCATCGGACTTCAGCTAATCAACGGCAA...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCTTGCCGTTGATTAGCTaGAGTCCGATGATGCCGTCA +
Preference number: 4 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSLPLIS*SPMMPS
Trigger: TGACGGCATCATCGGACTTCAGCTAATCAACGGCAA...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGTCCCCATCCTCATTaGATTCCACACGGCCAGTCA +
Preference number: 4 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLAGPHPH*IPHGQS
Trigger: TGACTGGCCGTGTGGAATTCAATGAGGATGGGGACC...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTGGTCCCCATCCTCATTaGATTCCACACGGCCAGTCA +
Preference number: 4 (lower is better)
Translates to: ASLRPSRAAGLISVLGRAGPHPH*IPHGQS
Trigger: TGACTGGCCGTGTGGAATTCAATGAGGATGGGGACC...AGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCGGTCCCCATCCTCATTaGATTCCACACGGCCAGTCA +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGGPHPH*IPHGQS
Trigger: TGACTGGCCGTGTGGAATTCAATGAGGATGGGGACC...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCGGTTCTGCAGGTTCATaGTACTATAGTTGGCAAACT +
Preference number: 4 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPGSAGS*YYSWQT
Trigger: AGTTTGCCAACTATAGTATCATGAACCTGCAGAACC...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCAAAGGGCTGCATGAATaGGTCCAGTGTGCTCCGAGG +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGKGLHE*VQCAPR
Trigger: CCTCGGAGCACACTGGACTCATTCATGCAGCCCTTT...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGCCCCAATGCCAGAGTTaGGCAGGACGCCCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWPQCQS*AGRPRK
Trigger: TTTCCTGGGGCGTCCTGCTCAACTCTGGCATTGGGG...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAATAGATGAACTTGTCTaGGGGGTTTCTGAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPIDELV*GVSEPG
Trigger: CCCAGGCTCAGAAACCCCTCAGACAAGTTCATCTAT...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCATAGATGAACTTGTCTaGGGGGTTTCTGAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPIDELV*GVSEPG
Trigger: CCCAGGCTCAGAAACCCCTCAGACAAGTTCATCTAT...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGTTACAGTTGCATAGATaGACTTGTCTGAGGGGTTTC +
Preference number: 4 (lower is better)
Translates to: RRAPGLCVGQAAVPCVCLLQLHR*TCLRGF
Trigger: GAAACCCCTCAGACAAGTTCATCTATGCAACTGTAA...CAGACAGACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp TCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTTTACAGTTGCATAGATaGACTTGTCTGAGGGGTTTC +
Preference number: 4 (lower is better)
Translates to: SCRGCPPGSRAGGREAQGLQLHR*TCLRGF
Trigger: GAAACCCCTCAGACAAGTTCATCTATGCAACTGTAA...ACCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGCATTCTCATGGGACTTaGGTATGGACAGGGACACAT +
Preference number: 4 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQHSHGT*VWTGTH
Trigger: ATGTGTCCCTGTCCATACTCAAGTCCCATGAGAATG...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTGACCGAGGGATCTGAGAGGTTGAGCGGGCCCGTGATATCAGTGGGATGGTACACATCTGCTCGTGCTTaGGCGTGCTCAGCACCGCGC +
Preference number: 4 (lower is better)
Translates to: LTEGSERLSGPVISVGWYTSARA*ACSAPR
Trigger: GCGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGT...GTACCATCCCACTGATATCACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGAAAATTCATGGTCCGTaGCAGCTTGATGAGCAGGTC +
Preference number: 4 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQKIHGP*QLDEQV
Trigger: GACCTGCTCATCAAGCTGGCACGGACCATGAATTTT...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATTTACCCGCTCCTGTGTaGCAAACTTGCCATCTGCCA +
Preference number: 4 (lower is better)
Translates to: APQWLGEGTRLDTGRASHLPAPV*QTCHLP
Trigger: TGGCAGATGGCAAGTTTGGCACACAGGAGCGGGTAA...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATAGCCACGATCATGTCTaGTTGACCACTGAGCAGCTC +
Preference number: 4 (lower is better)
Translates to: APQWLGEGTRLDTGRASHSHDHV*LTTEQL
Trigger: GAGCTGCTCAGTGGTCAAGCAGACATGATCGTGGCT...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCAAGAGGACAGGGTCAGTaGATCCTCCTCCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: RPSRAAGLISVLGRANWARGQGQ*ILLLLL
Trigger: GAGGAGGAGGAGGAGGATGCACTGACCCTGTCCTCT...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCATGTGCCGGTACATGGTaGTCAACTCCACCTGCCTCC +
Preference number: 4 (lower is better)
Translates to: RPSRAAGLISVLGRANWACAGTW*STPPAS
Trigger: GGAGGCAGGTGGAGTTGAGCACCATGTACCGGCACA...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGGACAGGGACACATTTTaGTTCCAGGGGCTGTCCTTG +
Preference number: 4 (lower is better)
Translates to: QRAPLGSAATRAVKASPGDRDTF*FQGLSL
Trigger: CAAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTC...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGGTGGCAGGGGCATTaGTGCGGGAGTCACATTCTT +
Preference number: 4 (lower is better)
Translates to: RAPLGSAATRAVKASPGKGWQGH*CGSHIL
Trigger: AAGAATGTGACTCCCGCAGCAATGCCCCTGCCACCC...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGCAGCATGAAGACCCCTaGCATGTTCTCAAAAGTGAG +
Preference number: 4 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQQHEDP*HVLKSE
Trigger: CTCACTTTTGAGAACATGGCAGGGGTCTTCATGCTG...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCCCACACGTTCACGGCTaGAAAAGCCAGCTGCATCTG +
Preference number: 4 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLAPHVHG*KSQLHL
Trigger: CAGATGCAGCTGGCTTTTGCAGCCGTGAACGTGTGG...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCACCACTCTTTCTATCCTaGAGGTTCTTCCTCCACACG +
Preference number: 4 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPPLFLS*RFFLHT
Trigger: CGTGTGGAGGAAGAACCTGCAGGATAGAAAGAGTGG...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGGTGTCTTTTTGGTTTTaGAAAGCGCCGCGTCCACCC +
Preference number: 4 (lower is better)
Translates to: QRAPLGSAATRAVKASPGVSFWF*KAPRPP
Trigger: GGGTGGACGCGGCGCTTTGCAAAACCAAAAAGACAC...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATTGTCGCTTATTGGCCTaGTTTACTGCCTCGCGGAAC +
Preference number: 4 (lower is better)
Translates to: APQWLGEGTRLDTGRASHCRLLA*FTASRN
Trigger: GTTCCGCGAGGCAGTAAACCAGGCCAATAAGCGACA...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGACAGCGTCACTGATGTaGGCCGACTCGTTCTTGCCG +
Preference number: 4 (lower is better)
Translates to: SGLPEQQDSSVSLAGLTGTASLM*ADSFLP
Trigger: CGGCAAGAACGAGTCGGCCCACATCAGTGACGCTGT...CCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCACGCAACCCCGCGGTaGATCAGTGATGTTCTCCTT +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGHATPR*ISDVLL
Trigger: AAGGAGAACATCACTGATCCACCGCGGGGTTGCGTG...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGCACGCAACCCCGCGGTaGATCAGTGATGTTCTCCTT +
Preference number: 4 (lower is better)
Translates to: LALGKVGASPVNGVGRVVHATPR*ISDVLL
Trigger: AAGGAGAACATCACTGATCCACCGCGGGGTTGCGTG...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTCTGTCTTCCAGATGTTaGTGTTGCCCACGCAACCCC +
Preference number: 4 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRLSSRC*CCPRNP
Trigger: GGGGTTGCGTGGGCAACACCAACATCTGGAAGACAG...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCAGTCTGGTGGACATCTaGTATCCTCGAGGCTTCTCT +
Preference number: 4 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGSLVDI*YPRGFS
Trigger: AGAGAAGCCTCGAGGATACCAGATGTCCACCAGACT...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGCCATGTGCCGGTACATaGTGCTCAACTCCACCTGCC +
Preference number: 4 (lower is better)
Translates to: VKASPGKGRSQPSEWGGKPCAGT*CSTPPA
Trigger: GGCAGGTGGAGTTGAGCACCATGTACCGGCACATGG...CTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCCATGTGCCGGTACATaGTGCTCAACTCCACCTGCC +
Preference number: 4 (lower is better)
Translates to: SGLPEQQDSSVSLAGLTGPCAGT*CSTPPA
Trigger: GGCAGGTGGAGTTGAGCACCATGTACCGGCACATGG...CCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGGTGATATCAGTGGGATaGTACTGCTGCAGGTTCTTC +
Preference number: 4 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQVISVG*YCCRFF
Trigger: GAAGAACCTGCAGCAGTACCATCCCACTGATATCAC...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114312.2
ENSMUST00000114317.10
CDS-3UTR CCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGGCACCTTCTCTGCCTTaGGTCCGCGCTTGTTGTCAT +
Preference number: 4 (lower is better)
Translates to: LALGKVGASPVNGVGRVVAPSLP*VRACCH
Trigger: ATGACAACAAGCGCGGACCCAAGGCAGAGAAGGTGC...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114317.10
ENSMUST00000114318.10
3UTR CAA 72 bp CCTCACACCACGGTGCTGACCGAGGGATCTGAGAGGTaGAGCGGGCCCGTGATATCAGTGGGATGGTACTGC +
Preference number: 4 (lower is better)
Translates to: PHTTVLTEGSER*SGPVISVGWYC
Trigger: GCAGTACCATCCCACTGATATCACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAGCACCGTGGTGTGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCTCCTCCTGGCCAGATaGTCTTCCTGTCATTTGGGA +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGLLLAR*SSCHLG
Trigger: TCCCAAATGACAGGAAGATCATCTGGCCAGGAGGAG...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCCACTCATTGTGGGCTTaGCATACACGAAGGGTTCTT +
Preference number: 4 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGHSLWA*HTRRVL
Trigger: AAGAACCCTTCGTGTATGTCAAGCCCACAATGAGTG...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCACTGGGGCACTGTGTaGCGTGGGCTTCCTGGGGAT +
Preference number: 4 (lower is better)
Translates to: DRREGSALLESGALDIWEHWGTV*RGLPGD
Trigger: ATCCCCAGGAAGCCCACGTCACACAGTGCCCCAGTG...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGACACTGGGGCACTGTGTaGCGTGGGCTTCCTGGGGAT +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARHWGTV*RGLPGD
Trigger: ATCCCCAGGAAGCCCACGTCACACAGTGCCCCAGTG...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGAAAGGGCTGCATGAATaGGTCCAGTGTGCTCCGAGG +
Preference number: 4 (lower is better)
Translates to: VKASPGKGRSQPSEWGGKKGLHE*VQCAPR
Trigger: CCTCGGAGCACACTGGACTCATTCATGCAGCCCTTT...CTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCCAGCTGAGTCCCAGATaGAGGCATGGAGCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLAQLSPR*RHGACC
Trigger: ACAACAAGCTCCATGCCTTCATCTGGGACTCAGCTG...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCAGCTGAGTCCCAGATaGAGGCATGGAGCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGQLSPR*RHGACC
Trigger: ACAACAAGCTCCATGCCTTCATCTGGGACTCAGCTG...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGAAACTCCAGCACAGCTaGGTCCCAGATGAAGGCATG +
Preference number: 4 (lower is better)
Translates to: LALGKVGASPVNGVGRVVKLQHS*VPDEGM
Trigger: CATGCCTTCATCTGGGACTCAGCTGTGCTGGAGTTT...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCGGGAGTCACATTCTTaGTACCGAACCCATGTCTTA +
Preference number: 4 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSRESHS*YRTHVL
Trigger: TAAGACATGGGTTCGGTATCAAGAATGTGACTCCCG...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGCGGGAGTCACATTCTTaGTACCGAACCCATGTCTTA +
Preference number: 4 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRRESHS*YRTHVL
Trigger: TAAGACATGGGTTCGGTATCAAGAATGTGACTCCCG...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGGACCTACGTCTCTTaGAGCTGGAGGCCAGGGTGG +
Preference number: 4 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGARTYVS*SWRPGW
Trigger: CCACCCTGGCCTCCAGCTTCAAGAGACGTAGGTCCT...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCTGACCGAGGGATCTaGGAGGTTGAGCGGGCCCGT +
Preference number: 4 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGADRGI*EVERAR
Trigger: ACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAGC...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGACATCTGCTCGTGCTTaGGCGTGCTCAGCACCGCGC +
Preference number: 4 (lower is better)
Translates to: DRREGSALLESGALDIWETSARA*ACSAPR
Trigger: GCGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGT...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTATTGGCCTGGTTTACTaGCTCGCGGAACATCTGCTC +
Preference number: 4 (lower is better)
Translates to: APLGSAATRAVKASPGKGIGLVY*LAEHLL
Trigger: GAGCAGATGTTCCGCGAGGCAGTAAACCAGGCCAAT...ACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGAGTAGGGTGGTACGGTaGGAAGGAAGCTCAGGTGGA +
Preference number: 4 (lower is better)
Translates to: VKASPGKGRSQPSEWGGKSRVVR*EGSSGG
Trigger: TCCACCTGAGCTTCCTTCGCACCGTACCACCCTACT...CTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCAAGCGTCGTCCTCGCTTaGAGAAAGGATGATGACCCG +
Preference number: 4 (lower is better)
Translates to: RPSRAAGLISVLGRANWASVVLA*RKDDDP
Trigger: CGGGTCATCATCCTTTCTGCAAGCGAGGACGACGCT...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGAGCGTCGTCCTCGCTTaGAGAAAGGATGATGACCCG +
Preference number: 4 (lower is better)
Translates to: VKASPGKGRSQPSEWGGKSVVLA*RKDDDP
Trigger: CGGGTCATCATCCTTTCTGCAAGCGAGGACGACGCT...CTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCTCCAGATGTTGGTGTTaGCCACGCAACCCCGCGGTG +
Preference number: 4 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGASRCWC*PRNPAV
Trigger: CACCGCGGGGTTGCGTGGGCAACACCAACATCTGGA...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGCCAGTCACTCCATCTaGATACTTGGAAGACATCAG +
Preference number: 4 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQASHSI*ILGRHQ
Trigger: CTGATGTCTTCCAAGTATGCAGATGGAGTGACTGGC...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAAAAATTCATGGTCCGTaGCAGCTTGATGAGCAGGTC +
Preference number: 4 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPKIHGP*QLDEQV
Trigger: GACCTGCTCATCAAGCTGGCACGGACCATGAATTTT...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGCCAAACTTGCCATCTaGCACAAGGTGCACCTCGTA +
Preference number: 4 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLAAKLAI*HKVHLV
Trigger: TACGAGGTGCACCTTGTGGCAGATGGCAAGTTTGGC...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCGCCAAACTTGCCATCTaGCACAAGGTGCACCTCGTA +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGAKLAI*HKVHLV
Trigger: TACGAGGTGCACCTTGTGGCAGATGGCAAGTTTGGC...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCTTACCCGCTCCTGTGTaGCAAACTTGCCATCTGCCA +
Preference number: 4 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLALPAPV*QTCHLP
Trigger: TGGCAGATGGCAAGTTTGGCACACAGGAGCGGGTAA...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCAGCCACGATCATGTCTaGTTGACCACTGAGCAGCTC +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGSHDHV*LTTEQL
Trigger: GAGCTGCTCAGTGGTCAAGCAGACATGATCGTGGCT...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCACTGGATGGCCTCAGCTaGACTCTCATAATTGTGCTT +
Preference number: 4 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPLDGLS*TLIIVL
Trigger: AAGCACAATTATGAGAGTGCAGCTGAGGCCATCCAG...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTGACCGAGGGATCTGAGAGGTTGAGCGGGCCCGTGATATCAGTGGGATGGTACTCCAGGGGCTGTCCTTaGGCATGCCGATGCCAAAGC +
Preference number: 4 (lower is better)
Translates to: LTEGSERLSGPVISVGWYSRGCP*ACRCQS
Trigger: GCTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGA...GTACCATCCCACTGATATCACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCACAGCATGAAGACCCCTaGCATGTTCTCAAAAGTGAG +
Preference number: 4 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPQHEDP*HVLKSE
Trigger: CTCACTTTTGAGAACATGGCAGGGGTCTTCATGCTG...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTAAAGCCAGCTGCATCTaGTTCCTACGGGCATCCTTG +
Preference number: 4 (lower is better)
Translates to: APLGSAATRAVKASPGKGKASCI*FLRASL
Trigger: CAAGGATGCCCGTAGGAAGCAGATGCAGCTGGCTTT...ACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGACCACCCCCGGTGCTCTaGAGGTTCTTCCTCCACACG +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARPPPVL*RFFLHT
Trigger: CGTGTGGAGGAAGAACCTGCAGAGCACCGGGGGTGG...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000114307.8
ENSMUST00000114308.10
CDS-3UTR CCA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTTGTCGCTTATTGGCCTaGTTTACTGCCTCGCGGAAC +
Preference number: 4 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRCRLLA*FTASRN
Trigger: GTTCCGCGAGGCAGTAAACCAGGCCAATAAGCGACA...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGGGGTGGGAGTGAAGTaGTCGTTGGGAGTAGGCGGG +
Preference number: 4 (lower is better)
Translates to: RREGSALLESGALDIWEPGVGVK*SLGVGG
Trigger: CCCGCCTACTCCCAACGACCACTTCACTCCCACCCC...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGGGGGTGGGAGTGAAGTaGTCGTTGGGAGTAGGCGGG +
Preference number: 4 (lower is better)
Translates to: DRREGSALLESGALDIWEGVGVK*SLGVGG
Trigger: CCCGCCTACTCCCAACGACCACTTCACTCCCACCCC...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGCTGGTGGGAGTAGGGTaGTACGGTGCGAAGGAAGCT +
Preference number: 4 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWLVGVG*YGAKEA
Trigger: AGCTTCCTTCGCACCGTACCACCCTACTCCCACCAG...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAATCTCAAACCAGACGCTaGACTGGTGGGAGTAGGGTG +
Preference number: 4 (lower is better)
Translates to: RAPLGSAATRAVKASPGKSQTRR*TGGSRV
Trigger: CACCCTACTCCCACCAGTCCAGCGTCTGGTTTGAGA...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGGCTGCCCGGCCCTCGTaGTCATCGCTGACCAGCAGG +
Preference number: 4 (lower is better)
Translates to: CCKIEIHRQGGPLAPTSGAARPS*SSLTSR
Trigger: CCTGCTGGTCAGCGATGACCACGAGGGCCGGGCAGC...CCCCGACGTCGGAGCTAACGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGCACATTCTTGGTTCCTaGGTCAAACTGCAGCACCTT +
Preference number: 4 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRHILGS*VKLQHL
Trigger: AAGGTGCTGCAGTTTGACCCAGGAACCAAGAATGTG...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCACACATTCTTGGTTCCTaGGTCAAACTGCAGCACCTT +
Preference number: 4 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPHILGS*VKLQHL
Trigger: AAGGTGCTGCAGTTTGACCCAGGAACCAAGAATGTG...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCTGCGCGGTATACGGTaGCAGCGTCGTCCTCGCTTG +
Preference number: 4 (lower is better)
Translates to: DRREGSALLESGALDIWELRGIR*QRRPRL
Trigger: CAAGCGAGGACGACGCTGCCACCGTATACCGCGCAG...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCACACGCAACCCCGCGGTaGATCAGTGATGTTCTCCTT +
Preference number: 4 (lower is better)
Translates to: RPSRAAGLISVLGRANWAHATPR*ISDVLL
Trigger: AAGGAGAACATCACTGATCCACCGCGGGGTTGCGTG...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCACGCAACCCCGCGGTaGATCAGTGATGTTCTCCTT +
Preference number: 4 (lower is better)
Translates to: SGLPEQQDSSVSLAGLTGHATPR*ISDVLL
Trigger: AAGGAGAACATCACTGATCCACCGCGGGGTTGCGTG...CCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGCTGTCTTCCAGATGTTaGTGTTGCCCACGCAACCCC +
Preference number: 4 (lower is better)
Translates to: VKASPGKGRSQPSEWGGKLSSRC*CCPRNP
Trigger: GGGGTTGCGTGGGCAACACCAACATCTGGAAGACAG...CTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGCTCCATCTGCATACTTaGAAGACATCAGCACCCTCT +
Preference number: 4 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRLHLHT*KTSAPS
Trigger: AGAGGGTGCTGATGTCTTCCAAGTATGCAGATGGAG...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCTCCATCTGCATACTTaGAAGACATCAGCACCCTCT +
Preference number: 4 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSLHLHT*KTSAPS
Trigger: AGAGGGTGCTGATGTCTTCCAAGTATGCAGATGGAG...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATAGTCTGGTGGACATCTaGTATCCTCGAGGCTTCTCT +
Preference number: 4 (lower is better)
Translates to: APQWLGEGTRLDTGRASHSLVDI*YPRGFS
Trigger: AGAGAAGCCTCGAGGATACCAGATGTCCACCAGACT...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGAAGGCTGCCAGGTTaGCAGTGTAGGAAGCCACGA +
Preference number: 4 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWGRLPG*QCRKPR
Trigger: TCGTGGCTTCCTACACTGCCAACCTGGCAGCCTTCC...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCTCCCAGATGAAGGCATaGAGCTTGTTGTCCCGCACA +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGSQMKA*SLLSRT
Trigger: TGTGCGGGACAACAAGCTCCATGCCTTCATCTGGGA...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTTCCCAGATGAAGGCATaGAGCTTGTTGTCCCGCACA +
Preference number: 4 (lower is better)
Translates to: ASLRPSRAAGLISVLGRASQMKA*SLLSRT
Trigger: TGTGCGGGACAACAAGCTCCATGCCTTCATCTGGGA...AGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTTCCCAGATGAAGGCATaGAGCTTGTTGTCCCGCACA +
Preference number: 4 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRSQMKA*SLLSRT
Trigger: TGTGCGGGACAACAAGCTCCATGCCTTCATCTGGGA...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGAGCACTGTGTCTTTTTaGTTTTGCAAAGCGCCGCGT +
Preference number: 4 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRSTVSF*FCKAPR
Trigger: ACGCGGCGCTTTGCAAAACCAAAAAGACACAGTGCT...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCGTGATATCAGTGGGATaGTACTGCGTGTCTTTGGAG +
Preference number: 4 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPVISVG*YCVSLE
Trigger: CTCCAAAGACACGCAGTACCATCCCACTGATATCAC...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTTTGCCGTTGATTAGCTaGAGTCCGATGATGCCGTCA +
Preference number: 4 (lower is better)
Translates to: ASLRPSRAAGLISVLGRALPLIS*SPMMPS
Trigger: TGACGGCATCATCGGACTTCAGCTAATCAACGGCAA...AGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGGGTTCTGCAGGTTCATaGTACTATAGTTGGCAAACT +
Preference number: 4 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQGSAGS*YYSWQT
Trigger: AGTTTGCCAACTATAGTATCATGAACCTGCAGAACC...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGCTCCTCCTGGCCAGATaGTCTTCCTGTCATTTGGGA +
Preference number: 4 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWLLLAR*SSCHLG
Trigger: TCCCAAATGACAGGAAGATCATCTGGCCAGGAGGAG...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGCACTCATTGTGGGCTTaGCATACACGAAGGGTTCTT +
Preference number: 4 (lower is better)
Translates to: QRAPLGSAATRAVKASPGHSLWA*HTRRVL
Trigger: AAGAACCCTTCGTGTATGTCAAGCCCACAATGAGTG...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAATCACGGCCACCACATaGACTGACAGCCCCACCAGC +
Preference number: 4 (lower is better)
Translates to: RREGSALLESGALDIWEPITATT*TDSPTS
Trigger: GCTGGTGGGGCTGTCAGTTCATGTGGTGGCCGTGAT...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCATAGATGAACTTGTCTaGGGGGTTTCTGAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGIDELV*GVSEPG
Trigger: CCCAGGCTCAGAAACCCCTCAGACAAGTTCATCTAT...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGCAGATCGCACTTCTGTaGAGCCTCAAACTCCAGCAC +
Preference number: 4 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWQIALL*SLKLQH
Trigger: GTGCTGGAGTTTGAGGCTTCACAGAAGTGCGATCTG...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGCATTCTCATGGGACTTaGGTATGGACAGGGACACAT +
Preference number: 4 (lower is better)
Translates to: QRAPLGSAATRAVKASPGHSHGT*VWTGTH
Trigger: ATGTGTCCCTGTCCATACTCAAGTCCCATGAGAATG...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATCGGGAGTCACATTCTTaGTACCGAACCCATGTCTTA +
Preference number: 4 (lower is better)
Translates to: APQWLGEGTRLDTGRASHRESHS*YRTHVL
Trigger: TAAGACATGGGTTCGGTATCAAGAATGTGACTCCCG...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCGGAACATCTGCTCGTaGTTGCGCGTGCTCAGCACC +
Preference number: 4 (lower is better)
Translates to: DRREGSALLESGALDIWERNICS*LRVLST
Trigger: GGTGCTGAGCACGCGCAAGCACGAGCAGATGTTCCG...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCACGGAACATCTGCTCGTaGTTGCGCGTGCTCAGCACC +
Preference number: 4 (lower is better)
Translates to: RREGSALLESGALDIWEPRNICS*LRVLST
Trigger: GGTGCTGAGCACGCGCAAGCACGAGCAGATGTTCCG...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAATTGGCCTGGTTTACTaGCTCGCGGAACATCTGCTC +
Preference number: 4 (lower is better)
Translates to: RAPLGSAATRAVKASPGKIGLVY*LAEHLL
Trigger: GAGCAGATGTTCCGCGAGGCAGTAAACCAGGCCAAT...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCATCCAGATGTTGGTGTTaGCCACGCAACCCCGCGGTG +
Preference number: 4 (lower is better)
Translates to: RREGSALLESGALDIWEPSRCWC*PRNPAV
Trigger: CACCGCGGGGTTGCGTGGGCAACACCAACATCTGGA...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGATCCAGATGTTGGTGTTaGCCACGCAACCCCGCGGTG +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARSRCWC*PRNPAV
Trigger: CACCGCGGGGTTGCGTGGGCAACACCAACATCTGGA...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGGTACCATTGTAGATaGCCACTTGCACCAGCTTGC +
Preference number: 4 (lower is better)
Translates to: RAPLGSAATRAVKASPGKGYHCR*PLAPAC
Trigger: GCAAGCTGGTGCAAGTGGGCATCTACAATGGTACCC...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATAAAATTCATGGTCCGTaGCAGCTTGATGAGCAGGTC +
Preference number: 4 (lower is better)
Translates to: APQWLGEGTRLDTGRASHKIHGP*QLDEQV
Trigger: GACCTGCTCATCAAGCTGGCACGGACCATGAATTTT...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGGAAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTATTACCCGCTCCTGTGTaGCAAACTTGCCATCTGCCA +
Preference number: 4 (lower is better)
Translates to: RKDGAAISAPGSSDRGHLLPAPV*QTCHLP
Trigger: TGGCAGATGGCAAGTTTGGCACACAGGAGCGGGTAA...TAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGTCCACTCCTTTTTGTTaGTGTTGTTTACCCGCTCCT +
Preference number: 4 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRSTPFC*CCLPAP
Trigger: AGGAGCGGGTAAACAACAGCAACAAAAAGGAGTGGA...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCTCCACTCCTTTTTGTTaGTGTTGTTTACCCGCTCCT +
Preference number: 4 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPSTPFC*CCLPAP
Trigger: AGGAGCGGGTAAACAACAGCAACAAAAAGGAGTGGA...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGAGCCACGATCATGTCTaGTTGACCACTGAGCAGCTC +
Preference number: 4 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWSHDHV*LTTEQL
Trigger: GAGCTGCTCAGTGGTCAAGCAGACATGATCGTGGCT...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGAGCCACGATCATGTCTaGTTGACCACTGAGCAGCTC +
Preference number: 4 (lower is better)
Translates to: VKASPGKGRSQPSEWGGKSHDHV*LTTEQL
Trigger: GAGCTGCTCAGTGGTCAAGCAGACATGATCGTGGCT...CTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTGACCGAGGGATCTGAGAGGTTGAGCGGGCCCGTGATATCAGTGGGATGGTACAGAGGACAGGGTCAGTaGATCCTCCTCCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: LTEGSERLSGPVISVGWYRGQGQ*ILLLLL
Trigger: GAGGAGGAGGAGGAGGATGCACTGACCCTGTCCTCT...GTACCATCCCACTGATATCACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATCTGGATGGCCTCAGCTaGACTCTCATAATTGTGCTT +
Preference number: 4 (lower is better)
Translates to: APQWLGEGTRLDTGRASHLDGLS*TLIIVL
Trigger: AAGCACAATTATGAGAGTGCAGCTGAGGCCATCCAG...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGATCCAGGGGCTGTCCTTaGGCATGCCGATGCCAAAGC +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARSRGCP*ACRCQS
Trigger: GCTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGA...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTTCAGTGGGATGGTACTaGGTGTCTTTGGAGGACCTA +
Preference number: 4 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRSVGWY*VSLEDL
Trigger: TAGGTCCTCCAAAGACACGCAGTACCATCCCACTGA...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCCTGGTGGGAGTAGGGTaGTACGGTGCGAAGGAAGCT +
Preference number: 4 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGALVGVG*YGAKEA
Trigger: AGCTTCCTTCGCACCGTACCACCCTACTCCCACCAG...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGTCTCAAACCAGACGCTaGACTGGTGGGAGTAGGGTG +
Preference number: 4 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWSQTRR*TGGSRV
Trigger: CACCCTACTCCCACCAGTCCAGCGTCTGGTTTGAGA...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCGCACCTTCTCTGCCTTaGACTCACGCTCCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGAAPSLP*THAPPA
Trigger: TGCTGGAGGAGCGTGAGTCCAAGGCAGAGAAGGTGC...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114312.2
ENSMUST00000114314.10
CDS-3UTR CCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGCACGCAACCCCGCGGTaGATCAGTGATGTTCTCCTT +
Preference number: 4 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWHATPR*ISDVLL
Trigger: AAGGAGAACATCACTGATCCACCGCGGGGTTGCGTG...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTAGTCTGGTGGACATCTaGTATCCTCGAGGCTTCTCT +
Preference number: 4 (lower is better)
Translates to: APLGSAATRAVKASPGKGSLVDI*YPRGFS
Trigger: AGAGAAGCCTCGAGGATACCAGATGTCCACCAGACT...ACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAGTCTGGTGGACATCTaGTATCCTCGAGGCTTCTCT +
Preference number: 4 (lower is better)
Translates to: ASLRPSRAAGLISVLGRASLVDI*YPRGFS
Trigger: AGAGAAGCCTCGAGGATACCAGATGTCCACCAGACT...AGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGCTATCTTTAGTCTGGTaGACATCTGGTATCCTCGAG +
Preference number: 4 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQLSLVW*TSGILE
Trigger: CTCGAGGATACCAGATGTCCACCAGACTAAAGATAG...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCCTATCTTTAGTCTGGTaGACATCTGGTATCCTCGAG +
Preference number: 4 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPLSLVW*TSGILE
Trigger: CTCGAGGATACCAGATGTCCACCAGACTAAAGATAG...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCCGCACAGCCTGGATaGCCTCAGCTGCACTCTCAT +
Preference number: 4 (lower is better)
Translates to: DRREGSALLESGALDIWEPAQPG*PQLHSH
Trigger: ATGAGAGTGCAGCTGAGGCCATCCAGGCTGTGCGGG...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGTCCCAGATGAAGGCATaGAGCTTGTTGTCCCGCACA +
Preference number: 4 (lower is better)
Translates to: SGLPEQQDSSVSLAGLTGSQMKA*SLLSRT
Trigger: TGTGCGGGACAACAAGCTCCATGCCTTCATCTGGGA...CCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCGGTCCCCATCCTCATTaGATTCCACACGGCCAGTCA +
Preference number: 4 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGAGPHPH*IPHGQS
Trigger: TGACTGGCCGTGTGGAATTCAATGAGGATGGGGACC...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCGGTTCTGCAGGTTCATaGTACTATAGTTGGCAAACT +
Preference number: 4 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSGSAGS*YYSWQT
Trigger: AGTTTGCCAACTATAGTATCATGAACCTGCAGAACC...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGCACTCATTGTGGGCTTaGCATACACGAAGGGTTCTT +
Preference number: 4 (lower is better)
Translates to: LALGKVGASPVNGVGRVVHSLWA*HTRRVL
Trigger: AAGAACCCTTCGTGTATGTCAAGCCCACAATGAGTG...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAAAGGGCTGCATGAATaGGTCCAGTGTGCTCCGAGG +
Preference number: 4 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGAKGLHE*VQCAPR
Trigger: CCTCGGAGCACACTGGACTCATTCATGCAGCCCTTT...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAATCACGGCCACCACATaGACTGACAGCCCCACCAGC +
Preference number: 4 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGITATT*TDSPTS
Trigger: GCTGGTGGGGCTGTCAGTTCATGTGGTGGCCGTGAT...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCTTACAGTTGCATAGATaGACTTGTCTGAGGGGTTTC +
Preference number: 4 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGLQLHR*TCLRGF
Trigger: GAAACCCCTCAGACAAGTTCATCTATGCAACTGTAA...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGTTACAGTTGCATAGATaGACTTGTCTGAGGGGTTTC +
Preference number: 4 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRLQLHR*TCLRGF
Trigger: GAAACCCCTCAGACAAGTTCATCTATGCAACTGTAA...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGTTACAGTTGCATAGATaGACTTGTCTGAGGGGTTTC +
Preference number: 4 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQLQLHR*TCLRGF
Trigger: GAAACCCCTCAGACAAGTTCATCTATGCAACTGTAA...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCTTACAGTTGCATAGATaGACTTGTCTGAGGGGTTTC +
Preference number: 4 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPLQLHR*TCLRGF
Trigger: GAAACCCCTCAGACAAGTTCATCTATGCAACTGTAA...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGCAGATCGCACTTCTGTaGAGCCTCAAACTCCAGCAC +
Preference number: 4 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWQIALL*SLKLQH
Trigger: GTGCTGGAGTTTGAGGCTTCACAGAAGTGCGATCTG...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGCATTCTCATGGGACTTaGGTATGGACAGGGACACAT +
Preference number: 4 (lower is better)
Translates to: LALGKVGASPVNGVGRVVHSHGT*VWTGTH
Trigger: ATGTGTCCCTGTCCATACTCAAGTCCCATGAGAATG...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCCGGGAGTCACATTCTTaGTACCGAACCCATGTCTTA +
Preference number: 4 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLARESHS*YRTHVL
Trigger: TAAGACATGGGTTCGGTATCAAGAATGTGACTCCCG...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGGAGTCACATTCTTaGTACCGAACCCATGTCTTA +
Preference number: 4 (lower is better)
Translates to: APLGSAATRAVKASPGKGRESHS*YRTHVL
Trigger: TAAGACATGGGTTCGGTATCAAGAATGTGACTCCCG...ACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGTAGGGTGGTACGGTaGGAAGGAAGCTCAGGTGGA +
Preference number: 4 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGASRVVR*EGSSGG
Trigger: TCCACCTGAGCTTCCTTCGCACCGTACCACCCTACT...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTAAAATTCATGGTCCGTaGCAGCTTGATGAGCAGGTC +
Preference number: 4 (lower is better)
Translates to: APLGSAATRAVKASPGKGKIHGP*QLDEQV
Trigger: GACCTGCTCATCAAGCTGGCACGGACCATGAATTTT...ACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGCCTGTGTGCCAAACTTaGCATCTGCCACAAGGTGCA +
Preference number: 4 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWPVCQT*HLPQGA
Trigger: TGCACCTTGTGGCAGATGGCAAGTTTGGCACACAGG...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATTCCACTCCTTTTTGTTaGTGTTGTTTACCCGCTCCT +
Preference number: 4 (lower is better)
Translates to: APQWLGEGTRLDTGRASHSTPFC*CCLPAP
Trigger: AGGAGCGGGTAAACAACAGCAACAAAAAGGAGTGGA...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGTCCACTCCTTTTTGTTaGTGTTGTTTACCCGCTCCT +
Preference number: 4 (lower is better)
Translates to: QRAPLGSAATRAVKASPGSTPFC*CCLPAP
Trigger: AGGAGCGGGTAAACAACAGCAACAAAAAGGAGTGGA...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGATGTGCCGGTACATGGTaGTCAACTCCACCTGCCTCC +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARCAGTW*STPPAS
Trigger: GGAGGCAGGTGGAGTTGAGCACCATGTACCGGCACA...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCTGGATGGCCTCAGCTaGACTCTCATAATTGTGCTT +
Preference number: 4 (lower is better)
Translates to: APLGSAATRAVKASPGKGLDGLS*TLIIVL
Trigger: AAGCACAATTATGAGAGTGCAGCTGAGGCCATCCAG...ACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTCTGGATGGCCTCAGCTaGACTCTCATAATTGTGCTT +
Preference number: 4 (lower is better)
Translates to: ASLRPSRAAGLISVLGRALDGLS*TLIIVL
Trigger: AAGCACAATTATGAGAGTGCAGCTGAGGCCATCCAG...AGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGACAGGGACACATTTTaGTTCCAGGGGCTGTCCTTG +
Preference number: 4 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWDRDTF*FQGLSL
Trigger: CAAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTC...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGGGTGGCAGGGGCATTaGTGCGGGAGTCACATTCTT +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARGWQGH*CGSHIL
Trigger: AAGAATGTGACTCCCGCAGCAATGCCCCTGCCACCC...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCAGCATGAAGACCCCTaGCATGTTCTCAAAAGTGAG +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGQHEDP*HVLKSE
Trigger: CTCACTTTTGAGAACATGGCAGGGGTCTTCATGCTG...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGAAAGCCAGCTGCATCTaGTTCCTACGGGCATCCTTG +
Preference number: 4 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWKASCI*FLRASL
Trigger: CAAGGATGCCCGTAGGAAGCAGATGCAGCTGGCTTT...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGCCACTCTTTCTATCCTaGAGGTTCTTCCTCCACACG +
Preference number: 4 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWPLFLS*RFFLHT
Trigger: CGTGTGGAGGAAGAACCTGCAGGATAGAAAGAGTGG...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTTTTAGGGTCGGGCTCTaGTCTACCACTCTTTCTATC +
Preference number: 4 (lower is better)
Translates to: APLGSAATRAVKASPGKGFRVGL*STTLSI
Trigger: GATAGAAAGAGTGGTAGAGCAGAGCCCGACCCTAAA...ACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCATGGCGTTGGGCTTGTaGGTGACAGAAGTGGCGTTG +
Preference number: 4 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGAMALGL*VTEVAL
Trigger: CAACGCCACTTCTGTCACCCACAAGCCCAACGCCAT...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGGCACCTTCTCTGCCTTaGACTCACGCTCCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: DRREGSALLESGALDIWEAPSLP*THAPPA
Trigger: TGCTGGAGGAGCGTGAGTCCAAGGCAGAGAAGGTGC...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114312.2
ENSMUST00000114314.10
CDS-3UTR CCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCACATTCTTGGTTCCTaGGTCAAACTGCAGCACCTT +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGHILGS*VKLQHL
Trigger: AAGGTGCTGCAGTTTGACCCAGGAACCAAGAATGTG...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAACAGCGTCACTGATGTaGGCCGACTCGTTCTTGCCG +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARTASLM*ADSFLP
Trigger: CGGCAAGAACGAGTCGGCCCACATCAGTGACGCTGT...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTCTCCATCTGCATACTTaGAAGACATCAGCACCCTCT +
Preference number: 4 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRLHLHT*KTSAPS
Trigger: AGAGGGTGCTGATGTCTTCCAAGTATGCAGATGGAG...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCGATCTTCCTGTCATTTaGGATGACATGGGTACCATT +
Preference number: 4 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPDLPVI*DDMGTI
Trigger: AATGGTACCCATGTCATCCCAAATGACAGGAAGATC...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGCTATCTTTAGTCTGGTaGACATCTGGTATCCTCGAG +
Preference number: 4 (lower is better)
Translates to: QRAPLGSAATRAVKASPGLSLVW*TSGILE
Trigger: CTCGAGGATACCAGATGTCCACCAGACTAAAGATAG...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGTCACTATCTTTAGTCTaGTGGACATCTGGTATCCTC +
Preference number: 4 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRSLSLV*WTSGIL
Trigger: GAGGATACCAGATGTCCACCAGACTAAAGATAGTGA...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGGAAGGCTGCCAGGTTaGCAGTGTAGGAAGCCACGA +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARGRLPG*QCRKPR
Trigger: TCGTGGCTTCCTACACTGCCAACCTGGCAGCCTTCC...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGTCCCAGATGAAGGCATaGAGCTTGTTGTCCCGCACA +
Preference number: 4 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWSQMKA*SLLSRT
Trigger: TGTGCGGGACAACAAGCTCCATGCCTTCATCTGGGA...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCGTGATATCAGTGGGATaGTACTGCTGCAGGTTCTTC +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGVISVG*YCCRFF
Trigger: GAAGAACCTGCAGCAGTACCATCCCACTGATATCAC...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114312.2
ENSMUST00000114317.10
CDS-3UTR CCA 90 bp GCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTGTGATATCAGTGGGATaGTACTGCGTGTCTTTGGAG +
Preference number: 4 (lower is better)
Translates to: APLGSAATRAVKASPGKGVISVG*YCVSLE
Trigger: CTCCAAAGACACGCAGTACCATCCCACTGATATCAC...ACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGCACTCATTGTGGGCTTaGCATACACGAAGGGTTCTT +
Preference number: 4 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWHSLWA*HTRRVL
Trigger: AAGAACCCTTCGTGTATGTCAAGCCCACAATGAGTG...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAAAAGGGCTGCATGAATaGGTCCAGTGTGCTCCGAGG +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARKGLHE*VQCAPR
Trigger: CCTCGGAGCACACTGGACTCATTCATGCAGCCCTTT...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGATAGATGAACTTGTCTaGGGGGTTTCTGAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWIDELV*GVSEPG
Trigger: CCCAGGCTCAGAAACCCCTCAGACAAGTTCATCTAT...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCCAGCTGAGTCCCAGATaGAGGCATGGAGCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGAQLSPR*RHGACC
Trigger: ACAACAAGCTCCATGCCTTCATCTGGGACTCAGCTG...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CTGACCGAGGGATCTGAGAGGTTGAGCGGGCCCGTGATATCAGTGGGATGGTACCAGATCGCACTTCTGTaGAGCCTCAAACTCCAGCAC +
Preference number: 4 (lower is better)
Translates to: LTEGSERLSGPVISVGWYQIALL*SLKLQH
Trigger: GTGCTGGAGTTTGAGGCTTCACAGAAGTGCGATCTG...GTACCATCCCACTGATATCACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAACGGGAGTCACATTCTTaGTACCGAACCCATGTCTTA +
Preference number: 4 (lower is better)
Translates to: RAPLGSAATRAVKASPGKRESHS*YRTHVL
Trigger: TAAGACATGGGTTCGGTATCAAGAATGTGACTCCCG...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCACGGGAGTCACATTCTTaGTACCGAACCCATGTCTTA +
Preference number: 4 (lower is better)
Translates to: RPSRAAGLISVLGRANWARESHS*YRTHVL
Trigger: TAAGACATGGGTTCGGTATCAAGAATGTGACTCCCG...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAAGTAGGGTGGTACGGTaGGAAGGAAGCTCAGGTGGA +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARSRVVR*EGSSGG
Trigger: TCCACCTGAGCTTCCTTCGCACCGTACCACCCTACT...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGAGTAGGGTGGTACGGTaGGAAGGAAGCTCAGGTGGA +
Preference number: 4 (lower is better)
Translates to: DRREGSALLESGALDIWESRVVR*EGSSGG
Trigger: TCCACCTGAGCTTCCTTCGCACCGTACCACCCTACT...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAAGCGTCGTCCTCGCTTaGAGAAAGGATGATGACCCG +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARSVVLA*RKDDDP
Trigger: CGGGTCATCATCCTTTCTGCAAGCGAGGACGACGCT...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGGCCAGTCACTCCATCTaGATACTTGGAAGACATCAG +
Preference number: 4 (lower is better)
Translates to: SGLPEQQDSSVSLAGLTGASHSI*ILGRHQ
Trigger: CTGATGTCTTCCAAGTATGCAGATGGAGTGACTGGC...CCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCAAAAATTCATGGTCCGTaGCAGCTTGATGAGCAGGTC +
Preference number: 4 (lower is better)
Translates to: RPSRAAGLISVLGRANWAKIHGP*QLDEQV
Trigger: GACCTGCTCATCAAGCTGGCACGGACCATGAATTTT...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGAAAATTCATGGTCCGTaGCAGCTTGATGAGCAGGTC +
Preference number: 4 (lower is better)
Translates to: SGLPEQQDSSVSLAGLTGKIHGP*QLDEQV
Trigger: GACCTGCTCATCAAGCTGGCACGGACCATGAATTTT...CCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCGCCAAACTTGCCATCTaGCACAAGGTGCACCTCGTA +
Preference number: 4 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGAAKLAI*HKVHLV
Trigger: TACGAGGTGCACCTTGTGGCAGATGGCAAGTTTGGC...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTTCCACTCCTTTTTGTTaGTGTTGTTTACCCGCTCCT +
Preference number: 4 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRSTPFC*CCLPAP
Trigger: AGGAGCGGGTAAACAACAGCAACAAAAAGGAGTGGA...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CTGACCGAGGGATCTGAGAGGTTGAGCGGGCCCGTGATATCAGTGGGATGGTACAGCCACGATCATGTCTaGTTGACCACTGAGCAGCTC +
Preference number: 4 (lower is better)
Translates to: LTEGSERLSGPVISVGWYSHDHV*LTTEQL
Trigger: GAGCTGCTCAGTGGTCAAGCAGACATGATCGTGGCT...GTACCATCCCACTGATATCACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGCTGGATGGCCTCAGCTaGACTCTCATAATTGTGCTT +
Preference number: 4 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWLDGLS*TLIIVL
Trigger: AAGCACAATTATGAGAGTGCAGCTGAGGCCATCCAG...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp TCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCAGCATGAAGACCCCTaGCATGTTCTCAAAAGTGAG +
Preference number: 4 (lower is better)
Translates to: SGLPEQQDSSVSLAGLTGQHEDP*HVLKSE
Trigger: CTCACTTTTGAGAACATGGCAGGGGTCTTCATGCTG...CCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGCAGCATGAAGACCCCTaGCATGTTCTCAAAAGTGAG +
Preference number: 4 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWQHEDP*HVLKSE
Trigger: CTCACTTTTGAGAACATGGCAGGGGTCTTCATGCTG...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAAAGCCAGCTGCATCTaGTTCCTACGGGCATCCTTG +
Preference number: 4 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGAKASCI*FLRASL
Trigger: CAAGGATGCCCGTAGGAAGCAGATGCAGCTGGCTTT...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGACCACACGTTCACGGCTaGAAAAGCCAGCTGCATCTG +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARPHVHG*KSQLHL
Trigger: CAGATGCAGCTGGCTTTTGCAGCCGTGAACGTGTGG...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGATGGCGTTGGGCTTGTaGGTGACAGAAGTGGCGTTG +
Preference number: 4 (lower is better)
Translates to: DRREGSALLESGALDIWEMALGL*VTEVAL
Trigger: CAACGCCACTTCTGTCACCCACAAGCCCAACGCCAT...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAATGGCGTTGGGCTTGTaGGTGACAGAAGTGGCGTTG +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARMALGL*VTEVAL
Trigger: CAACGCCACTTCTGTCACCCACAAGCCCAACGCCAT...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGATCTCAAACCAGACGCTaGACTGGTGGGAGTAGGGTG +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARSQTRR*TGGSRV
Trigger: CACCCTACTCCCACCAGTCCAGCGTCTGGTTTGAGA...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAACACATTCTTGGTTCCTaGGTCAAACTGCAGCACCTT +
Preference number: 4 (lower is better)
Translates to: RAPLGSAATRAVKASPGKHILGS*VKLQHL
Trigger: AAGGTGCTGCAGTTTGACCCAGGAACCAAGAATGTG...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGACACGCAACCCCGCGGTaGATCAGTGATGTTCTCCTT +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARHATPR*ISDVLL
Trigger: AAGGAGAACATCACTGATCCACCGCGGGGTTGCGTG...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGACTGTCTTCCAGATGTTaGTGTTGCCCACGCAACCCC +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARLSSRC*CCPRNP
Trigger: GGGGTTGCGTGGGCAACACCAACATCTGGAAGACAG...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAACTCCATCTGCATACTTaGAAGACATCAGCACCCTCT +
Preference number: 4 (lower is better)
Translates to: RAPLGSAATRAVKASPGKLHLHT*KTSAPS
Trigger: AGAGGGTGCTGATGTCTTCCAAGTATGCAGATGGAG...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGGATCTTCCTGTCATTTaGGATGACATGGGTACCATT +
Preference number: 4 (lower is better)
Translates to: QRAPLGSAATRAVKASPGDLPVI*DDMGTI
Trigger: AATGGTACCCATGTCATCCCAAATGACAGGAAGATC...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGAGTCTGGTGGACATCTaGTATCCTCGAGGCTTCTCT +
Preference number: 4 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWSLVDI*YPRGFS
Trigger: AGAGAAGCCTCGAGGATACCAGATGTCCACCAGACT...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCTACACGAAGGGTTCTTaGTGGATTGTCACTATCTTT +
Preference number: 4 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGYTKGS*WIVTIF
Trigger: AAAGATAGTGACAATCCACCAAGAACCCTTCGTGTA...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTATTGTTAATGGTCAGTaGAGCCACGATCATGTCTGC +
Preference number: 4 (lower is better)
Translates to: ASLRPSRAAGLISVLGRAIVNGQ*SHDHVC
Trigger: GCAGACATGATCGTGGCTCCACTGACCATTAACAAT...AGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTATTGTTAATGGTCAGTaGAGCCACGATCATGTCTGC +
Preference number: 4 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRIVNGQ*SHDHVC
Trigger: GCAGACATGATCGTGGCTCCACTGACCATTAACAAT...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCATTGTTAATGGTCAGTaGAGCCACGATCATGTCTGC +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGIVNGQ*SHDHVC
Trigger: GCAGACATGATCGTGGCTCCACTGACCATTAACAAT...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGGAAGGCTGCCAGGTTaGCAGTGTAGGAAGCCACGA +
Preference number: 4 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGGRLPG*QCRKPR
Trigger: TCGTGGCTTCCTACACTGCCAACCTGGCAGCCTTCC...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AGGAAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAAGCACTGTGTCTTTTTaGTTTTGCAAAGCGCCGCGT +
Preference number: 4 (lower is better)
Translates to: RKDGAAISAPGSSDRGHLSTVSF*FCKAPR
Trigger: ACGCGGCGCTTTGCAAAACCAAAAAGACACAGTGCT...TAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGCACCTTCTCTGCCTTaGGTCCGCGCTTGTTGTCAT +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARAPSLP*VRACCH
Trigger: ATGACAACAAGCGCGGACCCAAGGCAGAGAAGGTGC...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGTTACAGTTGCATAGATaGACTTGTCTGAGGGGTTTC +
Preference number: 4 (lower is better)
Translates to: LALGKVGASPVNGVGRVVLQLHR*TCLRGF
Trigger: GAAACCCCTCAGACAAGTTCATCTATGCAACTGTAA...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGCATTCTCATGGGACTTaGGTATGGACAGGGACACAT +
Preference number: 4 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWHSHGT*VWTGTH
Trigger: ATGTGTCCCTGTCCATACTCAAGTCCCATGAGAATG...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCACCTGTGTGCCAAACTTaGCATCTGCCACAAGGTGCA +
Preference number: 4 (lower is better)
Translates to: RREGSALLESGALDIWEPPVCQT*HLPQGA
Trigger: TGCACCTTGTGGCAGATGGCAAGTTTGGCACACAGG...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGATTACCCGCTCCTGTGTaGCAAACTTGCCATCTGCCA +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARLPAPV*QTCHLP
Trigger: TGGCAGATGGCAAGTTTGGCACACAGGAGCGGGTAA...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCATTACCCGCTCCTGTGTaGCAAACTTGCCATCTGCCA +
Preference number: 4 (lower is better)
Translates to: RREGSALLESGALDIWEPLPAPV*QTCHLP
Trigger: TGGCAGATGGCAAGTTTGGCACACAGGAGCGGGTAA...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGAGCCACGATCATGTCTaGTTGACCACTGAGCAGCTC +
Preference number: 4 (lower is better)
Translates to: DRREGSALLESGALDIWESHDHV*LTTEQL
Trigger: GAGCTGCTCAGTGGTCAAGCAGACATGATCGTGGCT...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAAGCCACGATCATGTCTaGTTGACCACTGAGCAGCTC +
Preference number: 4 (lower is better)
Translates to: RREGSALLESGALDIWEPSHDHV*LTTEQL
Trigger: GAGCTGCTCAGTGGTCAAGCAGACATGATCGTGGCT...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGCAGCATGAAGACCCCTaGCATGTTCTCAAAAGTGAG +
Preference number: 4 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWQHEDP*HVLKSE
Trigger: CTCACTTTTGAGAACATGGCAGGGGTCTTCATGCTG...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGAAAGCCAGCTGCATCTaGTTCCTACGGGCATCCTTG +
Preference number: 4 (lower is better)
Translates to: DRREGSALLESGALDIWEKASCI*FLRASL
Trigger: CAAGGATGCCCGTAGGAAGCAGATGCAGCTGGCTTT...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCCCACTCTTTCTATCCTaGAGGTTCTTCCTCCACACG +
Preference number: 4 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGAPLFLS*RFFLHT
Trigger: CGTGTGGAGGAAGAACCTGCAGGATAGAAAGAGTGG...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGATGTCGCTTATTGGCCTaGTTTACTGCCTCGCGGAAC +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARCRLLA*FTASRN
Trigger: GTTCCGCGAGGCAGTAAACCAGGCCAATAAGCGACA...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTGATCTTCCTGTCATTTaGGATGACATGGGTACCATT +
Preference number: 4 (lower is better)
Translates to: APLGSAATRAVKASPGKGDLPVI*DDMGTI
Trigger: AATGGTACCCATGTCATCCCAAATGACAGGAAGATC...ACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGGATCTTCCTGTCATTTaGGATGACATGGGTACCATT +
Preference number: 4 (lower is better)
Translates to: LALGKVGASPVNGVGRVVDLPVI*DDMGTI
Trigger: AATGGTACCCATGTCATCCCAAATGACAGGAAGATC...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGCTATCTTTAGTCTGGTaGACATCTGGTATCCTCGAG +
Preference number: 4 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWLSLVW*TSGILE
Trigger: CTCGAGGATACCAGATGTCCACCAGACTAAAGATAG...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCTCACTATCTTTAGTCTaGTGGACATCTGGTATCCTC +
Preference number: 4 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGSLSLV*WTSGIL
Trigger: GAGGATACCAGATGTCCACCAGACTAAAGATAGTGA...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCTCACTATCTTTAGTCTaGTGGACATCTGGTATCCTC +
Preference number: 4 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLASLSLV*WTSGIL
Trigger: GAGGATACCAGATGTCCACCAGACTAAAGATAGTGA...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGTACACGAAGGGTTCTTaGTGGATTGTCACTATCTTT +
Preference number: 4 (lower is better)
Translates to: QRAPLGSAATRAVKASPGYTKGS*WIVTIF
Trigger: AAAGATAGTGACAATCCACCAAGAACCCTTCGTGTA...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGATTGTTAATGGTCAGTaGAGCCACGATCATGTCTGC +
Preference number: 4 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWIVNGQ*SHDHVC
Trigger: GCAGACATGATCGTGGCTCCACTGACCATTAACAAT...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCAATTGTTAATGGTCAGTaGAGCCACGATCATGTCTGC +
Preference number: 4 (lower is better)
Translates to: RPSRAAGLISVLGRANWAIVNGQ*SHDHVC
Trigger: GCAGACATGATCGTGGCTCCACTGACCATTAACAAT...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCATTGCCGTTGATTAGCTaGAGTCCGATGATGCCGTCA +
Preference number: 4 (lower is better)
Translates to: RREGSALLESGALDIWEPLPLIS*SPMMPS
Trigger: TGACGGCATCATCGGACTTCAGCTAATCAACGGCAA...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp TCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGGGTTCTGCAGGTTCATaGTACTATAGTTGGCAAACT +
Preference number: 4 (lower is better)
Translates to: SGLPEQQDSSVSLAGLTGGSAGS*YYSWQT
Trigger: AGTTTGCCAACTATAGTATCATGAACCTGCAGAACC...CCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp GTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTTCTGCAGGTTCATaGTACTATAGTTGGCAAACT +
Preference number: 4 (lower is better)
Translates to: VKASPGKGRSQPSEWGGKGSAGS*YYSWQT
Trigger: AGTTTGCCAACTATAGTATCATGAACCTGCAGAACC...CTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGACTCCTCCTGGCCAGATaGTCTTCCTGTCATTTGGGA +
Preference number: 4 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGLLLAR*SSCHLG
Trigger: TCCCAAATGACAGGAAGATCATCTGGCCAGGAGGAG...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGATCAGGCCCTGGTACTTaGAGGGCTTGGAGAACTCTA +
Preference number: 4 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGSGPGT*RAWRTL
Trigger: TAGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGA...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp TGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGAAAGGGCTGCATGAATaGGTCCAGTGTGCTCCGAGG +
Preference number: 4 (lower is better)
Translates to: CCKIEIHRQGGPLAPTSGKGLHE*VQCAPR
Trigger: CCTCGGAGCACACTGGACTCATTCATGCAGCCCTTT...CCCCGACGTCGGAGCTAACGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAATAGATGAACTTGTCTaGGGGGTTTCTGAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARIDELV*GVSEPG
Trigger: CCCAGGCTCAGAAACCCCTCAGACAAGTTCATCTAT...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCCAGCATGAAGACCCCTaGCATGTTCTCAAAAGTGAG +
Preference number: 4 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGAQHEDP*HVLKSE
Trigger: CTCACTTTTGAGAACATGGCAGGGGTCTTCATGCTG...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAAAAGCCAGCTGCATCTaGTTCCTACGGGCATCCTTG +
Preference number: 4 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGKASCI*FLRASL
Trigger: CAAGGATGCCCGTAGGAAGCAGATGCAGCTGGCTTT...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCTTTAGGGTCGGGCTCTaGTCTACCACTCTTTCTATC +
Preference number: 4 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGAFRVGL*STTLSI
Trigger: GATAGAAAGAGTGGTAGAGCAGAGCCCGACCCTAAA...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGGATCTTCCTGTCATTTaGGATGACATGGGTACCATT +
Preference number: 4 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWDLPVI*DDMGTI
Trigger: AATGGTACCCATGTCATCCCAAATGACAGGAAGATC...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGATCTTCCTGTCATTTaGGATGACATGGGTACCATT +
Preference number: 4 (lower is better)
Translates to: VKASPGKGRSQPSEWGGKDLPVI*DDMGTI
Trigger: AATGGTACCCATGTCATCCCAAATGACAGGAAGATC...CTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGCTATCTTTAGTCTGGTaGACATCTGGTATCCTCGAG +
Preference number: 4 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWLSLVW*TSGILE
Trigger: CTCGAGGATACCAGATGTCCACCAGACTAAAGATAG...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCATCACTATCTTTAGTCTaGTGGACATCTGGTATCCTC +
Preference number: 4 (lower is better)
Translates to: RPSRAAGLISVLGRANWASLSLV*WTSGIL
Trigger: GAGGATACCAGATGTCCACCAGACTAAAGATAGTGA...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp TCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGTCACTATCTTTAGTCTaGTGGACATCTGGTATCCTC +
Preference number: 4 (lower is better)
Translates to: SGLPEQQDSSVSLAGLTGSLSLV*WTSGIL
Trigger: GAGGATACCAGATGTCCACCAGACTAAAGATAGTGA...CCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AGGAAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTATCACTATCTTTAGTCTaGTGGACATCTGGTATCCTC +
Preference number: 4 (lower is better)
Translates to: RKDGAAISAPGSSDRGHLSLSLV*WTSGIL
Trigger: GAGGATACCAGATGTCCACCAGACTAAAGATAGTGA...TAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTTACACGAAGGGTTCTTaGTGGATTGTCACTATCTTT +
Preference number: 4 (lower is better)
Translates to: ASLRPSRAAGLISVLGRAYTKGS*WIVTIF
Trigger: AAAGATAGTGACAATCCACCAAGAACCCTTCGTGTA...AGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTTACACGAAGGGTTCTTaGTGGATTGTCACTATCTTT +
Preference number: 4 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRYTKGS*WIVTIF
Trigger: AAAGATAGTGACAATCCACCAAGAACCCTTCGTGTA...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGATCCCAGATGAAGGCATaGAGCTTGTTGTCCCGCACA +
Preference number: 4 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGSQMKA*SLLSRT
Trigger: TGTGCGGGACAACAAGCTCCATGCCTTCATCTGGGA...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp TGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGCTCCTCCTGGCCAGATaGTCTTCCTGTCATTTGGGA +
Preference number: 4 (lower is better)
Translates to: CCKIEIHRQGGPLAPTSGLLLAR*SSCHLG
Trigger: TCCCAAATGACAGGAAGATCATCTGGCCAGGAGGAG...CCCCGACGTCGGAGCTAACGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGACTGGATGGCCTCAGCTaGACTCTCATAATTGTGCTT +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARLDGLS*TLIIVL
Trigger: AAGCACAATTATGAGAGTGCAGCTGAGGCCATCCAG...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR GCA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCATTTAGGGTCGGGCTCTaGTCTACCACTCTTTCTATC +
Preference number: 4 (lower is better)
Translates to: RREGSALLESGALDIWEPFRVGL*STTLSI
Trigger: GATAGAAAGAGTGGTAGAGCAGAGCCCGACCCTAAA...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCACATTCTTGGTTCCTaGGTCAAACTGCAGCACCTT +
Preference number: 4 (lower is better)
Translates to: DRREGSALLESGALDIWEHILGS*VKLQHL
Trigger: AAGGTGCTGCAGTTTGACCCAGGAACCAAGAATGTG...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp TGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGTTGCCGTTGATTAGCTaGAGTCCGATGATGCCGTCA +
Preference number: 4 (lower is better)
Translates to: CCKIEIHRQGGPLAPTSGLPLIS*SPMMPS
Trigger: TGACGGCATCATCGGACTTCAGCTAATCAACGGCAA...CCCCGACGTCGGAGCTAACGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp CTGACCGAGGGATCTGAGAGGTTGAGCGGGCCCGTGATATCAGTGGGATGGTACTTACAGTTGCATAGATaGACTTGTCTGAGGGGTTTC +
Preference number: 4 (lower is better)
Translates to: LTEGSERLSGPVISVGWYLQLHR*TCLRGF
Trigger: GAAACCCCTCAGACAAGTTCATCTATGCAACTGTAA...GTACCATCCCACTGATATCACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp ATATCAGTGGGATGGTACTGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGCGGAACATCTGCTCGTaGTTGCGCGTGCTCAGCACC +
Preference number: 4 (lower is better)
Translates to: ISVGWYCCKIEIHRQGGPRNICS*LRVLST
Trigger: GGTGCTGAGCACGCGCAAGCACGAGCAGATGTTCCG...CGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCAGTACCATCCCACTGATAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGTCACTCCATCTaGATACTTGGAAGACATCAG +
Preference number: 4 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGASHSI*ILGRHQ
Trigger: CTGATGTCTTCCAAGTATGCAGATGGAGTGACTGGC...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCGATCTTCCTGTCATTTaGGATGACATGGGTACCATT +
Preference number: 4 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGADLPVI*DDMGTI
Trigger: AATGGTACCCATGTCATCCCAAATGACAGGAAGATC...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp TGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGCACTCATTGTGGGCTTaGCATACACGAAGGGTTCTT +
Preference number: 4 (lower is better)
Translates to: CCKIEIHRQGGPLAPTSGHSLWA*HTRRVL
Trigger: AAGAACCCTTCGTGTATGTCAAGCCCACAATGAGTG...CCCCGACGTCGGAGCTAACGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR TCA 90 bp TGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGCGGGAGTCACATTCTTaGTACCGAACCCATGTCTTA +
Preference number: 4 (lower is better)
Translates to: CCKIEIHRQGGPLAPTSGRESHS*YRTHVL
Trigger: TAAGACATGGGTTCGGTATCAAGAATGTGACTCCCG...CCCCGACGTCGGAGCTAACGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp ATATCAGTGGGATGGTACTGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGTGTGCCGGTACATGGTaGTCAACTCCACCTGCCTCC +
Preference number: 4 (lower is better)
Translates to: ISVGWYCCKIEIHRQGGPCAGTW*STPPAS
Trigger: GGAGGCAGGTGGAGTTGAGCACCATGTACCGGCACA...CGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCAGTACCATCCCACTGATAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR GCA 90 bp TGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGCTGGATGGCCTCAGCTaGACTCTCATAATTGTGCTT +
Preference number: 4 (lower is better)
Translates to: CCKIEIHRQGGPLAPTSGLDGLS*TLIIVL
Trigger: AAGCACAATTATGAGAGTGCAGCTGAGGCCATCCAG...CCCCGACGTCGGAGCTAACGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAATTGTTAATGGTCAGTaGAGCCACGATCATGTCTGC +
Preference number: 4 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGIVNGQ*SHDHVC
Trigger: GCAGACATGATCGTGGCTCCACTGACCATTAACAAT...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR TCA 90 bp ATATCAGTGGGATGGTACTGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGGGTCCCCATCCTCATTaGATTCCACACGGCCAGTCA +
Preference number: 4 (lower is better)
Translates to: ISVGWYCCKIEIHRQGGPGPHPH*IPHGQS
Trigger: TGACTGGCCGTGTGGAATTCAATGAGGATGGGGACC...CGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCAGTACCATCCCACTGATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp ATATCAGTGGGATGGTACTGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGCTGTCTTCCAGATGTTaGTGTTGCCCACGCAACCCC +
Preference number: 4 (lower is better)
Translates to: ISVGWYCCKIEIHRQGGPLSSRC*CCPRNP
Trigger: GGGGTTGCGTGGGCAACACCAACATCTGGAAGACAG...CGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCAGTACCATCCCACTGATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGATACACGAAGGGTTCTTaGTGGATTGTCACTATCTTT +
Preference number: 4 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARYTKGS*WIVTIF
Trigger: AAAGATAGTGACAATCCACCAAGAACCCTTCGTGTA...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CCA 90 bp ATATCAGTGGGATGGTACTGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGTGTCGCTTATTGGCCTaGTTTACTGCCTCGCGGAAC +
Preference number: 4 (lower is better)
Translates to: ISVGWYCCKIEIHRQGGPCRLLA*FTASRN
Trigger: GTTCCGCGAGGCAGTAAACCAGGCCAATAAGCGACA...CGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCAGTACCATCCCACTGATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CCA 90 bp ATATCAGTGGGATGGTACTGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGGATCTTCCTGTCATTTaGGATGACATGGGTACCATT +
Preference number: 4 (lower is better)
Translates to: ISVGWYCCKIEIHRQGGPDLPVI*DDMGTI
Trigger: AATGGTACCCATGTCATCCCAAATGACAGGAAGATC...CGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCAGTACCATCCCACTGATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp AGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGGGTGGTCCCCAATGCCAGAGTaGAGCAGGACGCCCCAGGAA +
Preference number: 5 (lower is better)
Translates to: RRPVSSDVGGTRGAGTGWSPMPE*SRTPQE
Trigger: TTCCTGGGGCGTCCTGCTCAACTCTGGCATTGGGGA...CCACCCTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCAACATCTGCTCGTGCTaGCGCGTGCTCAGCACCGCG +
Preference number: 5 (lower is better)
Translates to: VVMRARCPWGRGAARCCANICSC*RVLSTA
Trigger: CGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGTT...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGGGTGGCCTGTCTTCCAGATGTaGGTGTTGCCCACGCAACCC +
Preference number: 5 (lower is better)
Translates to: RRPVSSDVGGTRGAGTGWPVFQM*VLPTQP
Trigger: GGGTTGCGTGGGCAACACCAACATCTGGAAGACAGG...CCACCCTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp CGACCCCGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCTTCCAGGGGCTGTCCTaGCGCATGCCGATGCCAAAG +
Preference number: 5 (lower is better)
Translates to: RPRRAPGLCVGQAAVPCVFQGLS*RMPMPK
Trigger: CTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGAA...GACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACGGGGTCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp GTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGAGCACCGCGCCGATGTaGACAATCTTGGGGTCGCAG +
Preference number: 5 (lower is better)
Translates to: VLQGLPARQQSRRTGGPGSTAPM*TILGSQ
Trigger: CTGCGACCCCAAGATTGTCAACATCGGCGCGGTGCT...CCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGAC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCAGCACCTTCTCTGCCTaGGACTCACGCTCCTCCAGC +
Preference number: 5 (lower is better)
Translates to: VVMRARCPWGRGAARCCASTFSA*DSRSSS
Trigger: GCTGGAGGAGCGTGAGTCCAAGGCAGAGAAGGTGCT...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114312.2
ENSMUST00000114314.10
CDS-3UTR CAA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCTTCCAGATGTTGGTGTaGCCCACGCAACCCCGCGGT +
Preference number: 5 (lower is better)
Translates to: VVMRARCPWGRGAARCCAFQMLV*PTQPRG
Trigger: ACCGCGGGGTTGCGTGGGCAACACCAACATCTGGAA...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGCGGGGGAGGGGCAGAGGAGGTTCCAGATGTTGGTGTaGCCCACGCAACCCCGCGGT +
Preference number: 5 (lower is better)
Translates to: RGPGRCPVRLSAGEGQRRFQMLV*PTQPRG
Trigger: ACCGCGGGGTTGCGTGGGCAACACCAACATCTGGAA...CCTCCTCTGCCCCTCCCCCGCAGACAGACGCACGGGACAGCGGCCTGGCCCACG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCCCTGTCTTCCAGATGTaGGTGTTGCCCACGCAACCC +
Preference number: 5 (lower is better)
Translates to: GYARPVSLGQRGSALLRPPVFQM*VLPTQP
Trigger: GGGTTGCGTGGGCAACACCAACATCTGGAAGACAGG...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
70% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCATGGTCCGTGCCAGCTaGATGAGCAGGTCAACGCAG +
Preference number: 5 (lower is better)
Translates to: GYARPVSLGQRGSALLRPMVRAS*MSRSTQ
Trigger: CTGCGTTGACCTGCTCATCAAGCTGGCACGGACCAT...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGGAGGACCTACGTCTCTaGAAGCTGGAGGCCAGGGTG +
Preference number: 5 (lower is better)
Translates to: RQGGPLAPTSGARAGPGQEDLRL*KLEARV
Trigger: CACCCTGGCCTCCAGCTTCAAGAGACGTAGGTCCTC...CTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCTTGTCT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp GTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGGAGGACCTACGTCTCTaGAAGCTGGAGGCCAGGGTG +
Preference number: 5 (lower is better)
Translates to: VLQGLPARQQSRRTGGPGEDLRL*KLEARV
Trigger: CACCCTGGCCTCCAGCTTCAAGAGACGTAGGTCCTC...CCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGAC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCGCCATCTGTATGGCGTaGGGCTTGTGGGTGACAGAA +
Preference number: 5 (lower is better)
Translates to: GYARPVSLGQRGSALLRPAICMA*GLWVTE
Trigger: TTCTGTCACCCACAAGCCCAACGCCATACAGATGGC...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGAAGGCATGGAGCTTGTaGTCCCGCACAGCCTGGATG +
Preference number: 5 (lower is better)
Translates to: RQGGPLAPTSGARAGPGQKAWSL*SRTAWM
Trigger: CATCCAGGCTGTGCGGGACAACAAGCTCCATGCCTT...CTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCTTGTCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp CGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGTTCCAGGGGCTGTCCTaGCGCATGCCGATGCCAAAG +
Preference number: 5 (lower is better)
Translates to: RRAPGLCVGQAAVPCVCLFQGLS*RMPMPK
Trigger: CTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGAA...CAGACAGACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCGAGGGATCTGAGAGGTaGAGCGGGCCCGTGATATCA +
Preference number: 5 (lower is better)
Translates to: VVMRARCPWGRGAARCCAEGSER*SGPVIS
Trigger: TGATATCACGGGCCCGCTCAACCTCTCAGATCCCTC...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCTGTATGGCGTTGGGCTaGTGGGTGACAGAAGTGGCG +
Preference number: 5 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPCMALG*WVTEVA
Trigger: CGCCACTTCTGTCACCCACAAGCCCAACGCCATACA...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCTACTGCGCACGCTCATaGTTAATGGTCAGTGGAGCC +
Preference number: 5 (lower is better)
Translates to: GYARPVSLGQRGSALLRPYCARS*LMVSGA
Trigger: GGCTCCACTGACCATTAACAATGAGCGTGCGCAGTA...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCGTCAGGCCCTGGTACTaGAAGGGCTTGGAGAACTCT +
Preference number: 5 (lower is better)
Translates to: VVMRARCPWGRGAARCCAVRPWY*KGLENS
Trigger: AGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGAC...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCCTGAGCCTGGGGTCATaGATGCCTGTGATGCGCTCC +
Preference number: 5 (lower is better)
Translates to: RCCAPVARGRHALGHWESLSLGS*MPVMRS
Trigger: GGAGCGCATCACAGGCATCAATGACCCCAGGCTCAG...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAAGGCATGGAGCTTGTaGTCCCGCACAGCCTGGATG +
Preference number: 5 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPKAWSL*SRTAWM
Trigger: CATCCAGGCTGTGCGGGACAACAAGCTCCATGCCTT...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCGGACAGGGACACATTTaGCTTCCAGGGGCTGTCCTT +
Preference number: 5 (lower is better)
Translates to: VVMRARCPWGRGAARCCAGQGHI*LPGAVL
Trigger: AAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTCC...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CGACCCCGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTGTCTTTTTGGTTTaGCAAAGCGCCGCGTCCACC +
Preference number: 5 (lower is better)
Translates to: RPRRAPGLCVGQAAVPCVCVFLV*QSAAST
Trigger: GGTGGACGCGGCGCTTTGCAAAACCAAAAAGACACA...GACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACGGGGTCG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCAACATCTGCTCGTGCTaGCGCGTGCTCAGCACCGCG +
Preference number: 5 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGNICSC*RVLSTA
Trigger: CGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGTT...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTGTATGGCGTTGGGCTaGTGGGTGACAGAAGTGGCG +
Preference number: 5 (lower is better)
Translates to: RCCAPVARGRHALGHWESCMALG*WVTEVA
Trigger: CGCCACTTCTGTCACCCACAAGCCCAACGCCATACA...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGGCCATCTGTATGGCGTaGGGCTTGTGGGTGACAGAA +
Preference number: 5 (lower is better)
Translates to: RRAPGLCVGQAAVPCVCLAICMA*GLWVTE
Trigger: TTCTGTCACCCACAAGCCCAACGCCATACAGATGGC...CAGACAGACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCACTCCATCTGCATACTaGGAAGACATCAGCACCCTC +
Preference number: 5 (lower is better)
Translates to: GYARPVSLGQRGSALLRPTPSAY*EDISTL
Trigger: GAGGGTGCTGATGTCTTCCAAGTATGCAGATGGAGT...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCCCCACTTGCACCAGCTaGCGGTTCTGCAGGTTCATG +
Preference number: 5 (lower is better)
Translates to: RCCAPVARGRHALGHWESPTCTS*RFCRFM
Trigger: CATGAACCTGCAGAACCGCAAGCTGGTGCAAGTGGG...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCATTGTAGATGCCCACTaGCACCAGCTTGCGGTTCTG +
Preference number: 5 (lower is better)
Translates to: VVMRARCPWGRGAARCCAIVDAH*HQLAVL
Trigger: CAGAACCGCAAGCTGGTGCAAGTGGGCATCTACAAT...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCTACTGCGCACGCTCATaGTTAATGGTCAGTGGAGCC +
Preference number: 5 (lower is better)
Translates to: VVMRARCPWGRGAARCCAYCARS*LMVSGA
Trigger: GGCTCCACTGACCATTAACAATGAGCGTGCGCAGTA...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp TCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTGGACAGGGACACATTTaGCTTCCAGGGGCTGTCCTT +
Preference number: 5 (lower is better)
Translates to: SCRGCPPGSRAGGREAQGGQGHI*LPGAVL
Trigger: AAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTCC...ACCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCCCGCGGGAGTCACATTCTaGATACCGAACCCATGTCTT +
Preference number: 5 (lower is better)
Translates to: GYARPVSLGQRGSALLRPAGVTF*IPNPCL
Trigger: AAGACATGGGTTCGGTATCAAGAATGTGACTCCCGC...GGGGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGCGGGGGAGGGGCAGAGGAGGTGTGTCTTTTTGGTTTaGCAAAGCGCCGCGTCCACC +
Preference number: 5 (lower is better)
Translates to: RGPGRCPVRLSAGEGQRRCVFLV*QSAAST
Trigger: GGTGGACGCGGCGCTTTGCAAAACCAAAAAGACACA...CCTCCTCTGCCCCTCCCCCGCAGACAGACGCACGGGACAGCGGCCTGGCCCACG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCTGGTACTGCGTGTCTTaGGAGGACCTACGTCTCTTG +
Preference number: 5 (lower is better)
Translates to: VVMRARCPWGRGAARCCAWYCVS*EDLRLL
Trigger: CAAGAGACGTAGGTCCTCCAAAGACACGCAGTACCA...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATAACATCTGCTCGTGCTaGCGCGTGCTCAGCACCGCG +
Preference number: 5 (lower is better)
Translates to: APQWLGEGTRLDTGRASHNICSC*RVLSTA
Trigger: CGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGTT...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCAGCACCTTCTCTGCCTaGGACTCACGCTCCTCCAGC +
Preference number: 5 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGSTFSA*DSRSSS
Trigger: GCTGGAGGAGCGTGAGTCCAAGGCAGAGAAGGTGCT...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114312.2
ENSMUST00000114314.10
CDS-3UTR CAA 90 bp AGGCGGCCCGTTAGCTCCGACGTCGGGGGCACGCGCGGGGCCGGGACAGGGTGGAGGGTTCTTGGTGGATaGTCACTATCTTTAGTCTGG +
Preference number: 5 (lower is better)
Translates to: RRPVSSDVGGTRGAGTGWRVLGG*SLSLVW
Trigger: CCAGACTAAAGATAGTGACAATCCACCAAGAACCCT...CCACCCTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp GTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGCCGTTCCACTCCTTTTaGTTGCTGTTGTTTACCCGC +
Preference number: 5 (lower is better)
Translates to: VLQGLPARQQSRRTGGPGPFHSF*LLLFTR
Trigger: GCGGGTAAACAACAGCAACAAAAAGGAGTGGAACGG...CCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCGTCAGGCCCTGGTACTaGAAGGGCTTGGAGAACTCT +
Preference number: 5 (lower is better)
Translates to: RCCAPVARGRHALGHWESVRPWY*KGLENS
Trigger: AGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGAC...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCTCCCCAATGCCAGAGTaGAGCAGGACGCCCCAGGAA +
Preference number: 5 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSSPMPE*SRTPQE
Trigger: TTCCTGGGGCGTCCTGCTCAACTCTGGCATTGGGGA...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCTCCCCAATGCCAGAGTaGAGCAGGACGCCCCAGGAA +
Preference number: 5 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPSPMPE*SRTPQE
Trigger: TTCCTGGGGCGTCCTGCTCAACTCTGGCATTGGGGA...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGCTGAGCCTGGGGTCATaGATGCCTGTGATGCGCTCC +
Preference number: 5 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQLSLGS*MPVMRS
Trigger: GGAGCGCATCACAGGCATCAATGACCCCAGGCTCAG...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGCTGAGCCTGGGGTCATaGATGCCTGTGATGCGCTCC +
Preference number: 5 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRLSLGS*MPVMRS
Trigger: GGAGCGCATCACAGGCATCAATGACCCCAGGCTCAG...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCCTGAGCCTGGGGTCATaGATGCCTGTGATGCGCTCC +
Preference number: 5 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPLSLGS*MPVMRS
Trigger: GGAGCGCATCACAGGCATCAATGACCCCAGGCTCAG...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCACTGAGCCTGGGGTCATaGATGCCTGTGATGCGCTCC +
Preference number: 5 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPLSLGS*MPVMRS
Trigger: GGAGCGCATCACAGGCATCAATGACCCCAGGCTCAG...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCCTGAGCCTGGGGTCATaGATGCCTGTGATGCGCTCC +
Preference number: 5 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGLSLGS*MPVMRS
Trigger: GGAGCGCATCACAGGCATCAATGACCCCAGGCTCAG...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCTTCCAGGGGCTGTCCTaGCGCATGCCGATGCCAAAG +
Preference number: 5 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPFQGLS*RMPMPK
Trigger: CTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGAA...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCTTCCAGGGGCTGTCCTaGCGCATGCCGATGCCAAAG +
Preference number: 5 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGFQGLS*RMPMPK
Trigger: CTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGAA...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGCGGGGGAGGGGCAGAGGAGGGGCGGGAGTCACATTCTaGATACCGAACCCATGTCTT +
Preference number: 5 (lower is better)
Translates to: VGQAAVPCVCLRGRGRGGAGVTF*IPNPCL
Trigger: AAGACATGGGTTCGGTATCAAGAATGTGACTCCCGC...CCCTCCTCTGCCCCTCCCCCGCAGACAGACGCACGGGACAGCGGCCTGGCCCAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCGCGGGAGTCACATTCTaGATACCGAACCCATGTCTT +
Preference number: 5 (lower is better)
Translates to: VVMRARCPWGRGAARCCAAGVTF*IPNPCL
Trigger: AAGACATGGGTTCGGTATCAAGAATGTGACTCCCGC...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCGAGGACCTACGTCTCTaGAAGCTGGAGGCCAGGGTG +
Preference number: 5 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGEDLRL*KLEARV
Trigger: CACCCTGGCCTCCAGCTTCAAGAGACGTAGGTCCTC...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS TCA 90 bp GGAACATCTGCTCGTGCTTGCGCGTGCTCAGCACCGCGCCGATGTTaGCAATCTTGGGGTCGCAGGCAGCGCGGGCGAAGGAGCAGGAGA +
Preference number: 5 (lower is better)
Translates to: GTSARACACSAPRRC*QSWGRRQRGRRSRR
Trigger: TCTCCTGCTCCTTCGCCCGCGCTGCCTGCGACCCCAAGATTGTCAACATCGGCGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGTTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCAACATCTGCTCGTGCTaGCGCGTGCTCAGCACCGCG +
Preference number: 5 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGNICSC*RVLSTA
Trigger: CGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGTT...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCTGTATGGCGTTGGGCTaGTGGGTGACAGAAGTGGCG +
Preference number: 5 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSCMALG*WVTEVA
Trigger: CGCCACTTCTGTCACCCACAAGCCCAACGCCATACA...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCATGTATGGCGTTGGGCTaGTGGGTGACAGAAGTGGCG +
Preference number: 5 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPCMALG*WVTEVA
Trigger: CGCCACTTCTGTCACCCACAAGCCCAACGCCATACA...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATTTCCAGATGTTGGTGTaGCCCACGCAACCCCGCGGT +
Preference number: 5 (lower is better)
Translates to: APQWLGEGTRLDTGRASHFQMLV*PTQPRG
Trigger: ACCGCGGGGTTGCGTGGGCAACACCAACATCTGGAA...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCCCTGTCTTCCAGATGTaGGTGTTGCCCACGCAACCC +
Preference number: 5 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPPVFQM*VLPTQP
Trigger: GGGTTGCGTGGGCAACACCAACATCTGGAAGACAGG...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
64% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCCTGTCTTCCAGATGTaGGTGTTGCCCACGCAACCC +
Preference number: 5 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSPVFQM*VLPTQP
Trigger: GGGTTGCGTGGGCAACACCAACATCTGGAAGACAGG...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCACCTGTCTTCCAGATGTaGGTGTTGCCCACGCAACCC +
Preference number: 5 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPPVFQM*VLPTQP
Trigger: GGGTTGCGTGGGCAACACCAACATCTGGAAGACAGG...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCCCCACTTGCACCAGCTaGCGGTTCTGCAGGTTCATG +
Preference number: 5 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGPTCTS*RFCRFM
Trigger: CATGAACCTGCAGAACCGCAAGCTGGTGCAAGTGGG...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCCCCACTTGCACCAGCTaGCGGTTCTGCAGGTTCATG +
Preference number: 5 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPPTCTS*RFCRFM
Trigger: CATGAACCTGCAGAACCGCAAGCTGGTGCAAGTGGG...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
64% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCCCACTTGCACCAGCTaGCGGTTCTGCAGGTTCATG +
Preference number: 5 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSPTCTS*RFCRFM
Trigger: CATGAACCTGCAGAACCGCAAGCTGGTGCAAGTGGG...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCTCACTCATTGTGGGCTaGACATACACGAAGGGTTCT +
Preference number: 5 (lower is better)
Translates to: VVMRARCPWGRGAARCCASLIVG*TYTKGS
Trigger: AGAACCCTTCGTGTATGTCAAGCCCACAATGAGTGA...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGCGGGGGAGGGGCAGAGGAGGTTGACAGGGTCACCATaGACTGTGAACTCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: RGPGRCPVRLSAGEGQRRLTGSP*TVNSSL
Trigger: CAAAGAGGAGTTCACAGTCAATGGTGACCCTGTCAA...CCTCCTCTGCCCCTCCCCCGCAGACAGACGCACGGGACAGCGGCCTGGCCCACG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCGTACAGATCACCTTCTaGACAGGGTCACCATTGACT +
Preference number: 5 (lower is better)
Translates to: VVMRARCPWGRGAARCCAVQITF*TGSPLT
Trigger: AGTCAATGGTGACCCTGTCAAGAAGGTGATCTGTAC...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGAAGGCATGGAGCTTGTaGTCCCGCACAGCCTGGATG +
Preference number: 5 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRKAWSL*SRTAWM
Trigger: CATCCAGGCTGTGCGGGACAACAAGCTCCATGCCTT...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CGTCGTGCTCCGGGGCTCTGCGTGGGCCAGGCCGCTGTCCCGTGCGTCTGTCTGGCGGGAGTCACATTCTaGATACCGAACCCATGTCTT +
Preference number: 5 (lower is better)
Translates to: RRAPGLCVGQAAVPCVCLAGVTF*IPNPCL
Trigger: AAGACATGGGTTCGGTATCAAGAATGTGACTCCCGC...CAGACAGACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCCCGGTGCTCGTGTCTTaGGAGGACCTACGTCTCTTG +
Preference number: 5 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGPVLVS*EDLRLL
Trigger: CAAGAGACGTAGGTCCTCCAAAGACACGAGCACCGG...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGAGCACCTTCTCTGCCTaGGGTCCGCGCTTGTTGTCA +
Preference number: 5 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQSTFSA*GPRLLS
Trigger: TGACAACAAGCGCGGACCCAAGGCAGAGAAGGTGCT...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp TCTGCCTTGGACTCACGCTCCTCCAGCAACGTCTCCAGGCGCTTCTaGGCTGCCCGGCCCTCGTGGTCATCGCTGACCAGCAGGATGATA +
Preference number: 5 (lower is better)
Translates to: SALDSRSSSNVSRRF*AARPSWSSLTSRMI
Trigger: TATCATCCTGCTGGTCAGCGATGACCACGAGGGCCGGGCAGCGCAGAAGCGCCTGGAGACGTTGCTGGAGGAGCGTGAGTCCAAGGCAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114312.2
ENSMUST00000114314.10
CDS-3UTR CAA 90 bp GCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAGCACCGCGCCGATGTaGACAATCTTGGGGTCGCAG +
Preference number: 5 (lower is better)
Translates to: ASLRPSRAAGLISVLGRASTAPM*TILGSQ
Trigger: CTGCGACCCCAAGATTGTCAACATCGGCGCGGTGCT...AGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCAGCACCGCGCCGATGTaGACAATCTTGGGGTCGCAG +
Preference number: 5 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLASTAPM*TILGSQ
Trigger: CTGCGACCCCAAGATTGTCAACATCGGCGCGGTGCT...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTAGCACCGCGCCGATGTaGACAATCTTGGGGTCGCAG +
Preference number: 5 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRSTAPM*TILGSQ
Trigger: CTGCGACCCCAAGATTGTCAACATCGGCGCGGTGCT...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp TCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGAACATCTGCTCGTGCTaGCGCGTGCTCAGCACCGCG +
Preference number: 5 (lower is better)
Translates to: SGLPEQQDSSVSLAGLTGNICSC*RVLSTA
Trigger: CGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGTT...CCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAAACATCTGCTCGTGCTaGCGCGTGCTCAGCACCGCG +
Preference number: 5 (lower is better)
Translates to: RAPLGSAATRAVKASPGKNICSC*RVLSTA
Trigger: CGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGTT...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGAACATCTGCTCGTGCTaGCGCGTGCTCAGCACCGCG +
Preference number: 5 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWNICSC*RVLSTA
Trigger: CGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGTT...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATTGTATGGCGTTGGGCTaGTGGGTGACAGAAGTGGCG +
Preference number: 5 (lower is better)
Translates to: APQWLGEGTRLDTGRASHCMALG*WVTEVA
Trigger: CGCCACTTCTGTCACCCACAAGCCCAACGCCATACA...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGCCATCTGTATGGCGTaGGGCTTGTGGGTGACAGAA +
Preference number: 5 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPAICMA*GLWVTE
Trigger: TTCTGTCACCCACAAGCCCAACGCCATACAGATGGC...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCAGCACCTTCTCTGCCTaGGACTCACGCTCCTCCAGC +
Preference number: 5 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLASTFSA*DSRSSS
Trigger: GCTGGAGGAGCGTGAGTCCAAGGCAGAGAAGGTGCT...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114312.2
ENSMUST00000114314.10
CDS-3UTR CAA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGTTCCAGATGTTGGTGTaGCCCACGCAACCCCGCGGT +
Preference number: 5 (lower is better)
Translates to: LALGKVGASPVNGVGRVVFQMLV*PTQPRG
Trigger: ACCGCGGGGTTGCGTGGGCAACACCAACATCTGGAA...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCTTCCAGATGTTGGTGTaGCCCACGCAACCCCGCGGT +
Preference number: 5 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGFQMLV*PTQPRG
Trigger: ACCGCGGGGTTGCGTGGGCAACACCAACATCTGGAA...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCACTCCATCTGCATACTaGGAAGACATCAGCACCCTC +
Preference number: 5 (lower is better)
Translates to: RCCAPVARGRHALGHWESTPSAY*EDISTL
Trigger: GAGGGTGCTGATGTCTTCCAAGTATGCAGATGGAGT...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGCCCACTTGCACCAGCTaGCGGTTCTGCAGGTTCATG +
Preference number: 5 (lower is better)
Translates to: QRAPLGSAATRAVKASPGPTCTS*RFCRFM
Trigger: CATGAACCTGCAGAACCGCAAGCTGGTGCAAGTGGG...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GTGGTTATGCGCGCCCGGTGTCCCTGGGGCAGAGGGGCAGCGCGCTGCTGCGCCAGGGTTCTTGGTGGATaGTCACTATCTTTAGTCTGG +
Preference number: 5 (lower is better)
Translates to: VVMRARCPWGRGAARCCARVLGG*SLSLVW
Trigger: CCAGACTAAAGATAGTGACAATCCACCAAGAACCCT...GGCGCAGCAGCGCGCTGCCCCTCTGCCCCAGGGACACCGGGCGCGCATAACCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp TCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCAGGGTTTGACAGGGTCACCATaGACTGTGAACTCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: SCRGCPPGSRAGGREAQGLTGSP*TVNSSL
Trigger: CAAAGAGGAGTTCACAGTCAATGGTGACCCTGTCAA...ACCCTGGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATATGGTCCGTGCCAGCTaGATGAGCAGGTCAACGCAG +
Preference number: 5 (lower is better)
Translates to: APQWLGEGTRLDTGRASHMVRAS*MSRSTQ
Trigger: CTGCGTTGACCTGCTCATCAAGCTGGCACGGACCAT...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGATGGTCCGTGCCAGCTaGATGAGCAGGTCAACGCAG +
Preference number: 5 (lower is better)
Translates to: QRAPLGSAATRAVKASPGMVRAS*MSRSTQ
Trigger: CTGCGTTGACCTGCTCATCAAGCTGGCACGGACCAT...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CTTGGCCGGGCTAACTGGGCAGGTGGGCGCCTCCGGGGGCCTCACACCACGGTGTTCCACTCCTTTTTGTaGCTGTTGTTTACCCGCTCC +
Preference number: 5 (lower is better)
Translates to: LGRANWAGGRLRGPHTTVFHSFL*LLFTRS
Trigger: GGAGCGGGTAAACAACAGCAACAAAAAGGAGTGGAA...CACCGTGGTGTGAGGCCCCCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCGTCAGGCCCTGGTACTaGAAGGGCTTGGAGAACTCT +
Preference number: 5 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSVRPWY*KGLENS
Trigger: AGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGAC...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGTCCCCAATGCCAGAGTaGAGCAGGACGCCCCAGGAA +
Preference number: 5 (lower is better)
Translates to: LALGKVGASPVNGVGRVVSPMPE*SRTPQE
Trigger: TTCCTGGGGCGTCCTGCTCAACTCTGGCATTGGGGA...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCTCCCCAATGCCAGAGTaGAGCAGGACGCCCCAGGAA +
Preference number: 5 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGSPMPE*SRTPQE
Trigger: TTCCTGGGGCGTCCTGCTCAACTCTGGCATTGGGGA...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATAAGGCATGGAGCTTGTaGTCCCGCACAGCCTGGATG +
Preference number: 5 (lower is better)
Translates to: APQWLGEGTRLDTGRASHKAWSL*SRTAWM
Trigger: CATCCAGGCTGTGCGGGACAACAAGCTCCATGCCTT...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGTTCCAGGGGCTGTCCTaGCGCATGCCGATGCCAAAG +
Preference number: 5 (lower is better)
Translates to: LALGKVGASPVNGVGRVVFQGLS*RMPMPK
Trigger: CTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGAA...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGGAGGGATCTGAGAGGTaGAGCGGGCCCGTGATATCA +
Preference number: 5 (lower is better)
Translates to: QRAPLGSAATRAVKASPGEGSER*SGPVIS
Trigger: TGATATCACGGGCCCGCTCAACCTCTCAGATCCCTC...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAGCACCTTCTCTGCCTaGGGTCCGCGCTTGTTGTCA +
Preference number: 5 (lower is better)
Translates to: QRAPLGSAATRAVKASPGSTFSA*GPRLLS
Trigger: TGACAACAAGCGCGGACCCAAGGCAGAGAAGGTGCT...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp CTTGGACTCACGCTCCTCCAGCAACGTCTCCAGGCGCTTCTGCGCTaGCCGGCCCTCGTGGTCATCGCTGACCAGCAGGATGATATGGTT +
Preference number: 5 (lower is better)
Translates to: LGLTLLQQRLQALLR*PALVVIADQQDDMV
Trigger: AACCATATCATCCTGCTGGTCAGCGATGACCACGAGGGCCGGGCAGCGCAGAAGCGCCTGGAGACGTTGCTGGAGGAGCGTGAGTCCAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTTGTATGGCGTTGGGCTaGTGGGTGACAGAAGTGGCG +
Preference number: 5 (lower is better)
Translates to: ASLRPSRAAGLISVLGRACMALG*WVTEVA
Trigger: CGCCACTTCTGTCACCCACAAGCCCAACGCCATACA...AGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCTGTATGGCGTTGGGCTaGTGGGTGACAGAAGTGGCG +
Preference number: 5 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGCMALG*WVTEVA
Trigger: CGCCACTTCTGTCACCCACAAGCCCAACGCCATACA...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAATTCCAGATGTTGGTGTaGCCCACGCAACCCCGCGGT +
Preference number: 5 (lower is better)
Translates to: RAPLGSAATRAVKASPGKFQMLV*PTQPRG
Trigger: ACCGCGGGGTTGCGTGGGCAACACCAACATCTGGAA...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCCCCACTTGCACCAGCTaGCGGTTCTGCAGGTTCATG +
Preference number: 5 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLAPTCTS*RFCRFM
Trigger: CATGAACCTGCAGAACCGCAAGCTGGTGCAAGTGGG...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCCCACTTGCACCAGCTaGCGGTTCTGCAGGTTCATG +
Preference number: 5 (lower is better)
Translates to: APLGSAATRAVKASPGKGPTCTS*RFCRFM
Trigger: CATGAACCTGCAGAACCGCAAGCTGGTGCAAGTGGG...ACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCATTGTAGATGCCCACTaGCACCAGCTTGCGGTTCTG +
Preference number: 5 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGIVDAH*HQLAVL
Trigger: CAGAACCGCAAGCTGGTGCAAGTGGGCATCTACAAT...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CGCTGCTGCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCGTACAGATCACCTTCTaGACAGGGTCACCATTGACT +
Preference number: 5 (lower is better)
Translates to: RCCAPVARGRHALGHWESVQITF*TGSPLT
Trigger: AGTCAATGGTGACCCTGTCAAGAAGGTGATCTGTAC...GCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGCAGCAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTATGGTCCGTGCCAGCTaGATGAGCAGGTCAACGCAG +
Preference number: 5 (lower is better)
Translates to: ASLRPSRAAGLISVLGRAMVRAS*MSRSTQ
Trigger: CTGCGTTGACCTGCTCATCAAGCTGGCACGGACCAT...AGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCATGGTCCGTGCCAGCTaGATGAGCAGGTCAACGCAG +
Preference number: 5 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGMVRAS*MSRSTQ
Trigger: CTGCGTTGACCTGCTCATCAAGCTGGCACGGACCAT...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTATGGTCCGTGCCAGCTaGATGAGCAGGTCAACGCAG +
Preference number: 5 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRMVRAS*MSRSTQ
Trigger: CTGCGTTGACCTGCTCATCAAGCTGGCACGGACCAT...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCTACTGCGCACGCTCATaGTTAATGGTCAGTGGAGCC +
Preference number: 5 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSYCARS*LMVSGA
Trigger: GGCTCCACTGACCATTAACAATGAGCGTGCGCAGTA...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCATACTGCGCACGCTCATaGTTAATGGTCAGTGGAGCC +
Preference number: 5 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPYCARS*LMVSGA
Trigger: GGCTCCACTGACCATTAACAATGAGCGTGCGCAGTA...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGTCCCCAATGCCAGAGTaGAGCAGGACGCCCCAGGAA +
Preference number: 5 (lower is better)
Translates to: VKASPGKGRSQPSEWGGKSPMPE*SRTPQE
Trigger: TTCCTGGGGCGTCCTGCTCAACTCTGGCATTGGGGA...CTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTAAGGCATGGAGCTTGTaGTCCCGCACAGCCTGGATG +
Preference number: 5 (lower is better)
Translates to: APLGSAATRAVKASPGKGKAWSL*SRTAWM
Trigger: CATCCAGGCTGTGCGGGACAACAAGCTCCATGCCTT...ACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGGGACAGGGACACATTTaGCTTCCAGGGGCTGTCCTT +
Preference number: 5 (lower is better)
Translates to: QRAPLGSAATRAVKASPGGQGHI*LPGAVL
Trigger: AAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTCC...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATGGACAGGGACACATTTaGCTTCCAGGGGCTGTCCTT +
Preference number: 5 (lower is better)
Translates to: APQWLGEGTRLDTGRASHGQGHI*LPGAVL
Trigger: AAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTCC...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCTGTGTCTTTTTGGTTTaGCAAAGCGCCGCGTCCACC +
Preference number: 5 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSCVFLV*QSAAST
Trigger: GGTGGACGCGGCGCTTTGCAAAACCAAAAAGACACA...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp TGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCATGGTACTGCGTGTCTTaGGAGGACCTACGTCTCTTG +
Preference number: 5 (lower is better)
Translates to: WEADGTPWCPRCGAPLKPWYCVS*EDLRLL
Trigger: CAAGAGACGTAGGTCCTCCAAAGACACGCAGTACCA...TGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS GCA 90 bp GACGAGCCACACGTACCCAGAGCCAGTCATGTTCAGCATCGCGGCTaGGCGGTATACGGTGGCAGCGTCGTCCTCGCTTGCAGAAAGGAT +
Preference number: 5 (lower is better)
Translates to: DEPHVPRASHVQHRG*AVYGGSVVLACRKD
Trigger: ATCCTTTCTGCAAGCGAGGACGACGCTGCCACCGTATACCGCGCAGCCGCGATGCTGAACATGACTGGCTCTGGGTACGTGTGGCTCGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp TTACTCTTGGACTCACGCTCCTCCAGCAACGTCTCCAGGCGCTTCTaGGCTGCCCGGCCCTCGTGGTCATCGCTGACCAGCAGGATGATA +
Preference number: 5 (lower is better)
Translates to: LLLDSRSSSNVSRRF*AARPSWSSLTSRMI
Trigger: TATCATCCTGCTGGTCAGCGATGACCACGAGGGCCGGGCAGCGCAGAAGCGCCTGGAGACGTTGCTGGAGGAGCGTGAGTCCAAGAGTAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 90 bp CAACCCCGCGGTGGATCAGTGATGTTCTCCTTTTCTAGGAGCTCGTaGACTGCCTGTGCCACCACGCCCACAGCGTCACTGATGTGGGCC +
Preference number: 5 (lower is better)
Translates to: QPRGGSVMFSFSRSS*TACATTPTASLMWA
Trigger: GGCCCACATCAGTGACGCTGTGGGCGTGGTGGCACAGGCAGTCCACGAGCTCCTAGAAAAGGAGAACATCACTGATCCACCGCGGGGTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 90 bp GGGCTTCCAGGTCCCGGGCTTCCATCAGCAGAGCCGTCACATTCTTaGTTCCTGGGTCAAACTGCAGCACCTTCTCTGCCTTGGGTCCGC +
Preference number: 5 (lower is better)
Translates to: GLPGPGLPSAEPSHS*FLGQTAAPSLPWVR
Trigger: GCGGACCCAAGGCAGAGAAGGTGCTGCAGTTTGACCCAGGAACCAAGAATGTGACGGCTCTGCTGATGGAAGCCCGGGACCTGGAAGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTGCCATCTGTATGGCGTaGGGCTTGTGGGTGACAGAA +
Preference number: 5 (lower is better)
Translates to: APLGSAATRAVKASPGKGAICMA*GLWVTE
Trigger: TTCTGTCACCCACAAGCCCAACGCCATACAGATGGC...ACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGCCTGTCTTCCAGATGTaGGTGTTGCCCACGCAACCC +
Preference number: 5 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWPVFQM*VLPTQP
Trigger: GGGTTGCGTGGGCAACACCAACATCTGGAAGACAGG...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCACTCCATCTGCATACTaGGAAGACATCAGCACCCTC +
Preference number: 5 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPTPSAY*EDISTL
Trigger: GAGGGTGCTGATGTCTTCCAAGTATGCAGATGGAGT...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGACTCCATCTGCATACTaGGAAGACATCAGCACCCTC +
Preference number: 5 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQTPSAY*EDISTL
Trigger: GAGGGTGCTGATGTCTTCCAAGTATGCAGATGGAGT...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGATTGTAGATGCCCACTaGCACCAGCTTGCGGTTCTG +
Preference number: 5 (lower is better)
Translates to: QRAPLGSAATRAVKASPGIVDAH*HQLAVL
Trigger: CAGAACCGCAAGCTGGTGCAAGTGGGCATCTACAAT...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CTTGGTCCTGCAGGGGCTGCCCGCCAGGCAGCAGAGCAGGAGGACGGGAGGCCCATACACGAAGGGTTCTaGGTGGATTGTCACTATCTT +
Preference number: 5 (lower is better)
Translates to: LGPAGAARQAAEQEDGRPIHEGF*VDCHYL
Trigger: AAGATAGTGACAATCCACCAAGAACCCTTCGTGTAT...GGGCCTCCCGTCCTCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGTTGACAGGGTCACCATaGACTGTGAACTCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQLTGSP*TVNSSL
Trigger: CAAAGAGGAGTTCACAGTCAATGGTGACCCTGTCAA...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGGTACAGATCACCTTCTaGACAGGGTCACCATTGACT +
Preference number: 5 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQVQITF*TGSPLT
Trigger: AGTCAATGGTGACCCTGTCAAGAAGGTGATCTGTAC...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGTACTGCGCACGCTCATaGTTAATGGTCAGTGGAGCC +
Preference number: 5 (lower is better)
Translates to: QRAPLGSAATRAVKASPGYCARS*LMVSGA
Trigger: GGCTCCACTGACCATTAACAATGAGCGTGCGCAGTA...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGTGGTACTTGAAGGGCTaGGAGAACTCTATGTACTGC +
Preference number: 5 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQWYLKG*ENSMYC
Trigger: GCAGTACATAGAGTTCTCCAAGCCCTTCAAGTACCA...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGTCAGGCCCTGGTACTaGAAGGGCTTGGAGAACTCT +
Preference number: 5 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRVRPWY*KGLENS
Trigger: AGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGAC...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCGTCAGGCCCTGGTACTaGAAGGGCTTGGAGAACTCT +
Preference number: 5 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGVRPWY*KGLENS
Trigger: AGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGAC...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCAAAGGCATGGAGCTTGTaGTCCCGCACAGCCTGGATG +
Preference number: 5 (lower is better)
Translates to: RPSRAAGLISVLGRANWAKAWSL*SRTAWM
Trigger: CATCCAGGCTGTGCGGGACAACAAGCTCCATGCCTT...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGACAGGGACACATTTaGCTTCCAGGGGCTGTCCTT +
Preference number: 5 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLAGQGHI*LPGAVL
Trigger: AAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTCC...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGTGTGTCTTTTTGGTTTaGCAAAGCGCCGCGTCCACC +
Preference number: 5 (lower is better)
Translates to: QRAPLGSAATRAVKASPGCVFLV*QSAAST
Trigger: GGTGGACGCGGCGCTTTGCAAAACCAAAAAGACACA...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGGAGGGATCTGAGAGGTaGAGCGGGCCCGTGATATCA +
Preference number: 5 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWEGSER*SGPVIS
Trigger: TGATATCACGGGCCCGCTCAACCTCTCAGATCCCTC...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp GAGCCGTGTCGCTTATTGGCCTGGTTTACTGCCTCGCGGAACATCTaGTCGTGCTTGCGCGTGCTCAGCACCGCGCCGATGTTGACAATC +
Preference number: 5 (lower is better)
Translates to: EPCRLLAWFTASRNI*SCLRVLSTAPMLTI
Trigger: GATTGTCAACATCGGCGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGTTCCGCGAGGCAGTAAACCAGGCCAATAAGCGACACGGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp TCCACCCCCGGTGCTCTGCAGGTTCTTCCTCCACACGTTCACGGCTaGAAAAGCCAGCTGCATCTGCTTCCTACGGGCATCCTTGTGTCG +
Preference number: 5 (lower is better)
Translates to: STPGALQVLPPHVHG*KSQLHLLPTGILVS
Trigger: CGACACAAGGATGCCCGTAGGAAGCAGATGCAGCTGGCTTTTGCAGCCGTGAACGTGTGGAGGAAGAACCTGCAGAGCACCGGGGGTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114307.8
ENSMUST00000114308.10
CDS-3UTR CAA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAAACATCTGCTCGTGCTaGCGCGTGCTCAGCACCGCG +
Preference number: 5 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARNICSC*RVLSTA
Trigger: CGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGTT...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGGAAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGCCATCTGTATGGCGTaGGGCTTGTGGGTGACAGAA +
Preference number: 5 (lower is better)
Translates to: RKDGAAISAPGSSDRGHLAICMA*GLWVTE
Trigger: TTCTGTCACCCACAAGCCCAACGCCATACAGATGGC...TAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGCCATCTGTATGGCGTaGGGCTTGTGGGTGACAGAA +
Preference number: 5 (lower is better)
Translates to: RAPLGSAATRAVKASPGKAICMA*GLWVTE
Trigger: TTCTGTCACCCACAAGCCCAACGCCATACAGATGGC...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGCCTGTCTTCCAGATGTaGGTGTTGCCCACGCAACCC +
Preference number: 5 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWPVFQM*VLPTQP
Trigger: GGGTTGCGTGGGCAACACCAACATCTGGAAGACAGG...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATACTCCATCTGCATACTaGGAAGACATCAGCACCCTC +
Preference number: 5 (lower is better)
Translates to: APQWLGEGTRLDTGRASHTPSAY*EDISTL
Trigger: GAGGGTGCTGATGTCTTCCAAGTATGCAGATGGAGT...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGTCACTCATTGTGGGCTaGACATACACGAAGGGTTCT +
Preference number: 5 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRSLIVG*TYTKGS
Trigger: AGAACCCTTCGTGTATGTCAAGCCCACAATGAGTGA...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp TCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGGGGCTCACTCATTGTGGGCTaGACATACACGAAGGGTTCT +
Preference number: 5 (lower is better)
Translates to: SALAHPQPLWSAPWSCRGSLIVG*TYTKGS
Trigger: AGAACCCTTCGTGTATGTCAAGCCCACAATGAGTGA...GCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGTTGACAGGGTCACCATaGACTGTGAACTCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRLTGSP*TVNSSL
Trigger: CAAAGAGGAGTTCACAGTCAATGGTGACCCTGTCAA...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCCGTACAGATCACCTTCTaGACAGGGTCACCATTGACT +
Preference number: 5 (lower is better)
Translates to: DGAAISAPGSSDRGHLGPVQITF*TGSPLT
Trigger: AGTCAATGGTGACCCTGTCAAGAAGGTGATCTGTAC...GGGGCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CGGCTCAGCTCTGGCCCATCCTCAGCCGCTCTGGTCCGCACCTTGGTCCTGCAGTGGTACTTGAAGGGCTaGGAGAACTCTATGTACTGC +
Preference number: 5 (lower is better)
Translates to: RLSSGPSSAALVRTLVLQWYLKG*ENSMYC
Trigger: GCAGTACATAGAGTTCTCCAAGCCCTTCAAGTACCA...CTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp TCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGGTCAGGCCCTGGTACTaGAAGGGCTTGGAGAACTCT +
Preference number: 5 (lower is better)
Translates to: SGLPEQQDSSVSLAGLTGVRPWY*KGLENS
Trigger: AGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGAC...CCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCTCCCCAATGCCAGAGTaGAGCAGGACGCCCCAGGAA +
Preference number: 5 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGASPMPE*SRTPQE
Trigger: TTCCTGGGGCGTCCTGCTCAACTCTGGCATTGGGGA...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCTTCCAGGGGCTGTCCTaGCGCATGCCGATGCCAAAG +
Preference number: 5 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGAFQGLS*RMPMPK
Trigger: CTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGAA...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGGCGGGAGTCACATTCTaGATACCGAACCCATGTCTT +
Preference number: 5 (lower is better)
Translates to: QRAPLGSAATRAVKASPGAGVTF*IPNPCL
Trigger: AAGACATGGGTTCGGTATCAAGAATGTGACTCCCGC...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGAGCACCTTCTCTGCCTaGGGTCCGCGCTTGTTGTCA +
Preference number: 5 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWSTFSA*GPRLLS
Trigger: TGACAACAAGCGCGGACCCAAGGCAGAGAAGGTGCT...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp TGTCGCTTATTGGCCTGGTTTACTGCCTCGCGGAACATCTGCTCGTaGTTGCGCGTGCTCAGCACCGCGCCGATGTTGACAATCTTGGGG +
Preference number: 5 (lower is better)
Translates to: CRLLAWFTASRNICS*LRVLSTAPMLTILG
Trigger: CCCCAAGATTGTCAACATCGGCGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGTTCCGCGAGGCAGTAAACCAGGCCAATAAGCGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp GAGCTGTATCTTCCAAGAGCCGTGTCGCTTATTGGCCTGGTTTACTaGCTCGCGGAACATCTGCTCGTGCTTGCGCGTGCTCAGCACCGC +
Preference number: 5 (lower is better)
Translates to: ELYLPRAVSLIGLVY*LAEHLLVLARAQHR
Trigger: GCGGTGCTGAGCACGCGCAAGCACGAGCAGATGTTCCGCGAGGCAGTAAACCAGGCCAATAAGCGACACGGCTCTTGGAAGATACAGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp ACAGGGACACATTTTGCTTCCAGGGGCTGTCCTTGCGCATGCCGATaGCAAAGCCGGAGCGGAAGAACAGCTCACCCGTGGTCACCAGAT +
Preference number: 5 (lower is better)
Translates to: TGTHFASRGCPCACR*QSRSGRTAHPWSPD
Trigger: ATCTGGTGACCACGGGTGAGCTGTTCTTCCGCTCCGGCTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp GTATGGACAGGGACACATTTTGCTTCCAGGGGCTGTCCTTGCGCATaGCGATGCCAAAGCCGGAGCGGAAGAACAGCTCACCCGTGGTCA +
Preference number: 5 (lower is better)
Translates to: VWTGTHFASRGCPCA*RCQSRSGRTAHPWS
Trigger: TGACCACGGGTGAGCTGTTCTTCCGCTCCGGCTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTCCATAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 90 bp CAGGTCCCGGGCTTCCATCAGCAGAGCCGTCACATTCTTGGTTCCTaGGTCAAACTGCAGCACCTTCTCTGCCTTGGACTCACGCTCCTC +
Preference number: 5 (lower is better)
Translates to: QVPGFHQQSRHILGS*VKLQHLLCLGLTLL
Trigger: GAGGAGCGTGAGTCCAAGGCAGAGAAGGTGCTGCAGTTTGACCCAGGAACCAAGAATGTGACGGCTCTGCTGATGGAAGCCCGGGACCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114312.2
ENSMUST00000114314.10
CDS CCA 90 bp GGGCTTCCAGGTCCCGGGCTTCCATCAGCAGAGCCGTCACATTCTTaGTTCCTGGGTCAAACTGCAGCACCTTCTCTGCCTTGGACTCAC +
Preference number: 5 (lower is better)
Translates to: GLPGPGLPSAEPSHS*FLGQTAAPSLPWTH
Trigger: GTGAGTCCAAGGCAGAGAAGGTGCTGCAGTTTGACCCAGGAACCAAGAATGTGACGGCTCTGCTGATGGAAGCCCGGGACCTGGAAGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114312.2
ENSMUST00000114314.10
CDS CCA 90 bp TGCGCATGCCGATGCCAAAGCCGGAGCGGAAGAACAGCTCACCCGTaGTCACCAGATCGCACTTCTGTGAAGCCTCAAACTCCAGCACAG +
Preference number: 5 (lower is better)
Translates to: CACRCQSRSGRTAHP*SPDRTSVKPQTPAQ
Trigger: CTGTGCTGGAGTTTGAGGCTTCACAGAAGTGCGATCTGGTGACCACGGGTGAGCTGTTCTTCCGCTCCGGCTTTGGCATCGGCATGCGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 90 bp CAGGTCCCGGGCTTCCATCAGCAGAGCCGTCACATTCTTGGTTCCTaGGTCAAACTGCAGCACCTTCTCTGCCTTGGGTCCGCGCTTGTT +
Preference number: 5 (lower is better)
Translates to: QVPGFHQQSRHILGS*VKLQHLLCLGSALV
Trigger: AACAAGCGCGGACCCAAGGCAGAGAAGGTGCTGCAGTTTGACCCAGGAACCAAGAATGTGACGGCTCTGCTGATGGAAGCCCGGGACCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCATTCCAGATGTTGGTGTaGCCCACGCAACCCCGCGGT +
Preference number: 5 (lower is better)
Translates to: RREGSALLESGALDIWEPFQMLV*PTQPRG
Trigger: ACCGCGGGGTTGCGTGGGCAACACCAACATCTGGAA...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTACTCCATCTGCATACTaGGAAGACATCAGCACCCTC +
Preference number: 5 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRTPSAY*EDISTL
Trigger: GAGGGTGCTGATGTCTTCCAAGTATGCAGATGGAGT...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGGAAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAATTGTAGATGCCCACTaGCACCAGCTTGCGGTTCTG +
Preference number: 5 (lower is better)
Translates to: RKDGAAISAPGSSDRGHLIVDAH*HQLAVL
Trigger: CAGAACCGCAAGCTGGTGCAAGTGGGCATCTACAAT...TAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCAATTGTAGATGCCCACTaGCACCAGCTTGCGGTTCTG +
Preference number: 5 (lower is better)
Translates to: RPSRAAGLISVLGRANWAIVDAH*HQLAVL
Trigger: CAGAACCGCAAGCTGGTGCAAGTGGGCATCTACAAT...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp ACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCAGGGTTCTTGGTGGATaGTCACTATCTTTAGTCTGG +
Preference number: 5 (lower is better)
Translates to: TGRRMALPGAQGAGLLSSRVLGG*SLSLVW
Trigger: CCAGACTAAAGATAGTGACAATCCACCAAGAACCCT...GCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CAGAGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGTCACTCATTGTGGGCTaGACATACACGAAGGGTTCT +
Preference number: 5 (lower is better)
Translates to: QRAPLGSAATRAVKASPGSLIVG*TYTKGS
Trigger: AGAACCCTTCGTGTATGTCAAGCCCACAATGAGTGA...CCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCCCGTTCCACTCCTTTTaGTTGCTGTTGTTTACCCGC +
Preference number: 5 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGPFHSF*LLLFTR
Trigger: GCGGGTAAACAACAGCAACAAAAAGGAGTGGAACGG...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTCCGTTCCACTCCTTTTaGTTGCTGTTGTTTACCCGC +
Preference number: 5 (lower is better)
Translates to: ASLRPSRAAGLISVLGRAPFHSF*LLLFTR
Trigger: GCGGGTAAACAACAGCAACAAAAAGGAGTGGAACGG...AGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCATCCCCAATGCCAGAGTaGAGCAGGACGCCCCAGGAA +
Preference number: 5 (lower is better)
Translates to: RREGSALLESGALDIWEPSPMPE*SRTPQE
Trigger: TTCCTGGGGCGTCCTGCTCAACTCTGGCATTGGGGA...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGCGGGAGTCACATTCTaGATACCGAACCCATGTCTT +
Preference number: 5 (lower is better)
Translates to: ASPGKGRSQPSEWGGKGRAGVTF*IPNPCL
Trigger: AAGACATGGGTTCGGTATCAAGAATGTGACTCCCGC...ACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGGAGGACCTACGTCTCTaGAAGCTGGAGGCCAGGGTG +
Preference number: 5 (lower is better)
Translates to: DRREGSALLESGALDIWEEDLRL*KLEARV
Trigger: CACCCTGGCCTCCAGCTTCAAGAGACGTAGGTCCTC...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGGGCTCCTCTCAAGCCAGGTTGTCATAGGACAGTaGGTCGAGGTTTTCATAGTT +
Preference number: 5 (lower is better)
Translates to: GRRMALPGAQGAGLLSSQVVIGQ*VEVFIV
Trigger: AACTATGAAAACCTCGACCAACTGTCCTATGACAAC...CTGGCTTGAGAGGAGCCCCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS TCA 90 bp CGCACTTCTGTGAAGCCTCAAACTCCAGCACAGCTGAGTCCCAGATaGAGGCATGGAGCTTGTTGTCCCGCACAGCCTGGATGGCCTCAG +
Preference number: 5 (lower is better)
Translates to: RTSVKPQTPAQLSPR*RHGACCPAQPGWPQ
Trigger: CTGAGGCCATCCAGGCTGTGCGGGACAACAAGCTCCATGCCTTCATCTGGGACTCAGCTGTGCTGGAGTTTGAGGCTTCACAGAAGTGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp GAGCAGGACGCCCCAGGAAAACCACATGGCAGAGGACAGGGTCAGTaGATCCTCCTCCTCCTCCTCGCTGTTCACCTTAAATCGGCCAAA +
Preference number: 5 (lower is better)
Translates to: EQDAPGKPHGRGQGQ*ILLLLLAVHLKSAK
Trigger: TTTGGCCGATTTAAGGTGAACAGCGAGGAGGAGGAGGAGGATGCACTGACCCTGTCCTCTGCCATGTGGTTTTCCTGGGGCGTCCTGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp TCTGAGAGGTTGAGCGGGCCCGTGATATCAGTGGGATGGTACTGCTaGAGGTTCTTCCTCCACACGTTCACGGCTGCAAAAGCCAGCTGC +
Preference number: 5 (lower is better)
Translates to: SERLSGPVISVGWYC*RFFLHTFTAAKASC
Trigger: GCAGCTGGCTTTTGCAGCCGTGAACGTGTGGAGGAAGAACCTGCAGCAGTACCATCCCACTGATATCACGGGCCCGCTCAACCTCTCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114312.2
ENSMUST00000114317.10
CDS CCA 90 bp GTGGCGTTGAGCTGTATCTTCCAAGAGCCGTGTCGCTTATTGGCCTaGTTTACTGCCTCGCGGAACATCTGCTCGTGCTTGCGCGTGCTC +
Preference number: 5 (lower is better)
Translates to: VALSCIFQEPCRLLA*FTASRNICSCLRVL
Trigger: GAGCACGCGCAAGCACGAGCAGATGTTCCGCGAGGCAGTAAACCAGGCCAATAAGCGACACGGCTCTTGGAAGATACAGCTCAACGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAAGCACCGCGCCGATGTaGACAATCTTGGGGTCGCAG +
Preference number: 5 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGSTAPM*TILGSQ
Trigger: CTGCGACCCCAAGATTGTCAACATCGGCGCGGTGCT...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGATGTATGGCGTTGGGCTaGTGGGTGACAGAAGTGGCG +
Preference number: 5 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARCMALG*WVTEVA
Trigger: CGCCACTTCTGTCACCCACAAGCCCAACGCCATACA...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAACTCCATCTGCATACTaGGAAGACATCAGCACCCTC +
Preference number: 5 (lower is better)
Translates to: RAPLGSAATRAVKASPGKTPSAY*EDISTL
Trigger: GAGGGTGCTGATGTCTTCCAAGTATGCAGATGGAGT...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGACTCCATCTGCATACTaGGAAGACATCAGCACCCTC +
Preference number: 5 (lower is better)
Translates to: VKASPGKGRSQPSEWGGKTPSAY*EDISTL
Trigger: GAGGGTGCTGATGTCTTCCAAGTATGCAGATGGAGT...CTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GTGAGTGACACCGGACTGGGAGGCGGATGGCACTCCCTGGTGCCCAAGGTGCGGATACACGAAGGGTTCTaGGTGGATTGTCACTATCTT +
Preference number: 5 (lower is better)
Translates to: VSDTGLGGGWHSLVPKVRIHEGF*VDCHYL
Trigger: AAGATAGTGACAATCCACCAAGAACCCTTCGTGTAT...CCGCACCTTGGGCACCAGGGAGTGCCATCCGCCTCCCAGTCCGGTGTCACTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCTCACTCATTGTGGGCTaGACATACACGAAGGGTTCT +
Preference number: 5 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLASLIVG*TYTKGS
Trigger: AGAACCCTTCGTGTATGTCAAGCCCACAATGAGTGA...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTTCACTCATTGTGGGCTaGACATACACGAAGGGTTCT +
Preference number: 5 (lower is better)
Translates to: ASLRPSRAAGLISVLGRASLIVG*TYTKGS
Trigger: AGAACCCTTCGTGTATGTCAAGCCCACAATGAGTGA...AGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCTTGACAGGGTCACCATaGACTGTGAACTCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLALTGSP*TVNSSL
Trigger: CAAAGAGGAGTTCACAGTCAATGGTGACCCTGTCAA...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTGTACAGATCACCTTCTaGACAGGGTCACCATTGACT +
Preference number: 5 (lower is better)
Translates to: ASLRPSRAAGLISVLGRAVQITF*TGSPLT
Trigger: AGTCAATGGTGACCCTGTCAAGAAGGTGATCTGTAC...AGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAATGGTCCGTGCCAGCTaGATGAGCAGGTCAACGCAG +
Preference number: 5 (lower is better)
Translates to: RREGSALLESGALDIWEPMVRAS*MSRSTQ
Trigger: CTGCGTTGACCTGCTCATCAAGCTGGCACGGACCAT...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGGCTTCCACTCCTTTTTGTaGCTGTTGTTTACCCGCTCC +
Preference number: 5 (lower is better)
Translates to: KDGAAISAPGSSDRGHLGFHSFL*LLFTRS
Trigger: GGAGCGGGTAAACAACAGCAACAAAAAGGAGTGGAA...GCCTAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGCCGTTCCACTCCTTTTaGTTGCTGTTGTTTACCCGC +
Preference number: 5 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWPFHSF*LLLFTR
Trigger: GCGGGTAAACAACAGCAACAAAAAGGAGTGGAACGG...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGGAAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTACCGTTCCACTCCTTTTaGTTGCTGTTGTTTACCCGC +
Preference number: 5 (lower is better)
Translates to: RKDGAAISAPGSSDRGHLPFHSF*LLLFTR
Trigger: GCGGGTAAACAACAGCAACAAAAAGGAGTGGAACGG...TAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCACCGTTCCACTCCTTTTaGTTGCTGTTGTTTACCCGC +
Preference number: 5 (lower is better)
Translates to: RPSRAAGLISVLGRANWAPFHSF*LLLFTR
Trigger: GCGGGTAAACAACAGCAACAAAAAGGAGTGGAACGG...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGTACTGCGCACGCTCATaGTTAATGGTCAGTGGAGCC +
Preference number: 5 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWYCARS*LMVSGA
Trigger: GGCTCCACTGACCATTAACAATGAGCGTGCGCAGTA...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCTGGTACTTGAAGGGCTaGGAGAACTCTATGTACTGC +
Preference number: 5 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLAWYLKG*ENSMYC
Trigger: GCAGTACATAGAGTTCTCCAAGCCCTTCAAGTACCA...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGGGTCGTGTGGTACTTGAAGGGCTaGGAGAACTCTATGTACTGC +
Preference number: 5 (lower is better)
Translates to: LALGKVGASPVNGVGRVVWYLKG*ENSMYC
Trigger: GCAGTACATAGAGTTCTCCAAGCCCTTCAAGTACCA...CACGACCCTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCGTCAGGCCCTGGTACTaGAAGGGCTTGGAGAACTCT +
Preference number: 5 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGAVRPWY*KGLENS
Trigger: AGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGAC...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAAAGGCATGGAGCTTGTaGTCCCGCACAGCCTGGATG +
Preference number: 5 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARKAWSL*SRTAWM
Trigger: CATCCAGGCTGTGCGGGACAACAAGCTCCATGCCTT...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAAAGGCATGGAGCTTGTaGTCCCGCACAGCCTGGATG +
Preference number: 5 (lower is better)
Translates to: RREGSALLESGALDIWEPKAWSL*SRTAWM
Trigger: CATCCAGGCTGTGCGGGACAACAAGCTCCATGCCTT...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGATTCCAGGGGCTGTCCTaGCGCATGCCGATGCCAAAG +
Preference number: 5 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGFQGLS*RMPMPK
Trigger: CTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGAA...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CTGACCGAGGGATCTGAGAGGTTGAGCGGGCCCGTGATATCAGTGGGATGGTACGGACAGGGACACATTTaGCTTCCAGGGGCTGTCCTT +
Preference number: 5 (lower is better)
Translates to: LTEGSERLSGPVISVGWYGQGHI*LPGAVL
Trigger: AAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTCC...GTACCATCCCACTGATATCACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp TCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGGCGGGAGTCACATTCTaGATACCGAACCCATGTCTT +
Preference number: 5 (lower is better)
Translates to: SGLPEQQDSSVSLAGLTGAGVTF*IPNPCL
Trigger: AAGACATGGGTTCGGTATCAAGAATGTGACTCCCGC...CCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGGAAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGCGGGAGTCACATTCTaGATACCGAACCCATGTCTT +
Preference number: 5 (lower is better)
Translates to: RKDGAAISAPGSSDRGHLAGVTF*IPNPCL
Trigger: AAGACATGGGTTCGGTATCAAGAATGTGACTCCCGC...TAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCGGTGCTCGTGTCTTaGGAGGACCTACGTCTCTTG +
Preference number: 5 (lower is better)
Translates to: DRREGSALLESGALDIWEPVLVS*EDLRLL
Trigger: CAAGAGACGTAGGTCCTCCAAAGACACGAGCACCGG...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGGGATCTGAGAGGTaGAGCGGGCCCGTGATATCA +
Preference number: 5 (lower is better)
Translates to: KRRLSPLGVWSPRHLGAREGSER*SGPVIS
Trigger: TGATATCACGGGCCCGCTCAACCTCTCAGATCCCTC...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS TCA 90 bp TCTTCCAGATGTTGGTGTTGCCCACGCAACCCCGCGGTGGATCAGTaGTGTTCTCCTTTTCTAGGAGCTCGTGGACTGCCTGTGCCACCA +
Preference number: 5 (lower is better)
Translates to: SSRCWCCPRNPAVDQ*CSPFLGARGLPVPP
Trigger: TGGTGGCACAGGCAGTCCACGAGCTCCTAGAAAAGGAGAACATCACTGATCCACCGCGGGGTTGCGTGGGCAACACCAACATCTGGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp AGTGGGATGGTACTGCTGCAGGTTCTTCCTCCACACGTTCACGGCTaGAAAAGCCAGCTGCATCTGCTTCCTACGGGCATCCTTGTGTCG +
Preference number: 5 (lower is better)
Translates to: SGMVLLQVLPPHVHG*KSQLHLLPTGILVS
Trigger: CGACACAAGGATGCCCGTAGGAAGCAGATGCAGCTGGCTTTTGCAGCCGTGAACGTGTGGAGGAAGAACCTGCAGCAGTACCATCCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114312.2
ENSMUST00000114317.10
CDS CCA 90 bp GACGCGCATCATCTCAAACCAGACGCTGGACTGGTGGGAGTAGGGTaGTACGGTGCGAAGGAAGCTCAGGTGGATGCTCTTGTCAGAGTA +
Preference number: 5 (lower is better)
Translates to: DAHHLKPDAGLVGVG*YGAKEAQVDALVRV
Trigger: TACTCTGACAAGAGCATCCACCTGAGCTTCCTTCGCACCGTACCACCCTACTCCCACCAGTCCAGCGTCTGGTTTGAGATGATGCGCGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGCCATCTGTATGGCGTaGGGCTTGTGGGTGACAGAA +
Preference number: 5 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARAICMA*GLWVTE
Trigger: TTCTGTCACCCACAAGCCCAACGCCATACAGATGGC...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCAGGGTTCTTGGTGGATaGTCACTATCTTTAGTCTGG +
Preference number: 5 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLARVLGG*SLSLVW
Trigger: CCAGACTAAAGATAGTGACAATCCACCAAGAACCCT...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAATCACTCATTGTGGGCTaGACATACACGAAGGGTTCT +
Preference number: 5 (lower is better)
Translates to: RAPLGSAATRAVKASPGKSLIVG*TYTKGS
Trigger: AGAACCCTTCGTGTATGTCAAGCCCACAATGAGTGA...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGTACAGATCACCTTCTaGACAGGGTCACCATTGACT +
Preference number: 5 (lower is better)
Translates to: RAPLGSAATRAVKASPGKVQITF*TGSPLT
Trigger: AGTCAATGGTGACCCTGTCAAGAAGGTGATCTGTAC...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAATTCCACTCCTTTTTGTaGCTGTTGTTTACCCGCTCC +
Preference number: 5 (lower is better)
Translates to: RAPLGSAATRAVKASPGKFHSFL*LLFTRS
Trigger: GGAGCGGGTAAACAACAGCAACAAAAAGGAGTGGAA...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp ACTAGGGCAGTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGCCGTTCCACTCCTTTTaGTTGCTGTTGTTTACCCGC +
Preference number: 5 (lower is better)
Translates to: TRAVKASPGKGRSQPSEWPFHSF*LLLFTR
Trigger: GCGGGTAAACAACAGCAACAAAAAGGAGTGGAACGG...CCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GTGAAGGCTAGCCCTGGGAAAGGTCGGAGCCAGCCCAGTGAATGGGGTGGGAAGTGGTACTTGAAGGGCTaGGAGAACTCTATGTACTGC +
Preference number: 5 (lower is better)
Translates to: VKASPGKGRSQPSEWGGKWYLKG*ENSMYC
Trigger: GCAGTACATAGAGTTCTCCAAGCCCTTCAAGTACCA...CTTCCCACCCCATTCACTGGGCTGGCTCCGACCTTTCCCAGGGCTAGCCTTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGAGCACCCCTGGTGGTACTTGAAGGGCTaGGAGAACTCTATGTACTGC +
Preference number: 5 (lower is better)
Translates to: SPLGVWSPRHLGAREHPWWYLKG*ENSMYC
Trigger: GCAGTACATAGAGTTCTCCAAGCCCTTCAAGTACCA...CCAGGGGTGCTCTCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGGACAGGGACACATTTaGCTTCCAGGGGCTGTCCTT +
Preference number: 5 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARGQGHI*LPGAVL
Trigger: AAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTCC...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGGGACAGGGACACATTTaGCTTCCAGGGGCTGTCCTT +
Preference number: 5 (lower is better)
Translates to: DRREGSALLESGALDIWEGQGHI*LPGAVL
Trigger: AAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTCC...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GCGCCCCAGTGGCTCGGGGAAGGCACGCGCTTGGACACTGGGAGAGCTAGTCATGTTGTCATAGGACAGTaGGTCGAGGTTTTCATAGTT +
Preference number: 5 (lower is better)
Translates to: APQWLGEGTRLDTGRASHVVIGQ*VEVFIV
Trigger: AACTATGAAAACCTCGACCAACTGTCCTATGACAAC...ATGACTAGCTCTCCCAGTGTCCAAGCGCGTGCCTTCCCCGAGCCACTGGGGCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp GAAGGCATGGAGCTTGTTGTCCCGCACAGCCTGGATGGCCTCAGCTaGACTCTCATAATTGTGCTTCTCCATGTGCCGGTACATGGTGCT +
Preference number: 5 (lower is better)
Translates to: EGMELVVPHSLDGLS*TLIIVLLHVPVHGA
Trigger: AGCACCATGTACCGGCACATGGAGAAGCACAATTATGAGAGTGCAGCTGAGGCCATCCAGGCTGTGCGGGACAACAAGCTCCATGCCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 90 bp AGGTCCTCACACACTGACAGGGCCATCTGTATGGCGTTGGGCTTGTaGGTGACAGAAGTGGCGTTGAGCTGTATCTTCCAAGAGCCGTGT +
Preference number: 5 (lower is better)
Translates to: RSSHTDRAICMALGL*VTEVALSCIFQEPC
Trigger: ACACGGCTCTTGGAAGATACAGCTCAACGCCACTTCTGTCACCCACAAGCCCAACGCCATACAGATGGCCCTGTCAGTGTGTGAGGACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp TGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGCCTGTCTTCCAGATGTaGGTGTTGCCCACGCAACCC +
Preference number: 5 (lower is better)
Translates to: CCKIEIHRQGGPLAPTSGPVFQM*VLPTQP
Trigger: GGGTTGCGTGGGCAACACCAACATCTGGAAGACAGG...CCCCGACGTCGGAGCTAACGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAATTGTAGATGCCCACTaGCACCAGCTTGCGGTTCTG +
Preference number: 5 (lower is better)
Translates to: RREGSALLESGALDIWEPIVDAH*HQLAVL
Trigger: CAGAACCGCAAGCTGGTGCAAGTGGGCATCTACAAT...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGGAAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAAGGGTTCTTGGTGGATaGTCACTATCTTTAGTCTGG +
Preference number: 5 (lower is better)
Translates to: RKDGAAISAPGSSDRGHLRVLGG*SLSLVW
Trigger: CCAGACTAAAGATAGTGACAATCCACCAAGAACCCT...TAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCGGGCTAACTGGGCAAGGGTTCTTGGTGGATaGTCACTATCTTTAGTCTGG +
Preference number: 5 (lower is better)
Translates to: RPSRAAGLISVLGRANWARVLGG*SLSLVW
Trigger: CCAGACTAAAGATAGTGACAATCCACCAAGAACCCT...TGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GGTGGGCTTCCCTCAGGCCTTCCCGAGCAGCAGGACTCATCAGTGTCCTTGGCCATACACGAAGGGTTCTaGGTGGATTGTCACTATCTT +
Preference number: 5 (lower is better)
Translates to: GGLPSGLPEQQDSSVSLAIHEGF*VDCHYL
Trigger: AAGATAGTGACAATCCACCAAGAACCCTTCGTGTAT...GGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGTACTGCGCACGCTCATaGTTAATGGTCAGTGGAGCC +
Preference number: 5 (lower is better)
Translates to: DRREGSALLESGALDIWEYCARS*LMVSGA
Trigger: GGCTCCACTGACCATTAACAATGAGCGTGCGCAGTA...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp TCATCTCAAACCAGACGCTGGACTGGTGGGAGTAGGGTGGTACGGTaGGAAGGAAGCTCAGGTGGATGCTCTTGTCAGAGTAGATGGACA +
Preference number: 5 (lower is better)
Translates to: SSQTRRWTGGSRVVR*EGSSGGCSCQSRWT
Trigger: TGTCCATCTACTCTGACAAGAGCATCCACCTGAGCTTCCTTCGCACCGTACCACCCTACTCCCACCAGTCCAGCGTCTGGTTTGAGATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp ATGAAGCCATTCTCATGGGACTTGAGTATGGACAGGGACACATTTTaGTTCCAGGGGCTGTCCTTGCGCATGCCGATGCCAAAGCCGGAG +
Preference number: 5 (lower is better)
Translates to: MKPFSWDLSMDRDTF*FQGLSLRMPMPKPE
Trigger: CTCCGGCTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTCCATACTCAAGTCCCATGAGAATGGCTTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp ACCACTCTTTCTATCCTGCAGGTTCTTCCTCCACACGTTCACGGCTaGAAAAGCCAGCTGCATCTGCTTCCTACGGGCATCCTTGTGTCG +
Preference number: 5 (lower is better)
Translates to: TTLSILQVLPPHVHG*KSQLHLLPTGILVS
Trigger: CGACACAAGGATGCCCGTAGGAAGCAGATGCAGCTGGCTTTTGCAGCCGTGAACGTGTGGAGGAAGAACCTGCAGGATAGAAAGAGTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS CCA 90 bp AGTGTGCTCCGAGGGATCTCCTTCTTGACCAGAATGGTCAGGCCCTaGTACTTGAAGGGCTTGGAGAACTCTATGTACTGCGCACGCTCA +
Preference number: 5 (lower is better)
Translates to: SVLRGISFLTRMVRP*YLKGLENSMYCARS
Trigger: TGAGCGTGCGCAGTACATAGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGACCATTCTGGTCAAGAAGGAGATCCCTCGGAGCACACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGAGCACCCCTGGGAAGCGCTGCCACTAGGGCAGTGAAGGCTAGCCCTGGGAAAATACACGAAGGGTTCTaGGTGGATTGTCACTATCTT +
Preference number: 5 (lower is better)
Translates to: RAPLGSAATRAVKASPGKIHEGF*VDCHYL
Trigger: AAGATAGTGACAATCCACCAAGAACCCTTCGTGTAT...TTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGCGCTTCCCAGGGGTGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCTCACTCATTGTGGGCTaGACATACACGAAGGGTTCT +
Preference number: 5 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGASLIVG*TYTKGS
Trigger: AGAACCCTTCGTGTATGTCAAGCCCACAATGAGTGA...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp CAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCTTCCACTCCTTTTTGTaGCTGTTGTTTACCCGCTCC +
Preference number: 5 (lower is better)
Translates to: QKRRLSPLGVWSPRHLGAFHSFL*LLFTRS
Trigger: GGAGCGGGTAAACAACAGCAACAAAAAGGAGTGGAA...GGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCGTTCCACTCCTTTTaGTTGCTGTTGTTTACCCGC +
Preference number: 5 (lower is better)
Translates to: DRREGSALLESGALDIWEPFHSF*LLLFTR
Trigger: GCGGGTAAACAACAGCAACAAAAAGGAGTGGAACGG...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGGAAGGATGGGGCTGCCATTTCTGCTCCAGGCTCCTCCGACCGGGGCCACTTAGTTGTCATAGGACAGTaGGTCGAGGTTTTCATAGTT +
Preference number: 5 (lower is better)
Translates to: RKDGAAISAPGSSDRGHLVVIGQ*VEVFIV
Trigger: AACTATGAAAACCTCGACCAACTGTCCTATGACAAC...TAAGTGGCCCCGGTCGGAGGAGCCTGGAGCAGAAATGGCAGCCCCATCCTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp GCCATCTGCCACAAGGTGCACCTCGTAGGTAAAATTCATGGTCCGTaGCAGCTTGATGAGCAGGTCAACGCAGAAGCCATAACAGCACTG +
Preference number: 5 (lower is better)
Translates to: AICHKVHLVGKIHGP*QLDEQVNAEAITAL
Trigger: CAGTGCTGTTATGGCTTCTGCGTTGACCTGCTCATCAAGCTGGCACGGACCATGAATTTTACCTACGAGGTGCACCTTGTGGCAGATGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 90 bp CCTCAGCTGCACTCTCATAATTGTGCTTCTCCATGTGCCGGTACATaGTGCTCAACTCCACCTGCCTCCGGAAGTAGATATCCACAGAGC +
Preference number: 5 (lower is better)
Translates to: PQLHSHNCASPCAGT*CSTPPASGSRYPQS
Trigger: GCTCTGTGGATATCTACTTCCGGAGGCAGGTGGAGTTGAGCACCATGTACCGGCACATGGAGAAGCACAATTATGAGAGTGCAGCTGAGG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGTTGACAGGGTCACCATaGACTGTGAACTCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: DRREGSALLESGALDIWELTGSP*TVNSSL
Trigger: CAAAGAGGAGTTCACAGTCAATGGTGACCCTGTCAA...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGAGTACAGATCACCTTCTaGACAGGGTCACCATTGACT +
Preference number: 5 (lower is better)
Translates to: KRRLSPLGVWSPRHLGARVQITF*TGSPLT
Trigger: AGTCAATGGTGACCCTGTCAAGAAGGTGATCTGTAC...TCTGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp TGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGTACTGCGCACGCTCATaGTTAATGGTCAGTGGAGCC +
Preference number: 5 (lower is better)
Translates to: CCKIEIHRQGGPLAPTSGYCARS*LMVSGA
Trigger: GGCTCCACTGACCATTAACAATGAGCGTGCGCAGTA...CCCCGACGTCGGAGCTAACGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGTGGTACTTGAAGGGCTaGGAGAACTCTATGTACTGC +
Preference number: 5 (lower is better)
Translates to: DRREGSALLESGALDIWEWYLKG*ENSMYC
Trigger: GCAGTACATAGAGTTCTCCAAGCCCTTCAAGTACCA...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp CAGCTGCACTCTCATAATTGTGCTTCTCCATGTGCCGGTACATGGTaGTCAACTCCACCTGCCTCCGGAAGTAGATATCCACAGAGCTCT +
Preference number: 5 (lower is better)
Translates to: QLHSHNCASPCAGTW*STPPASGSRYPQSS
Trigger: AGAGCTCTGTGGATATCTACTTCCGGAGGCAGGTGGAGTTGAGCACCATGTACCGGCACATGGAGAAGCACAATTATGAGAGTGCAGCTG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp ATATCAGTGGGATGGTACTGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGAGCACCTTCTCTGCCTaGGACTCACGCTCCTCCAGC +
Preference number: 5 (lower is better)
Translates to: ISVGWYCCKIEIHRQGGPSTFSA*DSRSSS
Trigger: GCTGGAGGAGCGTGAGTCCAAGGCAGAGAAGGTGCT...CGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCAGTACCATCCCACTGATAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
CDS-3UTR CAA 90 bp GACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGAGGGTTCTTGGTGGATaGTCACTATCTTTAGTCTGG +
Preference number: 5 (lower is better)
Translates to: DRREGSALLESGALDIWERVLGG*SLSLVW
Trigger: CCAGACTAAAGATAGTGACAATCCACCAAGAACCCT...CTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGATTGACAGGGTCACCATaGACTGTGAACTCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGLTGSP*TVNSSL
Trigger: CAAAGAGGAGTTCACAGTCAATGGTGACCCTGTCAA...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGATTCCACTCCTTTTTGTaGCTGTTGTTTACCCGCTCC +
Preference number: 5 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGFHSFL*LLFTRS
Trigger: GGAGCGGGTAAACAACAGCAACAAAAAGGAGTGGAA...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGATGGTACTTGAAGGGCTaGGAGAACTCTATGTACTGC +
Preference number: 5 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGWYLKG*ENSMYC
Trigger: GCAGTACATAGAGTTCTCCAAGCCCTTCAAGTACCA...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp TTTGTTGCTGTTGTTTACCCGCTCCTGTGTGCCAAACTTGCCATCTaGCACAAGGTGCACCTCGTAGGTAAAATTCATGGTCCGTGCCAG +
Preference number: 5 (lower is better)
Translates to: FVAVVYPLLCAKLAI*HKVHLVGKIHGPCQ
Trigger: CTGGCACGGACCATGAATTTTACCTACGAGGTGCACCTTGTGGCAGATGGCAAGTTTGGCACACAGGAGCGGGTAAACAACAGCAACAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 90 bp CTTGGAGAACTCTATGTACTGCGCACGCTCATTGTTAATGGTCAGTaGAGCCACGATCATGTCTGCTTGACCACTGAGCAGCTCTCCCAT +
Preference number: 5 (lower is better)
Translates to: LGELYVLRTLIVNGQ*SHDHVCLTTEQLSH
Trigger: ATGGGAGAGCTGCTCAGTGGTCAAGCAGACATGATCGTGGCTCCACTGACCATTAACAATGAGCGTGCGCAGTACATAGAGTTCTCCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAAGGGTTCTTGGTGGATaGTCACTATCTTTAGTCTGG +
Preference number: 5 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGRVLGG*SLSLVW
Trigger: CCAGACTAAAGATAGTGACAATCCACCAAGAACCCT...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp ATATCAGTGGGATGGTACTGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGATGGTCCGTGCCAGCTaGATGAGCAGGTCAACGCAG +
Preference number: 5 (lower is better)
Translates to: ISVGWYCCKIEIHRQGGPMVRAS*MSRSTQ
Trigger: CTGCGTTGACCTGCTCATCAAGCTGGCACGGACCAT...CGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCAGTACCATCCCACTGATAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp AGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAGCCAGTTGTCATAGGACAGTaGGTCGAGGTTTTCATAGTT +
Preference number: 5 (lower is better)
Translates to: RREGSALLESGALDIWEPVVIGQ*VEVFIV
Trigger: AACTATGAAAACCTCGACCAACTGTCCTATGACAAC...TGGCTCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 90 bp GGAGGTGATAGCCCTAAATGTGGCTTTCTTTTTAGGGTCGGGCTCTaGTCTACCACTCTTTCTATCCTGCAGGTTCTTCCTCCACACGTT +
Preference number: 5 (lower is better)
Translates to: GGDSPKCGFLFRVGL*STTLSILQVLPPHV
Trigger: AACGTGTGGAGGAAGAACCTGCAGGATAGAAAGAGTGGTAGAGCAGAGCCCGACCCTAAAAAGAAAGCCACATTTAGGGCTATCACCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS CCA 90 bp AAGGGTTCTTGGTGGATTGTCACTATCTTTAGTCTGGTGGACATCTaGTATCCTCGAGGCTTCTCTGTCTCTCCTCCTGGCCAGATGATC +
Preference number: 5 (lower is better)
Translates to: KGSWWIVTIFSLVDI*YPRGFSVSPPGQMI
Trigger: GATCATCTGGCCAGGAGGAGAGACAGAGAAGCCTCGAGGATACCAGATGTCCACCAGACTAAAGATAGTGACAATCCACCAAGAACCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp AGACAGAAGAGAAGGCTCAGCCCTCTTGGAGTCTGGAGCCCTAGACATCTGGGAATACACGAAGGGTTCTaGGTGGATTGTCACTATCTT +
Preference number: 5 (lower is better)
Translates to: RQKRRLSPLGVWSPRHLGIHEGF*VDCHYL
Trigger: AAGATAGTGACAATCCACCAAGAACCCTTCGTGTAT...TCCCAGATGTCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS-3UTR CAA 90 bp ATATCAGTGGGATGGTACTGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGATTGTAGATGCCCACTaGCACCAGCTTGCGGTTCTG +
Preference number: 5 (lower is better)
Translates to: ISVGWYCCKIEIHRQGGPIVDAH*HQLAVL
Trigger: CAGAACCGCAAGCTGGTGCAAGTGGGCATCTACAAT...CGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCAGTACCATCCCACTGATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp TGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGTTAGCTCCGACGTCGGGGATACACGAAGGGTTCTaGGTGGATTGTCACTATCTT +
Preference number: 5 (lower is better)
Translates to: CCKIEIHRQGGPLAPTSGIHEGF*VDCHYL
Trigger: AAGATAGTGACAATCCACCAAGAACCCTTCGTGTAT...CCCCGACGTCGGAGCTAACGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS-3UTR CAA 90 bp ATATCAGTGGGATGGTACTGCTGTAAAATAGAAATACACAGACAAGGCGGCCCGATACACGAAGGGTTCTaGGTGGATTGTCACTATCTT +
Preference number: 5 (lower is better)
Translates to: ISVGWYCCKIEIHRQGGPIHEGF*VDCHYL
Trigger: AAGATAGTGACAATCCACCAAGAACCCTTCGTGTAT...CGGGCCGCCTTGTCTGTGTATTTCTATTTTACAGCAGTACCATCCCACTGATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
CDS TCA 72 bp GCTCGTGCTTGCGCGTGCTCAGCACCGCGCCGATGTTaGCAATCTTGGGGTCGCAGGCAGCGCGGGCGAAGG +
Preference number: 6 (lower is better)
Translates to: ARACACSAPRRC*QSWGRRQRGRR
Trigger: CCTTCGCCCGCGCTGCCTGCGACCCCAAGATTGTCAACATCGGCGCGGTGCTGAGCACGCGCAAGCACGAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 72 bp GACTCACGCTCCTCCAGCAACGTCTCCAGGCGCTTCTaGGCTGCCCGGCCCTCGTGGTCATCGCTGACCAGC +
Preference number: 6 (lower is better)
Translates to: DSRSSSNVSRRF*AARPSWSSLTS
Trigger: GCTGGTCAGCGATGACCACGAGGGCCGGGCAGCGCAGAAGCGCCTGGAGACGTTGCTGGAGGAGCGTGAGTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 72 bp ACGCTCCTCCAGCAACGTCTCCAGGCGCTTCTGCGCTaGCCGGCCCTCGTGGTCATCGCTGACCAGCAGGAT +
Preference number: 6 (lower is better)
Translates to: TLLQQRLQALLR*PALVVIADQQD
Trigger: ATCCTGCTGGTCAGCGATGACCACGAGGGCCGGGCAGCGCAGAAGCGCCTGGAGACGTTGCTGGAGGAGCGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 72 bp TGCTCGTGCTTGCGCGTGCTCAGCACCGCGCCGATGTaGACAATCTTGGGGTCGCAGGCAGCGCGGGCGAAG +
Preference number: 6 (lower is better)
Translates to: CSCLRVLSTAPM*TILGSQAARAK
Trigger: CTTCGCCCGCGCTGCCTGCGACCCCAAGATTGTCAACATCGGCGCGGTGCTGAGCACGCGCAAGCACGAGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp CGGAACATCTGCTCGTGCTTGCGCGTGCTCAGCACCGCGCCGATGTaGACAATCTTGGGGTCGCAGGCAGCGCGGGCGAAGGAGCAGGAG +
Preference number: 6 (lower is better)
Translates to: RNICSCLRVLSTAPM*TILGSQAARAKEQE
Trigger: CTCCTGCTCCTTCGCCCGCGCTGCCTGCGACCCCAAGATTGTCAACATCGGCGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGTTCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp TGCTCGTGCTTGCGCGTGCTCAGCACCGCGCCGATGTTGACAATCTaGGGGTCGCAGGCAGCGCGGGCGAAGGAGCAGGAGAAAAGCAGG +
Preference number: 6 (lower is better)
Translates to: CSCLRVLSTAPMLTI*GSQAARAKEQEKSR
Trigger: CCTGCTTTTCTCCTGCTCCTTCGCCCGCGCTGCCTGCGACCCCAAGATTGTCAACATCGGCGCGGTGCTGAGCACGCGCAAGCACGAGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 72 bp CACGTACCCAGAGCCAGTCATGTTCAGCATCGCGGCTaGGCGGTATACGGTGGCAGCGTCGTCCTCGCTTGC +
Preference number: 6 (lower is better)
Translates to: HVPRASHVQHRG*AVYGGSVVLAC
Trigger: GCAAGCGAGGACGACGCTGCCACCGTATACCGCGCAGCCGCGATGCTGAACATGACTGGCTCTGGGTACGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 72 bp CGCTTATTGGCCTGGTTTACTGCCTCGCGGAACATCTaGTCGTGCTTGCGCGTGCTCAGCACCGCGCCGATG +
Preference number: 6 (lower is better)
Translates to: RLLAWFTASRNI*SCLRVLSTAPM
Trigger: CATCGGCGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGTTCCGCGAGGCAGTAAACCAGGCCAATAAGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 72 bp AACGTCTCCAGGCGCTTCTGCGCTGCCCGGCCCTCGTaGTCATCGCTGACCAGCAGGATGATATGGTTCCAG +
Preference number: 6 (lower is better)
Translates to: NVSRRFCAARPS*SSLTSRMIWFQ
Trigger: CTGGAACCATATCATCCTGCTGGTCAGCGATGACCACGAGGGCCGGGCAGCGCAGAAGCGCCTGGAGACGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp CCGCGTCCACCCCCGGTGCTCGTGTCTTTGGAGGACCTACGTCTCTaGAAGCTGGAGGCCAGGGTGGAGGTGATAGCCCTAAATGTGGCT +
Preference number: 6 (lower is better)
Translates to: PRPPPVLVSLEDLRL*KLEARVEVIALNVA
Trigger: AGCCACATTTAGGGCTATCACCTCCACCCTGGCCTCCAGCTTCAAGAGACGTAGGTCCTCCAAAGACACGAGCACCGGGGGTGGACGCGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
CDS GCA 72 bp TTGGCCTGGTTTACTGCCTCGCGGAACATCTGCTCGTaGTTGCGCGTGCTCAGCACCGCGCCGATGTTGACA +
Preference number: 6 (lower is better)
Translates to: LAWFTASRNICS*LRVLSTAPMLT
Trigger: TGTCAACATCGGCGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGTTCCGCGAGGCAGTAAACCAGGCCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 72 bp CATTTTGCTTCCAGGGGCTGTCCTTGCGCATGCCGATaGCAAAGCCGGAGCGGAAGAACAGCTCACCCGTGG +
Preference number: 6 (lower is better)
Translates to: HFASRGCPCACR*QSRSGRTAHPW
Trigger: CCACGGGTGAGCTGTTCTTCCGCTCCGGCTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGAAGCAAAATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 72 bp GCCTGGTTTACTGCCTCGCGGAACATCTGCTCGTGCTaGCGCGTGCTCAGCACCGCGCCGATGTTGACAATC +
Preference number: 6 (lower is better)
Translates to: AWFTASRNICSC*RVLSTAPMLTI
Trigger: GATTGTCAACATCGGCGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGTTCCGCGAGGCAGTAAACCAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 72 bp AATAGCGCGTCGCGGCAGCACTGTGTCTTTTTGGTTTaGCAAAGCGCCGCGTCCACCCCCGGTGCTCGTGTC +
Preference number: 6 (lower is better)
Translates to: NSASRQHCVFLV*QSAASTPGARV
Trigger: GACACGAGCACCGGGGGTGGACGCGGCGCTTTGCAAAACCAAAAAGACACAGTGCTGCCGCGACGCGCTATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
CDS CAA 72 bp AATAGCGCGTCGCGGCAGCACTGTGTCTTTTTGGTTTaGCAAAGCGCCGCGTCCACCCCCGGTGCTCTGCAG +
Preference number: 6 (lower is better)
Translates to: NSASRQHCVFLV*QSAASTPGALQ
Trigger: CTGCAGAGCACCGGGGGTGGACGCGGCGCTTTGCAAAACCAAAAAGACACAGTGCTGCCGCGACGCGCTATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000114307.8
ENSMUST00000114308.10
CDS CAA 90 bp CGCTTATTGGCCTGGTTTACTGCCTCGCGGAACATCTGCTCGTGCTaGCGCGTGCTCAGCACCGCGCCGATGTTGACAATCTTGGGGTCG +
Preference number: 6 (lower is better)
Translates to: RLLAWFTASRNICSC*RVLSTAPMLTILGS
Trigger: CGACCCCAAGATTGTCAACATCGGCGCGGTGCTGAGCACGCGCAAGCACGAGCAGATGTTCCGCGAGGCAGTAAACCAGGCCAATAAGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp CTCCCTCTCAATAGCGCGTCGCGGCAGCACTGTGTCTTTTTGGTTTaGCAAAGCGCCGCGTCCACCCCCGGTGCTCGTGTCTTTGGAGGA +
Preference number: 6 (lower is better)
Translates to: LPLNSASRQHCVFLV*QSAASTPGARVFGG
Trigger: TCCTCCAAAGACACGAGCACCGGGGGTGGACGCGGCGCTTTGCAAAACCAAAAAGACACAGTGCTGCCGCGACGCGCTATTGAGAGGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000028335.13
ENSMUST00000114310.10
CDS CAA 90 bp CTCCCTCTCAATAGCGCGTCGCGGCAGCACTGTGTCTTTTTGGTTTaGCAAAGCGCCGCGTCCACCCCCGGTGCTCTGCAGGTTCTTCCT +
Preference number: 6 (lower is better)
Translates to: LPLNSASRQHCVFLV*QSAASTPGALQVLP
Trigger: AGGAAGAACCTGCAGAGCACCGGGGGTGGACGCGGCGCTTTGCAAAACCAAAAAGACACAGTGCTGCCGCGACGCGCTATTGAGAGGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000114307.8
ENSMUST00000114308.10
CDS GCA 72 bp GGGACACATTTTGCTTCCAGGGGCTGTCCTTGCGCATaGCGATGCCAAAGCCGGAGCGGAAGAACAGCTCAC +
Preference number: 6 (lower is better)
Translates to: GTHFASRGCPCA*RCQSRSGRTAH
Trigger: GTGAGCTGTTCTTCCGCTCCGGCTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGAAGCAAAATGTGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 72 bp TGGTTTTGCAAAGCGCCGCGTCCACCCCCGGTGCTCTaGAGGTTCTTCCTCCACACGTTCACGGCTGCAAAA +
Preference number: 6 (lower is better)
Translates to: WFCKAPRPPPVL*RFFLHTFTAAK
Trigger: TTTTGCAGCCGTGAACGTGTGGAGGAAGAACCTGCAGAGCACCGGGGGTGGACGCGGCGCTTTGCAAAACCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114307.8
ENSMUST00000114308.10
CDS CAA 90 bp GACTTGAGTATGGACAGGGACACATTTTGCTTCCAGGGGCTGTCCTaGCGCATGCCGATGCCAAAGCCGGAGCGGAAGAACAGCTCACCC +
Preference number: 6 (lower is better)
Translates to: DLSMDRDTFCFQGLS*RMPMPKPERKNSSP
Trigger: GGGTGAGCTGTTCTTCCGCTCCGGCTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTCCATACTCAAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 72 bp CTTCCAAGAGCCGTGTCGCTTATTGGCCTGGTTTACTaGCTCGCGGAACATCTGCTCGTGCTTGCGCGTGCT +
Preference number: 6 (lower is better)
Translates to: LPRAVSLIGLVY*LAEHLLVLARA
Trigger: AGCACGCGCAAGCACGAGCAGATGTTCCGCGAGGCAGTAAACCAGGCCAATAAGCGACACGGCTCTTGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 72 bp ACCAGACGCTGGACTGGTGGGAGTAGGGTGGTACGGTaGGAAGGAAGCTCAGGTGGATGCTCTTGTCAGAGT +
Preference number: 6 (lower is better)
Translates to: TRRWTGGSRVVR*EGSSGGCSCQS
Trigger: ACTCTGACAAGAGCATCCACCTGAGCTTCCTTCGCACCGTACCACCCTACTCCCACCAGTCCAGCGTCTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 72 bp TGGACAGGGACACATTTTGCTTCCAGGGGCTGTCCTTaGGCATGCCGATGCCAAAGCCGGAGCGGAAGAACA +
Preference number: 6 (lower is better)
Translates to: WTGTHFASRGCP*ACRCQSRSGRT
Trigger: TGTTCTTCCGCTCCGGCTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 72 bp GGTGCTCTGCAGGTTCTTCCTCCACACGTTCACGGCTaGAAAAGCCAGCTGCATCTGCTTCCTACGGGCATC +
Preference number: 6 (lower is better)
Translates to: GALQVLPPHVHG*KSQLHLLPTGI
Trigger: GATGCCCGTAGGAAGCAGATGCAGCTGGCTTTTGCAGCCGTGAACGTGTGGAGGAAGAACCTGCAGAGCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114307.8
ENSMUST00000114308.10
CDS CCA 72 bp GGTCCCGGGCTTCCATCAGCAGAGCCGTCACATTCTTaGTTCCTGGGTCAAACTGCAGCACCTTCTCTGCCT +
Preference number: 6 (lower is better)
Translates to: GPGLPSAEPSHS*FLGQTAAPSLP
Trigger: AGGCAGAGAAGGTGCTGCAGTTTGACCCAGGAACCAAGAATGTGACGGCTCTGCTGATGGAAGCCCGGGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 72 bp AGCACCCTCTTGAACAGTGGTCCTGTCTTCCAGATGTaGGTGTTGCCCACGCAACCCCGCGGTGGATCAGTG +
Preference number: 6 (lower is better)
Translates to: STLLNSGPVFQM*VLPTQPRGGSV
Trigger: CACTGATCCACCGCGGGGTTGCGTGGGCAACACCAACATCTGGAAGACAGGACCACTGTTCAAGAGGGTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS TCA 72 bp AGCGTAGACCTGGCTAGAGATGAGGTCCTCACACACTaGCAGGGCCATCTGTATGGCGTTGGGCTTGTGGGT +
Preference number: 6 (lower is better)
Translates to: SVDLARDEVLTH*QGHLYGVGLVG
Trigger: ACCCACAAGCCCAACGCCATACAGATGGCCCTGTCAGTGTGTGAGGACCTCATCTCTAGCCAGGTCTACGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS TCA 72 bp TGTTGGTGTTGCCCACGCAACCCCGCGGTGGATCAGTaGTGTTCTCCTTTTCTAGGAGCTCGTGGACTGCCT +
Preference number: 6 (lower is better)
Translates to: CWCCPRNPAVDQ*CSPFLGARGLP
Trigger: AGGCAGTCCACGAGCTCCTAGAAAAGGAGAACATCACTGATCCACCGCGGGGTTGCGTGGGCAACACCAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS TCA 72 bp CCACCAGCAGCCACAGTGTGCTCTGAAAGGGCTGCATaGATGAGTCCAGTGTGCTCCGAGGGATCTCCTTCT +
Preference number: 6 (lower is better)
Translates to: PPAATVCSERAA*MSPVCSEGSPS
Trigger: AGAAGGAGATCCCTCGGAGCACACTGGACTCATTCATGCAGCCCTTTCAGAGCACACTGTGGCTGCTGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS TCA 72 bp GTGAAGCCTCAAACTCCAGCACAGCTGAGTCCCAGATaGAGGCATGGAGCTTGTTGTCCCGCACAGCCTGGA +
Preference number: 6 (lower is better)
Translates to: VKPQTPAQLSPR*RHGACCPAQPG
Trigger: TCCAGGCTGTGCGGGACAACAAGCTCCATGCCTTCATCTGGGACTCAGCTGTGCTGGAGTTTGAGGCTTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 72 bp GTACTGCTGCAGGTTCTTCCTCCACACGTTCACGGCTaGAAAAGCCAGCTGCATCTGCTTCCTACGGGCATC +
Preference number: 6 (lower is better)
Translates to: VLLQVLPPHVHG*KSQLHLLPTGI
Trigger: GATGCCCGTAGGAAGCAGATGCAGCTGGCTTTTGCAGCCGTGAACGTGTGGAGGAAGAACCTGCAGCAGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114312.2
ENSMUST00000114317.10
CDS CCA 72 bp CATCTCAAACCAGACGCTGGACTGGTGGGAGTAGGGTaGTACGGTGCGAAGGAAGCTCAGGTGGATGCTCTT +
Preference number: 6 (lower is better)
Translates to: HLKPDAGLVGVG*YGAKEAQVDAL
Trigger: AAGAGCATCCACCTGAGCTTCCTTCGCACCGTACCACCCTACTCCCACCAGTCCAGCGTCTGGTTTGAGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 72 bp TCCAGTTGTAGACGCGCATCATCTCAAACCAGACGCTaGACTGGTGGGAGTAGGGTGGTACGGTGCGAAGGA +
Preference number: 6 (lower is better)
Translates to: SSCRRASSQTRR*TGGSRVVRCEG
Trigger: TCCTTCGCACCGTACCACCCTACTCCCACCAGTCCAGCGTCTGGTTTGAGATGATGCGCGTCTACAACTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 72 bp TCAAACTCCAGCACAGCTGAGTCCCAGATGAAGGCATaGAGCTTGTTGTCCCGCACAGCCTGGATGGCCTCA +
Preference number: 6 (lower is better)
Translates to: SNSSTAESQMKA*SLLSRTAWMAS
Trigger: TGAGGCCATCCAGGCTGTGCGGGACAACAAGCTCCATGCCTTCATCTGGGACTCAGCTGTGCTGGAGTTTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 72 bp CGATGCCAAAGCCGGAGCGGAAGAACAGCTCACCCGTaGTCACCAGATCGCACTTCTGTGAAGCCTCAAACT +
Preference number: 6 (lower is better)
Translates to: RCQSRSGRTAHP*SPDRTSVKPQT
Trigger: AGTTTGAGGCTTCACAGAAGTGCGATCTGGTGACCACGGGTGAGCTGTTCTTCCGCTCCGGCTTTGGCATCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 72 bp GGCTTCCATCAGCAGAGCCGTCACATTCTTGGTTCCTaGGTCAAACTGCAGCACCTTCTCTGCCTTGGGTCC +
Preference number: 6 (lower is better)
Translates to: GFHQQSRHILGS*VKLQHLLCLGS
Trigger: GGACCCAAGGCAGAGAAGGTGCTGCAGTTTGACCCAGGAACCAAGAATGTGACGGCTCTGCTGATGGAAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 72 bp AGGTCCTCACACACTGACAGGGCCATCTGTATGGCGTaGGGCTTGTGGGTGACAGAAGTGGCGTTGAGCTGT +
Preference number: 6 (lower is better)
Translates to: RSSHTDRAICMA*GLWVTEVALSC
Trigger: ACAGCTCAACGCCACTTCTGTCACCCACAAGCCCAACGCCATACAGATGGCCCTGTCAGTGTGTGAGGACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp ACAGAAGTGGCGTTGAGCTGTATCTTCCAAGAGCCGTGTCGCTTATaGGCCTGGTTTACTGCCTCGCGGAACATCTGCTCGTGCTTGCGC +
Preference number: 6 (lower is better)
Translates to: TEVALSCIFQEPCRL*AWFTASRNICSCLR
Trigger: GCGCAAGCACGAGCAGATGTTCCGCGAGGCAGTAAACCAGGCCAATAAGCGACACGGCTCTTGGAAGATACAGCTCAACGCCACTTCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp ATGAGGTCCTCACACACTGACAGGGCCATCTGTATGGCGTTGGGCTaGTGGGTGACAGAAGTGGCGTTGAGCTGTATCTTCCAAGAGCCG +
Preference number: 6 (lower is better)
Translates to: MRSSHTDRAICMALG*WVTEVALSCIFQEP
Trigger: CGGCTCTTGGAAGATACAGCTCAACGCCACTTCTGTCACCCACAAGCCCAACGCCATACAGATGGCCCTGTCAGTGTGTGAGGACCTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp GAAGACATCAGCACCCTCTTGAACAGTGGTCCTGTCTTCCAGATGTaGGTGTTGCCCACGCAACCCCGCGGTGGATCAGTGATGTTCTCC +
Preference number: 6 (lower is better)
Translates to: EDISTLLNSGPVFQM*VLPTQPRGGSVMFS
Trigger: GGAGAACATCACTGATCCACCGCGGGGTTGCGTGGGCAACACCAACATCTGGAAGACAGGACCACTGTTCAAGAGGGTGCTGATGTCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS TCA 72 bp CAGCAGCCACAGTGTGCTCTGAAAGGGCTGCATGAATaGGTCCAGTGTGCTCCGAGGGATCTCCTTCTTGAC +
Preference number: 6 (lower is better)
Translates to: QQPQCALKGLHE*VQCAPRDLLLD
Trigger: GTCAAGAAGGAGATCCCTCGGAGCACACTGGACTCATTCATGCAGCCCTTTCAGAGCACACTGTGGCTGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 72 bp TTCTTCCTCCACACGTTCACGGCTGCAAAAGCCAGCTaGATCTGCTTCCTACGGGCATCCTTGTGTCGCTTG +
Preference number: 6 (lower is better)
Translates to: FFLHTFTAAKAS*ICFLRASLCRL
Trigger: CAAGCGACACAAGGATGCCCGTAGGAAGCAGATGCAGCTGGCTTTTGCAGCCGTGAACGTGTGGAGGAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 72 bp TTGAGCGGGCCCGTGATATCAGTGGGATGGTACTGCTaGAGGTTCTTCCTCCACACGTTCACGGCTGCAAAA +
Preference number: 6 (lower is better)
Translates to: LSGPVISVGWYC*RFFLHTFTAAK
Trigger: TTTTGCAGCCGTGAACGTGTGGAGGAAGAACCTGCAGCAGTACCATCCCACTGATATCACGGGCCCGCTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114312.2
ENSMUST00000114317.10
CDS CCA 72 bp GGCTTCCATCAGCAGAGCCGTCACATTCTTGGTTCCTaGGTCAAACTGCAGCACCTTCTCTGCCTTGGACTC +
Preference number: 6 (lower is better)
Translates to: GFHQQSRHILGS*VKLQHLLCLGL
Trigger: GAGTCCAAGGCAGAGAAGGTGCTGCAGTTTGACCCAGGAACCAAGAATGTGACGGCTCTGCTGATGGAAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114312.2
ENSMUST00000114314.10
CDS CAA 72 bp GCGTTGAGCTGTATCTTCCAAGAGCCGTGTCGCTTATaGGCCTGGTTTACTGCCTCGCGGAACATCTGCTCG +
Preference number: 6 (lower is better)
Translates to: ALSCIFQEPCRL*AWFTASRNICS
Trigger: CGAGCAGATGTTCCGCGAGGCAGTAAACCAGGCCAATAAGCGACACGGCTCTTGGAAGATACAGCTCAACGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 72 bp CTCTTGAACAGTGGTCCTGTCTTCCAGATGTTGGTGTaGCCCACGCAACCCCGCGGTGGATCAGTGATGTTC +
Preference number: 6 (lower is better)
Translates to: LLNSGPVFQMLV*PTQPRGGSVMF
Trigger: GAACATCACTGATCCACCGCGGGGTTGCGTGGGCAACACCAACATCTGGAAGACAGGACCACTGTTCAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp AGGGCCATCTGTATGGCGTTGGGCTTGTGGGTGACAGAAGTGGCGTaGAGCTGTATCTTCCAAGAGCCGTGTCGCTTATTGGCCTGGTTT +
Preference number: 6 (lower is better)
Translates to: RAICMALGLWVTEVA*SCIFQEPCRLLAWF
Trigger: AAACCAGGCCAATAAGCGACACGGCTCTTGGAAGATACAGCTCAACGCCACTTCTGTCACCCACAAGCCCAACGCCATACAGATGGCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp CATGAAGCCATTCTCATGGGACTTGAGTATGGACAGGGACACATTTaGCTTCCAGGGGCTGTCCTTGCGCATGCCGATGCCAAAGCCGGA +
Preference number: 6 (lower is better)
Translates to: HEAILMGLEYGQGHI*LPGAVLAHADAKAG
Trigger: TCCGGCTTTGGCATCGGCATGCGCAAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTCCATACTCAAGTCCCATGAGAATGGCTTCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 72 bp TTCTCATGGGACTTGAGTATGGACAGGGACACATTTTaGTTCCAGGGGCTGTCCTTGCGCATGCCGATGCCA +
Preference number: 6 (lower is better)
Translates to: FSWDLSMDRDTF*FQGLSLRMPMP
Trigger: TGGCATCGGCATGCGCAAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTCCATACTCAAGTCCCATGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 72 bp AGCTGTATCTTCCAAGAGCCGTGTCGCTTATTGGCCTaGTTTACTGCCTCGCGGAACATCTGCTCGTGCTTG +
Preference number: 6 (lower is better)
Translates to: SCIFQEPCRLLA*FTASRNICSCL
Trigger: CAAGCACGAGCAGATGTTCCGCGAGGCAGTAAACCAGGCCAATAAGCGACACGGCTCTTGGAAGATACAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 72 bp CACACTGACAGGGCCATCTGTATGGCGTTGGGCTTGTaGGTGACAGAAGTGGCGTTGAGCTGTATCTTCCAA +
Preference number: 6 (lower is better)
Translates to: HTDRAICMALGL*VTEVALSCIFQ
Trigger: TTGGAAGATACAGCTCAACGCCACTTCTGTCACCCACAAGCCCAACGCCATACAGATGGCCCTGTCAGTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 72 bp TCACACACTGACAGGGCCATCTGTATGGCGTTGGGCTaGTGGGTGACAGAAGTGGCGTTGAGCTGTATCTTC +
Preference number: 6 (lower is better)
Translates to: SHTDRAICMALG*WVTEVALSCIF
Trigger: GAAGATACAGCTCAACGCCACTTCTGTCACCCACAAGCCCAACGCCATACAGATGGCCCTGTCAGTGTGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 72 bp ATGAATGAGTCCAGTGTGCTCCGAGGGATCTCCTTCTaGACCAGAATGGTCAGGCCCTGGTACTTGAAGGGC +
Preference number: 6 (lower is better)
Translates to: MNESSVLRGISF*TRMVRPWYLKG
Trigger: GCCCTTCAAGTACCAGGGCCTGACCATTCTGGTCAAGAAGGAGATCCCTCGGAGCACACTGGACTCATTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 72 bp ATTCTCATGGGACTTGAGTATGGACAGGGACACATTTaGCTTCCAGGGGCTGTCCTTGCGCATGCCGATGCC +
Preference number: 6 (lower is better)
Translates to: ILMGLEYGQGHI*LPGAVLAHADA
Trigger: GGCATCGGCATGCGCAAGGACAGCCCCTGGAAGCAAAATGTGTCCCTGTCCATACTCAAGTCCCATGAGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp CTAGAGATGAGGTCCTCACACACTGACAGGGCCATCTGTATGGCGTaGGGCTTGTGGGTGACAGAAGTGGCGTTGAGCTGTATCTTCCAA +
Preference number: 6 (lower is better)
Translates to: LEMRSSHTDRAICMA*GLWVTEVALSCIFQ
Trigger: TTGGAAGATACAGCTCAACGCCACTTCTGTCACCCACAAGCCCAACGCCATACAGATGGCCCTGTCAGTGTGTGAGGACCTCATCTCTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp ATCAGCACCCTCTTGAACAGTGGTCCTGTCTTCCAGATGTTGGTGTaGCCCACGCAACCCCGCGGTGGATCAGTGATGTTCTCCTTTTCT +
Preference number: 6 (lower is better)
Translates to: ISTLLNSGPVFQMLV*PTQPRGGSVMFSFS
Trigger: AGAAAAGGAGAACATCACTGATCCACCGCGGGGTTGCGTGGGCAACACCAACATCTGGAAGACAGGACCACTGTTCAAGAGGGTGCTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp GGGCTTCCTGGGGATGTGTCATTAGGCCCCGTACAGATCACCTTCTaGACAGGGTCACCATTGACTGTGAACTCCTCTTTGCATGTGCCA +
Preference number: 6 (lower is better)
Translates to: GLPGDVSLGPVQITF*TGSPLTVNSSLHVP
Trigger: TGGCACATGCAAAGAGGAGTTCACAGTCAATGGTGACCCTGTCAAGAAGGTGATCTGTACGGGGCCTAATGACACATCCCCAGGAAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp ATATCAGTGGGATGGTACTGCGTGTCTTTGGAGGACCTACGTCTCTaGAAGCTGGAGGCCAGGGTGGAGGTGATAGCCCTAAATGTGGCT +
Preference number: 6 (lower is better)
Translates to: ISVGWYCVSLEDLRL*KLEARVEVIALNVA
Trigger: AGCCACATTTAGGGCTATCACCTCCACCCTGGCCTCCAGCTTCAAGAGACGTAGGTCCTCCAAAGACACGCAGTACCATCCCACTGATAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114314.10
ENSMUST00000114318.10
CDS TCA 72 bp TGCCCACTTGCACCAGCTTGCGGTTCTGCAGGTTCATaGTACTATAGTTGGCAAACTTCCGGTCCCCATCCT +
Preference number: 6 (lower is better)
Translates to: CPLAPACGSAGS*YYSWQTSGPHP
Trigger: AGGATGGGGACCGGAAGTTTGCCAACTATAGTATCATGAACCTGCAGAACCGCAAGCTGGTGCAAGTGGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS TCA 72 bp TGGTCAGTGGAGCCACGATCATGTCTGCTTGACCACTaGGCAGCTCTCCCATCATTCCGTTCCACTCCTTTT +
Preference number: 6 (lower is better)
Translates to: WSVEPRSCLLDH*AALPSFRSTPF
Trigger: AAAAGGAGTGGAACGGAATGATGGGAGAGCTGCTCAGTGGTCAAGCAGACATGATCGTGGCTCCACTGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 72 bp TGTATGGCGTTGGGCTTGTGGGTGACAGAAGTGGCGTaGAGCTGTATCTTCCAAGAGCCGTGTCGCTTATTG +
Preference number: 6 (lower is better)
Translates to: CMALGLWVTEVA*SCIFQEPCRLL
Trigger: CAATAAGCGACACGGCTCTTGGAAGATACAGCTCAACGCCACTTCTGTCACCCACAAGCCCAACGCCATACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 72 bp ATCTCCTTCTTGACCAGAATGGTCAGGCCCTGGTACTaGAAGGGCTTGGAGAACTCTATGTACTGCGCACGC +
Preference number: 6 (lower is better)
Translates to: ISFLTRMVRPWY*KGLENSMYCAR
Trigger: GCGTGCGCAGTACATAGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGACCATTCTGGTCAAGAAGGAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp CTCCGAGGGATCTCCTTCTTGACCAGAATGGTCAGGCCCTGGTACTaGAAGGGCTTGGAGAACTCTATGTACTGCGCACGCTCATTGTTA +
Preference number: 6 (lower is better)
Translates to: LRGISFLTRMVRPWY*KGLENSMYCARSLL
Trigger: TAACAATGAGCGTGCGCAGTACATAGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGACCATTCTGGTCAAGAAGGAGATCCCTCGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp CCATCCTCATTGAATTCCACACGGCCAGTCACTCCATCTGCATACTaGGAAGACATCAGCACCCTCTTGAACAGTGGTCCTGTCTTCCAG +
Preference number: 6 (lower is better)
Translates to: PSSLNSTRPVTPSAY*EDISTLLNSGPVFQ
Trigger: CTGGAAGACAGGACCACTGTTCAAGAGGGTGCTGATGTCTTCCAAGTATGCAGATGGAGTGACTGGCCGTGTGGAATTCAATGAGGATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp GTGTCATTAGGCCCCGTACAGATCACCTTCTTGACAGGGTCACCATaGACTGTGAACTCCTCTTTGCATGTGCCATCACTCATTGTGGGC +
Preference number: 6 (lower is better)
Translates to: VSLGPVQITFLTGSP*TVNSSLHVPSLIVG
Trigger: GCCCACAATGAGTGATGGCACATGCAAAGAGGAGTTCACAGTCAATGGTGACCCTGTCAAGAAGGTGATCTGTACGGGGCCTAATGACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp CGCACGCTCATTGTTAATGGTCAGTGGAGCCACGATCATGTCTGCTaGACCACTGAGCAGCTCTCCCATCATTCCGTTCCACTCCTTTTT +
Preference number: 6 (lower is better)
Translates to: RTLIVNGQWSHDHVC*TTEQLSHHSVPLLF
Trigger: AAAAAGGAGTGGAACGGAATGATGGGAGAGCTGCTCAGTGGTCAAGCAGACATGATCGTGGCTCCACTGACCATTAACAATGAGCGTGCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 72 bp CACAAGGTGCACCTCGTAGGTAAAATTCATGGTCCGTaGCAGCTTGATGAGCAGGTCAACGCAGAAGCCATA +
Preference number: 6 (lower is better)
Translates to: HKVHLVGKIHGP*QLDEQVNAEAI
Trigger: TATGGCTTCTGCGTTGACCTGCTCATCAAGCTGGCACGGACCATGAATTTTACCTACGAGGTGCACCTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 72 bp TGGTGGATTGTCACTATCTTTAGTCTGGTGGACATCTaGTATCCTCGAGGCTTCTCTGTCTCTCCTCCTGGC +
Preference number: 6 (lower is better)
Translates to: WWIVTIFSLVDI*YPRGFSVSPPG
Trigger: GCCAGGAGGAGAGACAGAGAAGCCTCGAGGATACCAGATGTCCACCAGACTAAAGATAGTGACAATCCACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 72 bp CTCTATGTACTGCGCACGCTCATTGTTAATGGTCAGTaGAGCCACGATCATGTCTGCTTGACCACTGAGCAG +
Preference number: 6 (lower is better)
Translates to: LYVLRTLIVNGQ*SHDHVCLTTEQ
Trigger: CTGCTCAGTGGTCAAGCAGACATGATCGTGGCTCCACTGACCATTAACAATGAGCGTGCGCAGTACATAGAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 72 bp GGGGATGTGTCATTAGGCCCCGTACAGATCACCTTCTaGACAGGGTCACCATTGACTGTGAACTCCTCTTTG +
Preference number: 6 (lower is better)
Translates to: GDVSLGPVQITF*TGSPLTVNSSL
Trigger: CAAAGAGGAGTTCACAGTCAATGGTGACCCTGTCAAGAAGGTGATCTGTACGGGGCCTAATGACACATCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 72 bp CTGAGCAGCTCTCCCATCATTCCGTTCCACTCCTTTTaGTTGCTGTTGTTTACCCGCTCCTGTGTGCCAAAC +
Preference number: 6 (lower is better)
Translates to: LSSSPIIPFHSF*LLLFTRSCVPN
Trigger: GTTTGGCACACAGGAGCGGGTAAACAACAGCAACAAAAAGGAGTGGAACGGAATGATGGGAGAGCTGCTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 72 bp GTTGTTTACCCGCTCCTGTGTGCCAAACTTGCCATCTaGCACAAGGTGCACCTCGTAGGTAAAATTCATGGT +
Preference number: 6 (lower is better)
Translates to: VVYPLLCAKLAI*HKVHLVGKIHG
Trigger: ACCATGAATTTTACCTACGAGGTGCACCTTGTGGCAGATGGCAAGTTTGGCACACAGGAGCGGGTAAACAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 72 bp TTGAATTCCACACGGCCAGTCACTCCATCTGCATACTaGGAAGACATCAGCACCCTCTTGAACAGTGGTCCT +
Preference number: 6 (lower is better)
Translates to: LNSTRPVTPSAY*EDISTLLNSGP
Trigger: AGGACCACTGTTCAAGAGGGTGCTGATGTCTTCCAAGTATGCAGATGGAGTGACTGGCCGTGTGGAATTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 72 bp AGCAGCTCTCCCATCATTCCGTTCCACTCCTTTTTGTaGCTGTTGTTTACCCGCTCCTGTGTGCCAAACTTG +
Preference number: 6 (lower is better)
Translates to: SSSPIIPFHSFL*LLFTRSCVPNL
Trigger: CAAGTTTGGCACACAGGAGCGGGTAAACAACAGCAACAAAAAGGAGTGGAACGGAATGATGGGAGAGCTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 72 bp ATTGTTAATGGTCAGTGGAGCCACGATCATGTCTGCTaGACCACTGAGCAGCTCTCCCATCATTCCGTTCCA +
Preference number: 6 (lower is better)
Translates to: IVNGQWSHDHVC*TTEQLSHHSVP
Trigger: TGGAACGGAATGATGGGAGAGCTGCTCAGTGGTCAAGCAGACATGATCGTGGCTCCACTGACCATTAACAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 72 bp TTGACCAGAATGGTCAGGCCCTGGTACTTGAAGGGCTaGGAGAACTCTATGTACTGCGCACGCTCATTGTTA +
Preference number: 6 (lower is better)
Translates to: LTRMVRPWYLKG*ENSMYCARSLL
Trigger: TAACAATGAGCGTGCGCAGTACATAGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGACCATTCTGGTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp CTTCCTGTCATTTGGGATGACATGGGTACCATTGTAGATGCCCACTaGCACCAGCTTGCGGTTCTGCAGGTTCATGATACTATAGTTGGC +
Preference number: 6 (lower is better)
Translates to: LPVIWDDMGTIVDAH*HQLAVLQVHDTIVG
Trigger: GCCAACTATAGTATCATGAACCTGCAGAACCGCAAGCTGGTGCAAGTGGGCATCTACAATGGTACCCATGTCATCCCAAATGACAGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp ATCTCCTTCTTGACCAGAATGGTCAGGCCCTGGTACTTGAAGGGCTaGGAGAACTCTATGTACTGCGCACGCTCATTGTTAATGGTCAGT +
Preference number: 6 (lower is better)
Translates to: ISFLTRMVRPWYLKG*ENSMYCARSLLMVS
Trigger: ACTGACCATTAACAATGAGCGTGCGCAGTACATAGAGTTCTCCAAGCCCTTCAAGTACCAGGGCCTGACCATTCTGGTCAAGAAGGAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS TCA 72 bp TACTATAGTTGGCAAACTTCCGGTCCCCATCCTCATTaGATTCCACACGGCCAGTCACTCCATCTGCATACT +
Preference number: 6 (lower is better)
Translates to: YYSWQTSGPHPH*IPHGQSLHLHT
Trigger: AGTATGCAGATGGAGTGACTGGCCGTGTGGAATTCAATGAGGATGGGGACCGGAAGTTTGCCAACTATAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS GCA 72 bp ATCCTCATTGAATTCCACACGGCCAGTCACTCCATCTaGATACTTGGAAGACATCAGCACCCTCTTGAACAG +
Preference number: 6 (lower is better)
Translates to: ILIEFHTASHSI*ILGRHQHPLEQ
Trigger: CTGTTCAAGAGGGTGCTGATGTCTTCCAAGTATGCAGATGGAGTGACTGGCCGTGTGGAATTCAATGAGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 72 bp AGGGTTCTTGGTGGATTGTCACTATCTTTAGTCTGGTaGACATCTGGTATCCTCGAGGCTTCTCTGTCTCTC +
Preference number: 6 (lower is better)
Translates to: RVLGGLSLSLVW*TSGILEASLSL
Trigger: GAGAGACAGAGAAGCCTCGAGGATACCAGATGTCCACCAGACTAAAGATAGTGACAATCCACCAAGAACCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 72 bp CGAAGGGTTCTTGGTGGATTGTCACTATCTTTAGTCTaGTGGACATCTGGTATCCTCGAGGCTTCTCTGTCT +
Preference number: 6 (lower is better)
Translates to: RRVLGGLSLSLV*WTSGILEASLS
Trigger: AGACAGAGAAGCCTCGAGGATACCAGATGTCCACCAGACTAAAGATAGTGACAATCCACCAAGAACCCTTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS TCA 72 bp ACTCCTCTTTGCATGTGCCATCACTCATTGTGGGCTTaGCATACACGAAGGGTTCTTGGTGGATTGTCACTA +
Preference number: 6 (lower is better)
Translates to: TPLCMCHHSLWA*HTRRVLGGLSL
Trigger: TAGTGACAATCCACCAAGAACCCTTCGTGTATGTCAAGCCCACAATGAGTGATGGCACATGCAAAGAGGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 72 bp CTCATTGTGGGCTTGACATACACGAAGGGTTCTTGGTaGATTGTCACTATCTTTAGTCTGGTGGACATCTGG +
Preference number: 6 (lower is better)
Translates to: LIVGLTYTKGSW*IVTIFSLVDIW
Trigger: CCAGATGTCCACCAGACTAAAGATAGTGACAATCCACCAAGAACCCTTCGTGTATGTCAAGCCCACAATGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 72 bp AACTCCTCTTTGCATGTGCCATCACTCATTGTGGGCTaGACATACACGAAGGGTTCTTGGTGGATTGTCACT +
Preference number: 6 (lower is better)
Translates to: NSSLHVPSLIVG*TYTKGSWWIVT
Trigger: AGTGACAATCCACCAAGAACCCTTCGTGTATGTCAAGCCCACAATGAGTGATGGCACATGCAAAGAGGAGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CCA 72 bp TCACTCATTGTGGGCTTGACATACACGAAGGGTTCTTaGTGGATTGTCACTATCTTTAGTCTGGTGGACATC +
Preference number: 6 (lower is better)
Translates to: SLIVGLTYTKGS*WIVTIFSLVDI
Trigger: GATGTCCACCAGACTAAAGATAGTGACAATCCACCAAGAACCCTTCGTGTATGTCAAGCCCACAATGAGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10
CDS CAA 90 bp TTGACTGTGAACTCCTCTTTGCATGTGCCATCACTCATTGTGGGCTaGACATACACGAAGGGTTCTTGGTGGATTGTCACTATCTTTAGT +
Preference number: 6 (lower is better)
Translates to: LTVNSSLHVPSLIVG*TYTKGSWWIVTIFS
Trigger: ACTAAAGATAGTGACAATCCACCAAGAACCCTTCGTGTATGTCAAGCCCACAATGAGTGATGGCACATGCAAAGAGGAGTTCACAGTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028335.13
ENSMUST00000114307.8
ENSMUST00000114308.10
ENSMUST00000114310.10
ENSMUST00000114312.2
ENSMUST00000114314.10
ENSMUST00000114317.10
ENSMUST00000114318.10