RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GRID2IP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000010825

Ensembl transcript IDs: ENSMUST00000010969.15, ENSMUST00000110733.9, ENSMUST00000120825.2

Found 350 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCCAAGGTaGATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGC +
Preference number: 1 (lower is better)
Translates to: RGCSPTAPKPFLQPR*MVKYPGPCDIPPWC
Trigger: GCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
3UTR CCA 90 bp GCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCCAAGGTGCATaGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCC +
Preference number: 1 (lower is better)
Translates to: AAAPPHPSPSCSQGA*SSTLDPVTFLHGAA
Trigger: GGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
3UTR GCA 90 bp GCTCCCACCGAGCCACAGACAACCGCAGCAAGCCAGCATCCACTCTaGAGTCTGCCCTCCGGTGGGACATTCCCTGACACACAGCAGCAT +
Preference number: 1 (lower is better)
Translates to: APTEPQTTAASQHPL*SLPSGGTFPDTQQH
Trigger: ATGCTGCTGTGTGTCAGGGAATGTCCCACCGGAGGGCAGACTGCAGAGTGGATGCTGGCTTGCTGCGGTTGTCTGTGGCTCGGTGGGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
3UTR GCA 90 bp AGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTaGAGCCTCCAGCATCGGTCTCCGTGCTCAGACTGCAGAAGATGC +
Preference number: 1 (lower is better)
Translates to: RCMVKYPGPCDIPPW*SLQHRSPCSDCRRC
Trigger: GCATCTTCTGCAGTCTGAGCACGGAGACCGATGCTGGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
3UTR TCA 90 bp ACTTGGGAGGTAGAGACAGGAAGATCAGAAGTCCGAGGCTACCCTTaGCATAGTGAGCTGGAGGCCAGCCTGAGTGATATGAGACCCTGC +
Preference number: 1 (lower is better)
Translates to: TWEVETGRSEVRGYP*HSELEASLSDMRPC
Trigger: GCAGGGTCTCATATCACTCAGGCTGGCCTCCAGCTCACTATGTCAAGGGTAGCCTCGGACTTCTGATCTTCCTGTCTCTACCTCCCAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
3UTR-3UTR CCA 90 bp CCGTTGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTGTGACATTCCTCCATaGTGCAGCCTCCAGCATCGG +
Preference number: 2 (lower is better)
Translates to: PLWASRRKGGWPPEARETCDIPP*CSLQHR
Trigger: CCGATGCTGGAGGCTGCACCATGGAGGAATGTCACA...GGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAACGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
3UTR-3UTR GCA 90 bp AGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAATCTCCGTGCTCAGACTaGAGAAGATGCTTGGTGGCA +
Preference number: 2 (lower is better)
Translates to: RRKGGWPPEARETFLGDQSPCSD*RRCLVA
Trigger: TGCCACCAAGCATCTTCTGCAGTCTGAGCACGGAGA...TTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
3UTR-3UTR GCA 90 bp GGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCACAGCATCGGTCTCCGTaGTCAGACTGCAGAAGATGC +
Preference number: 2 (lower is better)
Translates to: GWPPEARETFLGDQGVWAQHRSP*SDCRRC
Trigger: GCATCTTCTGCAGTCTGAGCACGGAGACCGATGCTG...TGCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
3UTR-3UTR CCA 90 bp CAGCATTTTATTCACCGTTGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGTGTGACATTCCTCCATaGTGCAGCCTCCAGCATCGG +
Preference number: 2 (lower is better)
Translates to: QHFIHRCGHRGGRVGGHRCDIPP*CSLQHR
Trigger: CCGATGCTGGAGGCTGCACCATGGAGGAATGTCACA...CCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAACGGTGAATAAAATGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
3UTR-3UTR GCA 90 bp TCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCTCAGCATCGGTCTCCGTaGTCAGACTGCAGAAGATGC +
Preference number: 2 (lower is better)
Translates to: SWETKVYGQKRAKQNSAAQHRSP*SDCRRC
Trigger: GCATCTTCTGCAGTCTGAGCACGGAGACCGATGCTG...AGCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
3UTR-3UTR GCA 90 bp TTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCTCTCCGTGCTCAGACTaGAGAAGATGCTTGGTGGCA +
Preference number: 2 (lower is better)
Translates to: FLGDQGVWAKEGQAELGSSPCSD*RRCLVA
Trigger: TGCCACCAAGCATCTTCTGCAGTCTGAGCACGGAGA...GCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
3UTR CCA 72 bp AAGCAGAACTCGGCAGCTGAGGTAGCCGGAGACACGTaGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCA +
Preference number: 3 (lower is better)
Translates to: KQNSAAEVAGDT*LQPHRTQALPA
Trigger: TGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCGGCTACCTCAGCTGCCGAGTTCTGCTT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
3UTR TCA 72 bp GTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCTaGGGTAGCCGGAGACACGTGGCTGCAGCCCCACCG +
Preference number: 3 (lower is better)
Translates to: VWAKEGQAELGS*GSRRHVAAAPP
Trigger: CGGTGGGGCTGCAGCCACGTGTCTCCGGCTACCTCAGCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
3UTR GCA 72 bp AGACAACCGCAGCAAGCCAGCATCCACTCTGCAGTCTaGCCTCCGGTGGGACATTCCCTGACACACAGCAGC +
Preference number: 3 (lower is better)
Translates to: RQPQQASIHSAV*PPVGHSLTHSS
Trigger: GCTGCTGTGTGTCAGGGAATGTCCCACCGGAGGGCAGACTGCAGAGTGGATGCTGGCTTGCTGCGGTTGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
3UTR GCA 72 bp GAGCCACAGACAACCGCAGCAAGCCAGCATCCACTCTaGAGTCTGCCCTCCGGTGGGACATTCCCTGACACA +
Preference number: 3 (lower is better)
Translates to: EPQTTAASQHPL*SLPSGGTFPDT
Trigger: TGTGTCAGGGAATGTCCCACCGGAGGGCAGACTGCAGAGTGGATGCTGGCTTGCTGCGGTTGTCTGTGGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
3UTR CCA 72 bp AGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTaGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAG +
Preference number: 3 (lower is better)
Translates to: RVGGHRKPGRPS*ETKVYGQKRAK
Trigger: CTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
3UTR TCA 72 bp GCAGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTaGCATTCCTCCATGGTGCAGCCTCCAGCATCGGTC +
Preference number: 3 (lower is better)
Translates to: AAKVHGQVPWTL*HSSMVQPPASV
Trigger: GACCGATGCTGGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
3UTR GCA 72 bp GTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTaGAGCCTCCAGCATCGGTCTCCGTGCTCAGACTGC +
Preference number: 3 (lower is better)
Translates to: VKYPGPCDIPPW*SLQHRSPCSDC
Trigger: GCAGTCTGAGCACGGAGACCGATGCTGGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
3UTR CCA 72 bp ATTTTATTCACCGTTGTGGGCATCGAGGCGGAAGGGTaGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGG +
Preference number: 3 (lower is better)
Translates to: ILFTVVGIEAEG*VATGSQGDLLG
Trigger: CCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAACGGTGAATAAAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
3UTR CCA 72 bp ATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATaGTGCAGCCTCCAGCATCGGTCTCCGTGCTCAGAC +
Preference number: 3 (lower is better)
Translates to: MVKYPGPCDIPP*CSLQHRSPCSD
Trigger: GTCTGAGCACGGAGACCGATGCTGGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
3UTR TCA 72 bp TCCACTCTGCAGTCTGCCCTCCGGTGGGACATTCCCTaGCACACAGCAGCATTTTATTCACCGTTGTGGGCA +
Preference number: 3 (lower is better)
Translates to: STLQSALRWDIP*HTAAFYSPLWA
Trigger: TGCCCACAACGGTGAATAAAATGCTGCTGTGTGTCAGGGAATGTCCCACCGGAGGGCAGACTGCAGAGTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp CGGAGACACGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCCAAGGTAGCAGCTGCGCCAGATaGGCAGGCTCCAGGCGCCGG +
Preference number: 4 (lower is better)
Translates to: RRHVAAAPPHPSPSCSQGSSCAR*AGSRRR
Trigger: CCGGCGCCTGGAGCCTGCTCATCTGGCGCAGCTGCT...ACCTTGGCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp GGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGACCCCCAGGGCCAGTaGGACCGCCCAGCAGCGAGG +
Preference number: 4 (lower is better)
Translates to: GGRVGGHRKPGRPSWETKDPQGQ*DRPAAR
Trigger: CCTCGCTGCTGGGCGGTCGCACTGGCCCTGGGGGTC...CTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp ACCGTTGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACGCGTGGGCCATCCCCTaGCTGCAGGTCGCTGAGGGC +
Preference number: 4 (lower is better)
Translates to: TVVGIEAEGWVATGSQGDAWAIP*LQVAEG
Trigger: GCCCTCAGCGACCTGCAGGCAGGGGATGGCCCACGC...GTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAACGGT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp GCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGACCCACTGCAGCGAGGTaGGAGCTGACGCCCGGGTCG +
Preference number: 4 (lower is better)
Translates to: ASRRKGGWPPEARETFLGPTAAR*ELTPGS
Trigger: CGACCCGGGCGTCAGCTCTCACCTCGCTGCAGTGGG...TCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp GGTAGCCGGAGACACGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCCCACTTCCTTCTTCCTaGAGGGCTCCGGGCCGGGCA +
Preference number: 4 (lower is better)
Translates to: GSRRHVAAAPPHPSPSCSPLPSS*RAPGRA
Trigger: TGCCCGGCCCGGAGCCCTTCAGGAAGAAGGAAGTGG...GCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCGGCTACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp GCCAAGCAGAACTCGGCAGCTGAGGTAGCCGGAGACACGTGGCTGCAGCCCCACACTGGTCCGGCTCACTaGGGCGACCCGGAGCCTCGC +
Preference number: 4 (lower is better)
Translates to: AKQNSAAEVAGDTWLQPHTGPAH*GDPEPR
Trigger: GCGAGGCTCCGGGTCGCCTCAGTGAGCCGGACCAGT...GTGGGGCTGCAGCCACGTGTCTCCGGCTACCTCAGCTGCCGAGTTCTGCTTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CGGAGACACGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCCAAGGTCTGGTCTCCAGGCCCTaGGAGCGCAAGCTGCGACGG +
Preference number: 4 (lower is better)
Translates to: RRHVAAAPPHPSPSCSQGLVSRP*ERKLRR
Trigger: CCGTCGCAGCTTGCGCTCCCAGGGCCTGGAGACCAG...ACCTTGGCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CGGAGACACGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCCAAGGTGTCTCACTGCGGCGGTaGCCCACGCCTCGGGATAGC +
Preference number: 4 (lower is better)
Translates to: RRHVAAAPPHPSPSCSQGVSLRR*PTPRDS
Trigger: GCTATCCCGAGGCGTGGGCCACCGCCGCAGTGAGAC...ACCTTGGCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp AGCCGGAGACACGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCCAACCTCTACCACCAGCGTaGGCATGGCGCCACTGCCCT +
Preference number: 4 (lower is better)
Translates to: SRRHVAAAPPHPSPSCSQPLPPA*AWRHCP
Trigger: AGGGCAGTGGCGCCATGCCCACGCTGGTGGTAGAGG...TTGGCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCGGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CGGAGACACGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCCAAGGTGGGATTCCGAGCTGCTaGGAGAGGCCAGACCCCCAG +
Preference number: 4 (lower is better)
Translates to: RRHVAAAPPHPSPSCSQGGIPSC*ERPDPQ
Trigger: CTGGGGGTCTGGCCTCTCCCAGCAGCTCGGAATCCC...ACCTTGGCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CCGTTGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCGGGGCTGAGTGGAGGTaGGGGGATGTGGTCGGAGAT +
Preference number: 4 (lower is better)
Translates to: PLWASRRKGGWPPEARETGAEWR*GDVVGD
Trigger: ATCTCCGACCACATCCCCCCACCTCCACTCAGCCCC...GGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAACGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp GGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGGTCCAGCTGCTGGCTaGAGGTCCTCCCCTGGACTC +
Preference number: 4 (lower is better)
Translates to: GGRVGGHRKPGRPSWETKGPAAG*RSSPGL
Trigger: GAGTCCAGGGGAGGACCTTCAGCCAGCAGCTGGACC...CTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp TGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTAGCGCTCGGGAGGAGTaGGGAGGTGGTCCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: CGHRGGRVGGHRKPGRPSSAREE*GGGPAA
Trigger: AGCAGCTGGACCACCTCCTCACTCCTCCCGAGCGCT...AGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp TGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTCACCAGGACCACAGCTaGGGCTGGTCTCCAGGCCCT +
Preference number: 4 (lower is better)
Translates to: CGHRGGRVGGHRKPGRPSHQDHS*GWSPGP
Trigger: AGGGCCTGGAGACCAGCCTCAGCTGTGGTCCTGGTG...AGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp TGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTGTGCCATCGCCAGCCTaGCGCTCGCCTGGGATCAGA +
Preference number: 4 (lower is better)
Translates to: CGHRGGRVGGHRKPGRPSVPSPA*RSPGIR
Trigger: TCTGATCCCAGGCGAGCGTCAGGCTGGCGATGGCAC...AGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp GTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCCGACGCAAACGCTGTaGGCCCTGCGCCCTCCGAGC +
Preference number: 4 (lower is better)
Translates to: VGGHRKPGRPSWETKVYGPTQTL*ALRPPS
Trigger: GCTCGGAGGGCGCAGGGCGCACAGCGTTTGCGTCGG...CCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp GCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGATATGGCTGGTCTCACTaGGGCGGTGGCCCACGCCTC +
Preference number: 4 (lower is better)
Translates to: ASRRKGGWPPEARETFLGYGWSH*GGGPRL
Trigger: GAGGCGTGGGCCACCGCCGCAGTGAGACCAGCCATA...TCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp GTTGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTAGTCATCCACGATGCTaGGGCGGGGACCCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: VVGIEAEGWVATGSQGDLSHPRC*GGDPAA
Trigger: AGCAGCTGGGTCCCCGCCTCAGCATCGTGGATGACT...AAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp CGGAGACACGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCCAAGGTTTGCCCAGCAGACCCTaGGACACCACCTCGTCGAAG +
Preference number: 4 (lower is better)
Translates to: RRHVAAAPPHPSPSCSQGLPSRP*DTTSSK
Trigger: CTTCGACGAGGTGGTGTCGCAGGGTCTGCTGGGCAA...ACCTTGGCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp GTTGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTAGGAGGTGGTCCAGCTaGTGGCTGAAGGTCCTCCCC +
Preference number: 4 (lower is better)
Translates to: VVGIEAEGWVATGSQGDLRRWSS*WLKVLP
Trigger: GGGGAGGACCTTCAGCCAGCAGCTGGACCACCTCCT...AAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp CCGTTGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCAACTGCCAGAGTACCTaGTTGGCGGGTGTGTCCAGG +
Preference number: 4 (lower is better)
Translates to: PLWASRRKGGWPPEARETNCQST*LAGVSR
Trigger: CCTGGACACACCCGCCAAGCAGGTACTCTGGCAGTT...GGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAACGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp AGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGGGATTCCGAGCTaGTGGGAGAGGCCAGACCCC +
Preference number: 4 (lower is better)
Translates to: RRKGGWPPEARETFLGDQGGIPS*WERPDP
Trigger: GGGGTCTGGCCTCTCCCAGCAGCTCGGAATCCCACC...TTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp GTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGGGGAGGGCGCCCTGCTaGTGTCCAAGCTGGCGTAGG +
Preference number: 4 (lower is better)
Translates to: VGGHRKPGRPSWETKVYGGRAPC*CPSWRR
Trigger: CCTACGCCAGCTTGGACAGCAGCAGGGCGCCCTCCC...CCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCAC
66% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GGTAGCCGGAGACACGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCCACTGCCCTGCAACATaGACACCACCTTGTCGTGGG +
Preference number: 4 (lower is better)
Translates to: GSRRHVAAAPPHPSPSCSHCPAT*TPPCRG
Trigger: CCCACGACAAGGTGGTGTCCATGTTGCAGGGCAGTG...GCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCGGCTACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GGTAGCCGGAGACACGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCCTGAAGGTCCTCCCCTaGACTCGGATACTGGAAGGC +
Preference number: 4 (lower is better)
Translates to: GSRRHVAAAPPHPSPSCSLKVLP*TRILEG
Trigger: GCCTTCCAGTATCCGAGTCCAGGGGAGGACCTTCAG...GCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCGGCTACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGACAGGCTGGGGACTGGTaGAGAGGCCCGGGATTTGGA +
Preference number: 4 (lower is better)
Translates to: ASRRKGGWPPEARETFLGQAGDW*RGPGFG
Trigger: TCCAAATCCCGGGCCTCTCCACCAGTCCCCAGCCTG...TCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp TGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTCTAGGCTTGGGGTCATaGAAAGGCAGGGGCGGTGGC +
Preference number: 4 (lower is better)
Translates to: CGHRGGRVGGHRKPGRPSLGLGS*KGRGGG
Trigger: GCCACCGCCCCTGCCTTTCCATGACCCCAAGCCTAG...AGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp TGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCGTGCCATCGCCAGCCTaGCGCTCGCCTGGGATCAGA +
Preference number: 4 (lower is better)
Translates to: WVATGSQGDLLGRPRCMGVPSPA*RSPGIR
Trigger: TCTGATCCCAGGCGAGCGTCAGGCTGGCGATGGCAC...GCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp GGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCACCACTTCCTTCTTCCTaGAGGGCTCCGGGCCGGGCA +
Preference number: 4 (lower is better)
Translates to: GWPPEARETFLGDQGVWAPLPSS*RAPGRA
Trigger: TGCCCGGCCCGGAGCCCTTCAGGAAGAAGGAAGTGG...TGCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp AGCCGGAGACACGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCCAAAACTGCCAGAGTACCTaGTTGGCGGGTGTGTCCAGG +
Preference number: 4 (lower is better)
Translates to: SRRHVAAAPPHPSPSCSQNCQST*LAGVSR
Trigger: CCTGGACACACCCGCCAAGCAGGTACTCTGGCAGTT...TTGGCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp GTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGGGTGGGATTCCGAGCTaGTGGGAGAGGCCAGACCCC +
Preference number: 4 (lower is better)
Translates to: VGGHRKPGRPSWETKVYGGGIPS*WERPDP
Trigger: GGGGTCTGGCCTCTCCCAGCAGCTCGGAATCCCACC...CCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCAGGGATTCCGAGCTGCTaGGAGAGGCCAGACCCCCAG +
Preference number: 4 (lower is better)
Translates to: GWPPEARETFLGDQGVWAGIPSC*ERPDPQ
Trigger: CTGGGGGTCTGGCCTCTCCCAGCAGCTCGGAATCCC...TGCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp TGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCGATGGGGTCTGGGCTTaGGGGGCTGTCGGCGTGGAT +
Preference number: 4 (lower is better)
Translates to: WVATGSQGDLLGRPRCMGDGVWA*GAVGVD
Trigger: ATCCACGCCGACAGCCCCCCAAGCCCAGACCCCATC...GCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGGATGGGGTCTGGGCTTaGGGGGCTGTCGGCGTGGAT +
Preference number: 4 (lower is better)
Translates to: VGGHRKPGRPSWETKVYGDGVWA*GAVGVD
Trigger: ATCCACGCCGACAGCCCCCCAAGCCCAGACCCCATC...CCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp TGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCCGCCTCGGGATAGCATaGGGGGTGCACAGGGCACAG +
Preference number: 4 (lower is better)
Translates to: WVATGSQGDLLGRPRCMGRLGIA*GVHRAQ
Trigger: CTGTGCCCTGTGCACCCCCCATGCTATCCCGAGGCG...GCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CAACCGCAGCAAGCCAGCATCCACTCTGCAGTCTGCCCTCCGGTGGGACATTCCCAGCCAGGGGCACAGTaGGCAGGTCCTGGGCAAAGC +
Preference number: 4 (lower is better)
Translates to: QPQQASIHSAVCPPVGHSQPGAQ*AGPGQS
Trigger: GCTTTGCCCAGGACCTGCCCACTGTGCCCCTGGCTG...GGAATGTCCCACCGGAGGGCAGACTGCAGAGTGGATGCTGGCTTGCTGCGGTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp TGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCGAGGGGTTTGGTCAATaGCTGAGGGGGACCTCGGGG +
Preference number: 4 (lower is better)
Translates to: WVATGSQGDLLGRPRCMGEGFGQ*LRGTSG
Trigger: CCCCGAGGTCCCCCTCAGTCATTGACCAAACCCCTC...GCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp AAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCTGAGGTAGCCGGACCGACGCAAACGCTGTaGGCCCTGCGCCCTCCGAGC +
Preference number: 4 (lower is better)
Translates to: KVYGQKRAKQNSAAEVAGPTQTL*ALRPPS
Trigger: GCTCGGAGGGCGCAGGGCGCACAGCGTTTGCGTCGG...TCCGGCTACCTCAGCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp CCCTTCCTGCAGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCGGGCGCTCCTCGCTaGGGCTCCGACGCAAACGCT +
Preference number: 4 (lower is better)
Translates to: PFLQPRCMVKYPGPCDIPPGAPR*GSDANA
Trigger: AGCGTTTGCGTCGGAGCCGCAGCGAGGAGCGCCCGG...AGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCTGCAGGAAGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp ATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCAGCATGACCCCCAGGGCCAGTaGGACCGCCCAGCAGCGAGG +
Preference number: 4 (lower is better)
Translates to: MVKYPGPCDIPPWCSLQHDPQGQ*DRPAAR
Trigger: CCTCGCTGCTGGGCGGTCGCACTGGCCCTGGGGGTC...ATGCTGGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp CAGCATTTTATTCACCGTTGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGTATGGCTGGTCTCACTaGGGCGGTGGCCCACGCCTC +
Preference number: 4 (lower is better)
Translates to: QHFIHRCGHRGGRVGGHRYGWSH*GGGPRL
Trigger: GAGGCGTGGGCCACCGCCGCAGTGAGACCAGCCATA...CCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAACGGTGAATAAAATGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CGGAGACACGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCCAAGGTGACACCACCTTGTCGTaGGAGCAGTTCCTCATGTCC +
Preference number: 4 (lower is better)
Translates to: RRHVAAAPPHPSPSCSQGDTTLS*EQFLMS
Trigger: GGACATGAGGAACTGCTCCCACGACAAGGTGGTGTC...ACCTTGGCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CAGCATTTTATTCACCGTTGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGCCACCAGCGTGGGCATaGCGCCACTGCCCTGCAACA +
Preference number: 4 (lower is better)
Translates to: QHFIHRCGHRGGRVGGHRPPAWA*RHCPAT
Trigger: TGTTGCAGGGCAGTGGCGCCATGCCCACGCTGGTGG...CCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAACGGTGAATAAAATGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GGTAGCCGGAGACACGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCTCCCGTCCACTGTCTTaGTGGAGTTTAGCTCGGTCA +
Preference number: 4 (lower is better)
Translates to: GSRRHVAAAPPHPSPSCSSRPLS*WSLARS
Trigger: TGACCGAGCTAAACTCCACCAAGACAGTGGACGGGA...GCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCGGCTACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GGTAGCCGGAGACACGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCGGATGTGCAGAAAGGTaGACTTCCCGTCCACTGTCT +
Preference number: 4 (lower is better)
Translates to: GSRRHVAAAPPHPSPSCSGCAER*TSRPLS
Trigger: AGACAGTGGACGGGAAGTCCACCTTTCTGCACATCC...GCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCGGCTACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp GTTGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTGAGGATCCGGTCACCTaGCTTGAGGGAGGCATTTTC +
Preference number: 4 (lower is better)
Translates to: VVGIEAEGWVATGSQGDLEDPVT*LEGGIF
Trigger: GAAAATGCCTCCCTCAAGTCAGGTGACCGGATCCTC...AAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp GCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGAGGATCCGGTCACCTaGCTTGAGGGAGGCATTTTC +
Preference number: 4 (lower is better)
Translates to: ASRRKGGWPPEARETFLGEDPVT*LEGGIF
Trigger: GAAAATGCCTCCCTCAAGTCAGGTGACCGGATCCTC...TCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp CCGTTGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTCATGTCCAATCCATTaGGGAAGAGGATCCGGTCAC +
Preference number: 4 (lower is better)
Translates to: PLWASRRKGGWPPEARETSCPIH*GRGSGH
Trigger: GTGACCGGATCCTCTTCCTCAATGGATTGGACATGA...GGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAACGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp GGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCGGTCCAGCTGCTGGCTaGAGGTCCTCCCCTGGACTC +
Preference number: 4 (lower is better)
Translates to: GAWSSTLDPVTFLHGAASGPAAG*RSSPGL
Trigger: GAGTCCAGGGGAGGACCTTCAGCCAGCAGCTGGACC...GGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp TTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCAGCAGCTGCGCCAGATaGGCAGGCTCCAGGCGCCGG +
Preference number: 4 (lower is better)
Translates to: FLGDQGVWAKEGQAELGSSSCAR*AGSRRR
Trigger: CCGGCGCCTGGAGCCTGCTCATCTGGCGCAGCTGCT...GCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp TGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCGCCTCGCGGAAAGCCTaGTATCGCTGTTCCTCGTCG +
Preference number: 4 (lower is better)
Translates to: WVATGSQGDLLGRPRCMGASRKA*YRCSSS
Trigger: CGACGAGGAACAGCGATATCAGGCTTTCCGCGAGGC...GCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp TTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCACTGGTCCGGCTCACTaGGGCGACCCGGAGCCTCGC +
Preference number: 4 (lower is better)
Translates to: FLGDQGVWAKEGQAELGSTGPAH*GDPEPR
Trigger: GCGAGGCTCCGGGTCGCCTCAGTGAGCCGGACCAGT...GCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp TTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCCCGGGCGCTCCTCGCTaGGGCTCCGACGCAAACGCT +
Preference number: 4 (lower is better)
Translates to: FLGDQGVWAKEGQAELGSPGAPR*GSDANA
Trigger: AGCGTTTGCGTCGGAGCCGCAGCGAGGAGCGCCCGG...GCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp GTTGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTGGGGTCAGCTTCAGGTaGGCTAGGAGAATGGAGGTA +
Preference number: 4 (lower is better)
Translates to: VVGIEAEGWVATGSQGDLGVSFR*ARRMEV
Trigger: TACCTCCATTCTCCTAGCGCACCTGAAGCTGACCCC...AAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp GACCTTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGGCGTGGGCCATCCCCTaGCTGCAGGTCGCTGAGGGC +
Preference number: 4 (lower is better)
Translates to: DLLGRPRCMGKRGPSRTRAWAIP*LQVAEG
Trigger: GCCCTCAGCGACCTGCAGGCAGGGGATGGCCCACGC...CCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAAGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp AAGAGGGCCAAGCAGAACTCGGCAGCTGAGGTAGCCGGAGACACGTGGCTGCAGGGAGGAGTGAGGAGGTaGTCCAGCTGCTGGCTGAAG +
Preference number: 4 (lower is better)
Translates to: KRAKQNSAAEVAGDTWLQGGVRR*SSCWLK
Trigger: CTTCAGCCAGCAGCTGGACCACCTCCTCACTCCTCC...CTGCAGCCACGTGTCTCCGGCTACCTCAGCTGCCGAGTTCTGCTTGGCCCTCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp AGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCTGGTCTCCAGGCCCTaGGAGCGCAAGCTGCGACGG +
Preference number: 4 (lower is better)
Translates to: RCMVKYPGPCDIPPWCSLLVSRP*ERKLRR
Trigger: CCGTCGCAGCTTGCGCTCCCAGGGCCTGGAGACCAG...GAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CAGCATTTTATTCACCGTTGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGGACCAGGCTGGGGACTaGTGGAGAGGCCCGGGATTT +
Preference number: 4 (lower is better)
Translates to: QHFIHRCGHRGGRVGGHRDQAGD*WRGPGF
Trigger: AAATCCCGGGCCTCTCCACCAGTCCCCAGCCTGGTC...CCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAACGGTGAATAAAATGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCATGCTGCTGTCCAAGCTaGCGTAGGGGTGGGATTCCG +
Preference number: 4 (lower is better)
Translates to: GWPPEARETFLGDQGVWACCCPS*RRGGIP
Trigger: CGGAATCCCACCCCTACGCCAGCTTGGACAGCAGCA...TGCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp ATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACGCTGCTCCTCTCGTTaGTCACAAAGCTGCCCTGGT +
Preference number: 4 (lower is better)
Translates to: IEAEGWVATGSQGDLLGRRCSSR*SQSCPG
Trigger: ACCAGGGCAGCTTTGTGACCAACGAGAGGAGCAGCG...TCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp TACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCAGCATCGGTCTCCGGGGGCTGAGTGGAGGTaGGGGGATGTGGTCGGAGAT +
Preference number: 4 (lower is better)
Translates to: YPGPCDIPPWCSLQHRSPGAEWR*GDVVGD
Trigger: ATCTCCGACCACATCCCCCCACCTCCACTCAGCCCC...CGGAGACCGATGCTGGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp TGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCGGGGGTGGGACTGGATaGTTGATCTGGGTGAGGGGT +
Preference number: 4 (lower is better)
Translates to: WVATGSQGDLLGRPRCMGGGGTG*LIWVRG
Trigger: ACCCCTCACCCAGATCAACCATCCAGTCCCACCCCC...GCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCAGCATCGGCGCCTCGGGATAGCATaGGGGGTGCACAGGGCACAG +
Preference number: 4 (lower is better)
Translates to: VKYPGPCDIPPWCSLQHRRLGIA*GVHRAQ
Trigger: CTGTGCCCTGTGCACCCCCCATGCTATCCCGAGGCG...CCGATGCTGGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCTGGTCTCACTGCGGCGGTaGCCCACGCCTCGGGATAGC +
Preference number: 4 (lower is better)
Translates to: LGRPRCMGKRGPSRTRQLVSLRR*PTPRDS
Trigger: GCTATCCCGAGGCGTGGGCCACCGCCGCAGTGAGAC...CAGCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp AAGAGGGCCAAGCAGAACTCGGCAGCTGAGGTAGCCGGAGACACGTGGCTGCAGGGCTTCGGAGGTTTCTaGGTGCCGAAGTGGAGCTCC +
Preference number: 4 (lower is better)
Translates to: KRAKQNSAAEVAGDTWLQGFGGF*VPKWSS
Trigger: GGAGCTCCACTTCGGCACCCAGAAACCTCCGAAGCC...CTGCAGCCACGTGTCTCCGGCTACCTCAGCTGCCGAGTTCTGCTTGGCCCTCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CTCCCACCGAGCCACAGACAACCGCAGCAAGCCAGCATCCACTCTGCAGTCTGCGGCTTCGGAGGTTTCTaGGTGCCGAAGTGGAGCTCC +
Preference number: 4 (lower is better)
Translates to: LPPSHRQPQQASIHSAVCGFGGF*VPKWSS
Trigger: GGAGCTCCACTTCGGCACCCAGAAACCTCCGAAGCC...GCAGACTGCAGAGTGGATGCTGGCTTGCTGCGGTTGTCTGTGGCTCGGTGGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GGTAGCCGGAGACACGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCGCTGGCTTAGCGATTTaGCAAGGATGTGCAGAAAGG +
Preference number: 4 (lower is better)
Translates to: GSRRHVAAAPPHPSPSCSAGLAI*QGCAER
Trigger: CCTTTCTGCACATCCTTGCCAAATCGCTAAGCCAGC...GCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCGGCTACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp TACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCAGCATCGGTCTCCGCACGCGATCTTCTCCTaGCACAGCTCCTGCTCCTCG +
Preference number: 4 (lower is better)
Translates to: YPGPCDIPPWCSLQHRSPHAIFS*HSSCSS
Trigger: CGAGGAGCAGGAGCTGTGTCAGGAGAAGATCGCGTG...CGGAGACCGATGCTGGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp AGCCTCCAGCATCGGTCTCCGTGCTCAGACTGCAGAAGATGCTTGGTGGCAGCTGAGGGGTTTGGTCAATaGCTGAGGGGGACCTCGGGG +
Preference number: 4 (lower is better)
Translates to: SLQHRSPCSDCRRCLVAAEGFGQ*LRGTSG
Trigger: CCCCGAGGTCCCCCTCAGTCATTGACCAAACCCCTC...AGCTGCCACCAAGCATCTTCTGCAGTCTGAGCACGGAGACCGATGCTGGAGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp AGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAACCAGATGGTGCCTTCTaGGTTCTCCACCTGTTCCCA +
Preference number: 4 (lower is better)
Translates to: RRKGGWPPEARETFLGDQPDGAF*VLHLFP
Trigger: TGGGAACAGGTGGAGAACTCAGAAGGCACCATCTGG...TTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp CCGTTGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTCGAAGCGCGCCCGATaGTTTTTGGGAATAAAGATC +
Preference number: 4 (lower is better)
Translates to: PLWASRRKGGWPPEARETSKRAR*FLGIKI
Trigger: GATCTTTATTCCCAAAAAGCATCGGGCGCGCTTCGA...GGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAACGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp GGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCAATTGCCCAGCAGACCCTaGGACACCACCTCGTCGAAG +
Preference number: 4 (lower is better)
Translates to: GGHRKPGRPSWETKVYGQLPSRP*DTTSSK
Trigger: CTTCGACGAGGTGGTGTCGCAGGGTCTGCTGGGCAA...TTGCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp ACCGAGCCACAGACAACCGCAGCAAGCCAGCATCCACTCTGCAGTCTGCCCTCCATGGCGCCACTGCCCTaGAACATGGACACCACCTTG +
Preference number: 4 (lower is better)
Translates to: TEPQTTAASQHPLCSLPSMAPLP*NMDTTL
Trigger: CAAGGTGGTGTCCATGTTGCAGGGCAGTGGCGCCAT...GGAGGGCAGACTGCAGAGTGGATGCTGGCTTGCTGCGGTTGTCTGTGGCTCGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp AAGAGGGCCAAGCAGAACTCGGCAGCTGAGGTAGCCGGAGACACGTGGCTGCAGATATCCGCCACCCACTaGAGCGAGGTGAGAGCTGAC +
Preference number: 4 (lower is better)
Translates to: KRAKQNSAAEVAGDTWLQISATH*SEVRAD
Trigger: GTCAGCTCTCACCTCGCTGCAGTGGGTGGCGGATAT...CTGCAGCCACGTGTCTCCGGCTACCTCAGCTGCCGAGTTCTGCTTGGCCCTCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp GACCTTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGGGGAGGGCGCCCTGCTaGTGTCCAAGCTGGCGTAGG +
Preference number: 4 (lower is better)
Translates to: DLLGRPRCMGKRGPSRTRGRAPC*CPSWRR
Trigger: CCTACGCCAGCTTGGACAGCAGCAGGGCGCCCTCCC...CCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAAGGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp AGCCGGAGACACGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCCAAGATTTGGCAAGGATGTaGAGAAAGGTGGACTTCCCG +
Preference number: 4 (lower is better)
Translates to: SRRHVAAAPPHPSPSCSQDLARM*RKVDFP
Trigger: CGGGAAGTCCACCTTTCTGCACATCCTTGCCAAATC...TTGGCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp TGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTAGGAGCTCAGGGAAGTaGTGGCTTAGCGATTTGGCA +
Preference number: 4 (lower is better)
Translates to: CGHRGGRVGGHRKPGRPSRSSGK*WLSDLA
Trigger: TGCCAAATCGCTAAGCCAGCACTTCCCTGAGCTCCT...AGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp TGCTCCCACCGAGCCACAGACAACCGCAGCAAGCCAGCATCCACTCTGCAGTCTCACTGGAAGGGGCCATaGTCTGGCAGGCCACCTGAA +
Preference number: 4 (lower is better)
Translates to: CSHRATDNRSKPASTLQSHWKGP*SGRPPE
Trigger: TTCAGGTGGCCTGCCAGAGCATGGCCCCTTCCAGTG...AGACTGCAGAGTGGATGCTGGCTTGCTGCGGTTGTCTGTGGCTCGGTGGGAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCTGCCTCTACCACCAGCGTaGGCATGGCGCCACTGCCCT +
Preference number: 4 (lower is better)
Translates to: LGRPRCMGKRGPSRTRQLPLPPA*AWRHCP
Trigger: AGGGCAGTGGCGCCATGCCCACGCTGGTGGTAGAGG...CAGCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp TGCTCCCACCGAGCCACAGACAACCGCAGCAAGCCAGCATCCACTCTGCAGTCTTGCTGCTGTCCAAGCTaGCGTAGGGGTGGGATTCCG +
Preference number: 4 (lower is better)
Translates to: CSHRATDNRSKPASTLQSCCCPS*RRGGIP
Trigger: CGGAATCCCACCCCTACGCCAGCTTGGACAGCAGCA...AGACTGCAGAGTGGATGCTGGCTTGCTGCGGTTGTCTGTGGCTCGGTGGGAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp ATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGATTCTGGGTGCCGAAGTaGAGCTCCAGGTCGAGGTAT +
Preference number: 4 (lower is better)
Translates to: IEAEGWVATGSQGDLLGRFWVPK*SSRSRY
Trigger: ATACCTCGACCTGGAGCTCCACTTCGGCACCCAGAA...TCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CCGTTGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCCAAACTCCAGGATCTTaGCGAGTTTCCGGCTGTTTT +
Preference number: 4 (lower is better)
Translates to: PLWASRRKGGWPPEARETQTPGS*RVSGCF
Trigger: AAAACAGCCGGAAACTCGCCAAGATCCTGGAGTTTG...GGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAACGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GTTGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTTCCCGTCCACTGTCTTaGTGGAGTTTAGCTCGGTCA +
Preference number: 4 (lower is better)
Translates to: VVGIEAEGWVATGSQGDLSRPLS*WSLARS
Trigger: TGACCGAGCTAAACTCCACCAAGACAGTGGACGGGA...AAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp AGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCAGCCAGGGGCACAGTaGGCAGGTCCTGGGCAAAGC +
Preference number: 4 (lower is better)
Translates to: RCMVKYPGPCDIPPWCSLQPGAQ*AGPGQS
Trigger: GCTTTGCCCAGGACCTGCCCACTGTGCCCCTGGCTG...GAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp ACCGAGCCACAGACAACCGCAGCAAGCCAGCATCCACTCTGCAGTCTGCCCTCCCAAACCTGTCCTCACTaGAAGGGGCCATGCTCTGGC +
Preference number: 4 (lower is better)
Translates to: TEPQTTAASQHPLCSLPSQTCPH*KGPCSG
Trigger: GCCAGAGCATGGCCCCTTCCAGTGAGGACAGGTTTG...GGAGGGCAGACTGCAGAGTGGATGCTGGCTTGCTGCGGTTGTCTGTGGCTCGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCATCCCTAGCTCCTCCATaGCCTCTCGCTGCAGACCAT +
Preference number: 4 (lower is better)
Translates to: GWPPEARETFLGDQGVWASLAPP*PLAADH
Trigger: ATGGTCTGCAGCGAGAGGCCATGGAGGAGCTAGGGA...TGCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp GACCTTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGAGCGCTCGGGAGGAGTaGGGAGGTGGTCCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: DLLGRPRCMGKRGPSRTRSAREE*GGGPAA
Trigger: AGCAGCTGGACCACCTCCTCACTCCTCCCGAGCGCT...CCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAAGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp CTCCCACCGAGCCACAGACAACCGCAGCAAGCCAGCATCCACTCTGCAGTCTGCTGGCTCGAGGTCCAGTaGGGATTCAGGTTCCGTCAT +
Preference number: 4 (lower is better)
Translates to: LPPSHRQPQQASIHSAVCWLEVQ*GFRFRH
Trigger: ATGACGGAACCTGAATCCTCACTGGACCTCGAGCCA...GCAGACTGCAGAGTGGATGCTGGCTTGCTGCGGTTGTCTGTGGCTCGGTGGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp CCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCGGGGTTCCATGCTCATaGGCACTTGCCGCAGCTCGC +
Preference number: 4 (lower is better)
Translates to: PRCMVKYPGPCDIPPWCSGVPCS*ALAAAR
Trigger: GCGAGCTGCGGCAAGTGCTCATGAGCATGGAACCCC...GCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp AGCCTCCAGCATCGGTCTCCGTGCTCAGACTGCAGAAGATGCTTGGTGGCAGCTGCCTCGCGGAAAGCCTaGTATCGCTGTTCCTCGTCG +
Preference number: 4 (lower is better)
Translates to: SLQHRSPCSDCRRCLVAAASRKA*YRCSSS
Trigger: CGACGAGGAACAGCGATATCAGGCTTTCCGCGAGGC...AGCTGCCACCAAGCATCTTCTGCAGTCTGAGCACGGAGACCGATGCTGGAGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp GGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCAACTGCCTGCAGGTCGCTaGGGGCTCTCTCAAATTTGC +
Preference number: 4 (lower is better)
Translates to: GGHRKPGRPSWETKVYGQLPAGR*GLSQIC
Trigger: GCAAATTTGAGAGAGCCCTCAGCGACCTGCAGGCAG...TTGCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp AGCCTCCAGCATCGGTCTCCGTGCTCAGACTGCAGAAGATGCTTGGTGGCAGCTTGGGCATGGCGCCACTaGCCTGCAACATGGACACCA +
Preference number: 4 (lower is better)
Translates to: SLQHRSPCSDCRRCLVAAWAWRH*PATWTP
Trigger: TGGTGTCCATGTTGCAGGGCAGTGGCGCCATGCCCA...AGCTGCCACCAAGCATCTTCTGCAGTCTGAGCACGGAGACCGATGCTGGAGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp TGCTCCCACCGAGCCACAGACAACCGCAGCAAGCCAGCATCCACTCTGCAGTCTATATCCGCCACCCACTaGAGCGAGGTGAGAGCTGAC +
Preference number: 4 (lower is better)
Translates to: CSHRATDNRSKPASTLQSISATH*SEVRAD
Trigger: GTCAGCTCTCACCTCGCTGCAGTGGGTGGCGGATAT...AGACTGCAGAGTGGATGCTGGCTTGCTGCGGTTGTCTGTGGCTCGGTGGGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp CCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCAGGAGGTGGTCCAGCTaGTGGCTGAAGGTCCTCCCC +
Preference number: 4 (lower is better)
Translates to: PRCMVKYPGPCDIPPWCSRRWSS*WLKVLP
Trigger: GGGGAGGACCTTCAGCCAGCAGCTGGACCACCTCCT...GCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp TACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCAGCATCGGTCTCCGTCGGAGGTTTCTGGGTaGCGAAGTGGAGCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: YPGPCDIPPWCSLQHRSPSEVSG*RSGAPG
Trigger: ACCTGGAGCTCCACTTCGGCACCCAGAAACCTCCGA...CGGAGACCGATGCTGGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CTCCCACCGAGCCACAGACAACCGCAGCAAGCCAGCATCCACTCTGCAGTCTGCGACACCACCTTGTCGTaGGAGCAGTTCCTCATGTCC +
Preference number: 4 (lower is better)
Translates to: LPPSHRQPQQASIHSAVCDTTLS*EQFLMS
Trigger: GGACATGAGGAACTGCTCCCACGACAAGGTGGTGTC...GCAGACTGCAGAGTGGATGCTGGCTTGCTGCGGTTGTCTGTGGCTCGGTGGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CCCTTCCTGCAGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTAGGTGGTCCAGCTGCTaGCTGAAGGTCCTCCCCTGG +
Preference number: 4 (lower is better)
Translates to: PFLQPRCMVKYPGPCDIPRWSSC*LKVLPW
Trigger: CCAGGGGAGGACCTTCAGCCAGCAGCTGGACCACCT...AGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCTGCAGGAAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp AAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCTGAGGTAGCCGGACAGGCTGGGGACTGGTaGAGAGGCCCGGGATTTGGA +
Preference number: 4 (lower is better)
Translates to: KVYGQKRAKQNSAAEVAGQAGDW*RGPGFG
Trigger: TCCAAATCCCGGGCCTCTCCACCAGTCCCCAGCCTG...TCCGGCTACCTCAGCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp AAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCTGAGGTAGCCGGAGACCAGGCTGGGGACTaGTGGAGAGGCCCGGGATTT +
Preference number: 4 (lower is better)
Translates to: KVYGQKRAKQNSAAEVAGDQAGD*WRGPGF
Trigger: AAATCCCGGGCCTCTCCACCAGTCCCCAGCCTGGTC...TCCGGCTACCTCAGCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CCCTTCCTGCAGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCTAGGCTTGGGGTCATaGAAAGGCAGGGGCGGTGGC +
Preference number: 4 (lower is better)
Translates to: PFLQPRCMVKYPGPCDIPLGLGS*KGRGGG
Trigger: GCCACCGCCCCTGCCTTTCCATGACCCCAAGCCTAG...AGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCTGCAGGAAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp AGCCGGAGACACGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCCAACAAACTCCAGGATCTTaGCGAGTTTCCGGCTGTTTT +
Preference number: 4 (lower is better)
Translates to: SRRHVAAAPPHPSPSCSQQTPGS*RVSGCF
Trigger: AAAACAGCCGGAAACTCGCCAAGATCCTGGAGTTTG...TTGGCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GCCAAGCAGAACTCGGCAGCTGAGGTAGCCGGAGACACGTGGCTGCAGCCCCACGCTGGCTTAGCGATTTaGCAAGGATGTGCAGAAAGG +
Preference number: 4 (lower is better)
Translates to: AKQNSAAEVAGDTWLQPHAGLAI*QGCAER
Trigger: CCTTTCTGCACATCCTTGCCAAATCGCTAAGCCAGC...GTGGGGCTGCAGCCACGTGTCTCCGGCTACCTCAGCTGCCGAGTTCTGCTTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCAGCATCGGCTCGCTGGTTCACTTTaGCAGCCAGGGGCACAGTGG +
Preference number: 4 (lower is better)
Translates to: VKYPGPCDIPPWCSLQHRLAGSL*QPGAQW
Trigger: CCACTGTGCCCCTGGCTGCCAAAGTGAACCAGCGAG...CCGATGCTGGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp TACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCAGCATCGGTCTCCGTCCCTAGCTCCTCCATaGCCTCTCGCTGCAGACCAT +
Preference number: 4 (lower is better)
Translates to: YPGPCDIPPWCSLQHRSPSLAPP*PLAADH
Trigger: ATGGTCTGCAGCGAGAGGCCATGGAGGAGCTAGGGA...CGGAGACCGATGCTGGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
3UTR CAA 72 bp AAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTaGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAA +
Preference number: 4 (lower is better)
Translates to: KGGWPPEARETF*GDQGVWAKEGQ
Trigger: TTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp AAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCTGAGGTAGCCGGACACGCGATCTTCTCCTaGCACAGCTCCTGCTCCTCG +
Preference number: 4 (lower is better)
Translates to: KVYGQKRAKQNSAAEVAGHAIFS*HSSCSS
Trigger: CGAGGAGCAGGAGCTGTGTCAGGAGAAGATCGCGTG...TCCGGCTACCTCAGCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp AGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAAGTCATCCACGATGCTaGGGCGGGGACCCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: SQGAWSSTLDPVTFLHGASHPRC*GGDPAA
Trigger: AGCAGCTGGGTCCCCGCCTCAGCATCGTGGATGACT...TGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp AGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGGGGTTCCATGCTCATaGGCACTTGCCGCAGCTCGC +
Preference number: 4 (lower is better)
Translates to: SQGAWSSTLDPVTFLHGAGVPCS*ALAAAR
Trigger: GCGAGCTGCGGCAAGTGCTCATGAGCATGGAACCCC...TGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp GGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCATGGGCTGTCCATCGTTaGGATAGTTACCCATGGCCA +
Preference number: 4 (lower is better)
Translates to: GWPPEARETFLGDQGVWAWAVHR*DSYPWP
Trigger: TGGCCATGGGTAACTATCTCAACGATGGACAGCCCA...TGCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp ACCGAGCCACAGACAACCGCAGCAAGCCAGCATCCACTCTGCAGTCTGCCCTCCTGGGCTGTCCATCGTTaGGATAGTTACCCATGGCCA +
Preference number: 4 (lower is better)
Translates to: TEPQTTAASQHPLCSLPSWAVHR*DSYPWP
Trigger: TGGCCATGGGTAACTATCTCAACGATGGACAGCCCA...GGAGGGCAGACTGCAGAGTGGATGCTGGCTTGCTGCGGTTGTCTGTGGCTCGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp GGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCACCAGAAAGGAAGCCATaGCCACAGCAAACCTGTCCT +
Preference number: 4 (lower is better)
Translates to: GWPPEARETFLGDQGVWAPERKP*PQQTCP
Trigger: AGGACAGGTTTGCTGTGGTCATGGCTTCCTTTCTGG...TGCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp TTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCGAGCACGGCACAGCTTaGCCAGCAGACCCTGCGACA +
Preference number: 4 (lower is better)
Translates to: FLGDQGVWAKEGQAELGSEHGTA*PADPAT
Trigger: TGTCGCAGGGTCTGCTGGGCAAGCTGTGCCGTGCTC...GCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp GTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCGTTGGTCACAAAGCTaGCCTGGTCATCATGGAAGC +
Preference number: 4 (lower is better)
Translates to: VGGHRKPGRPSWETKVYGRWSQS*PGHHGS
Trigger: GCTTCCATGATGACCAGGGCAGCTTTGTGACCAACG...CCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp GCCAAGCAGAACTCGGCAGCTGAGGTAGCCGGAGACACGTGGCTGCAGCCCCACATAAAGATCCTAAAGTaGCGAGAGAAGCCCTGGTCC +
Preference number: 4 (lower is better)
Translates to: AKQNSAAEVAGDTWLQPHIKILK*REKPWS
Trigger: GGACCAGGGCTTCTCTCGGCACTTTAGGATCTTTAT...GTGGGGCTGCAGCCACGTGTCTCCGGCTACCTCAGCTGCCGAGTTCTGCTTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp TTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCAGGTGGTCCAGCTGCTaGCTGAAGGTCCTCCCCTGG +
Preference number: 4 (lower is better)
Translates to: FLGDQGVWAKEGQAELGSRWSSC*LKVLPW
Trigger: CCAGGGGAGGACCTTCAGCCAGCAGCTGGACCACCT...GCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCCGCTGCTCCTCTCGTTaGTCACAAAGCTGCCCTGGT +
Preference number: 4 (lower is better)
Translates to: GAWSSTLDPVTFLHGAASRCSSR*SQSCPG
Trigger: ACCAGGGCAGCTTTGTGACCAACGAGAGGAGCAGCG...GGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CCCTTCCTGCAGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTGGGGGTGGGACTGGATaGTTGATCTGGGTGAGGGGT +
Preference number: 4 (lower is better)
Translates to: PFLQPRCMVKYPGPCDIPGGGTG*LIWVRG
Trigger: ACCCCTCACCCAGATCAACCATCCAGTCCCACCCCC...AGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCTGCAGGAAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCGCTTGACGCTCATATaGCTGGTCTCACTGCGGCGG +
Preference number: 4 (lower is better)
Translates to: PRCMVKYPGPCDIPPWCSRLTLI*LVSLRR
Trigger: CCGCCGCAGTGAGACCAGCCATATGAGCGTCAAGCG...GCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCAAGCTGACCCCAGATaGTGCCTTCTGAGTTCTCCA +
Preference number: 4 (lower is better)
Translates to: VGGHRKPGRPSWETKVYGQADPR*CLLSSP
Trigger: TGGAGAACTCAGAAGGCACCATCTGGGGTCAGCTTG...CCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCCAAACCTGTCCTCACTaGAAGGGGCCATGCTCTGGC +
Preference number: 4 (lower is better)
Translates to: GAWSSTLDPVTFLHGAASQTCPH*KGPCSG
Trigger: GCCAGAGCATGGCCCCTTCCAGTGAGGACAGGTTTG...GGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp CTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCTGATGGCGCCACTGCCCTaGAACATGGACACCACCTTG +
Preference number: 4 (lower is better)
Translates to: LGRPRCMGKRGPSRTRQLMAPLP*NMDTTL
Trigger: CAAGGTGGTGTCCATGTTGCAGGGCAGTGGCGCCAT...CAGCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp GACCTTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGTGGGCATGGCGCCACTaGCCTGCAACATGGACACCA +
Preference number: 4 (lower is better)
Translates to: DLLGRPRCMGKRGPSRTRWAWRH*PATWTP
Trigger: TGGTGTCCATGTTGCAGGGCAGTGGCGCCATGCCCA...CCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAAGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp CTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCTGTCGGAGGTTTCTGGGTaGCGAAGTGGAGCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: LGRPRCMGKRGPSRTRQLSEVSG*RSGAPG
Trigger: ACCTGGAGCTCCACTTCGGCACCCAGAAACCTCCGA...CAGCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp GGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCGGGGTCAGCTTCAGGTaGGCTAGGAGAATGGAGGTA +
Preference number: 4 (lower is better)
Translates to: GAWSSTLDPVTFLHGAASGVSFR*ARRMEV
Trigger: TACCTCCATTCTCCTAGCGCACCTGAAGCTGACCCC...GGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp TTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCCACTGGAAGGGGCCATaGTCTGGCAGGCCACCTGAA +
Preference number: 4 (lower is better)
Translates to: FLGDQGVWAKEGQAELGSHWKGP*SGRPPE
Trigger: TTCAGGTGGCCTGCCAGAGCATGGCCCCTTCCAGTG...GCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CTGCAGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGCACTGCCCTGCAACATaGACACCACCTTGTCGTGGG +
Preference number: 4 (lower is better)
Translates to: LQPRCMVKYPGPCDIPPWHCPAT*TPPCRG
Trigger: CCCACGACAAGGTGGTGTCCATGTTGCAGGGCAGTG...CCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCTGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp ATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCAGCATGGAGGAGTGAGGAGGTaGTCCAGCTGCTGGCTGAAG +
Preference number: 4 (lower is better)
Translates to: MVKYPGPCDIPPWCSLQHGGVRR*SSCWLK
Trigger: CTTCAGCCAGCAGCTGGACCACCTCCTCACTCCTCC...ATGCTGGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCGAGAGGCCCGGGATTTaGACATGGTCCCTATCTTCC +
Preference number: 4 (lower is better)
Translates to: GAWSSTLDPVTFLHGAASERPGI*TWSLSS
Trigger: GGAAGATAGGGACCATGTCCAAATCCCGGGCCTCTC...GGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp AAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCTGAGGTAGCCGGAATCTGCAGGACGAACTaGTCCGGCTCACTGAGGCGA +
Preference number: 4 (lower is better)
Translates to: KVYGQKRAKQNSAAEVAGICRTN*SGSLRR
Trigger: TCGCCTCAGTGAGCCGGACCAGTTCGTCCTGCAGAT...TCCGGCTACCTCAGCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp TACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCAGCATCGGTCTCCGGGATGTGCAGAAAGGTaGACTTCCCGTCCACTGTCT +
Preference number: 4 (lower is better)
Translates to: YPGPCDIPPWCSLQHRSPGCAER*TSRPLS
Trigger: AGACAGTGGACGGGAAGTCCACCTTTCTGCACATCC...CGGAGACCGATGCTGGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp TACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCAGCATCGGTCTCCGAGCTCAGGGAAGTGCTaGCTTAGCGATTTGGCAAGG +
Preference number: 4 (lower is better)
Translates to: YPGPCDIPPWCSLQHRSPSSGKC*LSDLAR
Trigger: CCTTGCCAAATCGCTAAGCCAGCACTTCCCTGAGCT...CGGAGACCGATGCTGGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp GACCTTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCTCGCTGGTTCACTTTaGCAGCCAGGGGCACAGTGG +
Preference number: 4 (lower is better)
Translates to: DLLGRPRCMGKRGPSRTRLAGSL*QPGAQW
Trigger: CCACTGTGCCCCTGGCTGCCAAAGTGAACCAGCGAG...CCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAAGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp CTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCTGTGGCTCGAGGTCCAGTaGGGATTCAGGTTCCGTCAT +
Preference number: 4 (lower is better)
Translates to: LGRPRCMGKRGPSRTRQLWLEVQ*GFRFRH
Trigger: ATGACGGAACCTGAATCCTCACTGGACCTCGAGCCA...CAGCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp GGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCAATCCCTATCTTCCCTTTaGAGCTGCTGTTCAGTCGAG +
Preference number: 4 (lower is better)
Translates to: GGHRKPGRPSWETKVYGQSLSSL*SCCSVE
Trigger: CTCGACTGAACAGCAGCTTCAAAGGGAAGATAGGGA...TTGCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp ATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCAGCATCTGCCTGCAGGTCGCTaGGGGCTCTCTCAAATTTGC +
Preference number: 4 (lower is better)
Translates to: MVKYPGPCDIPPWCSLQHLPAGR*GLSQIC
Trigger: GCAAATTTGAGAGAGCCCTCAGCGACCTGCAGGCAG...ATGCTGGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp GGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCCGTTGGTCACAAAGCTaGCCTGGTCATCATGGAAGC +
Preference number: 4 (lower is better)
Translates to: GAWSSTLDPVTFLHGAASRWSQS*PGHHGS
Trigger: GCTTCCATGATGACCAGGGCAGCTTTGTGACCAACG...GGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp TACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCAGCATCGGTCTCCGTCCTCTGTCTTCTCCTaGAAGGTAGCCTGGAAGTGT +
Preference number: 4 (lower is better)
Translates to: YPGPCDIPPWCSLQHRSPSSVFS*KVAWKC
Trigger: ACACTTCCAGGCTACCTTGCAGGAGAAGACAGAGGA...CGGAGACCGATGCTGGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp GGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCAAGATTTGGCAAGGATGTaGAGAAAGGTGGACTTCCCG +
Preference number: 4 (lower is better)
Translates to: GGHRKPGRPSWETKVYGQDLARM*RKVDFP
Trigger: CGGGAAGTCCACCTTTCTGCACATCCTTGCCAAATC...TTGCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp TTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCCTGAAGGTCCTCCCCTaGACTCGGATACTGGAAGGC +
Preference number: 4 (lower is better)
Translates to: FLGDQGVWAKEGQAELGSLKVLP*TRILEG
Trigger: GCCTTCCAGTATCCGAGTCCAGGGGAGGACCTTCAG...GCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp AGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAATCTGCAGGACGAACTaGTCCGGCTCACTGAGGCGA +
Preference number: 4 (lower is better)
Translates to: SQGAWSSTLDPVTFLHGAICRTN*SGSLRR
Trigger: TCGCCTCAGTGAGCCGGACCAGTTCGTCCTGCAGAT...TGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp GACCTTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCCAGATGGTGCCTTCTaGGTTCTCCACCTGTTCCCA +
Preference number: 4 (lower is better)
Translates to: DLLGRPRCMGKRGPSRTRPDGAF*VLHLFP
Trigger: TGGGAACAGGTGGAGAACTCAGAAGGCACCATCTGG...CCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAAGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp CTGCAGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGCCAGAAAGGAAGCCATaGCCACAGCAAACCTGTCCT +
Preference number: 4 (lower is better)
Translates to: LQPRCMVKYPGPCDIPPWPERKP*PQQTCP
Trigger: AGGACAGGTTTGCTGTGGTCATGGCTTCCTTTCTGG...CCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCTGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp TGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTTTGCTCATGAATTCTaGAAAGATGCCAAAGAAGGC +
Preference number: 4 (lower is better)
Translates to: CGHRGGRVGGHRKPGRPSFAHEF*KDAKEG
Trigger: GCCTTCTTTGGCATCTTTTCAGAATTCATGAGCAAA...AGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp TTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCGAGAGGCCCGGGATTTaGACATGGTCCCTATCTTCC +
Preference number: 4 (lower is better)
Translates to: FLGDQGVWAKEGQAELGSERPGI*TWSLSS
Trigger: GGAAGATAGGGACCATGTCCAAATCCCGGGCCTCTC...GCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp AGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCAAGCTGACCCCAGATaGTGCCTTCTGAGTTCTCCA +
Preference number: 4 (lower is better)
Translates to: RCMVKYPGPCDIPPWCSLQADPR*CLLSSP
Trigger: TGGAGAACTCAGAAGGCACCATCTGGGGTCAGCTTG...GAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp AGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCATTCTGGGTGCCGAAGTaGAGCTCCAGGTCGAGGTAT +
Preference number: 4 (lower is better)
Translates to: SQGAWSSTLDPVTFLHGAFWVPK*SSRSRY
Trigger: ATACCTCGACCTGGAGCTCCACTTCGGCACCCAGAA...TGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp CCCTTCCTGCAGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCGTCCACTGTCTTGGTaGAGTTTAGCTCGGTCAGGA +
Preference number: 4 (lower is better)
Translates to: PFLQPRCMVKYPGPCDIPRPLSW*SLARSG
Trigger: TCCTGACCGAGCTAAACTCCACCAAGACAGTGGACG...AGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCTGCAGGAAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp AAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCTGAGGTAGCCGGAAGCTCAGGGAAGTGCTaGCTTAGCGATTTGGCAAGG +
Preference number: 4 (lower is better)
Translates to: KVYGQKRAKQNSAAEVAGSSGKC*LSDLAR
Trigger: CCTTGCCAAATCGCTAAGCCAGCACTTCCCTGAGCT...TCCGGCTACCTCAGCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp AGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCTCATGTCCAATCCATTaGGGAAGAGGATCCGGTCAC +
Preference number: 4 (lower is better)
Translates to: RCMVKYPGPCDIPPWCSLSCPIH*GRGSGH
Trigger: GTGACCGGATCCTCTTCCTCAATGGATTGGACATGA...GAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp CTGCAGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTCCCTATCTTCCCTTTaGAGCTGCTGTTCAGTCGAG +
Preference number: 4 (lower is better)
Translates to: LQPRCMVKYPGPCDIPPWSLSSL*SCCSVE
Trigger: CTCGACTGAACAGCAGCTTCAAAGGGAAGATAGGGA...CCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCTGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp CTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCTGTCCTCTGTCTTCTCCTaGAAGGTAGCCTGGAAGTGT +
Preference number: 4 (lower is better)
Translates to: LGRPRCMGKRGPSRTRQLSSVFS*KVAWKC
Trigger: ACACTTCCAGGCTACCTTGCAGGAGAAGACAGAGGA...CAGCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp AGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAAGGAGCTCAGGGAAGTaGTGGCTTAGCGATTTGGCA +
Preference number: 4 (lower is better)
Translates to: SQGAWSSTLDPVTFLHGARSSGK*WLSDLA
Trigger: TGCCAAATCGCTAAGCCAGCACTTCCCTGAGCTCCT...TGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CCA 90 bp TTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCCGTCCACTGTCTTGGTaGAGTTTAGCTCGGTCAGGA +
Preference number: 4 (lower is better)
Translates to: FLGDQGVWAKEGQAELGSRPLSW*SLARSG
Trigger: TCCTGACCGAGCTAAACTCCACCAAGACAGTGGACG...GCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp TTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCGGTAGACATCCACGATaGGGGTATCGATGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: FLGDQGVWAKEGQAELGSGRHPR*GYRCSC
Trigger: ACAGGAACATCGATACCCTCATCGTGGATGTCTACC...GCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp ATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCAGCATGGTAGACATCCACGATaGGGGTATCGATGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: MVKYPGPCDIPPWCSLQHGRHPR*GYRCSC
Trigger: ACAGGAACATCGATACCCTCATCGTGGATGTCTACC...ATGCTGGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp CCCTTCCTGCAGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTTCGAAGCGCGCCCGATaGTTTTTGGGAATAAAGATC +
Preference number: 4 (lower is better)
Translates to: PFLQPRCMVKYPGPCDIPSKRAR*FLGIKI
Trigger: GATCTTTATTCCCAAAAAGCATCGGGCGCGCTTCGA...AGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCTGCAGGAAGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp GGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCAAAGCCGAAACTCTTGTTaGCTTTATAAACTCGAACCG +
Preference number: 4 (lower is better)
Translates to: GGHRKPGRPSWETKVYGQSRNSC*LYKLEP
Trigger: CGGTTCGAGTTTATAAAGGCAACAAGAGTTTCGGCT...TTGCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR TCA 90 bp AGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCTTTGCTCATGAATTCTaGAAAGATGCCAAAGAAGGC +
Preference number: 4 (lower is better)
Translates to: RCMVKYPGPCDIPPWCSLFAHEF*KDAKEG
Trigger: GCCTTCTTTGGCATCTTTTCAGAATTCATGAGCAAA...GAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR GCA 90 bp AGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAAGCCGAAACTCTTGTTaGCTTTATAAACTCGAACCG +
Preference number: 4 (lower is better)
Translates to: SQGAWSSTLDPVTFLHGASRNSC*LYKLEP
Trigger: CGGTTCGAGTTTATAAAGGCAACAAGAGTTTCGGCT...TGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS CCA 90 bp AGGGCCAGTGCGACCGCCCAGCAGCGAGGTTGCCTTCCGCGGGGGTaGCTCATCCGGACGGCGGGGAGCGGCGCTAGCGCGCGTGGACAC +
Preference number: 5 (lower is better)
Translates to: RASATAQQRGCLPRG*LIRTAGSGASARGH
Trigger: GTGTCCACGCGCGCTAGCGCCGCTCCCCGCCGTCCGGATGAGCCACCCCCGCGGAAGGCAACCTCGCTGCTGGGCGGTCGCACTGGCCCT
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 90 bp GAGGCGCTCCGGGCGCTCCTCGCTGCGGCTCCGACGCAAACGCTGTaGGCCCTGCGCCCTCCGAGCACGGCACAGCTTGCCCAGCAGACC +
Preference number: 5 (lower is better)
Translates to: EALRALLAAAPTQTL*ALRPPSTAQLAQQT
Trigger: GGTCTGCTGGGCAAGCTGTGCCGTGCTCGGAGGGCGCAGGGCGCACAGCGTTTGCGTCGGAGCCGCAGCGAGGAGCGCCCGGAGCGCCTC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 90 bp GGCTGTGGGGCCACCCTCGGGGCCTGGGAGCACACCGAGGCTGGGTaGCACTCGAGGGCAGCGCCGTGCCAAGCGCACGATGCGCTCTCG +
Preference number: 5 (lower is better)
Translates to: GCGATLGAWEHTEAG*HSRAAPCQAHDALS
Trigger: CGAGAGCGCATCGTGCGCTTGGCACGGCGCTGCCCTCGAGTGCCACCCAGCCTCGGTGTGCTCCCAGGCCCCGAGGGTGGCCCCACAGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS GCA 90 bp TCCGGGCGCTCCTCGCTGCGGCTCCGACGCAAACGCTGTGCGCCCTaGGCCCTCCGAGCACGGCACAGCTTGCCCAGCAGACCCTGCGAC +
Preference number: 5 (lower is better)
Translates to: SGRSSLRLRRKRCAP*ALRARHSLPSRPCD
Trigger: GTCGCAGGGTCTGCTGGGCAAGCTGTGCCGTGCTCGGAGGGCGCAGGGCGCACAGCGTTTGCGTCGGAGCCGCAGCGAGGAGCGCCCGGA
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 90 bp GCCTGGGAGCACACCGAGGCTGGGTGGCACTCGAGGGCAGCGCCGTaGCAAGCGCACGATGCGCTCTCGGCTCAGGCCACCCACAGCCAG +
Preference number: 5 (lower is better)
Translates to: AWEHTEAGWHSRAAP*QAHDALSAQATHSQ
Trigger: CTGGCTGTGGGTGGCCTGAGCCGAGAGCGCATCGTGCGCTTGGCACGGCGCTGCCCTCGAGTGCCACCCAGCCTCGGTGTGCTCCCAGGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS CCA 90 bp TCAAGGCTGTGGGGCCACCCTCGGGGCCTGGGAGCACACCGAGGCTaGGTGGCACTCGAGGGCAGCGCCGTGCCAAGCGCACGATGCGCT +
Preference number: 5 (lower is better)
Translates to: SRLWGHPRGLGAHRG*VALEGSAVPSARCA
Trigger: AGCGCATCGTGCGCTTGGCACGGCGCTGCCCTCGAGTGCCACCCAGCCTCGGTGTGCTCCCAGGCCCCGAGGGTGGCCCCACAGCCTTGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS GCA 90 bp CGAGGCTGGGTGGCACTCGAGGGCAGCGCCGTGCCAAGCGCACGATaGGCTCTCGGCTCAGGCCACCCACAGCCAGCCCCTCCACTTCCA +
Preference number: 5 (lower is better)
Translates to: RGWVALEGSAVPSAR*ALGSGHPQPAPPLP
Trigger: TGGAAGTGGAGGGGCTGGCTGTGGGTGGCCTGAGCCGAGAGCGCATCGTGCGCTTGGCACGGCGCTGCCCTCGAGTGCCACCCAGCCTCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS GCA 90 bp GACGCAAACGCTGTGCGCCCTGCGCCCTCCGAGCACGGCACAGCTTaGCCAGCAGACCCTGCGACACCACCTCGTCGAAGCGCGCCCGAT +
Preference number: 5 (lower is better)
Translates to: DANAVRPAPSEHGTA*PADPATPPRRSAPD
Trigger: ATCGGGCGCGCTTCGACGAGGTGGTGTCGCAGGGTCTGCTGGGCAAGCTGTGCCGTGCTCGGAGGGCGCAGGGCGCACAGCGTTTGCGTC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 90 bp CAGCGCATCCAGGAAGCGATCTGTGTCTCGGCTCCGGACTGGGCGTaGGAAGGCGAAGAGCTTCCGGCGACTGGGCGGCCGGATGGGGTC +
Preference number: 5 (lower is better)
Translates to: QRIQEAICVSAPDWA*EGEELPATGRPDGV
Trigger: GACCCCATCCGGCCGCCCAGTCGCCGGAAGCTCTTCGCCTTCTCACGCCCAGTCCGGAGCCGAGACACAGATCGCTTCCTGGATGCGCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 90 bp GCTGCGCCAGATGAGCAGGCTCCAGGCGCCGGGGTTCCATGCTCATaGGCACTTGCCGCAGCTCGCCAGGGGTCAGCTTCAGGTGCGCTA +
Preference number: 5 (lower is better)
Translates to: AAPDEQAPGAGVPCS*ALAAARQGSASGAL
Trigger: TAGCGCACCTGAAGCTGACCCCTGGCGAGCTGCGGCAAGTGCTCATGAGCATGGAACCCCGGCGCCTGGAGCCTGCTCATCTGGCGCAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 90 bp GCGCCCTGCTGCTGTCCAAGCTGGCGTAGGGGTGGGATTCCGAGCTaGTGGGAGAGGCCAGACCCCCAGAACACAGCGGGTCATAGCACG +
Preference number: 5 (lower is better)
Translates to: APCCCPSWRRGGIPS*WERPDPQNTAGHST
Trigger: CGTGCTATGACCCGCTGTGTTCTGGGGGTCTGGCCTCTCCCAGCAGCTCGGAATCCCACCCCTACGCCAGCTTGGACAGCAGCAGGGCGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 90 bp TGGGACCACCAGCCAAACGCAGCAGTTCGCGGCTCAGCGGGAGGCTaGGGCCAAATCGCCGGGTTAGCCAGGCTGCTGTCAAGGCTGTGG +
Preference number: 5 (lower is better)
Translates to: WDHQPNAAVRGSAGG*GQIAGLARLLSRLW
Trigger: CCACAGCCTTGACAGCAGCCTGGCTAACCCGGCGATTTGGCCGCAGCCTCCCGCTGAGCCGCGAACTGCTGCGTTTGGCTGGTGGTCCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS CCA 90 bp CCCTGCTGCTGTCCAAGCTGGCGTAGGGGTGGGATTCCGAGCTGCTaGGAGAGGCCAGACCCCCAGAACACAGCGGGTCATAGCACGGGG +
Preference number: 5 (lower is better)
Translates to: PCCCPSWRRGGIPSC*ERPDPQNTAGHSTG
Trigger: CCCCGTGCTATGACCCGCTGTGTTCTGGGGGTCTGGCCTCTCCCAGCAGCTCGGAATCCCACCCCTACGCCAGCTTGGACAGCAGCAGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp CGGAGACACGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCCAAGGTGTGCGGGAGCTAGGCTaGGGGTCATGGAAAGGCAGG +
Preference number: 5 (lower is better)
Translates to: RRHVAAAPPHPSPSCSQGVRELG*GSWKGR
Trigger: CCTGCCTTTCCATGACCCCAAGCCTAGCTCCCGCAC...ACCTTGGCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS CCA 90 bp CAGAACACAGCGGGTCATAGCACGGGGAAGGCAGGAGCCGGTCACTaGGCCAGGAGACTCCAGACAGGGTCCTGGGCCCTGATGTGCCGA +
Preference number: 5 (lower is better)
Translates to: QNTAGHSTGKAGAGH*ARRLQTGSWALMCR
Trigger: TCGGCACATCAGGGCCCAGGACCCTGTCTGGAGTCTCCTGGCCCAGTGACCGGCTCCTGCCTTCCCCGTGCTATGACCCGCTGTGTTCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 90 bp TGTTCCTCGTCGGCGTCAGGAGCGAAGAGCAGCAGCTGCGCCAGATaGGCAGGCTCCAGGCGCCGGGGTTCCATGCTCATGAGCACTTGC +
Preference number: 5 (lower is better)
Translates to: CSSSASGAKSSSCAR*AGSRRRGSMLMSTC
Trigger: GCAAGTGCTCATGAGCATGGAACCCCGGCGCCTGGAGCCTGCTCATCTGGCGCAGCTGCTGCTCTTCGCTCCTGACGCCGACGAGGAACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 90 bp AACTGGTCCGGCTCACTGAGGCGACCCGGAGCCTCGCGGAAAGCCTaGTATCGCTGTTCCTCGTCGGCGTCAGGAGCGAAGAGCAGCAGC +
Preference number: 5 (lower is better)
Translates to: NWSGSLRRPGASRKA*YRCSSSASGAKSSS
Trigger: GCTGCTGCTCTTCGCTCCTGACGCCGACGAGGAACAGCGATATCAGGCTTTCCGCGAGGCTCCGGGTCGCCTCAGTGAGCCGGACCAGTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 90 bp TGCCTTTATAAACTCGAACCGTCCTACGAGGACCCCCAGGGCCAGTaGGACCGCCCAGCAGCGAGGTTGCCTTCCGCGGGGGTGGCTCAT +
Preference number: 5 (lower is better)
Translates to: CLYKLEPSYEDPQGQ*DRPAARLPSAGVAH
Trigger: ATGAGCCACCCCCGCGGAAGGCAACCTCGCTGCTGGGCGGTCGCACTGGCCCTGGGGGTCCTCGTAGGACGGTTCGAGTTTATAAAGGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 90 bp TCGGGTGTCAGGAAGTCATCCACGATGCTGAGGCGGGGACCCAGCTaGTCGCTCAGCGCATCCAGGAAGCGATCTGTGTCTCGGCTCCGG +
Preference number: 5 (lower is better)
Translates to: SGVRKSSTMLRRGPS*SLSASRKRSVSRLR
Trigger: CCGGAGCCGAGACACAGATCGCTTCCTGGATGCGCTGAGCGAGCAGCTGGGTCCCCGCCTCAGCATCGTGGATGACTTCCTGACACCCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 90 bp CACTGGCGAAAGGGACCGGTCCTTCCTCTACCACCAGCGTGGGCATaGCGCCACTGCCCTGCAACATGGACACCACCTTGTCGTGGGAGC +
Preference number: 5 (lower is better)
Translates to: HWRKGPVLPLPPAWA*RHCPATWTPPCRGS
Trigger: GCTCCCACGACAAGGTGGTGTCCATGTTGCAGGGCAGTGGCGCCATGCCCACGCTGGTGGTAGAGGAAGGACCGGTCCCTTTCGCCAGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp ATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACAGGGAACTCCGTGGTaGTGGCTCTGGTGTGGGCTC +
Preference number: 5 (lower is better)
Translates to: IEAEGWVATGSQGDLLGRQGTPW*WLWCGL
Trigger: GAGCCCACACCAGAGCCACAACCACGGAGTTCCCTG...TCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS GCA 90 bp CTCCCCTGGACTCGGATACTGGAAGGCAGGATATCCGCCACCCACTaGAGCGAGGTGAGAGCTGACGCCCGGGTCGGGGAATCCAGAGAA +
Preference number: 5 (lower is better)
Translates to: LPWTRILEGRISATH*SEVRADARVGESRE
Trigger: TTCTCTGGATTCCCCGACCCGGGCGTCAGCTCTCACCTCGCTGCAGTGGGTGGCGGATATCCTGCCTTCCAGTATCCGAGTCCAGGGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 90 bp GCTGCGACGGCACATGGAAGAGGCCCTCAGGGAACTCCGTGGTTGTaGCTCTGGTGTGGGCTCTGGTGTAGACTCTGGCTCGAGGTCCAG +
Preference number: 5 (lower is better)
Translates to: AATAHGRGPQGTPWL*LWCGLWCRLWLEVQ
Trigger: CTGGACCTCGAGCCAGAGTCTACACCAGAGCCCACACCAGAGCCACAACCACGGAGTTCCCTGAGGGCCTCTTCCATGTGCCGTCGCAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 90 bp GCGCAAGCTGCGACGGCACATGGAAGAGGCCCTCAGGGAACTCCGTaGTTGTGGCTCTGGTGTGGGCTCTGGTGTAGACTCTGGCTCGAG +
Preference number: 5 (lower is better)
Translates to: AQAATAHGRGPQGTP*LWLWCGLWCRLWLE
Trigger: CTCGAGCCAGAGTCTACACCAGAGCCCACACCAGAGCCACAACCACGGAGTTCCCTGAGGGCCTCTTCCATGTGCCGTCGCAGCTTGCGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp CCGTTGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCGTGGTCTTGTTGGTCTaGGGCTGTCCATCGTTGAGA +
Preference number: 5 (lower is better)
Translates to: PLWASRRKGGWPPEARETVVLLV*GCPSLR
Trigger: TCTCAACGATGGACAGCCCAAGACCAACAAGACCAC...GGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAACGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp GGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCAGCTCGCTGGTTCACTTaGGCAGCCAGGGGCACAGTG +
Preference number: 5 (lower is better)
Translates to: GWPPEARETFLGDQGVWAARWFT*AARGTV
Trigger: CACTGTGCCCCTGGCTGCCAAAGTGAACCAGCGAGC...TGCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS TCA 90 bp CCTCACTGGAAGGGGCCATGCTCTGGCAGGCCACCTGAATCTCACTaGCGGTGTCATGGAGGTCAGCCAGGTCACCAGTCAGGGCTCGCT +
Preference number: 5 (lower is better)
Translates to: PHWKGPCSGRPPESH*RCHGGQPGHQSGLA
Trigger: AGCGAGCCCTGACTGGTGACCTGGCTGACCTCCATGACACCGTCAGTGAGATTCAGGTGGCCTGCCAGAGCATGGCCCCTTCCAGTGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 90 bp ACCGGTCCTTCCTCTACCACCAGCGTGGGCATGGCGCCACTGCCCTaGAACATGGACACCACCTTGTCGTGGGAGCAGTTCCTCATGTCC +
Preference number: 5 (lower is better)
Translates to: TGPSSTTSVGMAPLP*NMDTTLSWEQFLMS
Trigger: GGACATGAGGAACTGCTCCCACGACAAGGTGGTGTCCATGTTGCAGGGCAGTGGCGCCATGCCCACGCTGGTGGTAGAGGAAGGACCGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 90 bp AAGGGACCGGTCCTTCCTCTACCACCAGCGTGGGCATGGCGCCACTaGCCTGCAACATGGACACCACCTTGTCGTGGGAGCAGTTCCTCA +
Preference number: 5 (lower is better)
Translates to: KGPVLPLPPAWAWRH*PATWTPPCRGSSSS
Trigger: TGAGGAACTGCTCCCACGACAAGGTGGTGTCCATGTTGCAGGGCAGTGGCGCCATGCCCACGCTGGTGGTAGAGGAAGGACCGGTCCCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp GGTAGCCGGAGACACGTGGCTGCAGCCCCACCGCACCCAAGCCCTTCCTGCAGCAGTTTCCGGCTGTTTTaGAGCTCCAGAGATGCCTGT +
Preference number: 5 (lower is better)
Translates to: GSRRHVAAAPPHPSPSCSSFRLF*SSRDAC
Trigger: ACAGGCATCTCTGGAGCTCAAAAACAGCCGGAAACT...GCTGCAGGAAGGGCTTGGGTGCGGTGGGGCTGCAGCCACGTGTCTCCGGCTACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp GGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGAAGCCAGTGGTCTTGTaGGTCTTGGGCTGTCCATCG +
Preference number: 5 (lower is better)
Translates to: GGRVGGHRKPGRPSWETKKPVVL*VLGCPS
Trigger: CGATGGACAGCCCAAGACCAACAAGACCACTGGCTT...CTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp TGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTAAGCCAGTGGTCTTGTaGGTCTTGGGCTGTCCATCG +
Preference number: 5 (lower is better)
Translates to: CGHRGGRVGGHRKPGRPSKPVVL*VLGCPS
Trigger: CGATGGACAGCCCAAGACCAACAAGACCACTGGCTT...AGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS TCA 90 bp AGATGGTGCCTTCTGAGTTCTCCACCTGTTCCCAGCGTAAGCGCTTaGCGCTCATATGGCTGGTCTCACTGCGGCGGTGGCCCACGCCTC +
Preference number: 5 (lower is better)
Translates to: RWCLLSSPPVPSVSA*RSYGWSHCGGGPRL
Trigger: GAGGCGTGGGCCACCGCCGCAGTGAGACCAGCCATATGAGCGTCAAGCGCTTACGCTGGGAACAGGTGGAGAACTCAGAAGGCACCATCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 90 bp ATTCGGGAACCGACAGCATCTGCAGGACGAACTGGTCCGGCTCACTaGGGCGACCCGGAGCCTCGCGGAAAGCCTGATATCGCTGTTCCT +
Preference number: 5 (lower is better)
Translates to: IREPTASAGRTGPAH*GDPEPRGKPDIAVP
Trigger: AGGAACAGCGATATCAGGCTTTCCGCGAGGCTCCGGGTCGCCTCAGTGAGCCGGACCAGTTCGTCCTGCAGATGCTGTCGGTTCCCGAAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 90 bp CCTTGGCTGTCAGCCGATCCCCCAAGATGTCATCTACCTGGCAGCTaGACTCCTGGGCCTTGCGCCTGCGCTCTCTGTGCACAGCATCTG +
Preference number: 5 (lower is better)
Translates to: PWLSADPPRCHLPGS*TPGPCACALCAQHL
Trigger: CAGATGCTGTGCACAGAGAGCGCAGGCGCAAGGCCCAGGAGTTCAGCTGCCAGGTAGATGACATCTTGGGGGATCGGCTGACAGCCAAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS CCA 90 bp CTGAATCACTGGCGAAAGGGACCGGTCCTTCCTCTACCACCAGCGTaGGCATGGCGCCACTGCCCTGCAACATGGACACCACCTTGTCGT +
Preference number: 5 (lower is better)
Translates to: LNHWRKGPVLPLPPA*AWRHCPATWTPPCR
Trigger: ACGACAAGGTGGTGTCCATGTTGCAGGGCAGTGGCGCCATGCCCACGCTGGTGGTAGAGGAAGGACCGGTCCCTTTCGCCAGTGATTCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 90 bp GGCTCCGGGCCGGGCACTGGCTTCGGAGGTTTCTGGGTGCCGAAGTaGAGCTCCAGGTCGAGGTATTTCACCATGTCACTCAGCTTGTCA +
Preference number: 5 (lower is better)
Translates to: GSGPGTGFGGFWVPK*SSRSRYFTMSLSLS
Trigger: TGACAAGCTGAGTGACATGGTGAAATACCTCGACCTGGAGCTCCACTTCGGCACCCAGAAACCTCCGAAGCCAGTGCCCGGCCCGGAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 90 bp GTCAGCCGATCCCCCAAGATGTCATCTACCTGGCAGCTGAACTCCTaGGCCTTGCGCCTGCGCTCTCTGTGCACAGCATCTGGTCTGGGA +
Preference number: 5 (lower is better)
Translates to: VSRSPKMSSTWQLNS*ALRLRSLCTASGLG
Trigger: TCCCAGACCAGATGCTGTGCACAGAGAGCGCAGGCGCAAGGCCCAGGAGTTCAGCTGCCAGGTAGATGACATCTTGGGGGATCGGCTGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS CCA 90 bp ACCTGCTCCTTGGCTGTCAGCCGATCCCCCAAGATGTCATCTACCTaGCAGCTGAACTCCTGGGCCTTGCGCCTGCGCTCTCTGTGCACA +
Preference number: 5 (lower is better)
Translates to: TCSLAVSRSPKMSST*QLNSWALRLRSLCT
Trigger: TGTGCACAGAGAGCGCAGGCGCAAGGCCCAGGAGTTCAGCTGCCAGGTAGATGACATCTTGGGGGATCGGCTGACAGCCAAGGAGCAGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS-3UTR CAA 90 bp GGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCCGCGCTGCTCCTCTCGTaGGTCACAAAGCTGCCCTGG +
Preference number: 5 (lower is better)
Translates to: GAWSSTLDPVTFLHGAASALLLS*VTKLPW
Trigger: CCAGGGCAGCTTTGTGACCAACGAGAGGAGCAGCGC...GGAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp AGCCTCCAGCATCGGTCTCCGTGCTCAGACTGCAGAAGATGCTTGGTGGCAGCTCTGCGCAGGCGGGTCTaGTATTCGGGAACCGACAGC +
Preference number: 5 (lower is better)
Translates to: SLQHRSPCSDCRRCLVAALRRRV*YSGTDS
Trigger: GCTGTCGGTTCCCGAATACAAGACCCGCCTGCGCAG...AGCTGCCACCAAGCATCTTCTGCAGTCTGAGCACGGAGACCGATGCTGGAGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp GCCAAGCAGAACTCGGCAGCTGAGGTAGCCGGAGACACGTGGCTGCAGCCCCACTTGAAGCCAGTGGTCTaGTTGGTCTTGGGCTGTCCA +
Preference number: 5 (lower is better)
Translates to: AKQNSAAEVAGDTWLQPHLKPVV*LVLGCP
Trigger: TGGACAGCCCAAGACCAACAAGACCACTGGCTTCAA...GTGGGGCTGCAGCCACGTGTCTCCGGCTACCTCAGCTGCCGAGTTCTGCTTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp TGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTAGCTCGGTCAGGAAGTaGATCTTGAAGCCAGTGGTC +
Preference number: 5 (lower is better)
Translates to: CGHRGGRVGGHRKPGRPSSSVRK*ILKPVV
Trigger: GACCACTGGCTTCAAGATCAACTTCCTGACCGAGCT...AGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS TCA 90 bp CTCGGATACTGGAAGGCAGGATATCCGCCACCCACTGCAGCGAGGTaGGAGCTGACGCCCGGGTCGGGGAATCCAGAGAATCTGAATCAC +
Preference number: 5 (lower is better)
Translates to: LGYWKAGYPPPTAAR*ELTPGSGNPENLNH
Trigger: GTGATTCAGATTCTCTGGATTCCCCGACCCGGGCGTCAGCTCTCACCTCGCTGCAGTGGGTGGCGGATATCCTGCCTTCCAGTATCCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 90 bp TGTAGGCCTTCTTGTGGGACAAGATCTCCACCACTTCCTTCTTCCTaGAGGGCTCCGGGCCGGGCACTGGCTTCGGAGGTTTCTGGGTGC +
Preference number: 5 (lower is better)
Translates to: CRPSCGTRSPPLPSS*RAPGRALASEVSGC
Trigger: GCACCCAGAAACCTCCGAAGCCAGTGCCCGGCCCGGAGCCCTTCAGGAAGAAGGAAGTGGTGGAGATCTTGTCCCACAAGAAGGCCTACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 90 bp GCAAACCTGTCCTCACTGGAAGGGGCCATGCTCTGGCAGGCCACCTaGATCTCACTGACGGTGTCATGGAGGTCAGCCAGGTCACCAGTC +
Preference number: 5 (lower is better)
Translates to: ANLSSLEGAMLWQAT*ISLTVSWRSARSPV
Trigger: GACTGGTGACCTGGCTGACCTCCATGACACCGTCAGTGAGATTCAGGTGGCCTGCCAGAGCATGGCCCCTTCCAGTGAGGACAGGTTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 90 bp TCCATGGCCTCTCGCTGCAGACCATCCAACGCTCGCAGGGCTGGCTaGGCTGTTTCCAGAAAGGAAGCCATGACCACAGCAAACCTGTCC +
Preference number: 5 (lower is better)
Translates to: SMASRCRPSNARRAG*AVSRKEAMTTANLS
Trigger: GGACAGGTTTGCTGTGGTCATGGCTTCCTTTCTGGAAACAGCGCAGCCAGCCCTGCGAGCGTTGGATGGTCTGCAGCGAGAGGCCATGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 90 bp CTGGGCAGCACGAGAGTGAGGGTCCACACCAGCTCATCCACCCGTTaGTCGGCAGCGAACTGCTTCAGTGCAGTAAACACCTGCTCCTTG +
Preference number: 5 (lower is better)
Translates to: LGSTRVRVHTSSSTR*SAANCFSAVNTCSL
Trigger: CAAGGAGCAGGTGTTTACTGCACTGAAGCAGTTCGCTGCCGAGCAACGGGTGGATGAGCTGGTGTGGACCCTCACTCTCGTGCTGCCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS GCA 90 bp TTGCCCAGCAGACCCTGCGACACCACCTCGTCGAAGCGCGCCCGATaGTTTTTGGGAATAAAGATCCTGAGGTTGTCCAGGACTGGCCCC +
Preference number: 5 (lower is better)
Translates to: LPSRPCDTTSSKRAR*FLGIKILRLSRTGP
Trigger: GGGGCCAGTCCTGGACAACCTCAGGATCTTTATTCCCAAAAAGCATCGGGCGCGCTTCGACGAGGTGGTGTCGCAGGGTCTGCTGGGCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS-3UTR CAA 90 bp CTGCAGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGCAGGGAACTCCGTGGTaGTGGCTCTGGTGTGGGCTC +
Preference number: 5 (lower is better)
Translates to: LQPRCMVKYPGPCDIPPWQGTPW*WLWCGL
Trigger: GAGCCCACACCAGAGCCACAACCACGGAGTTCCCTG...CCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCTGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp CCCTTCCTGCAGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCTGCGCAGGCGGGTCTaGTATTCGGGAACCGACAGC +
Preference number: 5 (lower is better)
Translates to: PFLQPRCMVKYPGPCDIPLRRRV*YSGTDS
Trigger: GCTGTCGGTTCCCGAATACAAGACCCGCCTGCGCAG...AGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCTGCAGGAAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp TGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTAGTTTCCGGCTGTTTTaGAGCTCCAGAGATGCCTGT +
Preference number: 5 (lower is better)
Translates to: CGHRGGRVGGHRKPGRPSSFRLF*SSRDAC
Trigger: ACAGGCATCTCTGGAGCTCAAAAACAGCCGGAAACT...AGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp GCCAAGCAGAACTCGGCAGCTGAGGTAGCCGGAGACACGTGGCTGCAGCCCCACACAAACTCCAGGATCTaGGCGAGTTTCCGGCTGTTT +
Preference number: 5 (lower is better)
Translates to: AKQNSAAEVAGDTWLQPHTNSRI*ASFRLF
Trigger: AAACAGCCGGAAACTCGCCAAGATCCTGGAGTTTGT...GTGGGGCTGCAGCCACGTGTCTCCGGCTACCTCAGCTGCCGAGTTCTGCTTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp AGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGCCTCGCTCGCTGGTTCACTTaGGCAGCCAGGGGCACAGTG +
Preference number: 5 (lower is better)
Translates to: RCMVKYPGPCDIPPWCSLARWFT*AARGTV
Trigger: CACTGTGCCCCTGGCTGCCAAAGTGAACCAGCGAGC...GAGGCTGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS GCA 90 bp GCCAGGGGTGACACCATCCCTGAGCTGCGTGGGCCATCCCCTGCCTaGAGGTCGCTGAGGGCTCTCTCAAATTTGCTCATGAATTCTGAA +
Preference number: 5 (lower is better)
Translates to: ARGDTIPELRGPSPA*RSLRALSNLLMNSE
Trigger: TTCAGAATTCATGAGCAAATTTGAGAGAGCCCTCAGCGACCTGCAGGCAGGGGATGGCCCACGCAGCTCAGGGATGGTGTCACCCCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 90 bp CCACACCAGCTCATCCACCCGTTGCTCGGCAGCGAACTGCTTCAGTaGAGTAAACACCTGCTCCTTGGCTGTCAGCCGATCCCCCAAGAT +
Preference number: 5 (lower is better)
Translates to: PHQLIHPLLGSELLQ*SKHLLLGCQPIPQD
Trigger: ATCTTGGGGGATCGGCTGACAGCCAAGGAGCAGGTGTTTACTGCACTGAAGCAGTTCGCTGCCGAGCAACGGGTGGATGAGCTGGTGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS CCA 90 bp CTTCCTCTACCACCAGCGTGGGCATGGCGCCACTGCCCTGCAACATaGACACCACCTTGTCGTGGGAGCAGTTCCTCATGTCCAATCCAT +
Preference number: 5 (lower is better)
Translates to: LPLPPAWAWRHCPAT*TPPCRGSSSSCPIH
Trigger: ATGGATTGGACATGAGGAACTGCTCCCACGACAAGGTGGTGTCCATGTTGCAGGGCAGTGGCGCCATGCCCACGCTGGTGGTAGAGGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp CAGCATTTTATTCACCGTTGTGGGCATCGAGGCGGAAGGGTGGGTGGCCACCGGATCCGGTCACCTGACTaGAGGGAGGCATTTTCAGCC +
Preference number: 5 (lower is better)
Translates to: QHFIHRCGHRGGRVGGHRIRSPD*REAFSA
Trigger: GGCTGAAAATGCCTCCCTCAAGTCAGGTGACCGGAT...CCGGTGGCCACCCACCCTTCCGCCTCGATGCCCACAACGGTGAATAAAATGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp ATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACTCATGTCCAATCCATaGAGGAAGAGGATCCGGTCA +
Preference number: 5 (lower is better)
Translates to: IEAEGWVATGSQGDLLGRLMSNP*RKRIRS
Trigger: TGACCGGATCCTCTTCCTCAATGGATTGGACATGAG...TCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp TCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCTGCGCTGCTCCTCTCGTaGGTCACAAAGCTGCCCTGG +
Preference number: 5 (lower is better)
Translates to: SWETKVYGQKRAKQNSAAALLLS*VTKLPW
Trigger: CCAGGGCAGCTTTGTGACCAACGAGAGGAGCAGCGC...AGCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp TTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCGTGCGGGAGCTAGGCTaGGGGTCATGGAAAGGCAGG +
Preference number: 5 (lower is better)
Translates to: FLGDQGVWAKEGQAELGSVRELG*GSWKGR
Trigger: CCTGCCTTTCCATGACCCCAAGCCTAGCTCCCGCAC...GCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp GGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTCAGGAAGTTGATCTaGAAGCCAGTGGTCTTGTTG +
Preference number: 5 (lower is better)
Translates to: GGRVGGHRKPGRPSWETKVRKLI*KPVVLL
Trigger: CAACAAGACCACTGGCTTCAAGATCAACTTCCTGAC...CTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp ATCGAGGCGGAAGGGTGGGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGATGCTGGCTTAGCGATTaGGCAAGGATGTGCAGAAAG +
Preference number: 5 (lower is better)
Translates to: IEAEGWVATGSQGDLLGRCWLSD*ARMCRK
Trigger: CTTTCTGCACATCCTTGCCAAATCGCTAAGCCAGCA...TCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACCCACCCTTCCGCCTCGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS TCA 90 bp GTACCTGCTTGGCGGGTGTGTCCAGGACGGGGTAGACATCCACGATaGGGGTATCGATGTTCCTGTGCTGAAAGAAGCGCTCGAGAGCTC +
Preference number: 5 (lower is better)
Translates to: VPAWRVCPGRGRHPR*GYRCSCAERSAREL
Trigger: GAGCTCTCGAGCGCTTCTTTCAGCACAGGAACATCGATACCCTCATCGTGGATGTCTACCCCGTCCTGGACACACCCGCCAAGCAGGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 90 bp TCTCTTCATAGTCATTCTCGGGTGTCAGGAAGTCATCCACGATGCTaGGGCGGGGACCCAGCTGCTCGCTCAGCGCATCCAGGAAGCGAT +
Preference number: 5 (lower is better)
Translates to: SLHSHSRVSGSHPRC*GGDPAARSAHPGSD
Trigger: ATCGCTTCCTGGATGCGCTGAGCGAGCAGCTGGGTCCCCGCCTCAGCATCGTGGATGACTTCCTGACACCCGAGAATGACTATGAAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 90 bp TTGCCCAGCAGACCCTGCGACACCACCTCGTCGAAGCGCGCCCGATaGTTTTTGGGAATAAAGATCCTAAAGTGCCGAGAGAAGCCCTGG +
Preference number: 5 (lower is better)
Translates to: LPSRPCDTTSSKRAR*FLGIKILKCREKPW
Trigger: CCAGGGCTTCTCTCGGCACTTTAGGATCTTTATTCCCAAAAAGCATCGGGCGCGCTTCGACGAGGTGGTGTCGCAGGGTCTGCTGGGCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp TGCTCCCACCGAGCCACAGACAACCGCAGCAAGCCAGCATCCACTCTGCAGTCTTTGAAGCCAGTGGTCTaGTTGGTCTTGGGCTGTCCA +
Preference number: 5 (lower is better)
Translates to: CSHRATDNRSKPASTLQSLKPVV*LVLGCP
Trigger: TGGACAGCCCAAGACCAACAAGACCACTGGCTTCAA...AGACTGCAGAGTGGATGCTGGCTTGCTGCGGTTGTCTGTGGCTCGGTGGGAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp GGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCAAAGCTCGGTCAGGAAGTaGATCTTGAAGCCAGTGGTC +
Preference number: 5 (lower is better)
Translates to: GGHRKPGRPSWETKVYGQSSVRK*ILKPVV
Trigger: GACCACTGGCTTCAAGATCAACTTCCTGACCGAGCT...TTGCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp AAGAGGGCCAAGCAGAACTCGGCAGCTGAGGTAGCCGGAGACACGTGGCTGCAGTGCTGGCTTAGCGATTaGGCAAGGATGTGCAGAAAG +
Preference number: 5 (lower is better)
Translates to: KRAKQNSAAEVAGDTWLQCWLSD*ARMCRK
Trigger: CTTTCTGCACATCCTTGCCAAATCGCTAAGCCAGCA...CTGCAGCCACGTGTCTCCGGCTACCTCAGCTGCCGAGTTCTGCTTGGCCCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS TCA 90 bp GCAGTTCCTCATGTCCAATCCATTGAGGAAGAGGATCCGGTCACCTaGCTTGAGGGAGGCATTTTCAGCCGGGCTGCCAGGCAGGACAGA +
Preference number: 5 (lower is better)
Translates to: AVPHVQSIEEEDPVT*LEGGIFSRAARQDR
Trigger: TCTGTCCTGCCTGGCAGCCCGGCTGAAAATGCCTCCCTCAAGTCAGGTGACCGGATCCTCTTCCTCAATGGATTGGACATGAGGAACTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 90 bp TGTCGCAGACACTCGAGGCTGCCTCGTATCTCCTCTGTCTTCTCCTaGAAGGTAGCCTGGAAGTGTAGACTGCGCAGGCGGGTCTTGTAT +
Preference number: 5 (lower is better)
Translates to: CRRHSRLPRISSVFS*KVAWKCRLRRRVLY
Trigger: ATACAAGACCCGCCTGCGCAGTCTACACTTCCAGGCTACCTTGCAGGAGAAGACAGAGGAGATACGAGGCAGCCTCGAGTGTCTGCGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp GGTGGCCACCGGAAGCCAGGGAGACCTTCTTGGGAGACCAAGGTGTATGGGCAAGTCCCTATCTTCCCTTaGAAGCTGCTGTTCAGTCGA +
Preference number: 5 (lower is better)
Translates to: GGHRKPGRPSWETKVYGQVPIFP*KLLFSR
Trigger: TCGACTGAACAGCAGCTTCAAAGGGAAGATAGGGAC...TTGCCCATACACCTTGGTCTCCCAAGAAGGTCTCCCTGGCTTCCGGTGGCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp TGCTCCCACCGAGCCACAGACAACCGCAGCAAGCCAGCATCCACTCTGCAGTCTGTCCCTATCTTCCCTTaGAAGCTGCTGTTCAGTCGA +
Preference number: 5 (lower is better)
Translates to: CSHRATDNRSKPASTLQSVPIFP*KLLFSR
Trigger: TCGACTGAACAGCAGCTTCAAAGGGAAGATAGGGAC...AGACTGCAGAGTGGATGCTGGCTTGCTGCGGTTGTCTGTGGCTCGGTGGGAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS TCA 90 bp TGGCCAACACAAACTCCAGGATCTTGGCGAGTTTCCGGCTGTTTTTaGGCTCCAGAGATGCCTGTCGCAGACACTCGAGGCTGCCTCGTA +
Preference number: 5 (lower is better)
Translates to: WPTQTPGSWRVSGCF*APEMPVADTRGCLV
Trigger: TACGAGGCAGCCTCGAGTGTCTGCGACAGGCATCTCTGGAGCTCAAAAACAGCCGGAAACTCGCCAAGATCCTGGAGTTTGTGTTGGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp AGCCTCCAGCATCGGTCTCCGTGCTCAGACTGCAGAAGATGCTTGGTGGCAGCTACAAACTCCAGGATCTaGGCGAGTTTCCGGCTGTTT +
Preference number: 5 (lower is better)
Translates to: SLQHRSPCSDCRRCLVAATNSRI*ASFRLF
Trigger: AAACAGCCGGAAACTCGCCAAGATCCTGGAGTTTGT...AGCTGCCACCAAGCATCTTCTGCAGTCTGAGCACGGAGACCGATGCTGGAGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp CTGCAGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGGTGGTCTTGTTGGTCTaGGGCTGTCCATCGTTGAGA +
Preference number: 5 (lower is better)
Translates to: LQPRCMVKYPGPCDIPPWVVLLV*GCPSLR
Trigger: TCTCAACGATGGACAGCCCAAGACCAACAAGACCAC...CCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCTGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS CCA 90 bp CAGGGAAGTGCTGGCTTAGCGATTTGGCAAGGATGTGCAGAAAGGTaGACTTCCCGTCCACTGTCTTGGTGGAGTTTAGCTCGGTCAGGA +
Preference number: 5 (lower is better)
Translates to: QGSAGLAIWQGCAER*TSRPLSWWSLARSG
Trigger: TCCTGACCGAGCTAAACTCCACCAAGACAGTGGACGGGAAGTCCACCTTTCTGCACATCCTTGCCAAATCGCTAAGCCAGCACTTCCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp CATCTCTTCCTCCTCCAGTTCCTCTCGGTATGGAAGTCTGTCCTCTCTCCTGTCATCCGGTCACCTGACTaGAGGGAGGCATTTTCAGCC +
Preference number: 5 (lower is better)
Translates to: HLFLLQFLSVWKSVLSPVIRSPD*REAFSA
Trigger: GGCTGAAAATGCCTCCCTCAAGTCAGGTGACCGGAT...GACAGGAGAGAGGACAGACTTCCATACCGAGAGGAACTGGAGGAGGAAGAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS TCA 90 bp CAGGCAGGACAGATTCGATCCAGACCGGTCCATGGCCTCGCAGAGTaGAGCCGAAACTCTTGTTGCCTTTATAAACTCGAACCGTCCTAC +
Preference number: 5 (lower is better)
Translates to: QAGQIRSRPVHGLAE*SRNSCCLYKLEPSY
Trigger: GTAGGACGGTTCGAGTTTATAAAGGCAACAAGAGTTTCGGCTTCACTCTGCGAGGCCATGGACCGGTCTGGATCGAATCTGTCCTGCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp AGCCAAGGTGCATGGTCAAGTACCCTGGACCCTGTGACATTCCTCCATGGTGCAGTCAGGAAGTTGATCTaGAAGCCAGTGGTCTTGTTG +
Preference number: 5 (lower is better)
Translates to: SQGAWSSTLDPVTFLHGAVRKLI*KPVVLL
Trigger: CAACAAGACCACTGGCTTCAAGATCAACTTCCTGAC...TGCACCATGGAGGAATGTCACAGGGTCCAGGGTACTTGACCATGCACCTTGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp TGCTCCCACCGAGCCACAGACAACCGCAGCAAGCCAGCATCCACTCTGCAGTCTAGGGCTCTCTCAAATTaGCTCATGAATTCTGAAAAG +
Preference number: 5 (lower is better)
Translates to: CSHRATDNRSKPASTLQSRALSN*LMNSEK
Trigger: CTTTTCAGAATTCATGAGCAAATTTGAGAGAGCCCT...AGACTGCAGAGTGGATGCTGGCTTGCTGCGGTTGTCTGTGGCTCGGTGGGAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp GACCTTCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCGCGCCCGATGCTTTTaGGGAATAAAGATCCTAAAG +
Preference number: 5 (lower is better)
Translates to: DLLGRPRCMGKRGPSRTRRARCF*GIKILK
Trigger: CTTTAGGATCTTTATTCCCAAAAAGCATCGGGCGCG...CCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGAAGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS-3UTR CAA 90 bp TCTTGGGAGACCAAGGTGTATGGGCAAAAGAGGGCCAAGCAGAACTCGGCAGCTAGGGCTCTCTCAAATTaGCTCATGAATTCTGAAAAG +
Preference number: 5 (lower is better)
Translates to: SWETKVYGQKRAKQNSAARALSN*LMNSEK
Trigger: CTTTTCAGAATTCATGAGCAAATTTGAGAGAGCCCT...AGCTGCCGAGTTCTGCTTGGCCCTCTTTTGCCCATACACCTTGGTCTCCCAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000010969.15
ENSMUST00000120825.2
CDS GCA 72 bp CGGGCGCTCCTCGCTGCGGCTCCGACGCAAACGCTGTaGGCCCTGCGCCCTCCGAGCACGGCACAGCTTGCC +
Preference number: 6 (lower is better)
Translates to: RALLAAAPTQTL*ALRPPSTAQLA
Trigger: GGCAAGCTGTGCCGTGCTCGGAGGGCGCAGGGCGCACAGCGTTTGCGTCGGAGCCGCAGCGAGGAGCGCCCG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 72 bp GCCACCCTCGGGGCCTGGGAGCACACCGAGGCTGGGTaGCACTCGAGGGCAGCGCCGTGCCAAGCGCACGAT +
Preference number: 6 (lower is better)
Translates to: ATLGAWEHTEAG*HSRAAPCQAHD
Trigger: ATCGTGCGCTTGGCACGGCGCTGCCCTCGAGTGCCACCCAGCCTCGGTGTGCTCCCAGGCCCCGAGGGTGGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS GCA 72 bp GTGGCACTCGAGGGCAGCGCCGTGCCAAGCGCACGATaGGCTCTCGGCTCAGGCCACCCACAGCCAGCCCCT +
Preference number: 6 (lower is better)
Translates to: VALEGSAVPSAR*ALGSGHPQPAP
Trigger: AGGGGCTGGCTGTGGGTGGCCTGAGCCGAGAGCGCATCGTGCGCTTGGCACGGCGCTGCCCTCGAGTGCCAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS GCA 72 bp CACACCGAGGCTGGGTGGCACTCGAGGGCAGCGCCGTaGCAAGCGCACGATGCGCTCTCGGCTCAGGCCACC +
Preference number: 6 (lower is better)
Translates to: HTEAGWHSRAAP*QAHDALSAQAT
Trigger: GGTGGCCTGAGCCGAGAGCGCATCGTGCGCTTGGCACGGCGCTGCCCTCGAGTGCCACCCAGCCTCGGTGTG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS CCA 72 bp GGCTGCTGTCAAGGCTGTGGGGCCACCCTCGGGGCCTaGGAGCACACCGAGGCTGGGTGGCACTCGAGGGCA +
Preference number: 6 (lower is better)
Translates to: GCCQGCGATLGA*EHTEAGWHSRA
Trigger: TGCCCTCGAGTGCCACCCAGCCTCGGTGTGCTCCCAGGCCCCGAGGGTGGCCCCACAGCCTTGACAGCAGCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS CAA 90 bp CGACGCAAACGCTGTGCGCCCTGCGCCCTCCGAGCACGGCACAGCTaGCCCAGCAGACCCTGCGACACCACCTCGTCGAAGCGCGCCCGA +
Preference number: 6 (lower is better)
Translates to: RRKRCAPCALRARHS*PSRPCDTTSSKRAR
Trigger: TCGGGCGCGCTTCGACGAGGTGGTGTCGCAGGGTCTGCTGGGCAAGCTGTGCCGTGCTCGGAGGGCGCAGGGCGCACAGCGTTTGCGTCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 72 bp GCTGTGCGCCCTGCGCCCTCCGAGCACGGCACAGCTTaGCCAGCAGACCCTGCGACACCACCTCGTCGAAGC +
Preference number: 6 (lower is better)
Translates to: AVRPAPSEHGTA*PADPATPPRRS
Trigger: GCTTCGACGAGGTGGTGTCGCAGGGTCTGCTGGGCAAGCTGTGCCGTGCTCGGAGGGCGCAGGGCGCACAGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 72 bp TCCTCGCTGCGGCTCCGACGCAAACGCTGTGCGCCCTaGGCCCTCCGAGCACGGCACAGCTTGCCCAGCAGA +
Preference number: 6 (lower is better)
Translates to: SSLRLRRKRCAP*ALRARHSLPSR
Trigger: TCTGCTGGGCAAGCTGTGCCGTGCTCGGAGGGCGCAGGGCGCACAGCGTTTGCGTCGGAGCCGCAGCGAGGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 72 bp GCCAGGAGACTCCAGACAGGGTCCTGGGCCCTGATGTaGCGACCAGGCTGGGGACTGGTGGAGAGGCCCGGG +
Preference number: 6 (lower is better)
Translates to: ARRLQTGSWALM*RPGWGLVERPG
Trigger: CCCGGGCCTCTCCACCAGTCCCCAGCCTGGTCGGCACATCAGGGCCCAGGACCCTGTCTGGAGTCTCCTGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 72 bp CGCTGTGCGCCCTGCGCCCTCCGAGCACGGCACAGCTaGCCCAGCAGACCCTGCGACACCACCTCGTCGAAG +
Preference number: 6 (lower is better)
Translates to: RCAPCALRARHS*PSRPCDTTSSK
Trigger: CTTCGACGAGGTGGTGTCGCAGGGTCTGCTGGGCAAGCTGTGCCGTGCTCGGAGGGCGCAGGGCGCACAGCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 72 bp AAACTCGAACCGTCCTACGAGGACCCCCAGGGCCAGTaGGACCGCCCAGCAGCGAGGTTGCCTTCCGCGGGG +
Preference number: 6 (lower is better)
Translates to: KLEPSYEDPQGQ*DRPAARLPSAG
Trigger: CCCCGCGGAAGGCAACCTCGCTGCTGGGCGGTCGCACTGGCCCTGGGGGTCCTCGTAGGACGGTTCGAGTTT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 72 bp CTGGCTGTGGGGAGGGCGCCCTGCTGCTGTCCAAGCTaGCGTAGGGGTGGGATTCCGAGCTGCTGGGAGAGG +
Preference number: 6 (lower is better)
Translates to: LAVGRAPCCCPS*RRGGIPSCWER
Trigger: CCTCTCCCAGCAGCTCGGAATCCCACCCCTACGCCAGCTTGGACAGCAGCAGGGCGCCCTCCCCACAGCCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 72 bp CAGGAAGCGATCTGTGTCTCGGCTCCGGACTGGGCGTaGGAAGGCGAAGAGCTTCCGGCGACTGGGCGGCCG +
Preference number: 6 (lower is better)
Translates to: QEAICVSAPDWA*EGEELPATGRP
Trigger: CGGCCGCCCAGTCGCCGGAAGCTCTTCGCCTTCTCACGCCCAGTCCGGAGCCGAGACACAGATCGCTTCCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 72 bp GGCTCCAGGCGCCGGGGTTCCATGCTCATGAGCACTTaGCGCAGCTCGCCAGGGGTCAGCTTCAGGTGCGCT +
Preference number: 6 (lower is better)
Translates to: GSRRRGSMLMST*RSSPGVSFRCA
Trigger: AGCGCACCTGAAGCTGACCCCTGGCGAGCTGCGGCAAGTGCTCATGAGCATGGAACCCCGGCGCCTGGAGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 72 bp AGGCTCCAGGCGCCGGGGTTCCATGCTCATGAGCACTaGCCGCAGCTCGCCAGGGGTCAGCTTCAGGTGCGC +
Preference number: 6 (lower is better)
Translates to: RLQAPGFHAHEH*PQLARGQLQVR
Trigger: GCGCACCTGAAGCTGACCCCTGGCGAGCTGCGGCAAGTGCTCATGAGCATGGAACCCCGGCGCCTGGAGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 72 bp TCGGCGTCAGGAGCGAAGAGCAGCAGCTGCGCCAGATaGGCAGGCTCCAGGCGCCGGGGTTCCATGCTCATG +
Preference number: 6 (lower is better)
Translates to: SASGAKSSSCAR*AGSRRRGSMLM
Trigger: CATGAGCATGGAACCCCGGCGCCTGGAGCCTGCTCATCTGGCGCAGCTGCTGCTCTTCGCTCCTGACGCCGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 72 bp CAGACAGGGTCCTGGGCCCTGATGTGCCGACCAGGCTaGGGACTGGTGGAGAGGCCCGGGATTTGGACATGG +
Preference number: 6 (lower is better)
Translates to: QTGSWALMCRPG*GLVERPGIWTW
Trigger: CCATGTCCAAATCCCGGGCCTCTCCACCAGTCCCCAGCCTGGTCGGCACATCAGGGCCCAGGACCCTGTCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 72 bp GATGAGCAGGCTCCAGGCGCCGGGGTTCCATGCTCATaGGCACTTGCCGCAGCTCGCCAGGGGTCAGCTTCA +
Preference number: 6 (lower is better)
Translates to: DEQAPGAGVPCS*ALAAARQGSAS
Trigger: TGAAGCTGACCCCTGGCGAGCTGCGGCAAGTGCTCATGAGCATGGAACCCCGGCGCCTGGAGCCTGCTCATC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 72 bp GGCTCACTGAGGCGACCCGGAGCCTCGCGGAAAGCCTaGTATCGCTGTTCCTCGTCGGCGTCAGGAGCGAAG +
Preference number: 6 (lower is better)
Translates to: GSLRRPGASRKA*YRCSSSASGAK
Trigger: CTTCGCTCCTGACGCCGACGAGGAACAGCGATATCAGGCTTTCCGCGAGGCTCCGGGTCGCCTCAGTGAGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 72 bp TCTCCAGGCCCTGGGAGCGCAAGCTGCGACGGCACATaGAAGAGGCCCTCAGGGAACTCCGTGGTTGTGGCT +
Preference number: 6 (lower is better)
Translates to: SPGPGSASCDGT*KRPSGNSVVVA
Trigger: AGCCACAACCACGGAGTTCCCTGAGGGCCTCTTCCATGTGCCGTCGCAGCTTGCGCTCCCAGGGCCTGGAGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 72 bp CTGGGCCTTGCGCCTGCGCTCTCTGTGCACAGCATCTaGTCTGGGACCACCAGCCAAACGCAGCAGTTCGCG +
Preference number: 6 (lower is better)
Translates to: LGLAPALSVHSI*SGTTSQTQQFA
Trigger: CGCGAACTGCTGCGTTTGGCTGGTGGTCCCAGACCAGATGCTGTGCACAGAGAGCGCAGGCGCAAGGCCCAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS TCA 72 bp CCGACAGCATCTGCAGGACGAACTGGTCCGGCTCACTaGGGCGACCCGGAGCCTCGCGGAAAGCCTGATATC +
Preference number: 6 (lower is better)
Translates to: PTASAGRTGPAH*GDPEPRGKPDI
Trigger: GATATCAGGCTTTCCGCGAGGCTCCGGGTCGCCTCAGTGAGCCGGACCAGTTCGTCCTGCAGATGCTGTCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 72 bp GTCCTTCCTCTACCACCAGCGTGGGCATGGCGCCACTaGCCTGCAACATGGACACCACCTTGTCGTGGGAGC +
Preference number: 6 (lower is better)
Translates to: VLPLPPAWAWRH*PATWTPPCRGS
Trigger: GCTCCCACGACAAGGTGGTGTCCATGTTGCAGGGCAGTGGCGCCATGCCCACGCTGGTGGTAGAGGAAGGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 72 bp ACTCGGATACTGGAAGGCAGGATATCCGCCACCCACTaGAGCGAGGTGAGAGCTGACGCCCGGGTCGGGGAA +
Preference number: 6 (lower is better)
Translates to: TRILEGRISATH*SEVRADARVGE
Trigger: TTCCCCGACCCGGGCGTCAGCTCTCACCTCGCTGCAGTGGGTGGCGGATATCCTGCCTTCCAGTATCCGAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 72 bp GCTCCGGGCCGGGCACTGGCTTCGGAGGTTTCTGGGTaGCGAAGTGGAGCTCCAGGTCGAGGTATTTCACCA +
Preference number: 6 (lower is better)
Translates to: APGRALASEVSG*RSGAPGRGISP
Trigger: TGGTGAAATACCTCGACCTGGAGCTCCACTTCGGCACCCAGAAACCTCCGAAGCCAGTGCCCGGCCCGGAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 72 bp TGGCGAAAGGGACCGGTCCTTCCTCTACCACCAGCGTaGGCATGGCGCCACTGCCCTGCAACATGGACACCA +
Preference number: 6 (lower is better)
Translates to: WRKGPVLPLPPA*AWRHCPATWTP
Trigger: TGGTGTCCATGTTGCAGGGCAGTGGCGCCATGCCCACGCTGGTGGTAGAGGAAGGACCGGTCCCTTTCGCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 72 bp AAGGGCTCCGGGCCGGGCACTGGCTTCGGAGGTTTCTaGGTGCCGAAGTGGAGCTCCAGGTCGAGGTATTTC +
Preference number: 6 (lower is better)
Translates to: KGSGPGTGFGGF*VPKWSSRSRYF
Trigger: GAAATACCTCGACCTGGAGCTCCACTTCGGCACCCAGAAACCTCCGAAGCCAGTGCCCGGCCCGGAGCCCTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 72 bp CCTTGCGCCTGCGCTCTCTGTGCACAGCATCTGGTCTaGGACCACCAGCCAAACGCAGCAGTTCGCGGCTCA +
Preference number: 6 (lower is better)
Translates to: PCACALCAQHLV*DHQPNAAVRGS
Trigger: TGAGCCGCGAACTGCTGCGTTTGGCTGGTGGTCCCAGACCAGATGCTGTGCACAGAGAGCGCAGGCGCAAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS CAA 90 bp CAAGCTGCGACGGCACATGGAAGAGGCCCTCAGGGAACTCCGTGGTaGTGGCTCTGGTGTGGGCTCTGGTGTAGACTCTGGCTCGAGGTC +
Preference number: 6 (lower is better)
Translates to: QAATAHGRGPQGTPW*WLWCGLWCRLWLEV
Trigger: GACCTCGAGCCAGAGTCTACACCAGAGCCCACACCAGAGCCACAACCACGGAGTTCCCTGAGGGCCTCTTCCATGTGCCGTCGCAGCTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 72 bp TGGAAGGCAGGATATCCGCCACCCACTGCAGCGAGGTaGGAGCTGACGCCCGGGTCGGGGAATCCAGAGAAT +
Preference number: 6 (lower is better)
Translates to: WKAGYPPPTAAR*ELTPGSGNPEN
Trigger: ATTCTCTGGATTCCCCGACCCGGGCGTCAGCTCTCACCTCGCTGCAGTGGGTGGCGGATATCCTGCCTTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 72 bp TTAGGGGTTTCCGGGAGGGATGTGCCATCGCCAGCCTaGCGCTCGCCTGGGATCAGAGGTAGGGGCATCTCA +
Preference number: 6 (lower is better)
Translates to: LGVSGRDVPSPA*RSPGIRGRGIS
Trigger: TGAGATGCCCCTACCTCTGATCCCAGGCGAGCGTCAGGCTGGCGATGGCACATCCCTCCCGGAAACCCCTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 72 bp TCCTCTACCACCAGCGTGGGCATGGCGCCACTGCCCTaGAACATGGACACCACCTTGTCGTGGGAGCAGTTC +
Preference number: 6 (lower is better)
Translates to: SSTTSVGMAPLP*NMDTTLSWEQF
Trigger: GAACTGCTCCCACGACAAGGTGGTGTCCATGTTGCAGGGCAGTGGCGCCATGCCCACGCTGGTGGTAGAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 72 bp CCACCAGCGTGGGCATGGCGCCACTGCCCTGCAACATaGACACCACCTTGTCGTGGGAGCAGTTCCTCATGT +
Preference number: 6 (lower is better)
Translates to: PPAWAWRHCPAT*TPPCRGSSSSC
Trigger: ACATGAGGAACTGCTCCCACGACAAGGTGGTGTCCATGTTGCAGGGCAGTGGCGCCATGCCCACGCTGGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 72 bp AGGAGGTGGTCCAGCTGCTGGCTGAAGGTCCTCCCCTaGACTCGGATACTGGAAGGCAGGATATCCGCCACC +
Preference number: 6 (lower is better)
Translates to: RRWSSCWLKVLP*TRILEGRISAT
Trigger: GGTGGCGGATATCCTGCCTTCCAGTATCCGAGTCCAGGGGAGGACCTTCAGCCAGCAGCTGGACCACCTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 72 bp GGAAGAGGCCCTCAGGGAACTCCGTGGTTGTGGCTCTaGTGTGGGCTCTGGTGTAGACTCTGGCTCGAGGTC +
Preference number: 6 (lower is better)
Translates to: GRGPQGTPWLWL*CGLWCRLWLEV
Trigger: GACCTCGAGCCAGAGTCTACACCAGAGCCCACACCAGAGCCACAACCACGGAGTTCCCTGAGGGCCTCTTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 72 bp GCGACGGCACATGGAAGAGGCCCTCAGGGAACTCCGTaGTTGTGGCTCTGGTGTGGGCTCTGGTGTAGACTC +
Preference number: 6 (lower is better)
Translates to: ATAHGRGPQGTP*LWLWCGLWCRL
Trigger: GAGTCTACACCAGAGCCCACACCAGAGCCACAACCACGGAGTTCCCTGAGGGCCTCTTCCATGTGCCGTCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 72 bp GGCCTCTCGCTGCAGACCATCCAACGCTCGCAGGGCTaGCTGCGCTGTTTCCAGAAAGGAAGCCATGACCAC +
Preference number: 6 (lower is better)
Translates to: GLSLQTIQRSQG*LRCFQKGSHDH
Trigger: GTGGTCATGGCTTCCTTTCTGGAAACAGCGCAGCCAGCCCTGCGAGCGTTGGATGGTCTGCAGCGAGAGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 90 bp CAGATGGTGCCTTCTGAGTTCTCCACCTGTTCCCAGCGTAAGCGCTaGACGCTCATATGGCTGGTCTCACTGCGGCGGTGGCCCACGCCT +
Preference number: 6 (lower is better)
Translates to: QMVPSEFSTCSQRKR*TLIWLVSLRRWPTP
Trigger: AGGCGTGGGCCACCGCCGCAGTGAGACCAGCCATATGAGCGTCAAGCGCTTACGCTGGGAACAGGTGGAGAACTCAGAAGGCACCATCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 90 bp TCGTCGAAGCGCGCCCGATGCTTTTTGGGAATAAAGATCCTGAGGTaGTCCAGGACTGGCCCCTGGGCCTCGCTGGGCAGCACGAGAGTG +
Preference number: 6 (lower is better)
Translates to: SSKRARCFLGIKILR*SRTGPWASLGSTRV
Trigger: CACTCTCGTGCTGCCCAGCGAGGCCCAGGGGCCAGTCCTGGACAACCTCAGGATCTTTATTCCCAAAAAGCATCGGGCGCGCTTCGACGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS CAA 90 bp AGCAGACCCTGCGACACCACCTCGTCGAAGCGCGCCCGATGCTTTTaGGGAATAAAGATCCTGAGGTTGTCCAGGACTGGCCCCTGGGCC +
Preference number: 6 (lower is better)
Translates to: SRPCDTTSSKRARCF*GIKILRLSRTGPWA
Trigger: GGCCCAGGGGCCAGTCCTGGACAACCTCAGGATCTTTATTCCCAAAAAGCATCGGGCGCGCTTCGACGAGGTGGTGTCGCAGGGTCTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS TCA 72 bp AGTCATTCTCGGGTGTCAGGAAGTCATCCACGATGCTaGGGCGGGGACCCAGCTGCTCGCTCAGCGCATCCA +
Preference number: 6 (lower is better)
Translates to: SHSRVSGSHPRC*GGDPAARSAHP
Trigger: TGGATGCGCTGAGCGAGCAGCTGGGTCCCCGCCTCAGCATCGTGGATGACTTCCTGACACCCGAGAATGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 72 bp TCCTCACTGGAAGGGGCCATGCTCTGGCAGGCCACCTaGATCTCACTGACGGTGTCATGGAGGTCAGCCAGG +
Preference number: 6 (lower is better)
Translates to: SSLEGAMLWQAT*ISLTVSWRSAR
Trigger: CCTGGCTGACCTCCATGACACCGTCAGTGAGATTCAGGTGGCCTGCCAGAGCATGGCCCCTTCCAGTGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 72 bp TCAGCCGATCCCCCAAGATGTCATCTACCTGGCAGCTaGACTCCTGGGCCTTGCGCCTGCGCTCTCTGTGCA +
Preference number: 6 (lower is better)
Translates to: SADPPRCHLPGS*TPGPCACALCA
Trigger: TGCACAGAGAGCGCAGGCGCAAGGCCCAGGAGTTCAGCTGCCAGGTAGATGACATCTTGGGGGATCGGCTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS GCA 72 bp AGGAAGTCATCCACGATGCTGAGGCGGGGACCCAGCTaGTCGCTCAGCGCATCCAGGAAGCGATCTGTGTCT +
Preference number: 6 (lower is better)
Translates to: RKSSTMLRRGPS*SLSASRKRSVS
Trigger: AGACACAGATCGCTTCCTGGATGCGCTGAGCGAGCAGCTGGGTCCCCGCCTCAGCATCGTGGATGACTTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 72 bp GACACCATCCCTGAGCTGCGTGGGCCATCCCCTGCCTaGAGGTCGCTGAGGGCTCTCTCAAATTTGCTCATG +
Preference number: 6 (lower is better)
Translates to: DTIPELRGPSPA*RSLRALSNLLM
Trigger: CATGAGCAAATTTGAGAGAGCCCTCAGCGACCTGCAGGCAGGGGATGGCCCACGCAGCTCAGGGATGGTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 72 bp GCACATGGAAGAGGCCCTCAGGGAACTCCGTGGTTGTaGCTCTGGTGTGGGCTCTGGTGTAGACTCTGGCTC +
Preference number: 6 (lower is better)
Translates to: AHGRGPQGTPWL*LWCGLWCRLWL
Trigger: GAGCCAGAGTCTACACCAGAGCCCACACCAGAGCCACAACCACGGAGTTCCCTGAGGGCCTCTTCCATGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 72 bp TTGGCTGTCAGCCGATCCCCCAAGATGTCATCTACCTaGCAGCTGAACTCCTGGGCCTTGCGCCTGCGCTCT +
Preference number: 6 (lower is better)
Translates to: LAVSRSPKMSST*QLNSWALRLRS
Trigger: AGAGCGCAGGCGCAAGGCCCAGGAGTTCAGCTGCCAGGTAGATGACATCTTGGGGGATCGGCTGACAGCCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS CAA 72 bp ACGGCACATGGAAGAGGCCCTCAGGGAACTCCGTGGTaGTGGCTCTGGTGTGGGCTCTGGTGTAGACTCTGG +
Preference number: 6 (lower is better)
Translates to: TAHGRGPQGTPW*WLWCGLWCRLW
Trigger: CCAGAGTCTACACCAGAGCCCACACCAGAGCCACAACCACGGAGTTCCCTGAGGGCCTCTTCCATGTGCCGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 90 bp GCTGGGCAGCACGAGAGTGAGGGTCCACACCAGCTCATCCACCCGTaGCTCGGCAGCGAACTGCTTCAGTGCAGTAAACACCTGCTCCTT +
Preference number: 6 (lower is better)
Translates to: AGQHESEGPHQLIHP*LGSELLQCSKHLLL
Trigger: AAGGAGCAGGTGTTTACTGCACTGAAGCAGTTCGCTGCCGAGCAACGGGTGGATGAGCTGGTGTGGACCCTCACTCTCGTGCTGCCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS TCA 72 bp CTTCTGAGTTCTCCACCTGTTCCCAGCGTAAGCGCTTaGCGCTCATATGGCTGGTCTCACTGCGGCGGTGGC +
Preference number: 6 (lower is better)
Translates to: LLSSPPVPSVSA*RSYGWSHCGGG
Trigger: GCCACCGCCGCAGTGAGACCAGCCATATGAGCGTCAAGCGCTTACGCTGGGAACAGGTGGAGAACTCAGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 72 bp TCTTGTGGGACAAGATCTCCACCACTTCCTTCTTCCTaGAGGGCTCCGGGCCGGGCACTGGCTTCGGAGGTT +
Preference number: 6 (lower is better)
Translates to: SCGTRSPPLPSS*RAPGRALASEV
Trigger: AACCTCCGAAGCCAGTGCCCGGCCCGGAGCCCTTCAGGAAGAAGGAAGTGGTGGAGATCTTGTCCCACAAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 72 bp AAGGGGCCATGCTCTGGCAGGCCACCTGAATCTCACTaGCGGTGTCATGGAGGTCAGCCAGGTCACCAGTCA +
Preference number: 6 (lower is better)
Translates to: KGPCSGRPPESH*RCHGGQPGHQS
Trigger: TGACTGGTGACCTGGCTGACCTCCATGACACCGTCAGTGAGATTCAGGTGGCCTGCCAGAGCATGGCCCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 72 bp TCTCGCTGCAGACCATCCAACGCTCGCAGGGCTGGCTaGGCTGTTTCCAGAAAGGAAGCCATGACCACAGCA +
Preference number: 6 (lower is better)
Translates to: SRCRPSNARRAG*AVSRKEAMTTA
Trigger: TGCTGTGGTCATGGCTTCCTTTCTGGAAACAGCGCAGCCAGCCCTGCGAGCGTTGGATGGTCTGCAGCGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 72 bp CCGGGCACTGGCTTCGGAGGTTTCTGGGTGCCGAAGTaGAGCTCCAGGTCGAGGTATTTCACCATGTCACTC +
Preference number: 6 (lower is better)
Translates to: PGTGFGGFWVPK*SSRSRYFTMSL
Trigger: GAGTGACATGGTGAAATACCTCGACCTGGAGCTCCACTTCGGCACCCAGAAACCTCCGAAGCCAGTGCCCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 72 bp TCCCCCAAGATGTCATCTACCTGGCAGCTGAACTCCTaGGCCTTGCGCCTGCGCTCTCTGTGCACAGCATCT +
Preference number: 6 (lower is better)
Translates to: SPKMSSTWQLNS*ALRLRSLCTAS
Trigger: AGATGCTGTGCACAGAGAGCGCAGGCGCAAGGCCCAGGAGTTCAGCTGCCAGGTAGATGACATCTTGGGGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS CAA 72 bp CCTTCTGAGTTCTCCACCTGTTCCCAGCGTAAGCGCTaGACGCTCATATGGCTGGTCTCACTGCGGCGGTGG +
Preference number: 6 (lower is better)
Translates to: PSEFSTCSQRKR*TLIWLVSLRRW
Trigger: CCACCGCCGCAGTGAGACCAGCCATATGAGCGTCAAGCGCTTACGCTGGGAACAGGTGGAGAACTCAGAAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 90 bp CCTGATGTGCCGACCAGGCTGGGGACTGGTGGAGAGGCCCGGGATTaGGACATGGTCCCTATCTTCCCTTTGAAGCTGCTGTTCAGTCGA +
Preference number: 6 (lower is better)
Translates to: PDVPTRLGTGGEARD*DMVPIFPLKLLFSR
Trigger: TCGACTGAACAGCAGCTTCAAAGGGAAGATAGGGACCATGTCCAAATCCCGGGCCTCTCCACCAGTCCCCAGCCTGGTCGGCACATCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 90 bp CCCTCCTCGCTGCTGCTGACACACTCGCTAGCGCTGCTCCTCTCGTaGGTCACAAAGCTGCCCTGGTCATCATGGAAGCTCATCTCTTCA +
Preference number: 6 (lower is better)
Translates to: PSSLLLTHSLALLLS*VTKLPWSSWKLISS
Trigger: TGAAGAGATGAGCTTCCATGATGACCAGGGCAGCTTTGTGACCAACGAGAGGAGCAGCGCTAGCGAGTGTGTCAGCAGCAGCGAGGAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 90 bp CGTTGCTCGGCAGCGAACTGCTTCAGTGCAGTAAACACCTGCTCCTaGGCTGTCAGCCGATCCCCCAAGATGTCATCTACCTGGCAGCTG +
Preference number: 6 (lower is better)
Translates to: RCSAANCFSAVNTCS*AVSRSPKMSSTWQL
Trigger: CAGCTGCCAGGTAGATGACATCTTGGGGGATCGGCTGACAGCCAAGGAGCAGGTGTTTACTGCACTGAAGCAGTTCGCTGCCGAGCAACG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS GCA 72 bp ACGAGAGTGAGGGTCCACACCAGCTCATCCACCCGTTaGTCGGCAGCGAACTGCTTCAGTGCAGTAAACACC +
Preference number: 6 (lower is better)
Translates to: TRVRVHTSSSTR*SAANCFSAVNT
Trigger: GGTGTTTACTGCACTGAAGCAGTTCGCTGCCGAGCAACGGGTGGATGAGCTGGTGTGGACCCTCACTCTCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS CCA 72 bp CTGCCAGGCAGGACAGATTCGATCCAGACCGGTCCATaGCCTCGCAGAGTGAAGCCGAAACTCTTGTTGCCT +
Preference number: 6 (lower is better)
Translates to: LPGRTDSIQTGP*PRRVKPKLLLP
Trigger: AGGCAACAAGAGTTTCGGCTTCACTCTGCGAGGCCATGGACCGGTCTGGATCGAATCTGTCCTGCCTGGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 72 bp TCCAATCCATTGAGGAAGAGGATCCGGTCACCTGACTaGAGGGAGGCATTTTCAGCCGGGCTGCCAGGCAGG +
Preference number: 6 (lower is better)
Translates to: SNPLRKRIRSPD*REAFSAGLPGR
Trigger: CCTGCCTGGCAGCCCGGCTGAAAATGCCTCCCTCAAGTCAGGTGACCGGATCCTCTTCCTCAATGGATTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 72 bp GGCATGGCGCCACTGCCCTGCAACATGGACACCACCTaGTCGTGGGAGCAGTTCCTCATGTCCAATCCATTG +
Preference number: 6 (lower is better)
Translates to: GMAPLPCNMDTT*SWEQFLMSNPL
Trigger: CAATGGATTGGACATGAGGAACTGCTCCCACGACAAGGTGGTGTCCATGTTGCAGGGCAGTGGCGCCATGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 72 bp CTGCTGCTGACACACTCGCTAGCGCTGCTCCTCTCGTaGGTCACAAAGCTGCCCTGGTCATCATGGAAGCTC +
Preference number: 6 (lower is better)
Translates to: LLLTHSLALLLS*VTKLPWSSWKL
Trigger: GAGCTTCCATGATGACCAGGGCAGCTTTGTGACCAACGAGAGGAGCAGCGCTAGCGAGTGTGTCAGCAGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 72 bp CACGAGAGTGAGGGTCCACACCAGCTCATCCACCCGTaGCTCGGCAGCGAACTGCTTCAGTGCAGTAAACAC +
Preference number: 6 (lower is better)
Translates to: HESEGPHQLIHP*LGSELLQCSKH
Trigger: GTGTTTACTGCACTGAAGCAGTTCGCTGCCGAGCAACGGGTGGATGAGCTGGTGTGGACCCTCACTCTCGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS TCA 72 bp CATGTCCAATCCATTGAGGAAGAGGATCCGGTCACCTaGCTTGAGGGAGGCATTTTCAGCCGGGCTGCCAGG +
Preference number: 6 (lower is better)
Translates to: HVQSIEEEDPVT*LEGGIFSRAAR
Trigger: CCTGGCAGCCCGGCTGAAAATGCCTCCCTCAAGTCAGGTGACCGGATCCTCTTCCTCAATGGATTGGACATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 72 bp TGGCGGGTGTGTCCAGGACGGGGTAGACATCCACGATaGGGGTATCGATGTTCCTGTGCTGAAAGAAGCGCT +
Preference number: 6 (lower is better)
Translates to: WRVCPGRGRHPR*GYRCSCAERSA
Trigger: AGCGCTTCTTTCAGCACAGGAACATCGATACCCTCATCGTGGATGTCTACCCCGTCCTGGACACACCCGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 72 bp AGACCCTGCGACACCACCTCGTCGAAGCGCGCCCGATaGTTTTTGGGAATAAAGATCCTGAGGTTGTCCAGG +
Preference number: 6 (lower is better)
Translates to: RPCDTTSSKRAR*FLGIKILRLSR
Trigger: CCTGGACAACCTCAGGATCTTTATTCCCAAAAAGCATCGGGCGCGCTTCGACGAGGTGGTGTCGCAGGGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS CAA 72 bp AAGGTAGCCTGGAAGTGTAGACTGCGCAGGCGGGTCTaGTATTCGGGAACCGACAGCATCTGCAGGACGAAC +
Preference number: 6 (lower is better)
Translates to: KVAWKCRLRRRV*YSGTDSICRTN
Trigger: GTTCGTCCTGCAGATGCTGTCGGTTCCCGAATACAAGACCCGCCTGCGCAGTCTACACTTCCAGGCTACCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 72 bp TGCGACACCACCTCGTCGAAGCGCGCCCGATGCTTTTaGGGAATAAAGATCCTGAGGTTGTCCAGGACTGGC +
Preference number: 6 (lower is better)
Translates to: CDTTSSKRARCF*GIKILRLSRTG
Trigger: GCCAGTCCTGGACAACCTCAGGATCTTTATTCCCAAAAAGCATCGGGCGCGCTTCGACGAGGTGGTGTCGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS CAA 90 bp TTCCTCATGTCCAATCCATTGAGGAAGAGGATCCGGTCACCTGACTaGAGGGAGGCATTTTCAGCCGGGCTGCCAGGCAGGACAGATTCG +
Preference number: 6 (lower is better)
Translates to: FLMSNPLRKRIRSPD*REAFSAGLPGRTDS
Trigger: CGAATCTGTCCTGCCTGGCAGCCCGGCTGAAAATGCCTCCCTCAAGTCAGGTGACCGGATCCTCTTCCTCAATGGATTGGACATGAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 90 bp ATGGCCAACACAAACTCCAGGATCTTGGCGAGTTTCCGGCTGTTTTaGAGCTCCAGAGATGCCTGTCGCAGACACTCGAGGCTGCCTCGT +
Preference number: 6 (lower is better)
Translates to: MANTNSRILASFRLF*SSRDACRRHSRLPR
Trigger: ACGAGGCAGCCTCGAGTGTCTGCGACAGGCATCTCTGGAGCTCAAAAACAGCCGGAAACTCGCCAAGATCCTGGAGTTTGTGTTGGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 72 bp CAAACTCCAGGATCTTGGCGAGTTTCCGGCTGTTTTTaGGCTCCAGAGATGCCTGTCGCAGACACTCGAGGC +
Preference number: 6 (lower is better)
Translates to: QTPGSWRVSGCF*APEMPVADTRG
Trigger: GCCTCGAGTGTCTGCGACAGGCATCTCTGGAGCTCAAAAACAGCCGGAAACTCGCCAAGATCCTGGAGTTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS GCA 72 bp AGACCCTGCGACACCACCTCGTCGAAGCGCGCCCGATaGTTTTTGGGAATAAAGATCCTAAAGTGCCGAGAG +
Preference number: 6 (lower is better)
Translates to: RPCDTTSSKRAR*FLGIKILKCRE
Trigger: CTCTCGGCACTTTAGGATCTTTATTCCCAAAAAGCATCGGGCGCGCTTCGACGAGGTGGTGTCGCAGGGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS CCA 72 bp GCTCGCCAGGGGTCAGCTTCAGGTGCGCTAGGAGAATaGAGGTATTGTAGGCCTTCTTGTGGGACAAGATCT +
Preference number: 6 (lower is better)
Translates to: ARQGSASGALGE*RYCRPSCGTRS
Trigger: AGATCTTGTCCCACAAGAAGGCCTACAATACCTCCATTCTCCTAGCGCACCTGAAGCTGACCCCTGGCGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 72 bp GAGGCCCGGGATTTGGACATGGTCCCTATCTTCCCTTaGAAGCTGCTGTTCAGTCGAGACTCGAGCTCTGCA +
Preference number: 6 (lower is better)
Translates to: EARDLDMVPIFP*KLLFSRDSSSA
Trigger: TGCAGAGCTCGAGTCTCGACTGAACAGCAGCTTCAAAGGGAAGATAGGGACCATGTCCAAATCCCGGGCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 72 bp GAAAAGATGCCAAAGAAGGCCTCTGAGGTAGTGGCCTaGGAGTCCTCTCCGAAGAAGGCCAGAGCCTTCCCT +
Preference number: 6 (lower is better)
Translates to: EKMPKKASEVVA*ESSPKKARAFP
Trigger: AGGGAAGGCTCTGGCCTTCTTCGGAGAGGACTCCAAGGCCACTACCTCAGAGGCCTTCTTTGGCATCTTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 72 bp GCAGCGAACTGCTTCAGTGCAGTAAACACCTGCTCCTaGGCTGTCAGCCGATCCCCCAAGATGTCATCTACC +
Preference number: 6 (lower is better)
Translates to: AANCFSAVNTCS*AVSRSPKMSST
Trigger: GGTAGATGACATCTTGGGGGATCGGCTGACAGCCAAGGAGCAGGTGTTTACTGCACTGAAGCAGTTCGCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110733.9
CDS CAA 72 bp TGCGACACCACCTCGTCGAAGCGCGCCCGATGCTTTTaGGGAATAAAGATCCTAAAGTGCCGAGAGAAGCCC +
Preference number: 6 (lower is better)
Translates to: CDTTSSKRARCF*GIKILKCREKP
Trigger: GGGCTTCTCTCGGCACTTTAGGATCTTTATTCCCAAAAAGCATCGGGCGCGCTTCGACGAGGTGGTGTCGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120825.2
CDS CCA 72 bp TGTCATAGTCAGAGTCTTCCCCAAGCTGACCCCAGATaGTGCCTTCTGAGTTCTCCACCTGTTCCCAGCGTA +
Preference number: 6 (lower is better)
Translates to: CHSQSLPQADPR*CLLSSPPVPSV
Trigger: TACGCTGGGAACAGGTGGAGAACTCAGAAGGCACCATCTGGGGTCAGCTTGGGGAAGACTCTGACTATGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 72 bp ACCTTGTCGTGGGAGCAGTTCCTCATGTCCAATCCATaGAGGAAGAGGATCCGGTCACCTGACTTGAGGGAG +
Preference number: 6 (lower is better)
Translates to: TLSWEQFLMSNP*RKRIRSPDLRE
Trigger: CTCCCTCAAGTCAGGTGACCGGATCCTCTTCCTCAATGGATTGGACATGAGGAACTGCTCCCACGACAAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 72 bp ACAAACTCCAGGATCTTGGCGAGTTTCCGGCTGTTTTaGAGCTCCAGAGATGCCTGTCGCAGACACTCGAGG +
Preference number: 6 (lower is better)
Translates to: TNSRILASFRLF*SSRDACRRHSR
Trigger: CCTCGAGTGTCTGCGACAGGCATCTCTGGAGCTCAAAAACAGCCGGAAACTCGCCAAGATCCTGGAGTTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 90 bp ATGAATTCTGAAAAGATGCCAAAGAAGGCCTCTGAGGTAGTGGCCTaGGAGTCCTCTCCGAAGAAGGCCAGAGCCTTCCCTAGCTCCTCC +
Preference number: 6 (lower is better)
Translates to: MNSEKMPKKASEVVA*ESSPKKARAFPSSS
Trigger: GGAGGAGCTAGGGAAGGCTCTGGCCTTCTTCGGAGAGGACTCCAAGGCCACTACCTCAGAGGCCTTCTTTGGCATCTTTTCAGAATTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CCA 72 bp GCTGGCTTAGCGATTTGGCAAGGATGTGCAGAAAGGTaGACTTCCCGTCCACTGTCTTGGTGGAGTTTAGCT +
Preference number: 6 (lower is better)
Translates to: AGLAIWQGCAER*TSRPLSWWSLA
Trigger: AGCTAAACTCCACCAAGACAGTGGACGGGAAGTCCACCTTTCTGCACATCCTTGCCAAATCGCTAAGCCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS TCA 72 bp AGCCAGTGGTCTTGTTGGTCTTGGGCTGTCCATCGTTaGGATAGTTACCCATGGCCAACACAAACTCCAGGA +
Preference number: 6 (lower is better)
Translates to: SQWSCWSWAVHR*DSYPWPTQTPG
Trigger: TCCTGGAGTTTGTGTTGGCCATGGGTAACTATCTCAACGATGGACAGCCCAAGACCAACAAGACCACTGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 72 bp TCCACTGTCTTGGTGGAGTTTAGCTCGGTCAGGAAGTaGATCTTGAAGCCAGTGGTCTTGTTGGTCTTGGGC +
Preference number: 6 (lower is better)
Translates to: STVLVEFSSVRK*ILKPVVLLVLG
Trigger: GCCCAAGACCAACAAGACCACTGGCTTCAAGATCAACTTCCTGACCGAGCTAAACTCCACCAAGACAGTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2
CDS CAA 72 bp AGGATGTGCAGAAAGGTGGACTTCCCGTCCACTGTCTaGGTGGAGTTTAGCTCGGTCAGGAAGTTGATCTTG +
Preference number: 6 (lower is better)
Translates to: RMCRKVDFPSTV*VEFSSVRKLIL
Trigger: CAAGATCAACTTCCTGACCGAGCTAAACTCCACCAAGACAGTGGACGGGAAGTCCACCTTTCTGCACATCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010969.15
ENSMUST00000110733.9
ENSMUST00000120825.2