RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GRIFIN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036586

Ensembl transcript IDs: ENSMUST00000042993.7

Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp TATTTTATTGAAGGTAAAGCTCGGGGTTCACACAGAGCCTCAGCTTCCCAGCATCCAGGTAGAAGGGGATaGAGGATGGTCAAGGCTGGC +
Preference number: 2 (lower is better)
Translates to: YFIEGKARGSHRASASQHPGRRG*RMVKAG
Trigger: GCCAGCCTTGACCATCCTGCATCCCCTTCTACCTGG...ATGCTGGGAAGCTGAGGCTCTGTGTGAACCCCGAGCTTTACCTTCAATAAAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
3UTR GCA 72 bp TGTAGTGTGTGTCCCGTGGCTCCAGGTAGAAGGGGATaGAGGATGGTCAAGGCTGGCTCTTGTAGGCTGTGG +
Preference number: 3 (lower is better)
Translates to: CSVCPVAPGRRG*RMVKAGSCRLW
Trigger: CCACAGCCTACAAGAGCCAGCCTTGACCATCCTGCATCCCCTTCTACCTGGAGCCACGGGACACACACTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS-3UTR GCA 90 bp TTATTGAAGGTAAAGCTCGGGGTTCACACAGAGCCTCAGCTTCCCAGCATCTATCTGGACACCTCCTCCTaGCCCCACCGTCCTCCCTGG +
Preference number: 4 (lower is better)
Translates to: LLKVKLGVHTEPQLPSIYLDTSS*PHRPPW
Trigger: CCAGGGAGGACGGTGGGGGCAGGAGGAGGTGTCCAG...ATAGATGCTGGGAAGCTGAGGCTCTGTGTGAACCCCGAGCTTTACCTTCAATAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS-3UTR GCA 90 bp TATTTTATTGAAGGTAAAGCTCGGGGTTCACACAGAGCCTCAGCTTCCCAGCATGTGGCCAGCGGTCGGTaGCGATGTGGGAACTGGAGC +
Preference number: 4 (lower is better)
Translates to: YFIEGKARGSHRASASQHVASGR*RCGNWS
Trigger: GCTCCAGTTCCCACATCGGCACCGACCGCTGGCCAC...ATGCTGGGAAGCTGAGGCTCTGTGTGAACCCCGAGCTTTACCTTCAATAAAATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS-3UTR CCA 90 bp CATATTTTATTGAAGGTAAAGCTCGGGGTTCACACAGAGCCTCAGCTTCCCAGCTTGGCCAGCTCCACCTaGGCCAGCCGATGCTCACTG +
Preference number: 4 (lower is better)
Translates to: HILLKVKLGVHTEPQLPSLASST*ASRCSL
Trigger: CAGTGAGCATCGGCTGGCCCAGGTGGAGCTGGCCAA...GCTGGGAAGCTGAGGCTCTGTGTGAACCCCGAGCTTTACCTTCAATAAAATATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS-3UTR GCA 90 bp TTATTGAAGGTAAAGCTCGGGGTTCACACAGAGCCTCAGCTTCCCAGCATCTATACCTGGGCCAGCCGATaGTCACTGAGCACTCGCACT +
Preference number: 4 (lower is better)
Translates to: LLKVKLGVHTEPQLPSIYTWASR*SLSTRT
Trigger: AGTGCGAGTGCTCAGTGAGCATCGGCTGGCCCAGGT...ATAGATGCTGGGAAGCTGAGGCTCTGTGTGAACCCCGAGCTTTACCTTCAATAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS-3UTR CCA 90 bp CATATTTTATTGAAGGTAAAGCTCGGGGTTCACACAGAGCCTCAGCTTCCCAGCCATTGCCCACCACCGTaGCGCTGGAGAATCGAGGTT +
Preference number: 4 (lower is better)
Translates to: HILLKVKLGVHTEPQLPSHCPPP*RWRIEV
Trigger: AACCTCGATTCTCCAGCGCCACGGTGGTGGGCAATG...GCTGGGAAGCTGAGGCTCTGTGTGAACCCCGAGCTTTACCTTCAATAAAATATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS-3UTR CCA 90 bp TTATTGAAGGTAAAGCTCGGGGTTCACACAGAGCCTCAGCTTCCCAGCATCTATTCAGTGGGAATATGCTaGACACCTCCTCCTGCCCCC +
Preference number: 4 (lower is better)
Translates to: LLKVKLGVHTEPQLPSIYSVGIC*TPPPAP
Trigger: GGGGGCAGGAGGAGGTGTCCAGCATATTCCCACTGA...ATAGATGCTGGGAAGCTGAGGCTCTGTGTGAACCCCGAGCTTTACCTTCAATAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS-3UTR GCA 90 bp TTATTGAAGGTAAAGCTCGGGGTTCACACAGAGCCTCAGCTTCCCAGCATCTATGAGTCAGTGGGAATATaGTGGACACCTCCTCCTGCC +
Preference number: 4 (lower is better)
Translates to: LLKVKLGVHTEPQLPSIYESVGI*WTPPPA
Trigger: GGCAGGAGGAGGTGTCCAGCATATTCCCACTGACTC...ATAGATGCTGGGAAGCTGAGGCTCTGTGTGAACCCCGAGCTTTACCTTCAATAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS-3UTR GCA 90 bp TTATTGAAGGTAAAGCTCGGGGTTCACACAGAGCCTCAGCTTCCCAGCATCTATCTCTTCTCCAGCATCTaGATGTCCCTGGACAGTCAG +
Preference number: 4 (lower is better)
Translates to: LLKVKLGVHTEPQLPSIYLFSSI*MSLDSQ
Trigger: CTGACTGTCCAGGGACATGCAGATGCTGGAGAAGAG...ATAGATGCTGGGAAGCTGAGGCTCTGTGTGAACCCCGAGCTTTACCTTCAATAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS-3UTR CCA 90 bp CATATTTTATTGAAGGTAAAGCTCGGGGTTCACACAGAGCCTCAGCTTCCCAGCCTCTCCCAGAGTCAGTaGGAATATGCTGGACACCTC +
Preference number: 4 (lower is better)
Translates to: HILLKVKLGVHTEPQLPSLSQSQ*EYAGHL
Trigger: GAGGTGTCCAGCATATTCCCACTGACTCTGGGAGAG...GCTGGGAAGCTGAGGCTCTGTGTGAACCCCGAGCTTTACCTTCAATAAAATATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS-3UTR GCA 90 bp TTATTGAAGGTAAAGCTCGGGGTTCACACAGAGCCTCAGCTTCCCAGCATCTATAATGTGGAAGTGTTCTaGGTCTGCACTCACCTCCAT +
Preference number: 4 (lower is better)
Translates to: LLKVKLGVHTEPQLPSIYNVEVF*VCTHLH
Trigger: ATGGAGGTGAGTGCAGACGCAGAACACTTCCACATT...ATAGATGCTGGGAAGCTGAGGCTCTGTGTGAACCCCGAGCTTTACCTTCAATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS CCA 90 bp AAGAAGTTGATCTCGAACTTCTCTTCTCCAGCATCTGCATGTCCCTaGACAGTCAGGCTCCAGCCAGGGGCCAGACCCCCTGCACAGAAG +
Preference number: 5 (lower is better)
Translates to: KKLISNFSSPASACP*TVRLQPGARPPAQK
Trigger: CTTCTGTGCAGGGGGTCTGGCCCCTGGCTGGAGCCTGACTGTCCAGGGACATGCAGATGCTGGAGAAGAGAAGTTCGAGATCAACTTCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS-3UTR CAA 90 bp TTATTGAAGGTAAAGCTCGGGGTTCACACAGAGCCTCAGCTTCCCAGCATCTATCCTCCCTGGAAAGCATaGCCCACCACCGTGGCGCTG +
Preference number: 5 (lower is better)
Translates to: LLKVKLGVHTEPQLPSIYPPWKA*PTTVAL
Trigger: CAGCGCCACGGTGGTGGGCAATGCTTTCCAGGGAGG...ATAGATGCTGGGAAGCTGAGGCTCTGTGTGAACCCCGAGCTTTACCTTCAATAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS CCA 90 bp AAAGCATTGCCCACCACCGTGGCGCTGGAGAATCGAGGTTTGACGTaGAAGGCGATGTCTCCGGCGTCTGTTAAGAAGTTGATCTCGAAC +
Preference number: 5 (lower is better)
Translates to: KALPTTVALENRGLT*KAMSPASVKKLISN
Trigger: GTTCGAGATCAACTTCTTAACAGACGCCGGAGACATCGCCTTCCACGTCAAACCTCGATTCTCCAGCGCCACGGTGGTGGGCAATGCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS GCA 90 bp GAACTGGAGCACCTTTTGTTCCTGGGCATAAATGTGGAAGTGTTCTaGGTCTGCACTCACCTCCATCTCAAAGGGCTCTCCCAGAGTCAG +
Preference number: 5 (lower is better)
Translates to: ELEHLLFLGINVEVF*VCTHLHLKGLSQSQ
Trigger: CTGACTCTGGGAGAGCCCTTTGAGATGGAGGTGAGTGCAGACGCAGAACACTTCCACATTTATGCCCAGGAACAAAAGGTGCTCCAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS GCA 72 bp AGGCTCCGCTTGGCCAGCTCCACCTGGGCCAGCCGATaGTCACTGAGCACTCGCACTCTGGTGATGGTGGCC +
Preference number: 6 (lower is better)
Translates to: RLRLASSTWASR*SLSTRTLVMVA
Trigger: GGCCACCATCACCAGAGTGCGAGTGCTCAGTGAGCATCGGCTGGCCCAGGTGGAGCTGGCCAAGCGGAGCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS CCA 72 bp ACTCACCTCCATCTCAAAGGGCTCTCCCAGAGTCAGTaGGAATATGCTGGACACCTCCTCCTGCCCCCACCG +
Preference number: 6 (lower is better)
Translates to: THLHLKGLSQSQ*EYAGHLLLPPP
Trigger: CGGTGGGGGCAGGAGGAGGTGTCCAGCATATTCCCACTGACTCTGGGAGAGCCCTTTGAGATGGAGGTGAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS CAA 72 bp GCATTGCCCACCACCGTGGCGCTGGAGAATCGAGGTTaGACGTGGAAGGCGATGTCTCCGGCGTCTGTTAAG +
Preference number: 6 (lower is better)
Translates to: ALPTTVALENRG*TWKAMSPASVK
Trigger: CTTAACAGACGCCGGAGACATCGCCTTCCACGTCAAACCTCGATTCTCCAGCGCCACGGTGGTGGGCAATGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS TCA 72 bp CATTGCCCACCACCGTGGCGCTGGAGAATCGAGGTTTaGCGTGGAAGGCGATGTCTCCGGCGTCTGTTAAGA +
Preference number: 6 (lower is better)
Translates to: HCPPPWRWRIEV*RGRRCLRRLLR
Trigger: TCTTAACAGACGCCGGAGACATCGCCTTCCACGTCAAACCTCGATTCTCCAGCGCCACGGTGGTGGGCAATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS CCA 72 bp CCCACCACCGTGGCGCTGGAGAATCGAGGTTTGACGTaGAAGGCGATGTCTCCGGCGTCTGTTAAGAAGTTG +
Preference number: 6 (lower is better)
Translates to: PTTVALENRGLT*KAMSPASVKKL
Trigger: CAACTTCTTAACAGACGCCGGAGACATCGCCTTCCACGTCAAACCTCGATTCTCCAGCGCCACGGTGGTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS CAA 90 bp CCCTGGAAAGCATTGCCCACCACCGTGGCGCTGGAGAATCGAGGTTaGACGTGGAAGGCGATGTCTCCGGCGTCTGTTAAGAAGTTGATC +
Preference number: 6 (lower is better)
Translates to: PWKALPTTVALENRG*TWKAMSPASVKKLI
Trigger: GATCAACTTCTTAACAGACGCCGGAGACATCGCCTTCCACGTCAAACCTCGATTCTCCAGCGCCACGGTGGTGGGCAATGCTTTCCAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS CAA 90 bp CGAGGTTTGACGTGGAAGGCGATGTCTCCGGCGTCTGTTAAGAAGTaGATCTCGAACTTCTCTTCTCCAGCATCTGCATGTCCCTGGACA +
Preference number: 6 (lower is better)
Translates to: RGLTWKAMSPASVKK*ISNFSSPASACPWT
Trigger: TGTCCAGGGACATGCAGATGCTGGAGAAGAGAAGTTCGAGATCAACTTCTTAACAGACGCCGGAGACATCGCCTTCCACGTCAAACCTCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS TCA 72 bp CGTGGAAGGCGATGTCTCCGGCGTCTGTTAAGAAGTTaGTCTCGAACTTCTCTTCTCCAGCATCTGCATGTC +
Preference number: 6 (lower is better)
Translates to: RGRRCLRRLLRS*SRTSLLQHLHV
Trigger: GACATGCAGATGCTGGAGAAGAGAAGTTCGAGATCAACTTCTTAACAGACGCCGGAGACATCGCCTTCCACG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS GCA 72 bp CACCTTTTGTTCCTGGGCATAAATGTGGAAGTGTTCTaGGTCTGCACTCACCTCCATCTCAAAGGGCTCTCC +
Preference number: 6 (lower is better)
Translates to: HLLFLGINVEVF*VCTHLHLKGLS
Trigger: GGAGAGCCCTTTGAGATGGAGGTGAGTGCAGACGCAGAACACTTCCACATTTATGCCCAGGAACAAAAGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7
CDS CAA 72 bp ACGTGGAAGGCGATGTCTCCGGCGTCTGTTAAGAAGTaGATCTCGAACTTCTCTTCTCCAGCATCTGCATGT +
Preference number: 6 (lower is better)
Translates to: TWKAMSPASVKK*ISNFSSPASAC
Trigger: ACATGCAGATGCTGGAGAAGAGAAGTTCGAGATCAACTTCTTAACAGACGCCGGAGACATCGCCTTCCACGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042993.7