RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GRIK5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000003378

Ensembl transcript IDs: ENSMUST00000003468.10, ENSMUST00000205328.2, ENSMUST00000206134.2

Found 265 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CGCCCGCGTCCCCGCCCGCGCCGGCCGAGTAGAGCTTGCCGTTGCTaGGTCGCATCTCGCGGACTGCGCGCAGCGACAGCAGGGCCCGGC +
Preference number: 1 (lower is better)
Translates to: RPRPRPRRPSRACRC*VASRGLRAATAGPG
Trigger: GCCGGGCCCTGCTGTCGCTGCGCGCAGTCCGCGAGATGCGACTCAGCAACGGCAAGCTCTACTCGGCCGGCGCGGGCGGGGACGCGGGCG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR GCA 90 bp GCCGGCCGAGTAGAGCTTGCCGTTGCTGAGTCGCATCTCGCGGACTaGGCGCAGCGACAGCAGGGCCCGGCTCGGGCCACCAGGGCGCCG +
Preference number: 1 (lower is better)
Translates to: AGRVELAVAESHLAD*AQRQQGPARATRAP
Trigger: CGGCGCCCTGGTGGCCCGAGCCGGGCCCTGCTGTCGCTGCGCGCAGTCCGCGAGATGCGACTCAGCAACGGCAAGCTCTACTCGGCCGGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR CCA 90 bp CCCCGCGGACCGCTTTCCAACTCCGGGAGCAGCCCCCACAGTCCGTaGCCCTTAGAGTCCTCGGTCTCTGCGCTCCTCCCGTCCACGGTG +
Preference number: 1 (lower is better)
Translates to: PRGPLSNSGSSPHSP*PLESSVSALLPSTV
Trigger: CACCGTGGACGGGAGGAGCGCAGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCCGGAGTTGGAAAGCGGTCCGCGGGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR CCA 90 bp CGCCGGCGCCGGCGGGAACGCGAGGTCTTTCGGCAAGACACGGCGTaGCGTAGCTCCTGCAGCATCTCCTGGCACACCGACACCTCCTCG +
Preference number: 1 (lower is better)
Translates to: RRRRREREVFRQDTA*RSSCSISWHTDTSS
Trigger: CGAGGAGGTGTCGGTGTGCCAGGAGATGCTGCAGGAGCTACGCCACGCCGTGTCTTGCCGAAAGACCTCGCGTTCCCGCCGGCGCCGGCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR CCA 90 bp GTGGAGAGCCGTGTCAAGTCTTGGGGCATCTGGGCAGTCCCAGGTTaGGGTCCTCCCCGCGGACCGCTTTCCAACTCCGGGAGCAGCCCC +
Preference number: 1 (lower is better)
Translates to: VESRVKSWGIWAVPG*GPPRGPLSNSGSSP
Trigger: GGGGCTGCTCCCGGAGTTGGAAAGCGGTCCGCGGGGAGGACCCCAACCTGGGACTGCCCAGATGCCCCAAGACTTGACACGGCTCTCCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR GCA 90 bp CGGGAACGCGAGGTCTTTCGGCAAGACACGGCGTGGCGTAGCTCCTaGAGCATCTCCTGGCACACCGACACCTCCTCGGACTCCGCTGAC +
Preference number: 1 (lower is better)
Translates to: REREVFRQDTAWRSS*SISWHTDTSSDSAD
Trigger: GTCAGCGGAGTCCGAGGAGGTGTCGGTGTGCCAGGAGATGCTGCAGGAGCTACGCCACGCCGTGTCTTGCCGAAAGACCTCGCGTTCCCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR TCA 90 bp GTCATGGTGGAGCCAGCGTGGATAGTGCCGTACTCAATGTTGGTCTaGTCCGCCAGGTCGTCAGCCGACTCCACCGGCACCTCCATGCGC +
Preference number: 1 (lower is better)
Translates to: VMVEPAWIVPYSMLV*SARSSADSTGTSMR
Trigger: GCGCATGGAGGTGCCGGTGGAGTCGGCTGACGACCTGGCGGATCAGACCAACATTGAGTACGGCACTATCCACGCTGGCTCCACCATGAC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR GCA 90 bp GATGAGTTCTCCAACCATGCCTGTCCAGGAACCGTTGGGCTCAGGTaGCCCGTAGAGTCCGTCCTCTACCAACCGCAGGCGGTATCGGAA +
Preference number: 1 (lower is better)
Translates to: DEFSNHACPGTVGLR*PVESVLYQPQAVSE
Trigger: TTCCGATACCGCCTGCGGTTGGTAGAGGACGGACTCTACGGGGCACCTGAGCCCAACGGTTCCTGGACAGGCATGGTTGGAGAACTCATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR TCA 90 bp CATCCAATGTCATGGGCACTGCCAGTGTTTAGGGCTCAGCTTGGTTaGTCATCCATCAGAAAAGAACCCGGGTGCTGGGCCTGGGGGCAT +
Preference number: 1 (lower is better)
Translates to: HPMSWALPVFRAQLG*SSIRKEPGCWAWGH
Trigger: ATGCCCCCAGGCCCAGCACCCGGGTTCTTTTCTGATGGATGATCAACCAAGCTGAGCCCTAAACACTGGCAGTGCCCATGACATTGGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
3UTR TCA 90 bp CAGGATGGGAAAGTCCATGGTGGTGAGGATGTACTTGTAAAACGCTaGGGTCATTCCCAGCTCCGAAGCCTTACGGAGGACAAGGTGGGA +
Preference number: 1 (lower is better)
Translates to: QDGKVHGGEDVLVKR*GHSQLRSLTEDKVG
Trigger: TCCCACCTTGTCCTCCGTAAGGCTTCGGAGCTGGGAATGACCTCAGCGTTTTACAAGTACATCCTCACCACCATGGACTTTCCCATCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205328.2
3UTR-3UTR GCA 90 bp CAGGAGGTCCGGGGTCGTCCAGGAGGCGCTGCGGACCCCCGTGCGCGCCCGCGTTCGCATCTCGCGGACTaGGCGCAGCGACAGCAGGGC +
Preference number: 2 (lower is better)
Translates to: QEVRGRPGGAADPRARPRSHLAD*AQRQQG
Trigger: GCCCTGCTGTCGCTGCGCGCAGTCCGCGAGATGCGA...ACGCGGGCGCGCACGGGGGTCCGCAGCGCCTCCTGGACGACCCCGGACCTCCTG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp CAGGAGGTCCGGGGTCGTCCAGGAGGCGCTGCGGACCCCCGTGCGCGCCCGCGTTTACGGAGGACAAGGTaGGAGATGGACGCATTGGCA +
Preference number: 2 (lower is better)
Translates to: QEVRGRPGGAADPRARPRLRRTR*EMDALA
Trigger: TGCCAATGCGTCCATCTCCCACCTTGTCCTCCGTAA...ACGCGGGCGCGCACGGGGGTCCGCAGCGCCTCCTGGACGACCCCGGACCTCCTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000205328.2
3UTR-3UTR TCA 90 bp GGACTGGGATGTGGCAGGGGGAGGTATAGGGGCCCAAGAGACCCTCTCCCTGGGGCTCGGCCAGCTCCCTaGGCATGTCCACGCAGAAGC +
Preference number: 2 (lower is better)
Translates to: GLGCGRGRYRGPRDPLPGARPAP*ACPRRS
Trigger: GCTTCTGCGTGGACATGCTCAGGGAGCTGGCCGAGC...CCCAGGGAGAGGGTCTCTTGGGCCCCTATACCTCCCCCTGCCACATCCCAGTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR GCA 90 bp CGCCGGCGGGAACGCGAGGTCTTTCGGCAAGACACGGCGTGGCGTAGCTCCTGCCGTCCGCGACACCCTTaGTCAAGTCCACTAGGAGGC +
Preference number: 2 (lower is better)
Translates to: RRREREVFRQDTAWRSSCRPRHP*SSPLGG
Trigger: GCCTCCTAGTGGACTTGAGCAAGGGTGTCGCGGACG...GCAGGAGCTACGCCACGCCGTGTCTTGCCGAAAGACCTCGCGTTCCCGCCGGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR GCA 90 bp GCCGTTGCTGAGTCGCATCTCGCGGACTGCGCGCAGCGACAGCAGGGCCCGGCTCAGGGCCAGGATAGGTaGTGGCTTCACAGTTCTCCC +
Preference number: 2 (lower is better)
Translates to: AVAESHLADCAQRQQGPAQGQDR*WLHSSP
Trigger: GGGAGAACTGTGAAGCCAGCACCTATCCTGGCCCTG...AGCCGGGCCCTGCTGTCGCTGCGCGCAGTCCGCGAGATGCGACTCAGCAACGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp GCCCCCGAAGCTCGCAGCGCCTGGATGCGCCTGCACTCCTGGCAGACGCGCACGCATAAGGGCTCAGCCTaGCAGCCAGGAACAAGACAC +
Preference number: 2 (lower is better)
Translates to: APEARSAWMRLHSWQTRTHKGSA*QPGTRH
Trigger: GTGTCTTGTTCCTGGCTGCCAGGCTGAGCCCTTATG...CGTGCGCGTCTGCCAGGAGTGCAGGCGCATCCAGGCGCTGCGAGCTTCGGGGGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp ACCAGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGATGTGGTCCTCCTCCTTaGGGCACCGGCCGCCCTCCC +
Preference number: 2 (lower is better)
Translates to: TRGHPHVQRPSPPPEVWRCGPPP*GTGRPP
Trigger: GGGAGGGCGGCCGGTGCCCCAAGGAGGAGGACCACA...TCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCTGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp GAGGCGCAGGCCTGCTCCGGAGCCGGGCTCGGACTTCACCAGGAATTGAAGGCAAGCCCCCACAGTCCGTaGCCCTTAGAGTCCTCGGTC +
Preference number: 2 (lower is better)
Translates to: EAQACSGAGLGLHQELKASPHSP*PLESSV
Trigger: GACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCT...TGCCTTCAATTCCTGGTGAAGTCCGAGCCCGGCTCCGGAGCAGGCCTGCGCCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp GAGCTTGCCGTTGCTGAGTCGCATCTCGCGGACTGCGCGCAGCGACAGCAGGGCATCTCACGGTGGCCCTaGCGGGACTTCTCCAGGATG +
Preference number: 2 (lower is better)
Translates to: ELAVAESHLADCAQRQQGISRWP*RDFSRM
Trigger: CATCCTGGAGAAGTCCCGCCAGGGCCACCGTGAGAT...GCCCTGCTGTCGCTGCGCGCAGTCCGCGAGATGCGACTCAGCAACGGCAAGCTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp CGCGCCGGCCGAGTAGAGCTTGCCGTTGCTGAGTCGCATCTCGCGGACTGCGCGTTCCCTGACAAGGCCTaGAAGTTGGGCCGGCGCATA +
Preference number: 2 (lower is better)
Translates to: RAGRVELAVAESHLADCAFPDKA*KLGRRI
Trigger: TATGCGCCGGCCCAACTTCCAGGCCTTGTCAGGGAA...CGCGCAGTCCGCGAGATGCGACTCAGCAACGGCAAGCTCTACTCGGCCGGCGCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp GAGCTTGCCGTTGCTGAGTCGCATCTCGCGGACTGCGCGCAGCGACAGCAGGGCAAGTCTTGGGGCATCTaGGCAGTCCCAGGTTGGGGT +
Preference number: 2 (lower is better)
Translates to: ELAVAESHLADCAQRQQGKSWGI*AVPGWG
Trigger: ACCCCAACCTGGGACTGCCCAGATGCCCCAAGACTT...GCCCTGCTGTCGCTGCGCGCAGTCCGCGAGATGCGACTCAGCAACGGCAAGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR GCA 90 bp ACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCGTGTCAGAGTCCTCGGTCTCTaGGCTCCTCCCGTCCACGGT +
Preference number: 2 (lower is better)
Translates to: TPTCPEALPTSRSVESRVRVLGL*APPVHG
Trigger: ACCGTGGACGGGAGGAGCGCAGAGACCGAGGACTCT...GACACGGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR GCA 90 bp CATGGCCAGGGTCCGGTTAGAGTACCACACCCCTATCTCACGGTGGCCCTGGCGAGAAAAGAACCCGGGTaGTGGGCCTGGGGGCATGGA +
Preference number: 2 (lower is better)
Translates to: HGQGPVRVPHPYLTVALARKEPG*WAWGHG
Trigger: TCCATGCCCCCAGGCCCAGCACCCGGGTTCTTTTCT...CGCCAGGGCCACCGTGAGATAGGGGTGTGGTACTCTAACCGGACCCTGGCCATG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp CAACCGCAGGCGGTATCGGAAGCGCAGCAGCTCGGCCAGCTCCCTGAGCATGTCAAGTCTTGGGGCATCTaGGCAGTCCCAGGTTGGGGT +
Preference number: 2 (lower is better)
Translates to: QPQAVSEAQQLGQLPEHVKSWGI*AVPGWG
Trigger: ACCCCAACCTGGGACTGCCCAGATGCCCCAAGACTT...GACATGCTCAGGGAGCTGGCCGAGCTGCTGCGCTTCCGATACCGCCTGCGGTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp AGCCGGGCTCGGACTTCACCAGGAATTGAAGGCAAAATCGCGGCGTCCTGTCCGCCCGGGTGCTGGGCCTaGGGGCATGGACCTGTAATC +
Preference number: 2 (lower is better)
Translates to: SRARTSPGIEGKIAASCPPGCWA*GHGPVI
Trigger: GATTACAGGTCCATGCCCCCAGGCCCAGCACCCGGG...CGGACAGGACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTCCGAGCCCGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
3UTR-3UTR TCA 90 bp CGCCGGCGGGAACGCGAGGTCTTTCGGCAAGACACGGCGTGGCGTAGCTCCTGCGCAGATGAGGCTAGCTaGGGGGTAGTTAAAGGACTT +
Preference number: 2 (lower is better)
Translates to: RRREREVFRQDTAWRSSCADEAS*GVVKGL
Trigger: AAGTCCTTTAACTACCCCTCAGCTAGCCTCATCTGC...GCAGGAGCTACGCCACGCCGTGTCTTGCCGAAAGACCTCGCGTTCCCGCCGGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000205328.2
3UTR-3UTR TCA 90 bp CCGGTTAGAGTACCACACCCCTATCTCACGGTGGCCCTGGCGGGACTTCTCCAGTGCAGGCCAGTGGCTTaGCGCCAATCTCCTGGCTTC +
Preference number: 2 (lower is better)
Translates to: PVRVPHPYLTVALAGLLQCRPVA*RQSPGF
Trigger: GAAGCCAGGAGATTGGCGTCAAGCCACTGGCCTGCA...CTGGAGAAGTCCCGCCAGGGCCACCGTGAGATAGGGGTGTGGTACTCTAACCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR TCA 90 bp ACCAGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAAGAGCTTGCCGTTGCTaGGTCGCATCTCGCGGACTG +
Preference number: 2 (lower is better)
Translates to: TRGHPHVQRPSPPPEVWRRACRC*VASRGL
Trigger: CAGTCCGCGAGATGCGACTCAGCAACGGCAAGCTCT...TCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp ACCGACACCTCCTCGGACTCCGCTGACCTCCGCGTGGACCAGATGAACTCCATGTGGTTCTCCAGGATATaGGGACGCGCCCGGAGACAC +
Preference number: 2 (lower is better)
Translates to: TDTSSDSADLRVDQMNSMWFSRI*GRARRH
Trigger: GTGTCTCCGGGCGCGTCCCCATATCCTGGAGAACCA...CATGGAGTTCATCTGGTCCACGCGGAGGTCAGCGGAGTCCGAGGAGGTGTCGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR TCA 90 bp CAGGACTGGGATGTGGCAGGGGGAGGTATAGGGGCCCAAGAGACCCTCTCCCTGTACTGGGGTACAGGCTaGCAGATGCGAAGCGAAGGT +
Preference number: 2 (lower is better)
Translates to: QDWDVAGGGIGAQETLSLYWGTG*QMRSEG
Trigger: ACCTTCGCTTCGCATCTGTCAGCCTGTACCCCAGTA...CAGGGAGAGGGTCTCTTGGGCCCCTATACCTCCCCCTGCCACATCCCAGTCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000205328.2
3UTR-3UTR TCA 90 bp CGTAGAGTCCGTCCTCTACCAACCGCAGGCGGTATCGGAAGCGCAGCAGCTCGGGGGAGACTGCCAGGCTaGCATCTTCATTACTGGGGT +
Preference number: 2 (lower is better)
Translates to: RRVRPLPTAGGIGSAAARGRLPG*HLHYWG
Trigger: ACCCCAGTAATGAAGATGTCAGCCTGGCAGTCTCCC...CCGAGCTGCTGCGCTTCCGATACCGCCTGCGGTTGGTAGAGGACGGACTCTACG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000205328.2
3UTR-3UTR TCA 90 bp ACCGACACCTCCTCGGACTCCGCTGACCTCCGCGTGGACCAGATGAACTCCATGTCTGCCCTTTGCTGTTaGACTCAACCCGCCCGGTCA +
Preference number: 2 (lower is better)
Translates to: TDTSSDSADLRVDQMNSMSALCC*TQPARS
Trigger: TGACCGGGCGGGTTGAGTTCAACAGCAAAGGGCAGA...CATGGAGTTCATCTGGTCCACGCGGAGGTCAGCGGAGTCCGAGGAGGTGTCGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR TCA 90 bp CGTAGAGTCCGTCCTCTACCAACCGCAGGCGGTATCGGAAGCGCAGCAGCTCGGGAGTCTGTGACAGGTTaGTGTCCAGGGTGGTGGCAT +
Preference number: 2 (lower is better)
Translates to: RRVRPLPTAGGIGSAAARESVTG*CPGWWH
Trigger: ATGCCACCACCCTGGACATCAACCTGTCACAGACTC...CCGAGCTGCTGCGCTTCCGATACCGCCTGCGGTTGGTAGAGGACGGACTCTACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR TCA 90 bp ACCGACACCTCCTCGGACTCCGCTGACCTCCGCGTGGACCAGATGAACTCCATGGAAGCGCTCATTCCCTaGCAAGGCCTGGAAGTTGGG +
Preference number: 2 (lower is better)
Translates to: TDTSSDSADLRVDQMNSMEALIP*QGLEVG
Trigger: CCCAACTTCCAGGCCTTGTCAGGGAATGAGCGCTTC...CATGGAGTTCATCTGGTCCACGCGGAGGTCAGCGGAGTCCGAGGAGGTGTCGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR GCA 90 bp ACCGACACCTCCTCGGACTCCGCTGACCTCCGCGTGGACCAGATGAACTCCATGCAGGGCCAGGATAGGTaGTGGCTTCACAGTTCTCCC +
Preference number: 2 (lower is better)
Translates to: TDTSSDSADLRVDQMNSMQGQDR*WLHSSP
Trigger: GGGAGAACTGTGAAGCCAGCACCTATCCTGGCCCTG...CATGGAGTTCATCTGGTCCACGCGGAGGTCAGCGGAGTCCGAGGAGGTGTCGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR GCA 90 bp ACCGACACCTCCTCGGACTCCGCTGACCTCCGCGTGGACCAGATGAACTCCATGGGTGATGGTGAAGGCTaGCACAGCCAGGTCTGCCTT +
Preference number: 2 (lower is better)
Translates to: TDTSSDSADLRVDQMNSMGDGEG*HSQVCL
Trigger: AAGGCAGACCTGGCTGTGGCAGCCTTCACCATCACC...CATGGAGTTCATCTGGTCCACGCGGAGGTCAGCGGAGTCCGAGGAGGTGTCGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR GCA 90 bp GCCGTACTCAATGTTGGTCTGATCCGCCAGGTCGTCAGCCGACTCCACCGGCACATGATCTCCGAGCCCTaGTGCATGAAGCCACCCACG +
Preference number: 2 (lower is better)
Translates to: AVLNVGLIRQVVSRLHRHMISEP*CMKPPT
Trigger: CGTGGGTGGCTTCATGCAGCAGGGCTCGGAGATCAT...GTGCCGGTGGAGTCGGCTGACGACCTGGCGGATCAGACCAACATTGAGTACGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp CACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCGTGTCAAAGTCTTGGGGCATCTaGGCAGTCCCAGGTTGGGGT +
Preference number: 2 (lower is better)
Translates to: HPHVQRPSPPPEVWRAVSKSWGI*AVPGWG
Trigger: ACCCCAACCTGGGACTGCCCAGATGCCCCAAGACTT...TGACACGGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp GAGGCGCAGGCCTGCTCCGGAGCCGGGCTCGGACTTCACCAGGAATTGAAGGCACCACCTCCAGAAGTGTaGAGAGCCGTGTCAAGTCTT +
Preference number: 2 (lower is better)
Translates to: EAQACSGAGLGLHQELKAPPPEV*RAVSSL
Trigger: AAGACTTGACACGGCTCTCCACACTTCTGGAGGTGG...TGCCTTCAATTCCTGGTGAAGTCCGAGCCCGGCTCCGGAGCAGGCCTGCGCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR TCA 90 bp TCCAACTCCGGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTGACTTCACCAGGAATTaGAGGCAAAATCGCGGCGTC +
Preference number: 2 (lower is better)
Translates to: SNSGSSPHSPWPLESSVSDFTRN*RQNRGV
Trigger: GACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTC...AGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCCGGAGTTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR TCA 90 bp CGTGGACCAGATGAACTCCATGACCGCCACGAAGACAGCAATGATGAGGCCACAGCTCGGCCAGCTCCCTaGGCATGTCCACGCAGAAGC +
Preference number: 2 (lower is better)
Translates to: RGPDELHDRHEDSNDEATARPAP*ACPRRS
Trigger: GCTTCTGCGTGGACATGCTCAGGGAGCTGGCCGAGC...TGTGGCCTCATCATTGCTGTCTTCGTGGCGGTCATGGAGTTCATCTGGTCCACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR GCA 90 bp TGTTGGTCTGATCCGCCAGGTCGTCAGCCGACTCCACCGGCACCTCCATGCGCTGGGACTTCTCCAGGATaGGTAGTGTGTAGTTGGTCC +
Preference number: 2 (lower is better)
Translates to: CWSDPPGRQPTPPAPPCAGTSPG*VVCSWS
Trigger: GGACCAACTACACACTACGCATCCTGGAGAAGTCCC...AGCGCATGGAGGTGCCGGTGGAGTCGGCTGACGACCTGGCGGATCAGACCAACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp GATAGTGCCGTACTCAATGTTGGTCTGATCCGCCAGGTCGTCAGCCGACTCCACAGCCCCCACAGTCCGTaGCCCTTAGAGTCCTCGGTC +
Preference number: 2 (lower is better)
Translates to: DSAVLNVGLIRQVVSRLHSPHSP*PLESSV
Trigger: GACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCT...GTGGAGTCGGCTGACGACCTGGCGGATCAGACCAACATTGAGTACGGCACTATC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp GAGGCGCAGGCCTGCTCCGGAGCCGGGCTCGGACTTCACCAGGAATTGAAGGCAAAGAGACCCTCTCCCTaGGGGCGTCTCATAGAAATT +
Preference number: 2 (lower is better)
Translates to: EAQACSGAGLGLHQELKAKRPSP*GRLIEI
Trigger: AATTTCTATGAGACGCCCCCAGGGAGAGGGTCTCTT...TGCCTTCAATTCCTGGTGAAGTCCGAGCCCGGCTCCGGAGCAGGCCTGCGCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp CGTAGAGTCCGTCCTCTACCAACCGCAGGCGGTATCGGAAGCGCAGCAGCTCGGATAAGGCTGGTCCCATaGGGCCAAATGTTGGCCGAA +
Preference number: 2 (lower is better)
Translates to: RRVRPLPTAGGIGSAAARIRLVP*GQMLAE
Trigger: TTCGGCCAACATTTGGCCCCATGGGACCAGCCTTAT...CCGAGCTGCTGCGCTTCCGATACCGCCTGCGGTTGGTAGAGGACGGACTCTACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp TGTTGGTCTGATCCGCCAGGTCGTCAGCCGACTCCACCGGCACCTCCATGCGCTATAAGGCTGGTCCCATaGGGCCAAATGTTGGCCGAA +
Preference number: 2 (lower is better)
Translates to: CWSDPPGRQPTPPAPPCAIRLVP*GQMLAE
Trigger: TTCGGCCAACATTTGGCCCCATGGGACCAGCCTTAT...AGCGCATGGAGGTGCCGGTGGAGTCGGCTGACGACCTGGCGGATCAGACCAACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp CAGGGTCCGGTTAGAGTACCACACCCCTATCTCACGGTGGCCCTGGCGGGACTTTTATTCCAACAGGACTaGGATGTGGCAGGGGGAGGT +
Preference number: 2 (lower is better)
Translates to: QGPVRVPHPYLTVALAGLLFQQD*DVAGGG
Trigger: ACCTCCCCCTGCCACATCCCAGTCCTGTTGGAATAA...AAGTCCCGCCAGGGCCACCGTGAGATAGGGGTGTGGTACTCTAACCGGACCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp CACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCGTGTCATTGACGCCAATCTCCTaGCTTCGGTTCAGTTCTCGG +
Preference number: 2 (lower is better)
Translates to: HPHVQRPSPPPEVWRAVSLTPIS*LRFSSR
Trigger: CCGAGAACTGAACCGAAGCCAGGAGATTGGCGTCAA...TGACACGGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR TCA 90 bp TTCTCGGACAGCGCTTACCACCACGTGCACAGCGTCAAACATCAGGGCTGCGGAGTGTCTCCTTGGAGATaGGGAAGCCTCGCACCAGTT +
Preference number: 2 (lower is better)
Translates to: FSDSAYHHVHSVKHQGCGVSPWR*GSLAPV
Trigger: AACTGGTGCGAGGCTTCCTCATCTCCAAGGAGACAC...TCCGCAGCCCTGATGTTTGACGCTGTGCACGTGGTGGTAAGCGCTGTCCGAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205328.2
3UTR-3UTR TCA 90 bp CAGATGAACTCCATGACCGCCACGAAGACAGCAATGATGAGGCCACAGATCAGCAGGCATAGCGGGAGTTaGGGACGCGGGCGATTCCCT +
Preference number: 2 (lower is better)
Translates to: QMNSMTATKTAMMRPQISRHSGS*GRGRFP
Trigger: AGGGAATCGCCCGCGTCCTCAACTCCCGCTATGCCT...GCTGATCTGTGGCCTCATCATTGCTGTCTTCGTGGCGGTCATGGAGTTCATCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR TCA 90 bp GACCGCCACGAAGACAGCAATGATGAGGCCACAGATCAGCACGACAAAAATGCCAGGCATAGCGGGAGTTaGGGACGCGGGCGATTCCCT +
Preference number: 2 (lower is better)
Translates to: DRHEDSNDEATDQHDKNARHSGS*GRGRFP
Trigger: AGGGAATCGCCCGCGTCCTCAACTCCCGCTATGCCT...GGCATTTTTGTCGTGCTGATCTGTGGCCTCATCATTGCTGTCTTCGTGGCGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR GCA 90 bp CCCAAGAGACCCTCTCCCTGGGGGCGTCTCATAGAAATTTCTGAGGTTTCTCCCCGTCCGCGACACCCTTaGTCAAGTCCACTAGGAGGC +
Preference number: 2 (lower is better)
Translates to: PKRPSPWGRLIEISEVSPRPRHP*SSPLGG
Trigger: GCCTCCTAGTGGACTTGAGCAAGGGTGTCGCGGACG...GGGAGAAACCTCAGAAATTTCTATGAGACGCCCCCAGGGAGAGGGTCTCTTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR GCA 90 bp GACCGCCACGAAGACAGCAATGATGAGGCCACAGATCAGCACGACAAAAATGCCATCTCCGAGCCCTGCTaGATGAAGCCACCCACGGGG +
Preference number: 2 (lower is better)
Translates to: DRHEDSNDEATDQHDKNAISEPC*MKPPTG
Trigger: CCCCGTGGGTGGCTTCATGCAGCAGGGCTCGGAGAT...GGCATTTTTGTCGTGCTGATCTGTGGCCTCATCATTGCTGTCTTCGTGGCGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp GATAGTGCCGTACTCAATGTTGGTCTGATCCGCCAGGTCGTCAGCCGACTCCACTTCCCTGACAAGGCCTaGAAGTTGGGCCGGCGCATA +
Preference number: 2 (lower is better)
Translates to: DSAVLNVGLIRQVVSRLHFPDKA*KLGRRI
Trigger: TATGCGCCGGCCCAACTTCCAGGCCTTGTCAGGGAA...GTGGAGTCGGCTGACGACCTGGCGGATCAGACCAACATTGAGTACGGCACTATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR TCA 90 bp CAGATGAACTCCATGACCGCCACGAAGACAGCAATGATGAGGCCACAGATCAGCGCTTGGAGAAGTCGATaGCCTTCTCCCTCTCGGCGG +
Preference number: 2 (lower is better)
Translates to: QMNSMTATKTAMMRPQISAWRSR*PSPSRR
Trigger: CCGCCGAGAGGGAGAAGGTCATCGACTTCTCCAAGC...GCTGATCTGTGGCCTCATCATTGCTGTCTTCGTGGCGGTCATGGAGTTCATCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp CCAGATGAACTCCATGACCGCCACGAAGACAGCAATGATGAGGCCACAGATCAGATCTCACGGTGGCCCTaGCGGGACTTCTCCAGGATG +
Preference number: 2 (lower is better)
Translates to: PDELHDRHEDSNDEATDQISRWP*RDFSRM
Trigger: CATCCTGGAGAAGTCCCGCCAGGGCCACCGTGAGAT...CTGATCTGTGGCCTCATCATTGCTGTCTTCGTGGCGGTCATGGAGTTCATCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR GCA 90 bp ACGACAAAAATGCCGCCAATGTTCTCCATGCCCAAACCTTTGGCCCTGTGGTCCAGAAGTAGCCAGGCTTaGGGCCCATGTGCACCCTGT +
Preference number: 2 (lower is better)
Translates to: TTKMPPMFSMPKPLALWSRSSQA*GPCAPC
Trigger: ACAGGGTGCACATGGGCCGCAAGCCTGGCTACTTCT...GGACCACAGGGCCAAAGGTTTGGGCATGGAGAACATTGGCGGCATTTTTGTCGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp GACCGCCACGAAGACAGCAATGATGAGGCCACAGATCAGCACGACAAAAATGCCGCTGCGCACAAACTCTaGGTAGAAGGGGTGGGAGGT +
Preference number: 2 (lower is better)
Translates to: DRHEDSNDEATDQHDKNAAAHKL*VEGVGG
Trigger: ACCTCCCACCCCTTCTACCCAGAGTTTGTGCGCAGC...GGCATTTTTGTCGTGCTGATCTGTGGCCTCATCATTGCTGTCTTCGTGGCGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR TCA 90 bp CGTGGACCAGATGAACTCCATGACCGCCACGAAGACAGCAATGATGAGGCCACAGACTTCACCAGGAATTaGAGGCAAAATCGCGGCGTC +
Preference number: 2 (lower is better)
Translates to: RGPDELHDRHEDSNDEATDFTRN*RQNRGV
Trigger: GACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTC...TGTGGCCTCATCATTGCTGTCTTCGTGGCGGTCATGGAGTTCATCTGGTCCACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR GCA 90 bp CCAGATGAACTCCATGACCGCCACGAAGACAGCAATGATGAGGCCACAGATCAGGCGCTTACCACCACGTaGACAGCGTCAAACATCAGG +
Preference number: 2 (lower is better)
Translates to: PDELHDRHEDSNDEATDQALTTT*TASNIR
Trigger: CCTGATGTTTGACGCTGTGCACGTGGTGGTAAGCGC...CTGATCTGTGGCCTCATCATTGCTGTCTTCGTGGCGGTCATGGAGTTCATCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp CCCAAGAGACCCTCTCCCTGGGGGCGTCTCATAGAAATTTCTGAGGTTTCTCCCCCACCTCCAGAAGTGTaGAGAGCCGTGTCAAGTCTT +
Preference number: 2 (lower is better)
Translates to: PKRPSPWGRLIEISEVSPPPPEV*RAVSSL
Trigger: AAGACTTGACACGGCTCTCCACACTTCTGGAGGTGG...GGGAGAAACCTCAGAAATTTCTATGAGACGCCCCCAGGGAGAGGGTCTCTTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CCA 90 bp GACCGCCACGAAGACAGCAATGATGAGGCCACAGATCAGCACGACAAAAATGCCATCCGCTGGTACGTCTaGTACCGCGAGTTCTGGAAG +
Preference number: 2 (lower is better)
Translates to: DRHEDSNDEATDQHDKNAIRWYV*YREFWK
Trigger: CTTCCAGAACTCGCGGTACCAGACGTACCAGCGGAT...GGCATTTTTGTCGTGCTGATCTGTGGCCTCATCATTGCTGTCTTCGTGGCGGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR TCA 90 bp TTCTCGGACAGCGCTTACCACCACGTGCACAGCGTCAAACATCAGGGCTGCGGAAGGGCTCAGCTTGGTTaGTCATCCATCAGAAAAGAA +
Preference number: 2 (lower is better)
Translates to: FSDSAYHHVHSVKHQGCGRAQLG*SSIRKE
Trigger: TTCTTTTCTGATGGATGATCAACCAAGCTGAGCCCT...TCCGCAGCCCTGATGTTTGACGCTGTGCACGTGGTGGTAAGCGCTGTCCGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
3UTR-3UTR GCA 90 bp CCCAAGAGACCCTCTCCCTGGGGGCGTCTCATAGAAATTTCTGAGGTTTCTCCCGAGGATTCGGGAGACTaGCAGGCTGACATCTTCATT +
Preference number: 2 (lower is better)
Translates to: PKRPSPWGRLIEISEVSPEDSGD*QADIFI
Trigger: AATGAAGATGTCAGCCTGGCAGTCTCCCGAATCCTC...GGGAGAAACCTCAGAAATTTCTATGAGACGCCCCCAGGGAGAGGGTCTCTTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000205328.2
3UTR-3UTR CCA 90 bp CAGATGAACTCCATGACCGCCACGAAGACAGCAATGATGAGGCCACAGATCAGCATGGTGGAGCCAGCGTaGATAGTGCCGTACTCAATG +
Preference number: 2 (lower is better)
Translates to: QMNSMTATKTAMMRPQISMVEPA*IVPYSM
Trigger: CATTGAGTACGGCACTATCCACGCTGGCTCCACCAT...GCTGATCTGTGGCCTCATCATTGCTGTCTTCGTGGCGGTCATGGAGTTCATCTG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR CAA 90 bp CGCATAACATACGGGTTCTCCAGGATAGTTGTGACCACCAGAGTCTaGTTGGCTAGAGTCTGTGACAGGTTGATGTCCAGGGTGGTGGCA +
Preference number: 2 (lower is better)
Translates to: RITYGFSRIVVTTRV*LARVCDRLMSRVVA
Trigger: TGCCACCACCCTGGACATCAACCTGTCACAGACTCTAGCCAACAAGACTCTGGTGGTCACAACTATCCTGGAGAACCCGTATGTTATGCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR GCA 90 bp CCAGATGAACTCCATGACCGCCACGAAGACAGCAATGATGAGGCCACAGATCAGGTACAGGCTGACAGATaGGAAGCGAAGGTACTGAAG +
Preference number: 2 (lower is better)
Translates to: PDELHDRHEDSNDEATDQVQADR*EAKVLK
Trigger: CTTCAGTACCTTCGCTTCGCATCTGTCAGCCTGTAC...CTGATCTGTGGCCTCATCATTGCTGTCTTCGTGGCGGTCATGGAGTTCATCTGG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205328.2
3UTR-3UTR CCA 90 bp GACCGCCACGAAGACAGCAATGATGAGGCCACAGATCAGCACGACAAAAATGCCTGCGTAGTGTGTAGTTaGTCCTCTGCCCTTTGCTGT +
Preference number: 2 (lower is better)
Translates to: DRHEDSNDEATDQHDKNACVVCS*SSALCC
Trigger: ACAGCAAAGGGCAGAGGACCAACTACACACTACGCA...GGCATTTTTGTCGTGCTGATCTGTGGCCTCATCATTGCTGTCTTCGTGGCGGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR TCA 90 bp CACGAAGACAGCAATGATGAGGCCACAGATCAGCACGACAAAAATGCCGCCAATGACTTCACCAGGAATTaGAGGCAAAATCGCGGCGTC +
Preference number: 2 (lower is better)
Translates to: HEDSNDEATDQHDKNAANDFTRN*RQNRGV
Trigger: GACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTC...ATTGGCGGCATTTTTGTCGTGCTGATCTGTGGCCTCATCATTGCTGTCTTCGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR CAA 90 bp ATAACATACGGGTTCTCCAGGATAGTTGTGACCACCAGAGTCTTGTaGGCTAGAGTCTGTGACAGGTTGATGTCCAGGGTGGTGGCATTC +
Preference number: 2 (lower is better)
Translates to: ITYGFSRIVVTTRVL*ARVCDRLMSRVVAF
Trigger: GAATGCCACCACCCTGGACATCAACCTGTCACAGACTCTAGCCAACAAGACTCTGGTGGTCACAACTATCCTGGAGAACCCGTATGTTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR TCA 90 bp CACGAAGACAGCAATGATGAGGCCACAGATCAGCACGACAAAAATGCCGCCAATGTACTTGTAAAACGCTaGGGTCATTCCCAGCTCCGA +
Preference number: 2 (lower is better)
Translates to: HEDSNDEATDQHDKNAANVLVKR*GHSQLR
Trigger: TCGGAGCTGGGAATGACCTCAGCGTTTTACAAGTAC...ATTGGCGGCATTTTTGTCGTGCTGATCTGTGGCCTCATCATTGCTGTCTTCGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR GCA 72 bp CCCCGGCCCCCGAAGCTCGCAGCGCCTGGATGCGCCTaGACTCCTGGCAGACGCGCACGTGCGTGCAGGGCG +
Preference number: 3 (lower is better)
Translates to: PRPPKLAAPGCA*TPGRRARACRA
Trigger: CGCCCTGCACGCACGTGCGCGTCTGCCAGGAGTGCAGGCGCATCCAGGCGCTGCGAGCTTCGGGGGCCGGGG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR CCA 72 bp CCCGAAGCTCGCAGCGCCTGGATGCGCCTGCACTCCTaGCAGACGCGCACGTGCGTGCAGGGCGTGGGAGCC +
Preference number: 3 (lower is better)
Translates to: PEARSAWMRLHS*QTRTCVQGVGA
Trigger: GGCTCCCACGCCCTGCACGCACGTGCGCGTCTGCCAGGAGTGCAGGCGCATCCAGGCGCTGCGAGCTTCGGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR TCA 72 bp CCCCGCCCGCGCCGGCCGAGTAGAGCTTGCCGTTGCTaGGTCGCATCTCGCGGACTGCGCGCAGCGACAGCA +
Preference number: 3 (lower is better)
Translates to: PRPRRPSRACRC*VASRGLRAATA
Trigger: TGCTGTCGCTGCGCGCAGTCCGCGAGATGCGACTCAGCAACGGCAAGCTCTACTCGGCCGGCGCGGGCGGGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR GCA 72 bp GTAGAGCTTGCCGTTGCTGAGTCGCATCTCGCGGACTaGGCGCAGCGACAGCAGGGCCCGGCTCGGGCCACC +
Preference number: 3 (lower is better)
Translates to: VELAVAESHLAD*AQRQQGPARAT
Trigger: GGTGGCCCGAGCCGGGCCCTGCTGTCGCTGCGCGCAGTCCGCGAGATGCGACTCAGCAACGGCAAGCTCTAC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp CAGGAGGTCCGGGGTCGTCCAGGAGGCGCTGCGGACCCCCGTGCGCGCCCGCGTTTGGTCCTCTGCCCTTaGCTGTTGAACTCAACCCGC +
Preference number: 3 (lower is better)
Translates to: QEVRGRPGGAADPRARPRLVLCP*LLNSTR
Trigger: GCGGGTTGAGTTCAACAGCAAAGGGCAGAGGACCAA...ACGCGGGCGCGCACGGGGGTCCGCAGCGCCTCCTGGACGACCCCGGACCTCCTG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp GCCCCCGAAGCTCGCAGCGCCTGGATGCGCCTGCACTCCTGGCAGACGCGCACGCCGATCTGGGTGAGGTaGCAATTGAGGCGCCTGTGG +
Preference number: 3 (lower is better)
Translates to: APEARSAWMRLHSWQTRTPIWVR*QLRRLW
Trigger: CCACAGGCGCCTCAATTGCAACCTCACCCAGATCGG...CGTGCGCGTCTGCCAGGAGTGCAGGCGCATCCAGGCGCTGCGAGCTTCGGGGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp GCCGTTGCTGAGTCGCATCTCGCGGACTGCGCGCAGCGACAGCAGGGCCCGGCTACGGACAGTGTCTCCTaGGAGATGAGGAAGCCTCGC +
Preference number: 3 (lower is better)
Translates to: AVAESHLADCAQRQQGPATDSVS*EMRKPR
Trigger: GCGAGGCTTCCTCATCTCCAAGGAGACACTGTCCGT...AGCCGGGCCCTGCTGTCGCTGCGCGCAGTCCGCGAGATGCGACTCAGCAACGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205328.2
3UTR CCA 72 bp CGTGTCAAGTCTTGGGGCATCTGGGCAGTCCCAGGTTaGGGTCCTCCCCGCGGACCGCTTTCCAACTCCGGG +
Preference number: 3 (lower is better)
Translates to: RVKSWGIWAVPG*GPPRGPLSNSG
Trigger: CCCGGAGTTGGAAAGCGGTCCGCGGGGAGGACCCCAACCTGGGACTGCCCAGATGCCCCAAGACTTGACACG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR CCA 72 bp CCATGCCCAAACCTTTGGCCCTGTGGTCCTCCTCCTTaGGGCACCGGCCGCCCTCCCACCACTTGCGCTTCA +
Preference number: 3 (lower is better)
Translates to: PCPNLWPCGPPP*GTGRPPTTCAS
Trigger: TGAAGCGCAAGTGGTGGGAGGGCGGCCGGTGCCCCAAGGAGGAGGACCACAGGGCCAAAGGTTTGGGCATGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR CCA 72 bp CGGCGGGAACGCGAGGTCTTTCGGCAAGACACGGCGTaGCGTAGCTCCTGCAGCATCTCCTGGCACACCGAC +
Preference number: 3 (lower is better)
Translates to: RREREVFRQDTA*RSSCSISWHTD
Trigger: GTCGGTGTGCCAGGAGATGCTGCAGGAGCTACGCCACGCCGTGTCTTGCCGAAAGACCTCGCGTTCCCGCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR CCA 72 bp CAAGACACGGCGTGGCGTAGCTCCTGCAGCATCTCCTaGCACACCGACACCTCCTCGGACTCCGCTGACCTC +
Preference number: 3 (lower is better)
Translates to: QDTAWRSSCSIS*HTDTSSDSADL
Trigger: GAGGTCAGCGGAGTCCGAGGAGGTGTCGGTGTGCCAGGAGATGCTGCAGGAGCTACGCCACGCCGTGTCTTG
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp CGTAGAGTCCGTCCTCTACCAACCGCAGGCGGTATCGGAAGCGCAGCAGCTCGGGAGCCGTGTCAAGTCTaGGGGCATCTGGGCAGTCCC +
Preference number: 3 (lower is better)
Translates to: RRVRPLPTAGGIGSAAAREPCQV*GHLGSP
Trigger: GGGACTGCCCAGATGCCCCAAGACTTGACACGGCTC...CCGAGCTGCTGCGCTTCCGATACCGCCTGCGGTTGGTAGAGGACGGACTCTACG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp CAACCGCAGGCGGTATCGGAAGCGCAGCAGCTCGGCCAGCTCCCTGAGCATGTCAGCAGGCACTCAGCCTaGGCGCAGATGAGGCTAGCT +
Preference number: 3 (lower is better)
Translates to: QPQAVSEAQQLGQLPEHVSRHSA*AQMRLA
Trigger: AGCTAGCCTCATCTGCGCCAAGGCTGAGTGCCTGCT...GACATGCTCAGGGAGCTGGCCGAGCTGCTGCGCTTCCGATACCGCCTGCGGTTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205328.2
3UTR TCA 72 bp CATCTCCTGGCACACCGACACCTCCTCGGACTCCGCTaGCCTCCGCGTGGACCAGATGAACTCCATGACCGC +
Preference number: 3 (lower is better)
Translates to: HLLAHRHLLGLR*PPRGPDELHDR
Trigger: GCGGTCATGGAGTTCATCTGGTCCACGCGGAGGTCAGCGGAGTCCGAGGAGGTGTCGGTGTGCCAGGAGATG
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR GCA 72 bp TCCAACCATGCCTGTCCAGGAACCGTTGGGCTCAGGTaGCCCGTAGAGTCCGTCCTCTACCAACCGCAGGCG +
Preference number: 3 (lower is better)
Translates to: SNHACPGTVGLR*PVESVLYQPQA
Trigger: CGCCTGCGGTTGGTAGAGGACGGACTCTACGGGGCACCTGAGCCCAACGGTTCCTGGACAGGCATGGTTGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR GCA 72 bp GAGGTCTTTCGGCAAGACACGGCGTGGCGTAGCTCCTaGAGCATCTCCTGGCACACCGACACCTCCTCGGAC +
Preference number: 3 (lower is better)
Translates to: EVFRQDTAWRSS*SISWHTDTSSD
Trigger: GTCCGAGGAGGTGTCGGTGTGCCAGGAGATGCTGCAGGAGCTACGCCACGCCGTGTCTTGCCGAAAGACCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp CACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCGTGTCAGAGCCGTGTCAAGTCTaGGGGCATCTGGGCAGTCCC +
Preference number: 3 (lower is better)
Translates to: HPHVQRPSPPPEVWRAVSEPCQV*GHLGSP
Trigger: GGGACTGCCCAGATGCCCCAAGACTTGACACGGCTC...TGACACGGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp GAGCTTGCCGTTGCTGAGTCGCATCTCGCGGACTGCGCGCAGCGACAGCAGGGCTCCCTCCAGGACATGTaGAGGCTGCGCACAAACTCT +
Preference number: 3 (lower is better)
Translates to: ELAVAESHLADCAQRQQGSLQDM*RLRTNS
Trigger: AGAGTTTGTGCGCAGCCTCAACATGTCCTGGAGGGA...GCCCTGCTGTCGCTGCGCGCAGTCCGCGAGATGCGACTCAGCAACGGCAAGCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp GAGGCGCAGGCCTGCTCCGGAGCCGGGCTCGGACTTCACCAGGAATTGAAGGCATGGGTGAGGTTGCAATaGAGGCGCCTGTGGTACTCG +
Preference number: 3 (lower is better)
Translates to: EAQACSGAGLGLHQELKAWVRLQ*RRLWYS
Trigger: CGAGTACCACAGGCGCCTCAATTGCAACCTCACCCA...TGCCTTCAATTCCTGGTGAAGTCCGAGCCCGGCTCCGGAGCAGGCCTGCGCCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp GCGAGGTCTTTCGGCAAGACACGGCGTGGCGTAGCTCCTGCAGCATCTCCTGGCGACAAGGCCTGGAAGTaGGGCCGGCGCATAACATAC +
Preference number: 3 (lower is better)
Translates to: ARSFGKTRRGVAPAASPGDKAWK*GRRITY
Trigger: GTATGTTATGCGCCGGCCCAACTTCCAGGCCTTGTC...GCCAGGAGATGCTGCAGGAGCTACGCCACGCCGTGTCTTGCCGAAAGACCTCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp TGTTGGTCTGATCCGCCAGGTCGTCAGCCGACTCCACCGGCACCTCCATGCGCTGACAAGGCCTGGAAGTaGGGCCGGCGCATAACATAC +
Preference number: 3 (lower is better)
Translates to: CWSDPPGRQPTPPAPPCADKAWK*GRRITY
Trigger: GTATGTTATGCGCCGGCCCAACTTCCAGGCCTTGTC...AGCGCATGGAGGTGCCGGTGGAGTCGGCTGACGACCTGGCGGATCAGACCAACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR TCA 72 bp GAGCCAGCGTGGATAGTGCCGTACTCAATGTTGGTCTaGTCCGCCAGGTCGTCAGCCGACTCCACCGGCACC +
Preference number: 3 (lower is better)
Translates to: EPAWIVPYSMLV*SARSSADSTGT
Trigger: GGTGCCGGTGGAGTCGGCTGACGACCTGGCGGATCAGACCAACATTGAGTACGGCACTATCCACGCTGGCTC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR CCA 72 bp CCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTaGAGAGCCGTGTCAAGTCTTGGGGCATCTGGGCAG +
Preference number: 3 (lower is better)
Translates to: PHVQRPSPPPEV*RAVSSLGASGQ
Trigger: CTGCCCAGATGCCCCAAGACTTGACACGGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp CGCGCCGGCCGAGTAGAGCTTGCCGTTGCTGAGTCGCATCTCGCGGACTGCGCGATGATGGTGGACACTTaGTCATCTCGGATCTCCTTG +
Preference number: 3 (lower is better)
Translates to: RAGRVELAVAESHLADCAMMVDT*SSRISL
Trigger: CAAGGAGATCCGAGATGACAAAGTGTCCACCATCAT...CGCGCAGTCCGCGAGATGCGACTCAGCAACGGCAAGCTCTACTCGGCCGGCGCG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205328.2
3UTR-3UTR CAA 90 bp GCGAGGTCTTTCGGCAAGACACGGCGTGGCGTAGCTCCTGCAGCATCTCCTGGCAAGGGGTGGGAGGTGTaGAACATGGAAAAGCCCAGG +
Preference number: 3 (lower is better)
Translates to: ARSFGKTRRGVAPAASPGKGWEV*NMEKPR
Trigger: CCTGGGCTTTTCCATGTTCAACACCTCCCACCCCTT...GCCAGGAGATGCTGCAGGAGCTACGCCACGCCGTGTCTTGCCGAAAGACCTCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR CCA 72 bp AGGGTCCGGTTAGAGTACCACACCCCTATCTCACGGTaGCCCTGGCGGGACTTCTCCAGGATGCGTAGTGTG +
Preference number: 3 (lower is better)
Translates to: RVRLEYHTPISR*PWRDFSRMRSV
Trigger: CACACTACGCATCCTGGAGAAGTCCCGCCAGGGCCACCGTGAGATAGGGGTGTGGTACTCTAACCGGACCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp TCCAACTCCGGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTGGACTTCACCAGGAATaGAAGGCAAAATCGCGGCGT +
Preference number: 3 (lower is better)
Translates to: SNSGSSPHSPWPLESSVSGLHQE*KAKSRR
Trigger: ACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTCC...AGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCCGGAGTTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp CATGGCCAGGGTCCGGTTAGAGTACCACACCCCTATCTCACGGTGGCCCTGGCGGGACTTCACCAGGAATaGAAGGCAAAATCGCGGCGT +
Preference number: 3 (lower is better)
Translates to: HGQGPVRVPHPYLTVALAGLHQE*KAKSRR
Trigger: ACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTCC...CGCCAGGGCCACCGTGAGATAGGGGTGTGGTACTCTAACCGGACCCTGGCCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp AGCGTGTACTGGTTCTCCAGGATATGGGGACGCGCCCGGAGACACGGGTGTGGGGAAAAGCCCAGGATGTaGGAGGAGTCCTCCACGATA +
Preference number: 3 (lower is better)
Translates to: SVYWFSRIWGRARRHGCGEKPRM*EESSTI
Trigger: TATCGTGGAGGACTCCTCCAACATCCTGGGCTTTTC...CCCACACCCGTGTCTCCGGGCGCGTCCCCATATCCTGGAGAACCAGTACACGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp GCCGTACTCAATGTTGGTCTGATCCGCCAGGTCGTCAGCCGACTCCACCGGCACAGAGTCTGTGACAGGTaGATGTCCAGGGTGGTGGCA +
Preference number: 3 (lower is better)
Translates to: AVLNVGLIRQVVSRLHRHRVCDR*MSRVVA
Trigger: TGCCACCACCCTGGACATCAACCTGTCACAGACTCT...GTGCCGGTGGAGTCGGCTGACGACCTGGCGGATCAGACCAACATTGAGTACGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR CCA 72 bp CAGAAGCCCTCGAAGCGCTCATTCCCTGACAAGGCCTaGAAGTTGGGCCGGCGCATAACATACGGGTTCTCC +
Preference number: 3 (lower is better)
Translates to: QKPSKRSFPDKA*KLGRRITYGFS
Trigger: GGAGAACCCGTATGTTATGCGCCGGCCCAACTTCCAGGCCTTGTCAGGGAATGAGCGCTTCGAGGGCTTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp CACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCGTGTCAGGACTTCACCAGGAATaGAAGGCAAAATCGCGGCGT +
Preference number: 3 (lower is better)
Translates to: HPHVQRPSPPPEVWRAVSGLHQE*KAKSRR
Trigger: ACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTCC...TGACACGGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp ACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCGTGTCTGGGAGATGGACGCATaGGCATCAATGATGATGGTG +
Preference number: 3 (lower is better)
Translates to: TPTCPEALPTSRSVESRVWEMDA*ASMMMV
Trigger: CACCATCATCATTGATGCCAATGCGTCCATCTCCCA...GACACGGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205328.2
3UTR TCA 72 bp CAGCAGGCACTCAGCCTTGGCGCAGATGAGGCTAGCTaGGGGGTAGTTAAAGGACTTGAGGATTCGGGAGAC +
Preference number: 3 (lower is better)
Translates to: QQALSLGADEAS*GVVKGLEDSGD
Trigger: GTCTCCCGAATCCTCAAGTCCTTTAACTACCCCTCAGCTAGCCTCATCTGCGCCAAGGCTGAGTGCCTGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000205328.2
3UTR-3UTR CAA 90 bp GACCGCCACGAAGACAGCAATGATGAGGCCACAGATCAGCACGACAAAAATGCCTGGGTGAGGTTGCAATaGAGGCGCCTGTGGTACTCG +
Preference number: 3 (lower is better)
Translates to: DRHEDSNDEATDQHDKNAWVRLQ*RRLWYS
Trigger: CGAGTACCACAGGCGCCTCAATTGCAACCTCACCCA...GGCATTTTTGTCGTGCTGATCTGTGGCCTCATCATTGCTGTCTTCGTGGCGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR TCA 72 bp TCATGGGCACTGCCAGTGTTTAGGGCTCAGCTTGGTTaGTCATCCATCAGAAAAGAACCCGGGTGCTGGGCC +
Preference number: 3 (lower is better)
Translates to: SWALPVFRAQLG*SSIRKEPGCWA
Trigger: GGCCCAGCACCCGGGTTCTTTTCTGATGGATGATCAACCAAGCTGAGCCCTAAACACTGGCAGTGCCCATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp CCAGATGAACTCCATGACCGCCACGAAGACAGCAATGATGAGGCCACAGATCAGAAGGGGTGGGAGGTGTaGAACATGGAAAAGCCCAGG +
Preference number: 3 (lower is better)
Translates to: PDELHDRHEDSNDEATDQKGWEV*NMEKPR
Trigger: CCTGGGCTTTTCCATGTTCAACACCTCCCACCCCTT...CTGATCTGTGGCCTCATCATTGCTGTCTTCGTGGCGGTCATGGAGTTCATCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR GCA 72 bp AGATCAGCACGACAAAAATGCCGCCAATGTTCTCCATaGCCAAACCTTTGGCCCTGTGGTCCTCCTCCTTGG +
Preference number: 3 (lower is better)
Translates to: RSARQKCRQCSP*PNLWPCGPPPW
Trigger: CCAAGGAGGAGGACCACAGGGCCAAAGGTTTGGGCATGGAGAACATTGGCGGCATTTTTGTCGTGCTGATCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR CCA 72 bp CTCCCTCCAGGACATGTTGAGGCTGCGCACAAACTCTaGGTAGAAGGGGTGGGAGGTGTTGAACATGGAAAA +
Preference number: 3 (lower is better)
Translates to: LPPGHVEAAHKL*VEGVGGVEHGK
Trigger: TTTTCCATGTTCAACACCTCCCACCCCTTCTACCCAGAGTTTGTGCGCAGCCTCAACATGTCCTGGAGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp CAGATGAACTCCATGACCGCCACGAAGACAGCAATGATGAGGCCACAGATCAGCGAAAAGCCCAGGATGTaGGAGGAGTCCTCCACGATA +
Preference number: 3 (lower is better)
Translates to: QMNSMTATKTAMMRPQISEKPRM*EESSTI
Trigger: TATCGTGGAGGACTCCTCCAACATCCTGGGCTTTTC...GCTGATCTGTGGCCTCATCATTGCTGTCTTCGTGGCGGTCATGGAGTTCATCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR-3UTR CAA 90 bp CAGATGAACTCCATGACCGCCACGAAGACAGCAATGATGAGGCCACAGATCAGCGTGACCACCAGAGTCTaGTTGGCTAGAGTCTGTGAC +
Preference number: 3 (lower is better)
Translates to: QMNSMTATKTAMMRPQISVTTRV*LARVCD
Trigger: GTCACAGACTCTAGCCAACAAGACTCTGGTGGTCAC...GCTGATCTGTGGCCTCATCATTGCTGTCTTCGTGGCGGTCATGGAGTTCATCTG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR GCA 72 bp AGGATGTTGGAGGAGTCCTCCACGATACCATCCAGATaGAGGATGGGAAAGTCCATGGTGGTGAGGATGTAC +
Preference number: 3 (lower is better)
Translates to: RMLEESSTIPSR*RMGKSMVVRMY
Trigger: GTACATCCTCACCACCATGGACTTTCCCATCCTGCATCTGGATGGTATCGTGGAGGACTCCTCCAACATCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR TCA 72 bp AAAGTCCATGGTGGTGAGGATGTACTTGTAAAACGCTaGGGTCATTCCCAGCTCCGAAGCCTTACGGAGGAC +
Preference number: 3 (lower is better)
Translates to: KVHGGEDVLVKR*GHSQLRSLTED
Trigger: GTCCTCCGTAAGGCTTCGGAGCTGGGAATGACCTCAGCGTTTTACAAGTACATCCTCACCACCATGGACTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205328.2
CDS-3UTR CCA 90 bp GGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTGCGCTCCTCTGTGGTCCTCCTCCTTaGGGCACCGGCCGCCCTCCC +
Preference number: 4 (lower is better)
Translates to: GSSPHSPWPLESSVSALLCGPPP*GTGRPP
Trigger: GGGAGGGCGGCCGGTGCCCCAAGGAGGAGGACCACA...GAGGAGCGCAGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp GGACTGGGATGTGGCAGGGGGAGGTATAGGGGCCCAAGAGACCCTCTCCCTGGGGCCGAGGCGGGCTGGTaGCTTCGGCTGGGGTGCCCA +
Preference number: 4 (lower is better)
Translates to: GLGCGRGRYRGPRDPLPGAEAGW*LRLGCP
Trigger: TGGGCACCCCAGCCGAAGCCACCAGCCCGCCTCGGC...CCCAGGGAGAGGGTCTCTTGGGCCCCTATACCTCCCCCTGCCACATCCCAGTCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp GCCCCCGAAGCTCGCAGCGCCTGGATGCGCCTGCACTCCTGGCAGACGCGCACGTCCGTGGTCTCGTACTaGCTGTCCCGCTGCAGCTCA +
Preference number: 4 (lower is better)
Translates to: APEARSAWMRLHSWQTRTSVVSY*LSRCSS
Trigger: TGAGCTGCAGCGGGACAGCCAGTACGAGACCACGGA...CGTGCGCGTCTGCCAGGAGTGCAGGCGCATCCAGGCGCTGCGAGCTTCGGGGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR GCA 90 bp GGACTGGGATGTGGCAGGGGGAGGTATAGGGGCCCAAGAGACCCTCTCCCTGGGTCGCATCTCGCGGACTaGGCGCAGCGACAGCAGGGC +
Preference number: 4 (lower is better)
Translates to: GLGCGRGRYRGPRDPLPGSHLAD*AQRQQG
Trigger: GCCCTGCTGTCGCTGCGCGCAGTCCGCGAGATGCGA...CCCAGGGAGAGGGTCTCTTGGGCCCCTATACCTCCCCCTGCCACATCCCAGTCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR GCA 90 bp AGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTGCGCTCCTCCCGTCCCTCGCAGCGCCTGGATaGGCCTGCACTCCTGGCAGA +
Preference number: 4 (lower is better)
Translates to: SPHSPWPLESSVSALLPSLAAPG*ACTPGR
Trigger: TCTGCCAGGAGTGCAGGCGCATCCAGGCGCTGCGAG...GGACGGGAGGAGCGCAGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp CGCGCCGGCCGAGTAGAGCTTGCCGTTGCTGAGTCGCATCTCGCGGACTGCGCGGGTGGAGGCAGAAGCTaGGCTGGAGGAGGGTCCCAA +
Preference number: 4 (lower is better)
Translates to: RAGRVELAVAESHLADCAGGGRS*AGGGSQ
Trigger: TTGGGACCCTCCTCCAGCCCAGCTTCTGCCTCCACC...CGCGCAGTCCGCGAGATGCGACTCAGCAACGGCAAGCTCTACTCGGCCGGCGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR TCA 90 bp GGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTGCGCTCCTCGCGAAGCGAAGGTACTaGAGGCGGGGCGTCTCCTCA +
Preference number: 4 (lower is better)
Translates to: GSSPHSPWPLESSVSALLAKRRY*RRGVSS
Trigger: TGAGGAGACGCCCCGCCTTCAGTACCTTCGCTTCGC...GAGGAGCGCAGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS-3UTR TCA 90 bp GAGGCGCAGGCCTGCTCCGGAGCCGGGCTCGGACTTCACCAGGAATTGAAGGCAGCTCGGCCAGCTCCCTaGGCATGTCCACGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: EAQACSGAGLGLHQELKAARPAP*ACPRRS
Trigger: GCTTCTGCGTGGACATGCTCAGGGAGCTGGCCGAGC...TGCCTTCAATTCCTGGTGAAGTCCGAGCCCGGCTCCGGAGCAGGCCTGCGCCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp CGTAGAGTCCGTCCTCTACCAACCGCAGGCGGTATCGGAAGCGCAGCAGCTCGGACACACCCACGCCCCTaGGGCCCCGCTCACTGGTGT +
Preference number: 4 (lower is better)
Translates to: RRVRPLPTAGGIGSAAARTHPRP*GPAHWC
Trigger: ACACCAGTGAGCGGGGCCTCAGGGGCGTGGGTGTGT...CCGAGCTGCTGCGCTTCCGATACCGCCTGCGGTTGGTAGAGGACGGACTCTACG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205328.2
CDS-3UTR GCA 90 bp GAGTCCTCGGTCTCTGCGCTCCTCCCGTCCACGGTGCGGGATAGAATGCGGGCGATCTCCGAGCCCTGCTaGATGAAGCCACCCACGGGG +
Preference number: 4 (lower is better)
Translates to: ESSVSALLPSTVRDRMRAISEPC*MKPPTG
Trigger: CCCCGTGGGTGGCTTCATGCAGCAGGGCTCGGAGAT...CGCCCGCATTCTATCCCGCACCGTGGACGGGAGGAGCGCAGAGACCGAGGACTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR GCA 90 bp TGTGGAGAGCCGTGTCAAGTCTTGGGGCATCTGGGCAGTCCCAGGTTGGGGTCCTGGCAGACGCGCACGTaGGTGCAGGGCGTGGGAGCC +
Preference number: 4 (lower is better)
Translates to: CGEPCQVLGHLGSPRLGSWQTRT*VQGVGA
Trigger: GGCTCCCACGCCCTGCACGCACGTGCGCGTCTGCCA...GGACCCCAACCTGGGACTGCCCAGATGCCCCAAGACTTGACACGGCTCTCCACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp GCCGTTGCTGAGTCGCATCTCGCGGACTGCGCGCAGCGACAGCAGGGCCCGGCTCCTGGCAGCTGGGATTaGCGAAGGCGACTATCAGCA +
Preference number: 4 (lower is better)
Translates to: AVAESHLADCAQRQQGPAPGSWD*RRRLSA
Trigger: TGCTGATAGTCGCCTTCGCCAATCCCAGCTGCCAGG...AGCCGGGCCCTGCTGTCGCTGCGCGCAGTCCGCGAGATGCGACTCAGCAACGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR CAA 72 bp TCCATGCCCAAACCTTTGGCCCTGTGGTCCTCCTCCTaGGGGCACCGGCCGCCCTCCCACCACTTGCGCTTC +
Preference number: 4 (lower is better)
Translates to: SMPKPLALWSSS*GHRPPSHHLRF
Trigger: GAAGCGCAAGTGGTGGGAGGGCGGCCGGTGCCCCAAGGAGGAGGACCACAGGGCCAAAGGTTTGGGCATGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR TCA 90 bp AGTCCTCGGTCTCTGCGCTCCTCCCGTCCACGGTGCGGGATAGAATGCGGGCGTGCGAAGCGAAGGTACTaGAGGCGGGGCGTCTCCTCA +
Preference number: 4 (lower is better)
Translates to: SPRSLRSSRPRCGIECGRAKRRY*RRGVSS
Trigger: TGAGGAGACGCCCCGCCTTCAGTACCTTCGCTTCGC...ACGCCCGCATTCTATCCCGCACCGTGGACGGGAGGAGCGCAGAGACCGAGGACT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS-3UTR TCA 90 bp GGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTGCGCTCCTCGCTTGGAGAAGTCGATaGCCTTCTCCCTCTCGGCGG +
Preference number: 4 (lower is better)
Translates to: GSSPHSPWPLESSVSALLAWRSR*PSPSRR
Trigger: CCGCCGAGAGGGAGAAGGTCATCGACTTCTCCAAGC...GAGGAGCGCAGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp GTGGAGAGCCGTGTCAAGTCTTGGGGCATCTGGGCAGTCCCAGGTTGGGGTCCTCCGAGCCCTGCTGCATaGAGCCACCCACGGGGAACC +
Preference number: 4 (lower is better)
Translates to: VESRVKSWGIWAVPGWGPPSPAA*SHPRGT
Trigger: GGTTCCCCGTGGGTGGCTTCATGCAGCAGGGCTCGG...AGGACCCCAACCTGGGACTGCCCAGATGCCCCAAGACTTGACACGGCTCTCCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp AGTCCTCGGTCTCTGCGCTCCTCCCGTCCACGGTGCGGGATAGAATGCGGGCGTAGGCATAGCGGGAGTTaGGGACGCGGGCGATTCCCT +
Preference number: 4 (lower is better)
Translates to: SPRSLRSSRPRCGIECGRRHSGS*GRGRFP
Trigger: AGGGAATCGCCCGCGTCCTCAACTCCCGCTATGCCT...ACGCCCGCATTCTATCCCGCACCGTGGACGGGAGGAGCGCAGAGACCGAGGACT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp CCAGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCTCCTCGGACTCCGCTaGCCTCCGCGTGGACCAGAT +
Preference number: 4 (lower is better)
Translates to: PGDTHMSRGPPHLQKCGELLGLR*PPRGPD
Trigger: ATCTGGTCCACGCGGAGGTCAGCGGAGTCCGAGGAG...CTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR GCA 90 bp AGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTGCGCTCCTCCCGTCCACAGCGTGTGGACAGTaGCCGCGGCATGATCTCCGA +
Preference number: 4 (lower is better)
Translates to: SPHSPWPLESSVSALLPSTACGQ*PRHDLR
Trigger: TCGGAGATCATGCCGCGGGCACTGTCCACACGCTGT...GGACGGGAGGAGCGCAGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR GCA 90 bp CCAGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGGGCACCTCCATGCGCTaGACCGTGAGGAAGGCAGCC +
Preference number: 4 (lower is better)
Translates to: PGDTHMSRGPPHLQKCGEGTSMR*TVRKAA
Trigger: GGCTGCCTTCCTCACGGTGCAGCGCATGGAGGTGCC...CTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR GCA 90 bp ATTGAAGGCAAAATCGCGGCGTCCTGTCCGTCTGGGGCGCATCGCGTCCCTGCAGCGCCTGGATGCGCCTaGACTCCTGGCAGACGCGCA +
Preference number: 4 (lower is better)
Translates to: IEGKIAASCPSGAHRVPAAPGCA*TPGRRA
Trigger: TGCGCGTCTGCCAGGAGTGCAGGCGCATCCAGGCGC...TGCAGGGACGCGATGCGCCCCAGACGGACAGGACGCCGCGATTTTGCCTTCAAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp CGCCGGCGGGAACGCGAGGTCTTTCGGCAAGACACGGCGTGGCGTAGCTCCTGCCCTGGCAGCTGGGATTaGCGAAGGCGACTATCAGCA +
Preference number: 4 (lower is better)
Translates to: RRREREVFRQDTAWRSSCPGSWD*RRRLSA
Trigger: TGCTGATAGTCGCCTTCGCCAATCCCAGCTGCCAGG...GCAGGAGCTACGCCACGCCGTGTCTTGCCGAAAGACCTCGCGTTCCCGCCGGCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp ATGCGCCTGCACTCCTGGCAGACGCGCACGTGCGTGCAGGGCGTGGGAGCCTGGAGTGATGACAGCACCTaGCAGCTGGGATTGGCGAAG +
Preference number: 4 (lower is better)
Translates to: MRLHSWQTRTCVQGVGAWSDDST*QLGLAK
Trigger: CTTCGCCAATCCCAGCTGCCAGGTGCTGTCATCACT...CCAGGCTCCCACGCCCTGCACGCACGTGCGCGTCTGCCAGGAGTGCAGGCGCAT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp AGTCCTCGGTCTCTGCGCTCCTCCCGTCCACGGTGCGGGATAGAATGCGGGCGTCGGCCACACACGGTCTaGTCGTCCAGGATTGCAGCC +
Preference number: 4 (lower is better)
Translates to: SPRSLRSSRPRCGIECGRRPHTV*SSRIAA
Trigger: GGCTGCAATCCTGGACGACCAGACCGTGTGTGGCCG...ACGCCCGCATTCTATCCCGCACCGTGGACGGGAGGAGCGCAGAGACCGAGGACT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR TCA 90 bp ACCAGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAACAGTGCCCGCGGCATaGTCTCCGAGCCCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: TRGHPHVQRPSPPPEVWRTVPAA*SPSPAA
Trigger: TGCAGCAGGGCTCGGAGATCATGCCGCGGGCACTGT...TCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCTGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp AGTCCTCGGTCTCTGCGCTCCTCCCGTCCACGGTGCGGGATAGAATGCGGGCGTAGAGCTTGCCGTTGCTaGGTCGCATCTCGCGGACTG +
Preference number: 4 (lower is better)
Translates to: SPRSLRSSRPRCGIECGRRACRC*VASRGL
Trigger: CAGTCCGCGAGATGCGACTCAGCAACGGCAAGCTCT...ACGCCCGCATTCTATCCCGCACCGTGGACGGGAGGAGCGCAGAGACCGAGGACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR GCA 90 bp AGCCGGGCTCGGACTTCACCAGGAATTGAAGGCAAAATCGCGGCGTCCTGTCCGGGGAGCCCAGCGGCATaGCGATGCCGTAGCCCTTGG +
Preference number: 4 (lower is better)
Translates to: SRARTSPGIEGKIAASCPGSPAA*RCRSPW
Trigger: CCAAGGGCTACGGCATCGGCATGCCGCTGGGCTCCC...CGGACAGGACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTCCGAGCCCGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp TTCCAACTCCGGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCGGTGGAGGCAGAAGCTaGGCTGGAGGAGGGTCCCAA +
Preference number: 4 (lower is better)
Translates to: FQLREQPPQSVALRVLGLGGGRS*AGGGSQ
Trigger: TTGGGACCCTCCTCCAGCCCAGCTTCTGCCTCCACC...GAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCCGGAGTTGGAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp CGTAGAGTCCGTCCTCTACCAACCGCAGGCGGTATCGGAAGCGCAGCAGCTCGGGGTGGAGGCAGAAGCTaGGCTGGAGGAGGGTCCCAA +
Preference number: 4 (lower is better)
Translates to: RRVRPLPTAGGIGSAAARGGGRS*AGGGSQ
Trigger: TTGGGACCCTCCTCCAGCCCAGCTTCTGCCTCCACC...CCGAGCTGCTGCGCTTCCGATACCGCCTGCGGTTGGTAGAGGACGGACTCTACG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp CCCGCCCGCGCCGGCCGAGTAGAGCTTGCCGTTGCTGAGTCGCATCTCGCGGACTTACGGAGGACAAGGTaGGAGATGGACGCATTGGCA +
Preference number: 4 (lower is better)
Translates to: PARAGRVELAVAESHLADLRRTR*EMDALA
Trigger: TGCCAATGCGTCCATCTCCCACCTTGTCCTCCGTAA...GTCCGCGAGATGCGACTCAGCAACGGCAAGCTCTACTCGGCCGGCGCGGGCGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp CAGGACTGGGATGTGGCAGGGGGAGGTATAGGGGCCCAAGAGACCCTCTCCCTGCGGCAAGACACGGCGTaGCGTAGCTCCTGCAGCATC +
Preference number: 4 (lower is better)
Translates to: QDWDVAGGGIGAQETLSLRQDTA*RSSCSI
Trigger: GATGCTGCAGGAGCTACGCCACGCCGTGTCTTGCCG...CAGGGAGAGGGTCTCTTGGGCCCCTATACCTCCCCCTGCCACATCCCAGTCCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp TGTGGAGAGCCGTGTCAAGTCTTGGGGCATCTGGGCAGTCCCAGGTTGGGGTCCATGCGCCTGCACTCCTaGCAGACGCGCACGTGCGTG +
Preference number: 4 (lower is better)
Translates to: CGEPCQVLGHLGSPRLGSMRLHS*QTRTCV
Trigger: CACGCACGTGCGCGTCTGCCAGGAGTGCAGGCGCAT...GGACCCCAACCTGGGACTGCCCAGATGCCCCAAGACTTGACACGGCTCTCCACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp AGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTGCGCTCCTCCCGTCCGGGAGACTGCCAGGCTaGCATCTTCATTACTGGGGT +
Preference number: 4 (lower is better)
Translates to: SPHSPWPLESSVSALLPSGRLPG*HLHYWG
Trigger: ACCCCAGTAATGAAGATGTCAGCCTGGCAGTCTCCC...GGACGGGAGGAGCGCAGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS-3UTR TCA 90 bp CCAGGAATTGAAGGCAAAATCGCGGCGTCCTGTCCGTCTGGGGCGCATCGCGTCCCCACCAGACTCCGCTaGCACAGCGTGTGGACAGTG +
Preference number: 4 (lower is better)
Translates to: PGIEGKIAASCPSGAHRVPTRLR*HSVWTV
Trigger: CACTGTCCACACGCTGTGTCAGCGGAGTCTGGTGGG...GACGCGATGCGCCCCAGACGGACAGGACGCCGCGATTTTGCCTTCAATTCCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp TTCCAACTCCGGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCGCAGGATGGCCAGTGTaGTCTCATCCCGGAAAGGGG +
Preference number: 4 (lower is better)
Translates to: FQLREQPPQSVALRVLGLAGWPV*SHPGKG
Trigger: CCCCTTTCCGGGATGAGATCACACTGGCCATCCTGC...GAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCCGGAGTTGGAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp GAGTCCTCGGTCTCTGCGCTCCTCCCGTCCACGGTGCGGGATAGAATGCGGGCGAGTGATGACAGCACCTaGCAGCTGGGATTGGCGAAG +
Preference number: 4 (lower is better)
Translates to: ESSVSALLPSTVRDRMRASDDST*QLGLAK
Trigger: CTTCGCCAATCCCAGCTGCCAGGTGCTGTCATCACT...CGCCCGCATTCTATCCCGCACCGTGGACGGGAGGAGCGCAGAGACCGAGGACTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp GAGCTTGCCGTTGCTGAGTCGCATCTCGCGGACTGCGCGCAGCGACAGCAGGGCAGTGATGACAGCACCTaGCAGCTGGGATTGGCGAAG +
Preference number: 4 (lower is better)
Translates to: ELAVAESHLADCAQRQQGSDDST*QLGLAK
Trigger: CTTCGCCAATCCCAGCTGCCAGGTGCTGTCATCACT...GCCCTGCTGTCGCTGCGCGCAGTCCGCGAGATGCGACTCAGCAACGGCAAGCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp CACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCGTGTCACGGCCACACACGGTCTaGTCGTCCAGGATTGCAGCC +
Preference number: 4 (lower is better)
Translates to: HPHVQRPSPPPEVWRAVSRPHTV*SSRIAA
Trigger: GGCTGCAATCCTGGACGACCAGACCGTGTGTGGCCG...TGACACGGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp GGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTGCGCTCCTCTGTCTACTTCCACTCTaGCCTTGGCTGGGACCTCGA +
Preference number: 4 (lower is better)
Translates to: GSSPHSPWPLESSVSALLCLLPL*PWLGPR
Trigger: TCGAGGTCCCAGCCAAGGCCAGAGTGGAAGTAGACA...GAGGAGCGCAGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp TCCAACTCCGGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTTGGTTCTCCAGGATATaGGGACGCGCCCGGAGACAC +
Preference number: 4 (lower is better)
Translates to: SNSGSSPHSPWPLESSVSWFSRI*GRARRH
Trigger: GTGTCTCCGGGCGCGTCCCCATATCCTGGAGAACCA...AGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCCGGAGTTGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp AGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCTCCTGCAGCATCTCCTaGCACACCGACACCTCCTCG +
Preference number: 4 (lower is better)
Translates to: RGHPHVQRPSPPPEVWRASCSIS*HTDTSS
Trigger: CGAGGAGGTGTCGGTGTGCCAGGAGATGCTGCAGGA...GGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp GAGGCGCAGGCCTGCTCCGGAGCCGGGCTCGGACTTCACCAGGAATTGAAGGCACCTCAGGACCCACCTTaGTGTGGGGAATCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: EAQACSGAGLGLHQELKAPQDPP*CGESPS
Trigger: AGAAGGAGATTCCCCACATCAAGGTGGGTCCTGAGG...TGCCTTCAATTCCTGGTGAAGTCCGAGCCCGGCTCCGGAGCAGGCCTGCGCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS-3UTR TCA 90 bp CGCTCATTCCCTGACAAGGCCTGGAAGTTGGGCCGGCGCATAACATACGGGTTCCCCTTGGGCAGGATCTaGCACACCCACGCCCCTGAG +
Preference number: 4 (lower is better)
Translates to: RSFPDKAWKLGRRITYGFPLGRI*HTHAPE
Trigger: CTCAGGGGCGTGGGTGTGTCAGATCCTGCCCAAGGG...GAACCCGTATGTTATGCGCCGGCCCAACTTCCAGGCCTTGTCAGGGAATGAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205328.2
CDS-3UTR GCA 90 bp TCCAACTCCGGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTCAGGGCCAGGATAGGTaGTGGCTTCACAGTTCTCCC +
Preference number: 4 (lower is better)
Translates to: SNSGSSPHSPWPLESSVSQGQDR*WLHSSP
Trigger: GGGAGAACTGTGAAGCCAGCACCTATCCTGGCCCTG...AGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCCGGAGTTGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp CCAGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCTGGCAGCTGGGATTaGCGAAGGCGACTATCAGCA +
Preference number: 4 (lower is better)
Translates to: PGDTHMSRGPPHLQKCGEPGSWD*RRRLSA
Trigger: TGCTGATAGTCGCCTTCGCCAATCCCAGCTGCCAGG...CTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp AGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCACAGCACCTGGCAGCTaGGATTGGCGAAGGCGACTA +
Preference number: 4 (lower is better)
Translates to: RGHPHVQRPSPPPEVWRATAPGS*DWRRRL
Trigger: TAGTCGCCTTCGCCAATCCCAGCTGCCAGGTGCTGT...GGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp CACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCGTGTCATCCGTGGTCTCGTACTaGCTGTCCCGCTGCAGCTCA +
Preference number: 4 (lower is better)
Translates to: HPHVQRPSPPPEVWRAVSSVVSY*LSRCSS
Trigger: TGAGCTGCAGCGGGACAGCCAGTACGAGACCACGGA...TGACACGGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp TTCCAACTCCGGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCGACACATGGTGTCCGTaGTCTCGTACTGGCTGTCCC +
Preference number: 4 (lower is better)
Translates to: FQLREQPPQSVALRVLGLDTWCP*SRTGCP
Trigger: GGGACAGCCAGTACGAGACCACGGACACCATGTGTC...GAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCCGGAGTTGGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp GCGAGGTCTTTCGGCAAGACACGGCGTGGCGTAGCTCCTGCAGCATCTCCTGGCGACACATGGTGTCCGTaGTCTCGTACTGGCTGTCCC +
Preference number: 4 (lower is better)
Translates to: ARSFGKTRRGVAPAASPGDTWCP*SRTGCP
Trigger: GGGACAGCCAGTACGAGACCACGGACACCATGTGTC...GCCAGGAGATGCTGCAGGAGCTACGCCACGCCGTGTCTTGCCGAAAGACCTCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp AACCGTTGGGCTCAGGTGCCCCGTAGAGTCCGTCCTCTACCAACCGCAGGCGGTAGATATGGCTCACGGTaGAGGCAGAAGCTGGGCTGG +
Preference number: 4 (lower is better)
Translates to: NRWAQVPRRVRPLPTAGGRYGSR*RQKLGW
Trigger: CCAGCCCAGCTTCTGCCTCCACCGTGAGCCATATCT...ACCGCCTGCGGTTGGTAGAGGACGGACTCTACGGGGCACCTGAGCCCAACGGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp GTGGAGAGCCGTGTCAAGTCTTGGGGCATCTGGGCAGTCCCAGGTTGGGGTCCTATCTCACGGTGGCCCTaGCGGGACTTCTCCAGGATG +
Preference number: 4 (lower is better)
Translates to: VESRVKSWGIWAVPGWGPISRWP*RDFSRM
Trigger: CATCCTGGAGAAGTCCCGCCAGGGCCACCGTGAGAT...AGGACCCCAACCTGGGACTGCCCAGATGCCCCAAGACTTGACACGGCTCTCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp AGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTGCGCTCCTCCCGTCCATGGTGGAGCCAGCGTaGATAGTGCCGTACTCAATG +
Preference number: 4 (lower is better)
Translates to: SPHSPWPLESSVSALLPSMVEPA*IVPYSM
Trigger: CATTGAGTACGGCACTATCCACGCTGGCTCCACCAT...GGACGGGAGGAGCGCAGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp TCCAACTCCGGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTTACTGGGGTACAGGCTaGCAGATGCGAAGCGAAGGT +
Preference number: 4 (lower is better)
Translates to: SNSGSSPHSPWPLESSVSYWGTG*QMRSEG
Trigger: ACCTTCGCTTCGCATCTGTCAGCCTGTACCCCAGTA...AGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCCGGAGTTGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS-3UTR TCA 90 bp ACCAGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGACCCTCCAGGACATGTTaGGGCTGCGCACAAACTCTG +
Preference number: 4 (lower is better)
Translates to: TRGHPHVQRPSPPPEVWRPSRTC*GCAQTL
Trigger: CAGAGTTTGTGCGCAGCCTCAACATGTCCTGGAGGG...TCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCTGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp AGCCGGGCTCGGACTTCACCAGGAATTGAAGGCAAAATCGCGGCGTCCTGTCCGTGCAGGCCAGTGGCTTaGCGCCAATCTCCTGGCTTC +
Preference number: 4 (lower is better)
Translates to: SRARTSPGIEGKIAASCPCRPVA*RQSPGF
Trigger: GAAGCCAGGAGATTGGCGTCAAGCCACTGGCCTGCA...CGGACAGGACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTCCGAGCCCGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp CCAGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGGAGTCTGTGACAGGTTaGTGTCCAGGGTGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: PGDTHMSRGPPHLQKCGEESVTG*CPGWWH
Trigger: ATGCCACCACCCTGGACATCAACCTGTCACAGACTC...CTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp CACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCGTGTCAGAAGCGCTCATTCCCTaGCAAGGCCTGGAAGTTGGG +
Preference number: 4 (lower is better)
Translates to: HPHVQRPSPPPEVWRAVSEALIP*QGLEVG
Trigger: CCCAACTTCCAGGCCTTGTCAGGGAATGAGCGCTTC...TGACACGGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR GCA 90 bp GGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTGCGCTCCTCGTACAGGCTGACAGATaGGAAGCGAAGGTACTGAAG +
Preference number: 4 (lower is better)
Translates to: GSSPHSPWPLESSVSALLVQADR*EAKVLK
Trigger: CTTCAGTACCTTCGCTTCGCATCTGTCAGCCTGTAC...GAGGAGCGCAGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS-3UTR GCA 90 bp ACCAGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGGTGATGGTGAAGGCTaGCACAGCCAGGTCTGCCTT +
Preference number: 4 (lower is better)
Translates to: TRGHPHVQRPSPPPEVWRGDGEG*HSQVCL
Trigger: AAGGCAGACCTGGCTGTGGCAGCCTTCACCATCACC...TCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCTGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR GCA 90 bp ACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCGTGTCAGAAGTAGCCAGGCTTaGGGCCCATGTGCACCCTGT +
Preference number: 4 (lower is better)
Translates to: TPTCPEALPTSRSVESRVRSSQA*GPCAPC
Trigger: ACAGGGTGCACATGGGCCGCAAGCCTGGCTACTTCT...GACACGGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR GCA 90 bp GCTCGGACTTCACCAGGAATTGAAGGCAAAATCGCGGCGTCCTGTCCGTCTGGGGCGTGGCGTAGCTCCTaGAGCATCTCCTGGCACACC +
Preference number: 4 (lower is better)
Translates to: ARTSPGIEGKIAASCPSGAWRSS*SISWHT
Trigger: GGTGTGCCAGGAGATGCTGCAGGAGCTACGCCACGC...CCCAGACGGACAGGACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTCCGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp CACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCGTGTCAACAGCACCTGGCAGCTaGGATTGGCGAAGGCGACTA +
Preference number: 4 (lower is better)
Translates to: HPHVQRPSPPPEVWRAVSTAPGS*DWRRRL
Trigger: TAGTCGCCTTCGCCAATCCCAGCTGCCAGGTGCTGT...TGACACGGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp CGCTCATTCCCTGACAAGGCCTGGAAGTTGGGCCGGCGCATAACATACGGGTTCCGGCCACACACGGTCTaGTCGTCCAGGATTGCAGCC +
Preference number: 4 (lower is better)
Translates to: RSFPDKAWKLGRRITYGFRPHTV*SSRIAA
Trigger: GGCTGCAATCCTGGACGACCAGACCGTGTGTGGCCG...GAACCCGTATGTTATGCGCCGGCCCAACTTCCAGGCCTTGTCAGGGAATGAGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp GGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTGCGCTCCTCAAAAGCCCAGGATGTTaGAGGAGTCCTCCACGATAC +
Preference number: 4 (lower is better)
Translates to: GSSPHSPWPLESSVSALLKSPGC*RSPPRY
Trigger: GTATCGTGGAGGACTCCTCCAACATCCTGGGCTTTT...GAGGAGCGCAGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp ATTGAAGGCAAAATCGCGGCGTCCTGTCCGTCTGGGGCGCATCGCGTCCCTGCAGCTGCGCACAAACTCTaGGTAGAAGGGGTGGGAGGT +
Preference number: 4 (lower is better)
Translates to: IEGKIAASCPSGAHRVPAAAHKL*VEGVGG
Trigger: ACCTCCCACCCCTTCTACCCAGAGTTTGTGCGCAGC...TGCAGGGACGCGATGCGCCCCAGACGGACAGGACGCCGCGATTTTGCCTTCAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp ACCAGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGGCCAGGATAGGTGCTaGCTTCACAGTTCTCCCTCC +
Preference number: 4 (lower is better)
Translates to: TRGHPHVQRPSPPPEVWRGQDRC*LHSSPS
Trigger: GGAGGGAGAACTGTGAAGCCAGCACCTATCCTGGCC...TCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCTGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp CCAGGAATTGAAGGCAAAATCGCGGCGTCCTGTCCGTCTGGGGCGCATCGCGTCCATGGGGCCAAATGTTaGCCGAAGTGCAGGCCAGTG +
Preference number: 4 (lower is better)
Translates to: PGIEGKIAASCPSGAHRVHGAKC*PKCRPV
Trigger: CACTGGCCTGCACTTCGGCCAACATTTGGCCCCATG...GACGCGATGCGCCCCAGACGGACAGGACGCCGCGATTTTGCCTTCAATTCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp ATTGAAGGCAAAATCGCGGCGTCCTGTCCGTCTGGGGCGCATCGCGTCCCTGCATTCCCTGACAAGGCCTaGAAGTTGGGCCGGCGCATA +
Preference number: 4 (lower is better)
Translates to: IEGKIAASCPSGAHRVPAFPDKA*KLGRRI
Trigger: TATGCGCCGGCCCAACTTCCAGGCCTTGTCAGGGAA...TGCAGGGACGCGATGCGCCCCAGACGGACAGGACGCCGCGATTTTGCCTTCAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp TCCAACTCCGGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTCATAAGGGCTCAGCCTaGCAGCCAGGAACAAGACAC +
Preference number: 4 (lower is better)
Translates to: SNSGSSPHSPWPLESSVSHKGSA*QPGTRH
Trigger: GTGTCTTGTTCCTGGCTGCCAGGCTGAGCCCTTATG...AGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCCGGAGTTGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp TCCAACTCCGGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTATCCGCTGGTACGTCTaGTACCGCGAGTTCTGGAAG +
Preference number: 4 (lower is better)
Translates to: SNSGSSPHSPWPLESSVSIRWYV*YREFWK
Trigger: CTTCCAGAACTCGCGGTACCAGACGTACCAGCGGAT...AGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCCGGAGTTGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp ATTGAAGGCAAAATCGCGGCGTCCTGTCCGTCTGGGGCGCATCGCGTCCCTGCAGTGTCTCCTTGGAGATaGGGAAGCCTCGCACCAGTT +
Preference number: 4 (lower is better)
Translates to: IEGKIAASCPSGAHRVPAVSPWR*GSLAPV
Trigger: AACTGGTGCGAGGCTTCCTCATCTCCAAGGAGACAC...TGCAGGGACGCGATGCGCCCCAGACGGACAGGACGCCGCGATTTTGCCTTCAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS-3UTR TCA 90 bp AGCCGGGCTCGGACTTCACCAGGAATTGAAGGCAAAATCGCGGCGTCCTGTCCGTCTGCCCTTTGCTGTTaGACTCAACCCGCCCGGTCA +
Preference number: 4 (lower is better)
Translates to: SRARTSPGIEGKIAASCPSALCC*TQPARS
Trigger: TGACCGGGCGGGTTGAGTTCAACAGCAAAGGGCAGA...CGGACAGGACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTCCGAGCCCGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp TTCCAACTCCGGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCGGAACAAGACACAGCTaGCAGCCAGGTAGGCAAGAA +
Preference number: 4 (lower is better)
Translates to: FQLREQPPQSVALRVLGLGTRHS*QPGRQE
Trigger: TTCTTGCCTACCTGGCTGTCAGCTGTGTCTTGTTCC...GAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCCGGAGTTGGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp CGCCGGCGGGAACGCGAGGTCTTTCGGCAAGACACGGCGTGGCGTAGCTCCTGCAGATCTTGGCTCAAATaGGGTGGAATGGCTAAGGAT +
Preference number: 4 (lower is better)
Translates to: RRREREVFRQDTAWRSSCRSWLK*GGMAKD
Trigger: ATCCTTAGCCATTCCACCTCATTTGAGCCAAGATCT...GCAGGAGCTACGCCACGCCGTGTCTTGCCGAAAGACCTCGCGTTCCCGCCGGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
CDS-3UTR GCA 90 bp GGACTGGGATGTGGCAGGGGGAGGTATAGGGGCCCAAGAGACCCTCTCCCTGGGGAGGATTCGGGAGACTaGCAGGCTGACATCTTCATT +
Preference number: 4 (lower is better)
Translates to: GLGCGRGRYRGPRDPLPGEDSGD*QADIFI
Trigger: AATGAAGATGTCAGCCTGGCAGTCTCCCGAATCCTC...CCCAGGGAGAGGGTCTCTTGGGCCCCTATACCTCCCCCTGCCACATCCCAGTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS-3UTR GCA 90 bp GTGGAGAGCCGTGTCAAGTCTTGGGGCATCTGGGCAGTCCCAGGTTGGGGTCCTGCGCTTACCACCACGTaGACAGCGTCAAACATCAGG +
Preference number: 4 (lower is better)
Translates to: VESRVKSWGIWAVPGWGPALTTT*TASNIR
Trigger: CCTGATGTTTGACGCTGTGCACGTGGTGGTAAGCGC...AGGACCCCAACCTGGGACTGCCCAGATGCCCCAAGACTTGACACGGCTCTCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR GCA 90 bp AGCCGGGCTCGGACTTCACCAGGAATTGAAGGCAAAATCGCGGCGTCCTGTCCGATGATCTCCGAGCCCTaGTGCATGAAGCCACCCACG +
Preference number: 4 (lower is better)
Translates to: SRARTSPGIEGKIAASCPMISEP*CMKPPT
Trigger: CGTGGGTGGCTTCATGCAGCAGGGCTCGGAGATCAT...CGGACAGGACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTCCGAGCCCGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp GCTCGGACTTCACCAGGAATTGAAGGCAAAATCGCGGCGTCCTGTCCGTCTGGGTCCGTGGTCTCGTACTaGCTGTCCCGCTGCAGCTCA +
Preference number: 4 (lower is better)
Translates to: ARTSPGIEGKIAASCPSGSVVSY*LSRCSS
Trigger: TGAGCTGCAGCGGGACAGCCAGTACGAGACCACGGA...CCCAGACGGACAGGACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTCCGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp AGCCGGGCTCGGACTTCACCAGGAATTGAAGGCAAAATCGCGGCGTCCTGTCCGAGATATGGCTCACGGTaGAGGCAGAAGCTGGGCTGG +
Preference number: 4 (lower is better)
Translates to: SRARTSPGIEGKIAASCPRYGSR*RQKLGW
Trigger: CCAGCCCAGCTTCTGCCTCCACCGTGAGCCATATCT...CGGACAGGACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTCCGAGCCCGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp CAGGACTGGGATGTGGCAGGGGGAGGTATAGGGGCCCAAGAGACCCTCTCCCTGTTGACGCCAATCTCCTaGCTTCGGTTCAGTTCTCGG +
Preference number: 4 (lower is better)
Translates to: QDWDVAGGGIGAQETLSLLTPIS*LRFSSR
Trigger: CCGAGAACTGAACCGAAGCCAGGAGATTGGCGTCAA...CAGGGAGAGGGTCTCTTGGGCCCCTATACCTCCCCCTGCCACATCCCAGTCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp AGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCTTGCCCAGCGTGTACTaGTTCTCCAGGATATGGGGA +
Preference number: 4 (lower is better)
Translates to: RGHPHVQRPSPPPEVWRALPSVY*FSRIWG
Trigger: TCCCCATATCCTGGAGAACCAGTACACGCTGGGCAA...GGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp AGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCTGGTACCGCGAGTTCTaGAAGAAGGTCATGGTGGAG +
Preference number: 4 (lower is better)
Translates to: RGHPHVQRPSPPPEVWRAWYREF*KKVMVE
Trigger: CTCCACCATGACCTTCTTCCAGAACTCGCGGTACCA...GGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp CAGGACTGGGATGTGGCAGGGGGAGGTATAGGGGCCCAAGAGACCCTCTCCCTGGTACTTGTAAAACGCTaGGGTCATTCCCAGCTCCGA +
Preference number: 4 (lower is better)
Translates to: QDWDVAGGGIGAQETLSLVLVKR*GHSQLR
Trigger: TCGGAGCTGGGAATGACCTCAGCGTTTTACAAGTAC...CAGGGAGAGGGTCTCTTGGGCCCCTATACCTCCCCCTGCCACATCCCAGTCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR GCA 90 bp TCCAACTCCGGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTTACTGGCTGTCCCGCTaGAGCTCAAAGATGTCTACT +
Preference number: 4 (lower is better)
Translates to: SNSGSSPHSPWPLESSVSYWLSR*SSKMST
Trigger: AGTAGACATCTTTGAGCTGCAGCGGGACAGCCAGTA...AGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCCGGAGTTGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR GCA 90 bp AGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCGTACAGGCTGACAGATaGGAAGCGAAGGTACTGAAG +
Preference number: 4 (lower is better)
Translates to: RGHPHVQRPSPPPEVWRAVQADR*EAKVLK
Trigger: CTTCAGTACCTTCGCTTCGCATCTGTCAGCCTGTAC...GGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS-3UTR GCA 90 bp TGTGGAGAGCCGTGTCAAGTCTTGGGGCATCTGGGCAGTCCCAGGTTGGGGTCCGGGACTTCTCCAGGATaGGTAGTGTGTAGTTGGTCC +
Preference number: 4 (lower is better)
Translates to: CGEPCQVLGHLGSPRLGSGTSPG*VVCSWS
Trigger: GGACCAACTACACACTACGCATCCTGGAGAAGTCCC...GGACCCCAACCTGGGACTGCCCAGATGCCCCAAGACTTGACACGGCTCTCCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp AGCCGGGCTCGGACTTCACCAGGAATTGAAGGCAAAATCGCGGCGTCCTGTCCGTGTCTACTTCCACTCTaGCCTTGGCTGGGACCTCGA +
Preference number: 4 (lower is better)
Translates to: SRARTSPGIEGKIAASCPCLLPL*PWLGPR
Trigger: TCGAGGTCCCAGCCAAGGCCAGAGTGGAAGTAGACA...CGGACAGGACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTCCGAGCCCGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp ACCAGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCAGGATCTGACACATaGTGTCCGTGGTCTCGTACT +
Preference number: 4 (lower is better)
Translates to: TRGHPHVQRPSPPPEVWRAGSDT*CPWSRT
Trigger: AGTACGAGACCACGGACACCATGTGTCAGATCCTGC...TCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCTGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp GCTCGGACTTCACCAGGAATTGAAGGCAAAATCGCGGCGTCCTGTCCGTCTGGGAGATATGGCTCACGGTaGAGGCAGAAGCTGGGCTGG +
Preference number: 4 (lower is better)
Translates to: ARTSPGIEGKIAASCPSGRYGSR*RQKLGW
Trigger: CCAGCCCAGCTTCTGCCTCCACCGTGAGCCATATCT...CCCAGACGGACAGGACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTCCGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp AGCCGGGCTCGGACTTCACCAGGAATTGAAGGCAAAATCGCGGCGTCCTGTCCGGGACCCACCTTGATGTaGGGAATCTCCTTCTCCCCA +
Preference number: 4 (lower is better)
Translates to: SRARTSPGIEGKIAASCPGPTLM*GISFSP
Trigger: TGGGGAGAAGGAGATTCCCCACATCAAGGTGGGTCC...CGGACAGGACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTCCGAGCCCGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp CACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCGTGTCATTACGGAGGACAAGGTaGGAGATGGACGCATTGGCA +
Preference number: 4 (lower is better)
Translates to: HPHVQRPSPPPEVWRAVSLRRTR*EMDALA
Trigger: TGCCAATGCGTCCATCTCCCACCTTGTCCTCCGTAA...TGACACGGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp CCAGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGTGCGTAGTGTGTAGTTaGTCCTCTGCCCTTTGCTGT +
Preference number: 4 (lower is better)
Translates to: PGDTHMSRGPPHLQKCGECVVCS*SSALCC
Trigger: ACAGCAAAGGGCAGAGGACCAACTACACACTACGCA...CTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp ACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCGTGTCCAATTGAGGCGCCTGTaGTACTCGTTCATGGTGGAC +
Preference number: 4 (lower is better)
Translates to: TPTCPEALPTSRSVESRVQLRRL*YSFMVD
Trigger: GTCCACCATGAACGAGTACCACAGGCGCCTCAATTG...GACACGGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp GGCCAAATGTTGGCCGAAGTGCAGGCCAGTGGCTTGACGCCAATCTCCTGGCTTCCTCAGGACCCACCTTaGTGTGGGGAATCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: GQMLAEVQASGLTPISWLPQDPP*CGESPS
Trigger: AGAAGGAGATTCCCCACATCAAGGTGGGTCCTGAGG...AAGCCAGGAGATTGGCGTCAAGCCACTGGCCTGCACTTCGGCCAACATTTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
CDS-3UTR TCA 90 bp CACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCGTGTCAGCAGATGAGGCTAGCTaGGGGGTAGTTAAAGGACTT +
Preference number: 4 (lower is better)
Translates to: HPHVQRPSPPPEVWRAVSADEAS*GVVKGL
Trigger: AAGTCCTTTAACTACCCCTCAGCTAGCCTCATCTGC...TGACACGGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS-3UTR TCA 90 bp GGACTGGGATGTGGCAGGGGGAGGTATAGGGGCCCAAGAGACCCTCTCCCTGGGGAAAGTCCATGGTGGTaGGGATGTACTTGTAAAACG +
Preference number: 4 (lower is better)
Translates to: GLGCGRGRYRGPRDPLPGESPWW*GCTCKT
Trigger: CGTTTTACAAGTACATCCTCACCACCATGGACTTTC...CCCAGGGAGAGGGTCTCTTGGGCCCCTATACCTCCCCCTGCCACATCCCAGTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp CCCAAGAGACCCTCTCCCTGGGGGCGTCTCATAGAAATTTCTGAGGTTTCTCCCGGTAGGCAAGAAGCATaGAGAGCCACACGGCAGGGG +
Preference number: 4 (lower is better)
Translates to: PKRPSPWGRLIEISEVSPGRQEA*RATRQG
Trigger: CCCCTGCCGTGTGGCTCTTCATGCTTCTTGCCTACC...GGGAGAAACCTCAGAAATTTCTATGAGACGCCCCCAGGGAGAGGGTCTCTTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR GCA 90 bp CAGGGTCCGGTTAGAGTACCACACCCCTATCTCACGGTGGCCCTGGCGGGACTTTACTGGCTGTCCCGCTaGAGCTCAAAGATGTCTACT +
Preference number: 4 (lower is better)
Translates to: QGPVRVPHPYLTVALAGLYWLSR*SSKMST
Trigger: AGTAGACATCTTTGAGCTGCAGCGGGACAGCCAGTA...AAGTCCCGCCAGGGCCACCGTGAGATAGGGGTGTGGTACTCTAACCGGACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR GCA 90 bp TTCCAACTCCGGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTCAGCACGACAAAAATaGCGCCAATGTTCTCCATGC +
Preference number: 4 (lower is better)
Translates to: FQLREQPPQSVALRVLGLSARQK*RQCSPC
Trigger: GCATGGAGAACATTGGCGGCATTTTTGTCGTGCTGA...GAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCCGGAGTTGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR TCA 90 bp ACAGCGCTTACCACCACGTGCACAGCGTCAAACATCAGGGCTGCGGACAGCGCAGCAGATGAGGCTAGCTaGGGGGTAGTTAAAGGACTT +
Preference number: 4 (lower is better)
Translates to: TALTTTCTASNIRAADSAADEAS*GVVKGL
Trigger: AAGTCCTTTAACTACCCCTCAGCTAGCCTCATCTGC...TGCGCTGTCCGCAGCCCTGATGTTTGACGCTGTGCACGTGGTGGTAAGCGCTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp GGCCAAATGTTGGCCGAAGTGCAGGCCAGTGGCTTGACGCCAATCTCCTGGCTTGCAGGATCTGACACATaGTGTCCGTGGTCTCGTACT +
Preference number: 4 (lower is better)
Translates to: GQMLAEVQASGLTPISWLAGSDT*CPWSRT
Trigger: AGTACGAGACCACGGACACCATGTGTCAGATCCTGC...AAGCCAGGAGATTGGCGTCAAGCCACTGGCCTGCACTTCGGCCAACATTTGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp CCCAAGAGACCCTCTCCCTGGGGGCGTCTCATAGAAATTTCTGAGGTTTCTCCCCCATGCCCAAACCTTTaGCCCTGTGGTCCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: PKRPSPWGRLIEISEVSPPCPNL*PCGPPP
Trigger: AGGAGGAGGACCACAGGGCCAAAGGTTTGGGCATGG...GGGAGAAACCTCAGAAATTTCTATGAGACGCCCCCAGGGAGAGGGTCTCTTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR GCA 90 bp GCTCGGACTTCACCAGGAATTGAAGGCAAAATCGCGGCGTCCTGTCCGTCTGGGTACTGGCTGTCCCGCTaGAGCTCAAAGATGTCTACT +
Preference number: 4 (lower is better)
Translates to: ARTSPGIEGKIAASCPSGYWLSR*SSKMST
Trigger: AGTAGACATCTTTGAGCTGCAGCGGGACAGCCAGTA...CCCAGACGGACAGGACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTCCGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp CCCAAGAGACCCTCTCCCTGGGGGCGTCTCATAGAAATTTCTGAGGTTTCTCCCGGACCCACCTTGATGTaGGGAATCTCCTTCTCCCCA +
Preference number: 4 (lower is better)
Translates to: PKRPSPWGRLIEISEVSPGPTLM*GISFSP
Trigger: TGGGGAGAAGGAGATTCCCCACATCAAGGTGGGTCC...GGGAGAAACCTCAGAAATTTCTATGAGACGCCCCCAGGGAGAGGGTCTCTTGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp CAGGGTCCGGTTAGAGTACCACACCCCTATCTCACGGTGGCCCTGGCGGGACTTTCAAATGAGGTGGAATaGCTAAGGATCCAGCTCAGT +
Preference number: 4 (lower is better)
Translates to: QGPVRVPHPYLTVALAGLSNEVE*LRIQLS
Trigger: ACTGAGCTGGATCCTTAGCCATTCCACCTCATTTGA...AAGTCCCGCCAGGGCCACCGTGAGATAGGGGTGTGGTACTCTAACCGGACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
CDS-3UTR TCA 90 bp GACCGCCACGAAGACAGCAATGATGAGGCCACAGATCAGCACGACAAAAATGCCGGGAGACTGCCAGGCTaGCATCTTCATTACTGGGGT +
Preference number: 4 (lower is better)
Translates to: DRHEDSNDEATDQHDKNAGRLPG*HLHYWG
Trigger: ACCCCAGTAATGAAGATGTCAGCCTGGCAGTCTCCC...GGCATTTTTGTCGTGCTGATCTGTGGCCTCATCATTGCTGTCTTCGTGGCGGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
CDS-3UTR GCA 90 bp CCCAAGAGACCCTCTCCCTGGGGGCGTCTCATAGAAATTTCTGAGGTTTCTCCCCGCCAATGTTCTCCATaGCCAAACCTTTGGCCCTGT +
Preference number: 4 (lower is better)
Translates to: PKRPSPWGRLIEISEVSPRQCSP*PNLWPC
Trigger: ACAGGGCCAAAGGTTTGGGCATGGAGAACATTGGCG...GGGAGAAACCTCAGAAATTTCTATGAGACGCCCCCAGGGAGAGGGTCTCTTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CCA 90 bp CTCAACCCGCCCGGTCAGCCCGTCATACTCTACCATTCGAAGGTAGTTCATAAGTGTCTACTTCCACTCTaGCCTTGGCTGGGACCTCGA +
Preference number: 4 (lower is better)
Translates to: LNPPGQPVILYHSKVVHKCLLPL*PWLGPR
Trigger: TCGAGGTCCCAGCCAAGGCCAGAGTGGAAGTAGACA...CTTATGAACTACCTTCGAATGGTAGAGTATGACGGGCTGACCGGGCGGGTTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp CTCAACCCGCCCGGTCAGCCCGTCATACTCTACCATTCGAAGGTAGTTCATAAGGGACCCACCTTGATGTaGGGAATCTCCTTCTCCCCA +
Preference number: 4 (lower is better)
Translates to: LNPPGQPVILYHSKVVHKGPTLM*GISFSP
Trigger: TGGGGAGAAGGAGATTCCCCACATCAAGGTGGGTCC...CTTATGAACTACCTTCGAATGGTAGAGTATGACGGGCTGACCGGGCGGGTTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CCA 90 bp CCCAAGAGACCCTCTCCCTGGGGGCGTCTCATAGAAATTTCTGAGGTTTCTCCCATAAGGCTGGTCCCATaGGGCCAAATGTTGGCCGAA +
Preference number: 4 (lower is better)
Translates to: PKRPSPWGRLIEISEVSPIRLVP*GQMLAE
Trigger: TTCGGCCAACATTTGGCCCCATGGGACCAGCCTTAT...GGGAGAAACCTCAGAAATTTCTATGAGACGCCCCCAGGGAGAGGGTCTCTTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
3UTR CAA 72 bp GGGTTCTCCAGGATAGTTGTGACCACCAGAGTCTTGTaGGCTAGAGTCTGTGACAGGTTGATGTCCAGGGTG +
Preference number: 4 (lower is better)
Translates to: GFSRIVVTTRVL*ARVCDRLMSRV
Trigger: CACCCTGGACATCAACCTGTCACAGACTCTAGCCAACAAGACTCTGGTGGTCACAACTATCCTGGAGAACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR CAA 72 bp TACGGGTTCTCCAGGATAGTTGTGACCACCAGAGTCTaGTTGGCTAGAGTCTGTGACAGGTTGATGTCCAGG +
Preference number: 4 (lower is better)
Translates to: YGFSRIVVTTRV*LARVCDRLMSR
Trigger: CCTGGACATCAACCTGTCACAGACTCTAGCCAACAAGACTCTGGTGGTCACAACTATCCTGGAGAACCCGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
3UTR CAA 72 bp CAATGTCATGGGCACTGCCAGTGTTTAGGGCTCAGCTaGGTTGATCATCCATCAGAAAAGAACCCGGGTGCT +
Preference number: 4 (lower is better)
Translates to: QCHGHCQCLGLS*VDHPSEKNPGA
Trigger: AGCACCCGGGTTCTTTTCTGATGGATGATCAACCAAGCTGAGCCCTAAACACTGGCAGTGCCCATGACATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
CDS-3UTR GCA 90 bp CTTAGCCTAAGACATCCAATGTCATGGGCACTGCCAGTGTTTAGGGCTCAGCTTGAGGATTCGGGAGACTaGCAGGCTGACATCTTCATT +
Preference number: 4 (lower is better)
Translates to: LSLRHPMSWALPVFRAQLEDSGD*QADIFI
Trigger: AATGAAGATGTCAGCCTGGCAGTCTCCCGAATCCTC...AAGCTGAGCCCTAAACACTGGCAGTGCCCATGACATTGGATGTCTTAGGCTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
CDS-3UTR CAA 90 bp TCCAACTCCGGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTCTGTGGTCCTCCTCCTaGGGGCACCGGCCGCCCTCC +
Preference number: 5 (lower is better)
Translates to: SNSGSSPHSPWPLESSVSLWSSS*GHRPPS
Trigger: GGAGGGCGGCCGGTGCCCCAAGGAGGAGGACCACAG...AGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCCGGAGTTGGA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CAA 90 bp CGCGCCGGCCGAGTAGAGCTTGCCGTTGCTGAGTCGCATCTCGCGGACTGCGCGAGCAGGCACTCAGCCTaGGCGCAGATGAGGCTAGCT +
Preference number: 5 (lower is better)
Translates to: RAGRVELAVAESHLADCASRHSA*AQMRLA
Trigger: AGCTAGCCTCATCTGCGCCAAGGCTGAGTGCCTGCT...CGCGCAGTCCGCGAGATGCGACTCAGCAACGGCAAGCTCTACTCGGCCGGCGCG
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
CDS-3UTR CAA 90 bp AGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTGCGCTCCTCCCGTCCACCTGGCAGCTGGGATaGGCGAAGGCGACTATCAGC +
Preference number: 5 (lower is better)
Translates to: SPHSPWPLESSVSALLPSTWQLG*AKATIS
Trigger: GCTGATAGTCGCCTTCGCCAATCCCAGCTGCCAGGT...GGACGGGAGGAGCGCAGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CAA 90 bp CGCGCCGGCCGAGTAGAGCTTGCCGTTGCTGAGTCGCATCTCGCGGACTGCGCGACCTCGATGATCCCATaGATCTGCTCTCGGGCCAGG +
Preference number: 5 (lower is better)
Translates to: RAGRVELAVAESHLADCATSMIP*ICSRAR
Trigger: CCTGGCCCGAGAGCAGATCAATGGGATCATCGAGGT...CGCGCAGTCCGCGAGATGCGACTCAGCAACGGCAAGCTCTACTCGGCCGGCGCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS GCA 90 bp ACTTCCACTCTGGCCTTGGCTGGGACCTCGATGATCCCATTGATCTaGTCTCGGGCCAGGGCCAGGGCCAGACGCTCACCACGGCCACAC +
Preference number: 5 (lower is better)
Translates to: TSTLALAGTSMIPLI*SRARARARRSPRPH
Trigger: GTGTGGCCGTGGTGAGCGTCTGGCCCTGGCCCTGGCCCGAGAGCAGATCAATGGGATCATCGAGGTCCCAGCCAAGGCCAGAGTGGAAGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CAA 90 bp AGTCCTCGGTCTCTGCGCTCCTCCCGTCCACGGTGCGGGATAGAATGCGGGCGTACCTGGCAGCTGGGATaGGCGAAGGCGACTATCAGC +
Preference number: 5 (lower is better)
Translates to: SPRSLRSSRPRCGIECGRTWQLG*AKATIS
Trigger: GCTGATAGTCGCCTTCGCCAATCCCAGCTGCCAGGT...ACGCCCGCATTCTATCCCGCACCGTGGACGGGAGGAGCGCAGAGACCGAGGACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CAA 90 bp GGGAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTGCGCTCCTCACTTCCACTCTGGCCTaGGCTGGGACCTCGATGATC +
Preference number: 5 (lower is better)
Translates to: GSSPHSPWPLESSVSALLTSTLA*AGTSMI
Trigger: GATCATCGAGGTCCCAGCCAAGGCCAGAGTGGAAGT...GAGGAGCGCAGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CAA 90 bp AGTCCTCGGTCTCTGCGCTCCTCCCGTCCACGGTGCGGGATAGAATGCGGGCGTAGCAGGCACTCAGCCTaGGCGCAGATGAGGCTAGCT +
Preference number: 5 (lower is better)
Translates to: SPRSLRSSRPRCGIECGRSRHSA*AQMRLA
Trigger: AGCTAGCCTCATCTGCGCCAAGGCTGAGTGCCTGCT...ACGCCCGCATTCTATCCCGCACCGTGGACGGGAGGAGCGCAGAGACCGAGGACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS-3UTR CAA 90 bp GAGTCCTCGGTCTCTGCGCTCCTCCCGTCCACGGTGCGGGATAGAATGCGGGCGTGGGTGAGGTTGCAATaGAGGCGCCTGTGGTACTCG +
Preference number: 5 (lower is better)
Translates to: ESSVSALLPSTVRDRMRAWVRLQ*RRLWYS
Trigger: CGAGTACCACAGGCGCCTCAATTGCAACCTCACCCA...CGCCCGCATTCTATCCCGCACCGTGGACGGGAGGAGCGCAGAGACCGAGGACTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CAA 90 bp AACCGTTGGGCTCAGGTGCCCCGTAGAGTCCGTCCTCTACCAACCGCAGGCGGTACCTGGCAGCTGGGATaGGCGAAGGCGACTATCAGC +
Preference number: 5 (lower is better)
Translates to: NRWAQVPRRVRPLPTAGGTWQLG*AKATIS
Trigger: GCTGATAGTCGCCTTCGCCAATCCCAGCTGCCAGGT...ACCGCCTGCGGTTGGTAGAGGACGGACTCTACGGGGCACCTGAGCCCAACGGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CAA 90 bp GAGGCGCAGGCCTGCTCCGGAGCCGGGCTCGGACTTCACCAGGAATTGAAGGCAACGGACAGTGTCTCCTaGGAGATGAGGAAGCCTCGC +
Preference number: 5 (lower is better)
Translates to: EAQACSGAGLGLHQELKATDSVS*EMRKPR
Trigger: GCGAGGCTTCCTCATCTCCAAGGAGACACTGTCCGT...TGCCTTCAATTCCTGGTGAAGTCCGAGCCCGGCTCCGGAGCAGGCCTGCGCCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS-3UTR CAA 90 bp GAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTGCGCTCCTCCCTTGGTCCTCTGCCCTTaGCTGTTGAACTCAACCCGC +
Preference number: 5 (lower is better)
Translates to: EQPPQSVALRVLGLCAPPLVLCP*LLNSTR
Trigger: GCGGGTTGAGTTCAACAGCAAAGGGCAGAGGACCAA...GGGAGGAGCGCAGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CAA 90 bp CGCGCCGGCCGAGTAGAGCTTGCCGTTGCTGAGTCGCATCTCGCGGACTGCGCGTGGGAGATGGACGCATaGGCATCAATGATGATGGTG +
Preference number: 5 (lower is better)
Translates to: RAGRVELAVAESHLADCAWEMDA*ASMMMV
Trigger: CACCATCATCATTGATGCCAATGCGTCCATCTCCCA...CGCGCAGTCCGCGAGATGCGACTCAGCAACGGCAAGCTCTACTCGGCCGGCGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
CDS-3UTR CAA 90 bp CACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCGTGTCACCGATCTGGGTGAGGTaGCAATTGAGGCGCCTGTGG +
Preference number: 5 (lower is better)
Translates to: HPHVQRPSPPPEVWRAVSPIWVR*QLRRLW
Trigger: CCACAGGCGCCTCAATTGCAACCTCACCCAGATCGG...TGACACGGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CAA 90 bp CCAGGAATTGAAGGCAAAATCGCGGCGTCCTGTCCGTCTGGGGCGCATCGCGTCTCCATGCCCAAACCTTaGGCCCTGTGGTCCTCCTCC +
Preference number: 5 (lower is better)
Translates to: PGIEGKIAASCPSGAHRVSMPKP*ALWSSS
Trigger: GGAGGAGGACCACAGGGCCAAAGGTTTGGGCATGGA...GACGCGATGCGCCCCAGACGGACAGGACGCCGCGATTTTGCCTTCAATTCCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CAA 90 bp ACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCGTGTCACCTCGATGATCCCATaGATCTGCTCTCGGGCCAGG +
Preference number: 5 (lower is better)
Translates to: TPTCPEALPTSRSVESRVTSMIP*ICSRAR
Trigger: CCTGGCCCGAGAGCAGATCAATGGGATCATCGAGGT...GACACGGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CAA 90 bp GAGCAGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTGCGCTCCTCCCTGGGAGATGGACGCATaGGCATCAATGATGATGGTG +
Preference number: 5 (lower is better)
Translates to: EQPPQSVALRVLGLCAPPWEMDA*ASMMMV
Trigger: CACCATCATCATTGATGCCAATGCGTCCATCTCCCA...GGGAGGAGCGCAGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCTGCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS-3UTR CAA 90 bp GAGGCGCAGGCCTGCTCCGGAGCCGGGCTCGGACTTCACCAGGAATTGAAGGCAGAAAAGCCCAGGATGTaGGAGGAGTCCTCCACGATA +
Preference number: 5 (lower is better)
Translates to: EAQACSGAGLGLHQELKAEKPRM*EESSTI
Trigger: TATCGTGGAGGACTCCTCCAACATCCTGGGCTTTTC...TGCCTTCAATTCCTGGTGAAGTCCGAGCCCGGCTCCGGAGCAGGCCTGCGCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CAA 90 bp AGCCCCCACAGTCCGTGGCCCTTAGAGTCCTCGGTCTCTGCGCTCCTCCCGTCCATGATGGTGGACACTTaGTCATCTCGGATCTCCTTG +
Preference number: 5 (lower is better)
Translates to: SPHSPWPLESSVSALLPSMMVDT*SSRISL
Trigger: CAAGGAGATCCGAGATGACAAAGTGTCCACCATCAT...GGACGGGAGGAGCGCAGAGACCGAGGACTCTAAGGGCCACGGACTGTGGGGGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS-3UTR CAA 90 bp ACCAGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAAAGGGGTGGGAGGTGTaGAACATGGAAAAGCCCAGG +
Preference number: 5 (lower is better)
Translates to: TRGHPHVQRPSPPPEVWRKGWEV*NMEKPR
Trigger: CCTGGGCTTTTCCATGTTCAACACCTCCCACCCCTT...TCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CAA 90 bp ACCAGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGATCCCTCCAGGACATGTaGAGGCTGCGCACAAACTCT +
Preference number: 5 (lower is better)
Translates to: TRGHPHVQRPSPPPEVWRSLQDM*RLRTNS
Trigger: AGAGTTTGTGCGCAGCCTCAACATGTCCTGGAGGGA...TCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CAA 90 bp AGGGGACACCCACATGTCCAGAGGCCCTCCCCACCTCCAGAAGTGTGGAGAGCCGTGACCACCAGAGTCTaGTTGGCTAGAGTCTGTGAC +
Preference number: 5 (lower is better)
Translates to: RGHPHVQRPSPPPEVWRAVTTRV*LARVCD
Trigger: GTCACAGACTCTAGCCAACAAGACTCTGGTGGTCAC...GGCTCTCCACACTTCTGGAGGTGGGGAGGGCCTCTGGACATGTGGGTGTCCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS GCA 90 bp GACTGCCAGGCTGACATCTTCATTACTGGGGTACAGGCTGACAGATaGGAAGCGAAGGTACTGAAGGCGGGGCGTCTCCTCAGGACCCAC +
Preference number: 5 (lower is better)
Translates to: DCQADIFITGVQADR*EAKVLKAGRLLRTH
Trigger: GTGGGTCCTGAGGAGACGCCCCGCCTTCAGTACCTTCGCTTCGCATCTGTCAGCCTGTACCCCAGTAATGAAGATGTCAGCCTGGCAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS-3UTR CAA 90 bp AGCCGGGCTCGGACTTCACCAGGAATTGAAGGCAAAATCGCGGCGTCCTGTCCGAGAGTCTGTGACAGGTaGATGTCCAGGGTGGTGGCA +
Preference number: 5 (lower is better)
Translates to: SRARTSPGIEGKIAASCPRVCDR*MSRVVA
Trigger: TGCCACCACCCTGGACATCAACCTGTCACAGACTCT...CGGACAGGACGCCGCGATTTTGCCTTCAATTCCTGGTGAAGTCCGAGCCCGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CAA 90 bp TGTGGAGAGCCGTGTCAAGTCTTGGGGCATCTGGGCAGTCCCAGGTTGGGGTCCACCACCAGAGTCTTGTaGGCTAGAGTCTGTGACAGG +
Preference number: 5 (lower is better)
Translates to: CGEPCQVLGHLGSPRLGSTTRVL*ARVCDR
Trigger: CCTGTCACAGACTCTAGCCAACAAGACTCTGGTGGT...GGACCCCAACCTGGGACTGCCCAGATGCCCCAAGACTTGACACGGCTCTCCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CAA 90 bp AGCGTGGATAGTGCCGTACTCAATGTTGGTCTGATCCGCCAGGTCGTCAGCCGAACTTCCACTCTGGCCTaGGCTGGGACCTCGATGATC +
Preference number: 5 (lower is better)
Translates to: SVDSAVLNVGLIRQVVSRTSTLA*AGTSMI
Trigger: GATCATCGAGGTCCCAGCCAAGGCCAGAGTGGAAGT...TCGGCTGACGACCTGGCGGATCAGACCAACATTGAGTACGGCACTATCCACGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CAA 90 bp GCGAGGTCTTTCGGCAAGACACGGCGTGGCGTAGCTCCTGCAGCATCTCCTGGCATGATGGTGGACACTTaGTCATCTCGGATCTCCTTG +
Preference number: 5 (lower is better)
Translates to: ARSFGKTRRGVAPAASPGMMVDT*SSRISL
Trigger: CAAGGAGATCCGAGATGACAAAGTGTCCACCATCAT...GCCAGGAGATGCTGCAGGAGCTACGCCACGCCGTGTCTTGCCGAAAGACCTCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
CDS-3UTR CAA 90 bp CCCAAGAGACCCTCTCCCTGGGGGCGTCTCATAGAAATTTCTGAGGTTTCTCCCGACAAGGCCTGGAAGTaGGGCCGGCGCATAACATAC +
Preference number: 5 (lower is better)
Translates to: PKRPSPWGRLIEISEVSPDKAWK*GRRITY
Trigger: GTATGTTATGCGCCGGCCCAACTTCCAGGCCTTGTC...GGGAGAAACCTCAGAAATTTCTATGAGACGCCCCCAGGGAGAGGGTCTCTTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003468.10
CDS-3UTR CAA 90 bp ACGACAAAAATGCCGCCAATGTTCTCCATGCCCAAACCTTTGGCCCTGTGGTCCACTTCCACTCTGGCCTaGGCTGGGACCTCGATGATC +
Preference number: 5 (lower is better)
Translates to: TTKMPPMFSMPKPLALWSTSTLA*AGTSMI
Trigger: GATCATCGAGGTCCCAGCCAAGGCCAGAGTGGAAGT...GGACCACAGGGCCAAAGGTTTGGGCATGGAGAACATTGGCGGCATTTTTGTCGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS-3UTR CAA 90 bp CTCAACCCGCCCGGTCAGCCCGTCATACTCTACCATTCGAAGGTAGTTCATAAGGCCAGACTGGCAACTTaGGAAGATCTTGGCTCAAAT +
Preference number: 5 (lower is better)
Translates to: LNPPGQPVILYHSKVVHKARLAT*EDLGSN
Trigger: ATTTGAGCCAAGATCTTCCAAAGTTGCCAGTCTGGC...CTTATGAACTACCTTCGAATGGTAGAGTATGACGGGCTGACCGGGCGGGTTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2
CDS GCA 72 bp CTGGCCTTGGCTGGGACCTCGATGATCCCATTGATCTaGTCTCGGGCCAGGGCCAGGGCCAGACGCTCACCA +
Preference number: 6 (lower is better)
Translates to: LALAGTSMIPLI*SRARARARRSP
Trigger: TGGTGAGCGTCTGGCCCTGGCCCTGGCCCGAGAGCAGATCAATGGGATCATCGAGGTCCCAGCCAAGGCCAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS CCA 72 bp GCCAGGGCCAGACGCTCACCACGGCCACACACGGTCTaGTCGTCCAGGATTGCAGCCATGCGCAGTGATGAC +
Preference number: 6 (lower is better)
Translates to: ARARRSPRPHTV*SSRIAAMRSDD
Trigger: GTCATCACTGCGCATGGCTGCAATCCTGGACGACCAGACCGTGTGTGGCCGTGGTGAGCGTCTGGCCCTGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS CAA 90 bp ATGTCTACTTCCACTCTGGCCTTGGCTGGGACCTCGATGATCCCATaGATCTGCTCTCGGGCCAGGGCCAGGGCCAGACGCTCACCACGG +
Preference number: 6 (lower is better)
Translates to: MSTSTLALAGTSMIP*ICSRARARARRSPR
Trigger: CCGTGGTGAGCGTCTGGCCCTGGCCCTGGCCCGAGAGCAGATCAATGGGATCATCGAGGTCCCAGCCAAGGCCAGAGTGGAAGTAGACAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS TCA 72 bp CTGGGGTACAGGCTGACAGATGCGAAGCGAAGGTACTaGAGGCGGGGCGTCTCCTCAGGACCCACCTTGATG +
Preference number: 6 (lower is better)
Translates to: LGYRLTDAKRRY*RRGVSSGPTLM
Trigger: CATCAAGGTGGGTCCTGAGGAGACGCCCCGCCTTCAGTACCTTCGCTTCGCATCTGTCAGCCTGTACCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS CCA 72 bp CTCCCCACAGATATGGCTCACGGTGGAGGCAGAAGCTaGGCTGGAGGAGGGTCCCAAGACAGATACAACCCC +
Preference number: 6 (lower is better)
Translates to: LPTDMAHGGGRS*AGGGSQDRYNP
Trigger: GGGGTTGTATCTGTCTTGGGACCCTCCTCCAGCCCAGCTTCTGCCTCCACCGTGAGCCATATCTGTGGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000003468.10
ENSMUST00000205328.2
ENSMUST00000206134.2
CDS GCA 72 bp GCTGACATCTTCATTACTGGGGTACAGGCTGACAGATaGGAAGCGAAGGTACTGAAGGCGGGGCGTCTCCTC +
Preference number: 6 (lower is better)
Translates to: ADIFITGVQADR*EAKVLKAGRLL
Trigger: GAGGAGACGCCCCGCCTTCAGTACCTTCGCTTCGCATCTGTCAGCCTGTACCCCAGTAATGAAGATGTCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003468.10
ENSMUST00000206134.2
CDS CCA 72 bp ACCTGTCTGGGCTACAGAGTGAGCTTAAGGCCAGACTaGCAACTTTGGAAGATCTTGGCTCAAATGAGGTGG +
Preference number: 6 (lower is better)
Translates to: TCLGYRVSLRPD*QLWKILAQMRW
Trigger: CCACCTCATTTGAGCCAAGATCTTCCAAAGTTGCCAGTCTGGCCTTAAGCTCACTCTGTAGCCCAGACAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206134.2