RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GRIA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033981

Ensembl transcript IDs: ENSMUST00000075316.10, ENSMUST00000107745.8, ENSMUST00000192463.2

Found 258 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTCTGGAGTCATAACACGTCCATTTTCTCCAGTACTTCCTGTAATTaGCAGCCTTGCCTTGTTCCTCGTGGCAGCGCTCAAGGTCATCCC +
Preference number: 1 (lower is better)
Translates to: FWSHNTSIFSSTSCN*QPCLVPRGSAQGHP
Trigger: GGGATGACCTTGAGCGCTGCCACGAGGAACAAGGCAAGGCTGTCAATTACAGGAAGTACTGGAGAAAATGGACGTGTTATGACTCCAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR TCA 90 bp AAGGCACTCAGAAGGTTCCTATCAATCACGAGAGATCAGTCACACTaGCATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGCA +
Preference number: 1 (lower is better)
Translates to: KALRRFLSITRDQSH*HSFPCQDSRKGQHA
Trigger: TGCATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTGACTGATCTCTCGTGATTGATAGGAACCTTCTGAGTGCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR CCA 90 bp GATATACCTGGGCCCACCCCTGTTATCAGCAGACACCTGCACTCATaGGCATATTCCCACATCAGCACGCACATACATACACTTCATTTA +
Preference number: 1 (lower is better)
Translates to: DIPGPTPVISRHLHS*AYSHISTHIHTLHL
Trigger: TAAATGAAGTGTATGTATGTGCGTGCTGATGTGGGAATATGCCCATGAGTGCAGGTGTCTGCTGATAACAGGGGTGGGCCCAGGTATATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR GCA 90 bp GACATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGCACTaGTTTGGGAAATTCTGGAGTCATAACACGTCCATTTTCTCCAGT +
Preference number: 1 (lower is better)
Translates to: DIHSHARTHVRDSMH*FGKFWSHNTSIFSS
Trigger: ACTGGAGAAAATGGACGTGTTATGACTCCAGAATTTCCCAAAGCAGTGCATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR CCA 90 bp TTGGTGCTGGAGGATTGCTCAGTGGTTAAGAAAGAACACTTGCAGTaGACCCAGGCTAGTTTCTCCAAAAACCATTTTAGGAGCTGGCAA +
Preference number: 1 (lower is better)
Translates to: LVLEDCSVVKKEHLQ*TQASFSKNHFRSWQ
Trigger: TTGCCAGCTCCTAAAATGGTTTTTGGAGAAACTAGCCTGGGTCCACTGCAAGTGTTCTTTCTTAACCACTGAGCAATCCTCCAGCACCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR GCA 90 bp TGTTATTGGTGCTGGAGGATTGCTCAGTGGTTAAGAAAGAACACTTaGAGTGGACCCAGGCTAGTTTCTCCAAAAACCATTTTAGGAGCT +
Preference number: 1 (lower is better)
Translates to: CYWCWRIAQWLRKNT*SGPRLVSPKTILGA
Trigger: AGCTCCTAAAATGGTTTTTGGAGAAACTAGCCTGGGTCCACTGCAAGTGTTCTTTCTTAACCACTGAGCAATCCTCCAGCACCAATAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR GCA 90 bp GTTGGATCAGAATACGTGTGTGATGCAAACATGGAGATTAACACATaGTCTCCTCTTTCGTTTGAGAGATTCCTAGTTCCTTGCTATGGT +
Preference number: 1 (lower is better)
Translates to: VGSEYVCDANMEINT*SPLSFERFLVPCYG
Trigger: ACCATAGCAAGGAACTAGGAATCTCTCAAACGAAAGAGGAGAGCATGTGTTAATCTCCATGTTTGCATCACACACGTATTCTGATCCAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR TCA 90 bp AGCTTGTGGAAACTTTCTGAGATGTTATGTTTACATAAATGTATTTaGACCTCCATGGGCTTGGAGTGTTGTGTGCTGTTCGTGGGTTGT +
Preference number: 1 (lower is better)
Translates to: SLWKLSEMLCLHKCI*TSMGLECCVLFVGC
Trigger: ACAACCCACGAACAGCACACAACACTCCAAGCCCATGGAGGTTCAAATACATTTATGTAAACATAACATCTCAGAAAGTTTCCACAAGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR TCA 90 bp CTAAATAGACGTGAGGCCAATACAGATAGCCTGCATTTACTCCACTaGAAAACGAAGGCACAGATGTGTAAGAAAAATGTGCAGGAAGTA +
Preference number: 1 (lower is better)
Translates to: LNRREANTDSLHLLH*KTKAQMCKKNVQEV
Trigger: TACTTCCTGCACATTTTTCTTACACATCTGTGCCTTCGTTTTTCAGTGGAGTAAATGCAGGCTATCTGTATTGGCCTCACGTCTATTTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR TCA 90 bp AAGAAAGGGATACAGACAGGACACAAGACATTCACAAATTCTTCATaGTCCACATTAGCTCTGGGTACTTCTTTAGAGCTTGTGGAAACT +
Preference number: 1 (lower is better)
Translates to: KKGIQTGHKTFTNSS*STLALGTSLELVET
Trigger: AGTTTCCACAAGCTCTAAAGAAGTACCCAGAGCTAATGTGGATCATGAAGAATTTGTGAATGTCTTGTGTCCTGTCTGTATCCCTTTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR TCA 90 bp TCCCAGGAAAATTGCTATGCCTCACTACAAGCCATGAGATTTAGATaGATAAAAGTACAATGTATGTCTTCACCAAGCATCCAAACAGGG +
Preference number: 1 (lower is better)
Translates to: SQENCYASLQAMRFR*IKVQCMSSPSIQTG
Trigger: CCCTGTTTGGATGCTTGGTGAAGACATACATTGTACTTTTATTCATCTAAATCTCATGGCTTGTAGTGAGGCATAGCAATTTTCCTGGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR CCA 90 bp CAATATGCTACATATTGTTTGAAGAAACTTGCTAACCACTCCCACTaGGCTATTTTGAACTCTGAATTTACACAGAAGTGCTTCAGACGG +
Preference number: 1 (lower is better)
Translates to: QYATYCLKKLANHSH*AILNSEFTQKCFRR
Trigger: CCGTCTGAAGCACTTCTGTGTAAATTCAGAGTTCAAAATAGCCCAGTGGGAGTGGTTAGCAAGTTTCTTCAAACAATATGTAGCATATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR GCA 90 bp TTGAGAGAGCTGTCACCACTCTTTGTTGAGCACTTATCACTTATATaGACACAGACACATCTATACAGCAATATACTGATGCATTGTTAC +
Preference number: 1 (lower is better)
Translates to: LRELSPLFVEHLSLI*TQTHLYSNILMHCY
Trigger: GTAACAATGCATCAGTATATTGCTGTATAGATGTGTCTGTGTGCATATAAGTGATAAGTGCTCAACAAAGAGTGGTGACAGCTCTCTCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR GCA 90 bp AGAGGAAATTATGACTCCATGTTAGAGGCAATTTCTCATGAATGTTaGCAAGACTTTTGTCCTGAAGGAAAGTACAATGTCTTCTACAGA +
Preference number: 1 (lower is better)
Translates to: RGNYDSMLEAISHEC*QDFCPEGKYNVFYR
Trigger: TCTGTAGAAGACATTGTACTTTCCTTCAGGACAAAAGTCTTGGCAACATTCATGAGAAATTGCCTCTAACATGGAGTCATAATTTCCTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR CCA 90 bp AACTTTCTGAGATGTTATGTTTACATAAATGTATTTGAACCTCCATaGGCTTGGAGTGTTGTGTGCTGTTCGTGGGTTGTTCTTTTTAAA +
Preference number: 1 (lower is better)
Translates to: NFLRCYVYINVFEPP*AWSVVCCSWVVLFK
Trigger: TTTAAAAAGAACAACCCACGAACAGCACACAACACTCCAAGCCCATGGAGGTTCAAATACATTTATGTAAACATAACATCTCAGAAAGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR TCA 90 bp GACACATCTATACAGCAATATACTGATGCATTGTTACATGGATATTaGACTAGATTTTACTGCCTAAAACTGAGCTCTGTGTTAGCCAAT +
Preference number: 1 (lower is better)
Translates to: DTSIQQYTDALLHGY*TRFYCLKLSSVLAN
Trigger: ATTGGCTAACACAGAGCTCAGTTTTAGGCAGTAAAATCTAGTTCAATATCCATGTAACAATGCATCAGTATATTGCTGTATAGATGTGTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR-3UTR CCA 90 bp TTCTGCTTCTTCAGAGAACCTCCTGCATCCTCCAGGAACTCTCCTGAATGTGGAGAACCTCCATGGGCTTaGAGTGTTGTGTGCTGTTCG +
Preference number: 2 (lower is better)
Translates to: FCFFREPPASSRNSPECGEPPWA*SVVCCS
Trigger: CGAACAGCACACAACACTCCAAGCCCATGGAGGTTC...TCCACATTCAGGAGAGTTCCTGGAGGATGCAGGAGGTTCTCTGAAGAAGCAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR-3UTR TCA 90 bp AGTCACACTGACATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGCACAGTACTTCCTGTAATTaGCAGCCTTGCCTTGTTCCT +
Preference number: 2 (lower is better)
Translates to: SHTDIHSHARTHVRDSMHSTSCN*QPCLVP
Trigger: AGGAACAAGGCAAGGCTGTCAATTACAGGAAGTACT...GTGCATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR-3UTR TCA 90 bp GCAGACACCTGCACTCATGGGCATATTCCCACATCAGCACGCACATACATACACGTCACCACTCTTTGTTaGGCACTTATCACTTATATG +
Preference number: 2 (lower is better)
Translates to: ADTCTHGHIPTSARTYIHVTTLC*ALITYM
Trigger: CATATAAGTGATAAGTGCTCAACAAAGAGTGGTGAC...GTGTATGTATGTGCGTGCTGATGTGGGAATATGCCCATGAGTGCAGGTGTCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR-3UTR TCA 90 bp TTCTGCTTCTTCAGAGAACCTCCTGCATCCTCCAGGAACTCTCCTGAATGTGGAGAGGGAGGGATGCAATaGAATAAGATGGATGAAACT +
Preference number: 2 (lower is better)
Translates to: FCFFREPPASSRNSPECGEGGMQ*NKMDET
Trigger: AGTTTCATCCATCTTATTTCATTGCATCCCTCCCTC...TCCACATTCAGGAGAGTTCCTGGAGGATGCAGGAGGTTCTCTGAAGAAGCAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR-3UTR CCA 90 bp GCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAATTGCCTTGTTCCTCGTaGCAGCGCTCAAGGTCATCC +
Preference number: 2 (lower is better)
Translates to: AERKAFKISDASHHFDNKLPCSS*QRSRSS
Trigger: GGATGACCTTGAGCGCTGCCACGAGGAACAAGGCAA...TTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR-3UTR TCA 90 bp ACCCAGGCTAGTTTCTCCAAAAACCATTTTAGGAGCTGGCAAGCATCTATAACCAGAGATCAGTCACACTaGCATTCATTCCCATGCCAG +
Preference number: 2 (lower is better)
Translates to: TQASFSKNHFRSWQASITRDQSH*HSFPCQ
Trigger: CTGGCATGGGAATGAATGTCAGTGTGACTGATCTCT...GGTTATAGATGCTTGCCAGCTCCTAAAATGGTTTTTGGAGAAACTAGCCTGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR-3UTR CCA 90 bp TTTGACAATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATTGCCTTGTTCCTCGTaGCAGCGCTCAAGGTCATCC +
Preference number: 2 (lower is better)
Translates to: FDNKHTRKPLCKALRRFLLPCSS*QRSRSS
Trigger: GGATGACCTTGAGCGCTGCCACGAGGAACAAGGCAA...TAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATTGTCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR-3UTR CCA 90 bp GCAGACACCTGCACTCATGGGCATATTCCCACATCAGCACGCACATACATACACGTGTCTTTAGATCACTaGATGTATGACCAAACTGTA +
Preference number: 2 (lower is better)
Translates to: ADTCTHGHIPTSARTYIHVSLDH*MYDQTV
Trigger: TACAGTTTGGTCATACATCCAGTGATCTAAAGACAC...GTGTATGTATGTGCGTGCTGATGTGGGAATATGCCCATGAGTGCAGGTGTCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR CAA 90 bp TCGGATGCCTCTCACCACTTTGACAATAAACACACAAGGAAACCATaGTGTAAGGCACTCAGAAGGTTCCTATCAATCACGAGAGATCAG +
Preference number: 2 (lower is better)
Translates to: SDASHHFDNKHTRKP*CKALRRFLSITRDQ
Trigger: CTGATCTCTCGTGATTGATAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR CAA 90 bp ATGTTATTGGTGCTGGAGGATTGCTCAGTGGTTAAGAAAGAACACTaGCAGTGGACCCAGGCTAGTTTCTCCAAAAACCATTTTAGGAGC +
Preference number: 2 (lower is better)
Translates to: MLLVLEDCSVVKKEH*QWTQASFSKNHFRS
Trigger: GCTCCTAAAATGGTTTTTGGAGAAACTAGCCTGGGTCCACTGCAAGTGTTCTTTCTTAACCACTGAGCAATCCTCCAGCACCAATAACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR-3UTR GCA 90 bp AAAGCCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAACACACAAGGAGGGACAGCATGCACTaGTTTGGGAAATTCTGGAGT +
Preference number: 2 (lower is better)
Translates to: KAFKISDASHHFDNKHTRRDSMH*FGKFWS
Trigger: ACTCCAGAATTTCCCAAAGCAGTGCATGCTGTCCCT...CCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGGCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR-3UTR GCA 90 bp ACCCAGGCTAGTTTCTCCAAAAACCATTTTAGGAGCTGGCAAGCATCTATAACCACTAACAATAGTGGCTaGGGAAACGGGTTTGTTGTC +
Preference number: 2 (lower is better)
Translates to: TQASFSKNHFRSWQASITTNNSG*GNGFVV
Trigger: GACAACAAACCCGTTTCCGCAGCCACTATTGTTAGT...GGTTATAGATGCTTGCCAGCTCCTAAAATGGTTTTTGGAGAAACTAGCCTGGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR-3UTR CCA 90 bp AGTGGAAAGTTACAGAGATGGAACAGTATCCACATTACACAAATTAAAGTGCTCTTGCCTTGTTCCTCGTaGCAGCGCTCAAGGTCATCC +
Preference number: 2 (lower is better)
Translates to: SGKLQRWNSIHITQIKVLLPCSS*QRSRSS
Trigger: GGATGACCTTGAGCGCTGCCACGAGGAACAAGGCAA...GAGCACTTTAATTTGTGTAATGTGGATACTGTTCCATCTCTGTAACTTTCCACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR-3UTR CCA 90 bp GCAGACACCTGCACTCATGGGCATATTCCCACATCAGCACGCACATACATACACCATGTAGAATGCAAGTaGCTACTGTTAAATCTTACA +
Preference number: 2 (lower is better)
Translates to: ADTCTHGHIPTSARTYIHHVECK*LLLNLT
Trigger: TGTAAGATTTAACAGTAGCCACTTGCATTCTACATG...GTGTATGTATGTGCGTGCTGATGTGGGAATATGCCCATGAGTGCAGGTGTCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR-3UTR TCA 90 bp TGTCAAGTGTGCTTAGTCATTATGAATCAAGAGACTAACAATAGTGGCTGCGGAAGAGATCAGTCACACTaGCATTCATTCCCATGCCAG +
Preference number: 2 (lower is better)
Translates to: CQVCLVIMNQETNNSGCGRDQSH*HSFPCQ
Trigger: CTGGCATGGGAATGAATGTCAGTGTGACTGATCTCT...TCCGCAGCCACTATTGTTAGTCTCTTGATTCATAATGACTAAGCACACTTGACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR CAA 90 bp TGGCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTTaGACAATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAA +
Preference number: 2 (lower is better)
Translates to: WLKEKPSRYRMPLTT*TINTQGNHCVRHSE
Trigger: TTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR CAA 90 bp GGTTTAATTCAATATTTCCCAAACCATCTAGTGCTCCCTCAACTTTaGTTCAGGGTCTCAGAGCAGTTTGTGTATACTTACCCATCCTCC +
Preference number: 2 (lower is better)
Translates to: GLIQYFPNHLVLPQL*FRVSEQFVYTYPSS
Trigger: GGAGGATGGGTAAGTATACACAAACTGCTCTGAGACCCTGAACAAAAGTTGAGGGAGCACTAGATGGTTTGGGAAATATTGAATTAAACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR-3UTR GCA 90 bp TTTGACAATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTAAGGGACAGCATGCACTaGTTTGGGAAATTCTGGAGT +
Preference number: 2 (lower is better)
Translates to: FDNKHTRKPLCKALRRFLRDSMH*FGKFWS
Trigger: ACTCCAGAATTTCCCAAAGCAGTGCATGCTGTCCCT...TAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATTGTCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR-3UTR TCA 90 bp GCTTCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCAGTACTTCCTGTAATTaGCAGCCTTGCCTTGTTCCT +
Preference number: 2 (lower is better)
Translates to: ASSDIEVEKDALFVINLSSTSCN*QPCLVP
Trigger: AGGAACAAGGCAAGGCTGTCAATTACAGGAAGTACT...GGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGAAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR-3UTR TCA 90 bp TTTGACAATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTAAGTACTTCCTGTAATTaGCAGCCTTGCCTTGTTCCT +
Preference number: 2 (lower is better)
Translates to: FDNKHTRKPLCKALRRFLSTSCN*QPCLVP
Trigger: AGGAACAAGGCAAGGCTGTCAATTACAGGAAGTACT...TAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATTGTCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR-3UTR CCA 90 bp GCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAATACTGCAAGATTTACTaGGGTTCTTGGAATCACCTC +
Preference number: 2 (lower is better)
Translates to: AERKAFKISDASHHFDNKYCKIY*GSWNHL
Trigger: GAGGTGATTCCAAGAACCCCAGTAAATCTTGCAGTA...TTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192463.2
3UTR-3UTR CCA 90 bp TTAGTCATTATGAATCAAGAGACTAACAATAGTGGCTGCGGAAACGGGTTTGTTATTAAATTACAAGACTaGAGTCTCCTCTGTTTCCTT +
Preference number: 2 (lower is better)
Translates to: LVIMNQETNNSGCGNGFVIKLQD*SLLCFL
Trigger: AAGGAAACAGAGGAGACTCCAGTCTTGTAATTTAAT...AACAAACCCGTTTCCGCAGCCACTATTGTTAGTCTCTTGATTCATAATGACTAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
3UTR GCA 72 bp ATATACCTGGGCCCACCCCTGTTATCAGCAGACACCTaGACTCATGGGCATATTCCCACATCAGCACGCACA +
Preference number: 3 (lower is better)
Translates to: IYLGPPLLSADT*THGHIPTSART
Trigger: TGTGCGTGCTGATGTGGGAATATGCCCATGAGTGCAGGTGTCTGCTGATAACAGGGGTGGGCCCAGGTATAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR CCA 72 bp GGGCCCACCCCTGTTATCAGCAGACACCTGCACTCATaGGCATATTCCCACATCAGCACGCACATACATACA +
Preference number: 3 (lower is better)
Translates to: GPTPVISRHLHS*AYSHISTHIHT
Trigger: TGTATGTATGTGCGTGCTGATGTGGGAATATGCCCATGAGTGCAGGTGTCTGCTGATAACAGGGGTGGGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR-3UTR CAA 90 bp AGTACTTCCATGTTAGCTGTGCATGTCCACCACGCTTCCTCTGACATCGAAGTAATTGACAGCCTTGCCTaGTTCCTCGTGGCAGCGCTC +
Preference number: 3 (lower is better)
Translates to: STSMLAVHVHHASSDIEVIDSLA*FLVAAL
Trigger: GAGCGCTGCCACGAGGAACAAGGCAAGGCTGTCAAT...TACTTCGATGTCAGAGGAAGCGTGGTGGACATGCACAGCTAACATGGAAGTACT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR GCA 72 bp TCCCATGCCAGGACTCACGTAAGGGACAGCATGCACTaGTTTGGGAAATTCTGGAGTCATAACACGTCCATT +
Preference number: 3 (lower is better)
Translates to: SHARTHVRDSMH*FGKFWSHNTSI
Trigger: AATGGACGTGTTATGACTCCAGAATTTCCCAAAGCAGTGCATGCTGTCCCTTACGTGAGTCCTGGCATGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR-3UTR CAA 90 bp GCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAAATTGACAGCCTTGCCTaGTTCCTCGTGGCAGCGCTC +
Preference number: 3 (lower is better)
Translates to: AERKAFKISDASHHFDNKIDSLA*FLVAAL
Trigger: GAGCGCTGCCACGAGGAACAAGGCAAGGCTGTCAAT...TTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR-3UTR CAA 90 bp GGTTCCTATCAATCACGAGAGATCAGTCACACTGACATTCATTCCCATGCCAGGGCGGAAACGGGTTTGTaGTCTGTACAAAGACTTCAG +
Preference number: 3 (lower is better)
Translates to: GSYQSREISHTDIHSHARAETGL*SVQRLQ
Trigger: CTGAAGTCTTTGTACAGACAACAAACCCGTTTCCGC...CCTGGCATGGGAATGAATGTCAGTGTGACTGATCTCTCGTGATTGATAGGAACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR-3UTR CAA 90 bp GCAGACACCTGCACTCATGGGCATATTCCCACATCAGCACGCACATACATACACAGTTGTAGAAAGTGTTaGTCTCCTTGGAGTATGACA +
Preference number: 3 (lower is better)
Translates to: ADTCTHGHIPTSARTYIHSCRKC*SPWSMT
Trigger: TGTCATACTCCAAGGAGACAAACACTTTCTACAACT...GTGTATGTATGTGCGTGCTGATGTGGGAATATGCCCATGAGTGCAGGTGTCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR TCA 72 bp AGAAGGTTCCTATCAATCACGAGAGATCAGTCACACTaGCATTCATTCCCATGCCAGGACTCACGTAAGGGA +
Preference number: 3 (lower is better)
Translates to: RRFLSITRDQSH*HSFPCQDSRKG
Trigger: TCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTGACTGATCTCTCGTGATTGATAGGAACCTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR-3UTR CAA 90 bp AGTACTTCCATGTTAGCTGTGCATGTCCACCACGCTTCCTCTGACATCGAAGTAATGCCTCTCACCACTTaGACAATAAACACACAAGGA +
Preference number: 3 (lower is better)
Translates to: STSMLAVHVHHASSDIEVMPLTT*TINTQG
Trigger: TCCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCAT...TACTTCGATGTCAGAGGAAGCGTGGTGGACATGCACAGCTAACATGGAAGTACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR TCA 72 bp TCCTCCAGGAACTCTCCTGAATGTGGAGTCTTTAGGTaGAATGGGTATATAGCTAAGCAGCCATGTTGGATC +
Preference number: 3 (lower is better)
Translates to: SSRNSPECGVFR*NGYIAKQPCWI
Trigger: GATCCAACATGGCTGCTTAGCTATATACCCATTTCACCTAAAGACTCCACATTCAGGAGAGTTCCTGGAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR GCA 72 bp TGCTGGAGGATTGCTCAGTGGTTAAGAAAGAACACTTaGAGTGGACCCAGGCTAGTTTCTCCAAAAACCATT +
Preference number: 3 (lower is better)
Translates to: CWRIAQWLRKNT*SGPRLVSPKTI
Trigger: AATGGTTTTTGGAGAAACTAGCCTGGGTCCACTGCAAGTGTTCTTTCTTAACCACTGAGCAATCCTCCAGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR-3UTR CAA 90 bp CACATCTTGATGCAGTTGATGTCAAGTGTGCTTAGTCATTATGAATCAAGAGACAATACTCCAGCAACGTaGCTCAGACTGAGGGCACTG +
Preference number: 3 (lower is better)
Translates to: HILMQLMSSVLSHYESRDNTPAT*LRLRAL
Trigger: CAGTGCCCTCAGTCTGAGCAACGTTGCTGGAGTATT...GTCTCTTGATTCATAATGACTAAGCACACTTGACATCAACTGCATCAAGATGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192463.2
3UTR TCA 72 bp TTCCATGTTAGCTGTGCATGTCCACCACGCTTCCTCTaGCATCGAAGTAGAAAAGGATGCTCTGTTTGTAAT +
Preference number: 3 (lower is better)
Translates to: FHVSCACPPRFL*HRSRKGCSVCN
Trigger: ATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGAAGCGTGGTGGACATGCACAGCTAACATGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR TCA 72 bp TTCTGCCTTGACACTATTCAGACTTTGCTGACAAACTaGTGCCCTCCCTCACTAAAAACATCTAGATTTGGG +
Preference number: 3 (lower is better)
Translates to: FCLDTIQTLLTN*CPPSLKTSRFG
Trigger: CCCAAATCTAGATGTTTTTAGTGAGGGAGGGCATCAGTTTGTCAGCAAAGTCTGAATAGTGTCAAGGCAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR TCA 72 bp CGTGAGGCCAATACAGATAGCCTGCATTTACTCCACTaGAAAACGAAGGCACAGATGTGTAAGAAAAATGTG +
Preference number: 3 (lower is better)
Translates to: REANTDSLHLLH*KTKAQMCKKNV
Trigger: CACATTTTTCTTACACATCTGTGCCTTCGTTTTTCAGTGGAGTAAATGCAGGCTATCTGTATTGGCCTCACG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR CCA 72 bp GCCATGTTGGATCAGAATACGTGTGTGATGCAAACATaGAGATTAACACATGCTCTCCTCTTTCGTTTGAGA +
Preference number: 3 (lower is better)
Translates to: AMLDQNTCVMQT*RLTHALLFRLR
Trigger: TCTCAAACGAAAGAGGAGAGCATGTGTTAATCTCCATGTTTGCATCACACACGTATTCTGATCCAACATGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR-3UTR CAA 90 bp CACATCTTGATGCAGTTGATGTCAAGTGTGCTTAGTCATTATGAATCAAGAGACGCGGAAACGGGTTTGTaGTCTGTACAAAGACTTCAG +
Preference number: 3 (lower is better)
Translates to: HILMQLMSSVLSHYESRDAETGL*SVQRLQ
Trigger: CTGAAGTCTTTGTACAGACAACAAACCCGTTTCCGC...GTCTCTTGATTCATAATGACTAAGCACACTTGACATCAACTGCATCAAGATGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR-3UTR CAA 90 bp TTTGACAATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTAGCTGCGGAAACGGGTTaGTTGTCTGTACAAAGACTT +
Preference number: 3 (lower is better)
Translates to: FDNKHTRKPLCKALRRFLAAETG*LSVQRL
Trigger: AAGTCTTTGTACAGACAACAAACCCGTTTCCGCAGC...TAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATTGTCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR GCA 72 bp GAATACGTGTGTGATGCAAACATGGAGATTAACACATaGTCTCCTCTTTCGTTTGAGAGATTCCTAGTTCCT +
Preference number: 3 (lower is better)
Translates to: EYVCDANMEINT*SPLSFERFLVP
Trigger: AGGAACTAGGAATCTCTCAAACGAAAGAGGAGAGCATGTGTTAATCTCCATGTTTGCATCACACACGTATTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR-3UTR CAA 90 bp TTTGACAATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTAACAGCATGCACTGCTTaGGGAAATTCTGGAGTCATA +
Preference number: 3 (lower is better)
Translates to: FDNKHTRKPLCKALRRFLTACTA*GNSGVI
Trigger: TATGACTCCAGAATTTCCCAAAGCAGTGCATGCTGT...TAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATTGTCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR-3UTR CAA 90 bp AAGAATTCTTGGCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTAAAACAGGTCACATCTaGATGCAGTTGATGTCAAGT +
Preference number: 3 (lower is better)
Translates to: KNSWLKEKPSRYRMPLTTKTGHI*MQLMSS
Trigger: ACTTGACATCAACTGCATCAAGATGTGACCTGTTTT...AGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGCCAAGAATTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR-3UTR CAA 90 bp TTTGACAATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTACACATCTTGATGCAGTaGATGTCAAGTGTGCTTAGT +
Preference number: 3 (lower is better)
Translates to: FDNKHTRKPLCKALRRFLHILMQ*MSSVLS
Trigger: ACTAAGCACACTTGACATCAACTGCATCAAGATGTG...TAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATTGTCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR TCA 72 bp TGTAAGAAAAATGTGCAGGAAGTACTATGCCAACTATaGCCTAGAAATCCCAGGAAAATTGCTATGCCTCAC +
Preference number: 3 (lower is better)
Translates to: CKKNVQEVLCQL*PRNPRKIAMPH
Trigger: GTGAGGCATAGCAATTTTCCTGGGATTTCTAGGTCATAGTTGGCATAGTACTTCCTGCACATTTTTCTTACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR GCA 72 bp AATGTATTTGAACCTCCATGGGCTTGGAGTGTTGTGTaGTGTTCGTGGGTTGTTCTTTTTAAACATAAAGTG +
Preference number: 3 (lower is better)
Translates to: NVFEPPWAWSVV*CSWVVLFKHKV
Trigger: CACTTTATGTTTAAAAAGAACAACCCACGAACAGCACACAACACTCCAAGCCCATGGAGGTTCAAATACATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR-3UTR CAA 90 bp TATAAAACAGGTCACATCTTGATGCAGTTGATGTCAAGTGTGCTTAGTCATTATACAGCATGCACTGCTTaGGGAAATTCTGGAGTCATA +
Preference number: 3 (lower is better)
Translates to: YKTGHILMQLMSSVLSHYTACTA*GNSGVI
Trigger: TATGACTCCAGAATTTCCCAAAGCAGTGCATGCTGT...ATAATGACTAAGCACACTTGACATCAACTGCATCAAGATGTGACCTGTTTTATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR-3UTR CAA 90 bp TTAGTCATTATGAATCAAGAGACTAACAATAGTGGCTGCGGAAACGGGTTTGTTAAAACAGGTCACATCTaGATGCAGTTGATGTCAAGT +
Preference number: 3 (lower is better)
Translates to: LVIMNQETNNSGCGNGFVKTGHI*MQLMSS
Trigger: ACTTGACATCAACTGCATCAAGATGTGACCTGTTTT...AACAAACCCGTTTCCGCAGCCACTATTGTTAGTCTCTTGATTCATAATGACTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR TCA 72 bp ATACAGACAGGACACAAGACATTCACAAATTCTTCATaGTCCACATTAGCTCTGGGTACTTCTTTAGAGCTT +
Preference number: 3 (lower is better)
Translates to: IQTGHKTFTNSS*STLALGTSLEL
Trigger: AAGCTCTAAAGAAGTACCCAGAGCTAATGTGGATCATGAAGAATTTGTGAATGTCTTGTGTCCTGTCTGTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR TCA 72 bp AAGACTTTGAAAGTTTCAGTCCTGTCTTGGACGAAGTaGACTGCATTGTACGTGTTCTCAAAGCAAAATTTC +
Preference number: 3 (lower is better)
Translates to: KTLKVSVLSWTK*TALYVFSKQNF
Trigger: GAAATTTTGCTTTGAGAACACGTACAATGCAGTTCACTTCGTCCAAGACAGGACTGAAACTTTCAAAGTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR TCA 72 bp ATTCCTAGTTCCTTGCTATGGTCATTAAAAAGACTTTaGAAGTTTCAGTCCTGTCTTGGACGAAGTGAACTG +
Preference number: 3 (lower is better)
Translates to: IPSSLLWSLKRL*KFQSCLGRSEL
Trigger: CAGTTCACTTCGTCCAAGACAGGACTGAAACTTTCAAAGTCTTTTTAATGACCATAGCAAGGAACTAGGAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR GCA 72 bp TTAGTCATTATGAATCAAGAGACTAACAATAGTGGCTaGGGAAACGGGTTTGTTGTCTGTACAAAGACTTCA +
Preference number: 3 (lower is better)
Translates to: LVIMNQETNNSG*GNGFVVCTKTS
Trigger: TGAAGTCTTTGTACAGACAACAAACCCGTTTCCGCAGCCACTATTGTTAGTCTCTTGATTCATAATGACTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR GCA 72 bp TATGACTCCATGTTAGAGGCAATTTCTCATGAATGTTaGCAAGACTTTTGTCCTGAAGGAAAGTACAATGTC +
Preference number: 3 (lower is better)
Translates to: YDSMLEAISHEC*QDFCPEGKYNV
Trigger: GACATTGTACTTTCCTTCAGGACAAAAGTCTTGGCAACATTCATGAGAAATTGCCTCTAACATGGAGTCATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR CCA 72 bp TATGTTTACATAAATGTATTTGAACCTCCATGGGCTTaGAGTGTTGTGTGCTGTTCGTGGGTTGTTCTTTTT +
Preference number: 3 (lower is better)
Translates to: YVYINVFEPPWA*SVVCCSWVVLF
Trigger: AAAAAGAACAACCCACGAACAGCACACAACACTCCAAGCCCATGGAGGTTCAAATACATTTATGTAAACATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR-3UTR CAA 90 bp TCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCTTACACATCTTGATGCAGTaGATGTCAAGTGTGCTTAGT +
Preference number: 3 (lower is better)
Translates to: SSDIEVEKDALFVINLSLHILMQ*MSSVLS
Trigger: ACTAAGCACACTTGACATCAACTGCATCAAGATGTG...TAAGGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR TCA 72 bp AAGAGTACTGTTGACTTCAATATGCTACATATTGTTTaGAGAAACTTGCTAACCACTCCCACTGGGCTATTT +
Preference number: 3 (lower is better)
Translates to: KSTVDFNMLHIV*RNLLTTPTGLF
Trigger: AAATAGCCCAGTGGGAGTGGTTAGCAAGTTTCTTCAAACAATATGTAGCATATTGAAGTCAACAGTACTCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR CCA 72 bp CCACTTCCGTTGATAAATTCGAAATTGTTCTGTACTTaGTTGGGAAATTCCCTGTTGCTACTTAAATTTCAT +
Preference number: 3 (lower is better)
Translates to: PLPLINSKLFCT*LGNSLLLLKFH
Trigger: ATGAAATTTAAGTAGCAACAGGGAATTTCCCAACCAAGTACAGAACAATTTCGAATTTATCAACGGAAGTGG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
3UTR CAA 72 bp TGCTCCCTCAACTTTTGTTCAGGGTCTCAGAGCAGTTaGTGTATACTTACCCATCCTCCGTGCCGGCGAGGT +
Preference number: 4 (lower is better)
Translates to: CSLNFCSGSQSS*CILTHPPCRRG
Trigger: ACCTCGCCGGCACGGAGGATGGGTAAGTATACACAAACTGCTCTGAGACCCTGAACAAAAGTTGAGGGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
CDS-3UTR CCA 90 bp CACACTGACATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGCACTGCAGGTCAGGTCGCATCTaGATGACAAATGGATGCGTG +
Preference number: 4 (lower is better)
Translates to: HTDIHSHARTHVRDSMHCRSGRI*MTNGCV
Trigger: CACGCATCCATTTGTCATCCAGATGCGACCTGACCT...GCAGTGCATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp TTCTGCTTCTTCAGAGAACCTCCTGCATCCTCCAGGAACTCTCCTGAATGTGGACACTGGTCTTTTCCTTaGAATCACCTCCCCCGCTGC +
Preference number: 4 (lower is better)
Translates to: FCFFREPPASSRNSPECGHWSFP*NHLPRC
Trigger: GCAGCGGGGGAGGTGATTCCAAGGAAAAGACCAGTG...TCCACATTCAGGAGAGTTCCTGGAGGATGCAGGAGGTTCTCTGAAGAAGCAGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
CDS-3UTR TCA 90 bp AGTCACACTGACATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGCACTCCCTTTGGATTTCCTaGCTCTGGCTACTCCTTCTG +
Preference number: 4 (lower is better)
Translates to: SHTDIHSHARTHVRDSMHSLWIS*LWLLLL
Trigger: CAGAAGGAGTAGCCAGAGTCAGGAAATCCAAAGGGA...GTGCATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp CACACTGACATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGCACTGCACGCCTCTTGAAAACTaGGAGCAGAAAGCATTGGTG +
Preference number: 4 (lower is better)
Translates to: HTDIHSHARTHVRDSMHCTPLEN*EQKALV
Trigger: CACCAATGCTTTCTGCTCCCAGTTTTCAAGAGGCGT...GCAGTGCATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp CACACTGACATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGCACTGCCATCTGGATGACAAATaGATGCGTGCCATCTGTTGG +
Preference number: 4 (lower is better)
Translates to: HTDIHSHARTHVRDSMHCHLDDK*MRAICW
Trigger: CCAACAGATGGCACGCATCCATTTGTCATCCAGATG...GCAGTGCATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp GGTTCCTATCAATCACGAGAGATCAGTCACACTGACATTCATTCCCATGCCAGGCGCATAGACGCCTCTTaGAAACTGGGAGCAGAAAGC +
Preference number: 4 (lower is better)
Translates to: GSYQSREISHTDIHSHARRIDAS*KLGAES
Trigger: GCTTTCTGCTCCCAGTTTTCAAGAGGCGTCTATGCG...CCTGGCATGGGAATGAATGTCAGTGTGACTGATCTCTCGTGATTGATAGGAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp AGTACTTCCATGTTAGCTGTGCATGTCCACCACGCTTCCTCTGACATCGAAGTACGCATAGACGCCTCTTaGAAACTGGGAGCAGAAAGC +
Preference number: 4 (lower is better)
Translates to: STSMLAVHVHHASSDIEVRIDAS*KLGAES
Trigger: GCTTTCTGCTCCCAGTTTTCAAGAGGCGTCTATGCG...TACTTCGATGTCAGAGGAAGCGTGGTGGACATGCACAGCTAACATGGAAGTACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp CACACTGACATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGCACTGCTCTGCTTCCGAAGATTaGGGAATGCTTCAGTCATCA +
Preference number: 4 (lower is better)
Translates to: HTDIHSHARTHVRDSMHCSASED*GMLQSS
Trigger: TGATGACTGAAGCATTCCGCAATCTTCGGAAGCAGA...GCAGTGCATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp CACACTGACATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGCACTGCAAACACAGAGGGCTCTaGACTCCTCATATAAGTCCA +
Preference number: 4 (lower is better)
Translates to: HTDIHSHARTHVRDSMHCKHRGL*TPHISP
Trigger: TGGACTTATATGAGGAGTGCAGAGCCCTCTGTGTTT...GCAGTGCATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp ACCCAGGCTAGTTTCTCCAAAAACCATTTTAGGAGCTGGCAAGCATCTATAACCCAAAGCCACCAGCATTaGCAAACCAAGGCCCCCGAC +
Preference number: 4 (lower is better)
Translates to: TQASFSKNHFRSWQASITQSHQH*QTKAPD
Trigger: GTCGGGGGCCTTGGTTTGGCAATGCTGGTGGCTTTG...GGTTATAGATGCTTGCCAGCTCCTAAAATGGTTTTTGGAGAAACTAGCCTGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
CDS-3UTR CCA 90 bp TATGGAACTGATACCATGGACCATTTTCCCCATCACTTCCCACACAGTTTGACTCGATGCCGTAGCCTTTaGAATCCAGGTTGCCGCCCA +
Preference number: 4 (lower is better)
Translates to: YGTDTMDHFPHHFPHSLTRCRSL*NPGCRP
Trigger: TGGGCGGCAACCTGGATTCCAAAGGCTACGGCATCG...AGTCAAACTGTGTGGGAAGTGATGGGGAAAATGGTCCATGGTATCAGTTCCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
CDS-3UTR TCA 90 bp TTCTGCTTCTTCAGAGAACCTCCTGCATCCTCCAGGAACTCTCCTGAATGTGGACAACTTGAACCTGCTTaGGGGCCCTTTCTATTTCCA +
Preference number: 4 (lower is better)
Translates to: FCFFREPPASSRNSPECGQLEPA*GPFLFP
Trigger: TGGAAATAGAAAGGGCCCTCAAGCAGGTTCAAGTTG...TCCACATTCAGGAGAGTTCCTGGAGGATGCAGGAGGTTCTCTGAAGAAGCAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
CDS-3UTR TCA 90 bp AGTCACACTGACATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGCACAGATTCCAAGGCTCATaGATGGCTTCGAGAAGTCAA +
Preference number: 4 (lower is better)
Translates to: SHTDIHSHARTHVRDSMHRFQGS*MASRSQ
Trigger: TTGACTTCTCGAAGCCATTCATGAGCCTTGGAATCT...GTGCATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp AGTACTTCCATGTTAGCTGTGCATGTCCACCACGCTTCCTCTGACATCGAAGTATTGATAGCAGTCACCTaGCACTTCTTCTCCGCAGCA +
Preference number: 4 (lower is better)
Translates to: STSMLAVHVHHASSDIEVLIAVT*HFFSAA
Trigger: TGCTGCGGAGAAGAAGTGGCAGGTGACTGCTATCAA...TACTTCGATGTCAGAGGAAGCGTGGTGGACATGCACAGCTAACATGGAAGTACT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp ATCAGTCACACTGACATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGCCGAAGATTGCGGAATaGTTCAGTCATCACTTGGAC +
Preference number: 4 (lower is better)
Translates to: ISHTDIHSHARTHVRDSMPKIAE*FSHHLD
Trigger: GTCCAAGTGATGACTGAAGCATTCCGCAATCTTCGG...CATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTGACTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp AGTCACACTGACATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGCACTCGCAAGGCTTCCTCTaGTCGATGTACTCATTCATT +
Preference number: 4 (lower is better)
Translates to: SHTDIHSHARTHVRDSMHSQGFL*SMYSFI
Trigger: AATGAATGAGTACATCGAGCAGAGGAAGCCTTGCGA...GTGCATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp AGTCACACTGACATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGCACTCCAAATTGTCGATATaGGGTGTCAGTCTGAACTCC +
Preference number: 4 (lower is better)
Translates to: SHTDIHSHARTHVRDSMHSKLSI*GVSLNS
Trigger: GGAGTTCAGACTGACACCCCATATCGACAATTTGGA...GTGCATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp CCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAACACACAAGGAAACCGATGCCGTAGCCTTTaGAATCCAGGTTGCCGCCCA +
Preference number: 4 (lower is better)
Translates to: PSRYRMPLTTLTINTQGNRCRSL*NPGCRP
Trigger: TGGGCGGCAACCTGGATTCCAAAGGCTACGGCATCG...GTTTCCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp GGTTCCTATCAATCACGAGAGATCAGTCACACTGACATTCATTCCCATGCCAGGAATCAAGCTAAGGAGTaGTCCTTTGAGGTCAGGTCG +
Preference number: 4 (lower is better)
Translates to: GSYQSREISHTDIHSHARNQAKE*SFEVRS
Trigger: CGACCTGACCTCAAAGGAGCACTCCTTAGCTTGATT...CCTGGCATGGGAATGAATGTCAGTGTGACTGATCTCTCGTGATTGATAGGAACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp AGTACTTCCATGTTAGCTGTGCATGTCCACCACGCTTCCTCTGACATCGAAGTAGAATCCAGCACAGCTTaGAGTGTTGATAAGCCTCTG +
Preference number: 4 (lower is better)
Translates to: STSMLAVHVHHASSDIEVESSTA*SVDKPL
Trigger: CAGAGGCTTATCAACACTGCAAGCTGTGCTGGATTC...TACTTCGATGTCAGAGGAAGCGTGGTGGACATGCACAGCTAACATGGAAGTACT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp CGTCCATTTTCTCCAGTACTTCCTGTAATTGACAGCCTTGCCTTGTTCCTCGTGGAATCCAGCACAGCTTaGAGTGTTGATAAGCCTCTG +
Preference number: 4 (lower is better)
Translates to: RPFSPVLPVIDSLALFLVESSTA*SVDKPL
Trigger: CAGAGGCTTATCAACACTGCAAGCTGTGCTGGATTC...CACGAGGAACAAGGCAAGGCTGTCAATTACAGGAAGTACTGGAGAAAATGGACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp GGTTCCTATCAATCACGAGAGATCAGTCACACTGACATTCATTCCCATGCCAGGCCGAAGATTGCGGAATaGTTCAGTCATCACTTGGAC +
Preference number: 4 (lower is better)
Translates to: GSYQSREISHTDIHSHARPKIAE*FSHHLD
Trigger: GTCCAAGTGATGACTGAAGCATTCCGCAATCTTCGG...CCTGGCATGGGAATGAATGTCAGTGTGACTGATCTCTCGTGATTGATAGGAACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp AGTCACACTGACATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGCACTGTAGGCAAACACAATaGACATCCAGATCTCATAGG +
Preference number: 4 (lower is better)
Translates to: SHTDIHSHARTHVRDSMHCRQTQ*TSRSHR
Trigger: CCTATGAGATCTGGATGTGCATTGTGTTTGCCTACA...GTGCATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp TGTCAAGTGTGCTTAGTCATTATGAATCAAGAGACTAACAATAGTGGCTGCGGACAAAGCCACCAGCATTaGCAAACCAAGGCCCCCGAC +
Preference number: 4 (lower is better)
Translates to: CQVCLVIMNQETNNSGCGQSHQH*QTKAPD
Trigger: GTCGGGGGCCTTGGTTTGGCAATGCTGGTGGCTTTG...TCCGCAGCCACTATTGTTAGTCTCTTGATTCATAATGACTAAGCACACTTGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
CDS-3UTR CCA 90 bp CGTCCATTTTCTCCAGTACTTCCTGTAATTGACAGCCTTGCCTTGTTCCTCGTGACGCCTCTTGAAAACTaGGAGCAGAAAGCATTGGTG +
Preference number: 4 (lower is better)
Translates to: RPFSPVLPVIDSLALFLVTPLEN*EQKALV
Trigger: CACCAATGCTTTCTGCTCCCAGTTTTCAAGAGGCGT...CACGAGGAACAAGGCAAGGCTGTCAATTACAGGAAGTACTGGAGAAAATGGACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp GCAGACACCTGCACTCATGGGCATATTCCCACATCAGCACGCACATACATACACATCTGTTGGGAAGCTTaGTGTGATGAAGGATACATG +
Preference number: 4 (lower is better)
Translates to: ADTCTHGHIPTSARTYIHICWEA*CDEGYM
Trigger: CATGTATCCTTCATCACACCAAGCTTCCCAACAGAT...GTGTATGTATGTGCGTGCTGATGTGGGAATATGCCCATGAGTGCAGGTGTCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
CDS-3UTR GCA 90 bp GGTTCCTATCAATCACGAGAGATCAGTCACACTGACATTCATTCCCATGCCAGGCATCCCTACCCGAAATaGACTGTATTCTTGATCAGC +
Preference number: 4 (lower is better)
Translates to: GSYQSREISHTDIHSHARHPYPK*TVFLIS
Trigger: GCTGATCAAGAATACAGTGCATTTCGGGTAGGGATG...CCTGGCATGGGAATGAATGTCAGTGTGACTGATCTCTCGTGATTGATAGGAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp CGTCCATTTTCTCCAGTACTTCCTGTAATTGACAGCCTTGCCTTGTTCCTCGTGCATCCCTACCCGAAATaGACTGTATTCTTGATCAGC +
Preference number: 4 (lower is better)
Translates to: RPFSPVLPVIDSLALFLVHPYPK*TVFLIS
Trigger: GCTGATCAAGAATACAGTGCATTTCGGGTAGGGATG...CACGAGGAACAAGGCAAGGCTGTCAATTACAGGAAGTACTGGAGAAAATGGACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp GGTTCCTATCAATCACGAGAGATCAGTCACACTGACATTCATTCCCATGCCAGGAATTGTCGCTGTGTGTaGTCCAGGGTATTCTTTCTC +
Preference number: 4 (lower is better)
Translates to: GSYQSREISHTDIHSHARNCRCV*SRVFFL
Trigger: GAGAAAGAATACCCTGGAGCACACACAGCGACAATT...CCTGGCATGGGAATGAATGTCAGTGTGACTGATCTCTCGTGATTGATAGGAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp AGTACTTCCATGTTAGCTGTGCATGTCCACCACGCTTCCTCTGACATCGAAGTAAATTGTCGCTGTGTGTaGTCCAGGGTATTCTTTCTC +
Preference number: 4 (lower is better)
Translates to: STSMLAVHVHHASSDIEVNCRCV*SRVFFL
Trigger: GAGAAAGAATACCCTGGAGCACACACAGCGACAATT...TACTTCGATGTCAGAGGAAGCGTGGTGGACATGCACAGCTAACATGGAAGTACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp TTCTGCTTCTTCAGAGAACCTCCTGCATCCTCCAGGAACTCTCCTGAATGTGGATGTAGGCAAACACAATaGACATCCAGATCTCATAGG +
Preference number: 4 (lower is better)
Translates to: FCFFREPPASSRNSPECGCRQTQ*TSRSHR
Trigger: CCTATGAGATCTGGATGTGCATTGTGTTTGCCTACA...TCCACATTCAGGAGAGTTCCTGGAGGATGCAGGAGGTTCTCTGAAGAAGCAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
CDS-3UTR CCA 90 bp AGTACTTCCATGTTAGCTGTGCATGTCCACCACGCTTCCTCTGACATCGAAGTATCCAAATTGTCGATATaGGGTGTCAGTCTGAACTCC +
Preference number: 4 (lower is better)
Translates to: STSMLAVHVHHASSDIEVSKLSI*GVSLNS
Trigger: GGAGTTCAGACTGACACCCCATATCGACAATTTGGA...TACTTCGATGTCAGAGGAAGCGTGGTGGACATGCACAGCTAACATGGAAGTACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp TATGGAACTGATACCATGGACCATTTTCCCCATCACTTCCCACACAGTTTGACTAAGGCACAGCTGGGTTaGCCAAACAATCTCCTGCAT +
Preference number: 4 (lower is better)
Translates to: YGTDTMDHFPHHFPHSLTKAQLG*PNNLLH
Trigger: ATGCAGGAGATTGTTTGGCCAACCCAGCTGTGCCTT...AGTCAAACTGTGTGGGAAGTGATGGGGAAAATGGTCCATGGTATCAGTTCCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
CDS-3UTR CCA 90 bp GCTTCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCCGATGCCGTAGCCTTTaGAATCCAGGTTGCCGCCCA +
Preference number: 4 (lower is better)
Translates to: ASSDIEVEKDALFVINLSRCRSL*NPGCRP
Trigger: TGGGCGGCAACCTGGATTCCAAAGGCTACGGCATCG...GGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR CAA 72 bp GTGCTGGAGGATTGCTCAGTGGTTAAGAAAGAACACTaGCAGTGGACCCAGGCTAGTTTCTCCAAAAACCAT +
Preference number: 4 (lower is better)
Translates to: VLEDCSVVKKEH*QWTQASFSKNH
Trigger: ATGGTTTTTGGAGAAACTAGCCTGGGTCCACTGCAAGTGTTCTTTCTTAACCACTGAGCAATCCTCCAGCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
CDS-3UTR GCA 90 bp GGTTCCTATCAATCACGAGAGATCAGTCACACTGACATTCATTCCCATGCCAGGGTGATGAAGGATACATaGAGTGTCCCACAGAATGAT +
Preference number: 4 (lower is better)
Translates to: GSYQSREISHTDIHSHARVMKDT*SVPQND
Trigger: ATCATTCTGTGGGACACTGCATGTATCCTTCATCAC...CCTGGCATGGGAATGAATGTCAGTGTGACTGATCTCTCGTGATTGATAGGAACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp GTTAAGAATTCTTGGCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCTTGATAGCAGTCACCTaGCACTTCTTCTCCGCAGCA +
Preference number: 4 (lower is better)
Translates to: VKNSWLKEKPSRYRMPLTLIAVT*HFFSAA
Trigger: TGCTGCGGAGAAGAAGTGGCAGGTGACTGCTATCAA...GGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGCCAAGAATTCTTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp AAGAATTCTTGGCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTTTGATAGCAGTCACCTaGCACTTCTTCTCCGCAGCA +
Preference number: 4 (lower is better)
Translates to: KNSWLKEKPSRYRMPLTTLIAVT*HFFSAA
Trigger: TGCTGCGGAGAAGAAGTGGCAGGTGACTGCTATCAA...AGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGCCAAGAATTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp GCAGACACCTGCACTCATGGGCATATTCCCACATCAGCACGCACATACATACACTGGTACCCTTTAACATaGTTTCCAATGGTAATAACC +
Preference number: 4 (lower is better)
Translates to: ADTCTHGHIPTSARTYIHWYPLT*FPMVIT
Trigger: GGTTATTACCATTGGAAAGCATGTTAAAGGGTACCA...GTGTATGTATGTGCGTGCTGATGTGGGAATATGCCCATGAGTGCAGGTGTCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
CDS-3UTR CCA 90 bp TATGGAACTGATACCATGGACCATTTTCCCCATCACTTCCCACACAGTTTGACTCATCTGGATGACAAATaGATGCGTGCCATCTGTTGG +
Preference number: 4 (lower is better)
Translates to: YGTDTMDHFPHHFPHSLTHLDDK*MRAICW
Trigger: CCAACAGATGGCACGCATCCATTTGTCATCCAGATG...AGTCAAACTGTGTGGGAAGTGATGGGGAAAATGGTCCATGGTATCAGTTCCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
CDS-3UTR CCA 90 bp AAGAATTCTTGGCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTAGGTCAGGTCGCATCTaGATGACAAATGGATGCGTG +
Preference number: 4 (lower is better)
Translates to: KNSWLKEKPSRYRMPLTTRSGRI*MTNGCV
Trigger: CACGCATCCATTTGTCATCCAGATGCGACCTGACCT...AGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGCCAAGAATTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp CCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAACACACAAGGAAACAAGGCACAGCTGGGTTaGCCAAACAATCTCCTGCAT +
Preference number: 4 (lower is better)
Translates to: PSRYRMPLTTLTINTQGNKAQLG*PNNLLH
Trigger: ATGCAGGAGATTGTTTGGCCAACCCAGCTGTGCCTT...GTTTCCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp GTTAAGAATTCTTGGCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCTCCGAAGTGGAAAACTaGACCATCCCTACCCGAAAT +
Preference number: 4 (lower is better)
Translates to: VKNSWLKEKPSRYRMPLTSEVEN*TIPTRN
Trigger: ATTTCGGGTAGGGATGGTTCAGTTTTCCACTTCGGA...GGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGCCAAGAATTCTTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp GGTTCCTATCAATCACGAGAGATCAGTCACACTGACATTCATTCCCATGCCAGGTCCCACAGAATGATGTaGTGGTATTTACAGACTTCT +
Preference number: 4 (lower is better)
Translates to: GSYQSREISHTDIHSHARSHRMM*WYLQTS
Trigger: AGAAGTCTGTAAATACCATCACATCATTCTGTGGGA...CCTGGCATGGGAATGAATGTCAGTGTGACTGATCTCTCGTGATTGATAGGAACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp CGTCCATTTTCTCCAGTACTTCCTGTAATTGACAGCCTTGCCTTGTTCCTCGTGCAGATCTTGAAAGAGTaGTCTGTAGGTCTCATCTTT +
Preference number: 4 (lower is better)
Translates to: RPFSPVLPVIDSLALFLVQILKE*SVGLIF
Trigger: AAAGATGAGACCTACAGATCACTCTTTCAAGATCTG...CACGAGGAACAAGGCAAGGCTGTCAATTACAGGAAGTACTGGAGAAAATGGACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp TATGGAACTGATACCATGGACCATTTTCCCCATCACTTCCCACACAGTTTGACTGGTCCACAATGTCATTaGCTTTATCCCTTTCGCAGT +
Preference number: 4 (lower is better)
Translates to: YGTDTMDHFPHHFPHSLTGPQCH*LYPFRS
Trigger: ACTGCGAAAGGGATAAAGTCAATGACATTGTGGACC...AGTCAAACTGTGTGGGAAGTGATGGGGAAAATGGTCCATGGTATCAGTTCCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
CDS-3UTR TCA 90 bp TATGGAACTGATACCATGGACCATTTTCCCCATCACTTCCCACACAGTTTGACTAGATTCCAAGGCTCATaGATGGCTTCGAGAAGTCAA +
Preference number: 4 (lower is better)
Translates to: YGTDTMDHFPHHFPHSLTRFQGS*MASRSQ
Trigger: TTGACTTCTCGAAGCCATTCATGAGCCTTGGAATCT...AGTCAAACTGTGTGGGAAGTGATGGGGAAAATGGTCCATGGTATCAGTTCCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
CDS-3UTR TCA 90 bp GCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAATCCCTTTGGATTTCCTaGCTCTGGCTACTCCTTCTG +
Preference number: 4 (lower is better)
Translates to: AERKAFKISDASHHFDNKSLWIS*LWLLLL
Trigger: CAGAAGGAGTAGCCAGAGTCAGGAAATCCAAAGGGA...TTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp CACATCTTGATGCAGTTGATGTCAAGTGTGCTTAGTCATTATGAATCAAGAGACCAACGTTGCTCAGACTaGGGGCACTGGTCTTTTCCT +
Preference number: 4 (lower is better)
Translates to: HILMQLMSSVLSHYESRDQRCSD*GHWSFP
Trigger: AGGAAAAGACCAGTGCCCTCAGTCTGAGCAACGTTG...GTCTCTTGATTCATAATGACTAAGCACACTTGACATCAACTGCATCAAGATGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
CDS-3UTR TCA 90 bp TTTGACAATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTACAACGTTGCTCAGACTaGGGGCACTGGTCTTTTCCT +
Preference number: 4 (lower is better)
Translates to: FDNKHTRKPLCKALRRFLQRCSD*GHWSFP
Trigger: AGGAAAAGACCAGTGCCCTCAGTCTGAGCAACGTTG...TAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATTGTCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
CDS-3UTR GCA 90 bp AAGAATTCTTGGCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTGAATCCAGCACAGCTTaGAGTGTTGATAAGCCTCTG +
Preference number: 4 (lower is better)
Translates to: KNSWLKEKPSRYRMPLTTESSTA*SVDKPL
Trigger: CAGAGGCTTATCAACACTGCAAGCTGTGCTGGATTC...AGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGCCAAGAATTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp GTTAAGAATTCTTGGCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCCCAAATTTTGGTGTCTaGATCCCTGGCCCCATACTT +
Preference number: 4 (lower is better)
Translates to: VKNSWLKEKPSRYRMPLTPNFGV*IPGPIL
Trigger: AAGTATGGGGCCAGGGATGCAGACACCAAAATTTGG...GGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGCCAAGAATTCTTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp CACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATCAATCACGAGAAAACACAGAGGGCTCTaGACTCCTCATATAAGTCCA +
Preference number: 4 (lower is better)
Translates to: HTRKPLCKALRRFLSITRKHRGL*TPHISP
Trigger: TGGACTTATATGAGGAGTGCAGAGCCCTCTGTGTTT...TCTCGTGATTGATAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp TGTCAAGTGTGCTTAGTCATTATGAATCAAGAGACTAACAATAGTGGCTGCGGATCTGGCTACTCCTTCTaGCGTAGTCCTCACAAACAC +
Preference number: 4 (lower is better)
Translates to: CQVCLVIMNQETNNSGCGSGYSF*RSPHKH
Trigger: GTGTTTGTGAGGACTACGGCAGAAGGAGTAGCCAGA...TCCGCAGCCACTATTGTTAGTCTCTTGATTCATAATGACTAAGCACACTTGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp CACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATCAATCACGAGATCGCAAGGCTTCCTCTaGTCGATGTACTCATTCATT +
Preference number: 4 (lower is better)
Translates to: HTRKPLCKALRRFLSITRSQGFL*SMYSFI
Trigger: AATGAATGAGTACATCGAGCAGAGGAAGCCTTGCGA...TCTCGTGATTGATAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp CCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAACACACAAGGAAACATGCGTGCCATCTGTTaGGAAGCTTGGTGTGATGAA +
Preference number: 4 (lower is better)
Translates to: PSRYRMPLTTLTINTQGNMRAIC*EAWCDE
Trigger: TTCATCACACCAAGCTTCCCAACAGATGGCACGCAT...GTTTCCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp AAGAATTCTTGGCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTCATCTGGATGACAAATaGATGCGTGCCATCTGTTGG +
Preference number: 4 (lower is better)
Translates to: KNSWLKEKPSRYRMPLTTHLDDK*MRAICW
Trigger: CCAACAGATGGCACGCATCCATTTGTCATCCAGATG...AGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGCCAAGAATTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp CCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAACACACAAGGAAACCCCAGAGAGAGATCTTaGCGAAATATCGCATCCTTG +
Preference number: 4 (lower is better)
Translates to: PSRYRMPLTTLTINTQGNPRERS*RNIASL
Trigger: CAAGGATGCGATATTTCGCCAAGATCTCTCTCTGGG...GTTTCCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp GCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAATCCGAAGTGGAAAACTaGACCATCCCTACCCGAAAT +
Preference number: 4 (lower is better)
Translates to: AERKAFKISDASHHFDNKSEVEN*TIPTRN
Trigger: ATTTCGGGTAGGGATGGTTCAGTTTTCCACTTCGGA...TTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp CCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAACACACAAGGAAACGGTCCACAATGTCATTaGCTTTATCCCTTTCGCAGT +
Preference number: 4 (lower is better)
Translates to: PSRYRMPLTTLTINTQGNGPQCH*LYPFRS
Trigger: ACTGCGAAAGGGATAAAGTCAATGACATTGTGGACC...GTTTCCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp GTTAAGAATTCTTGGCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCGGTCCACAATGTCATTaGCTTTATCCCTTTCGCAGT +
Preference number: 4 (lower is better)
Translates to: VKNSWLKEKPSRYRMPLTGPQCH*LYPFRS
Trigger: ACTGCGAAAGGGATAAAGTCAATGACATTGTGGACC...GGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGCCAAGAATTCTTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp TGTCAAGTGTGCTTAGTCATTATGAATCAAGAGACTAACAATAGTGGCTGCGGACAACTTGAACCTGCTTaGGGGCCCTTTCTATTTCCA +
Preference number: 4 (lower is better)
Translates to: CQVCLVIMNQETNNSGCGQLEPA*GPFLFP
Trigger: TGGAAATAGAAAGGGCCCTCAAGCAGGTTCAAGTTG...TCCGCAGCCACTATTGTTAGTCTCTTGATTCATAATGACTAAGCACACTTGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp TTTGACAATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATCCCTTTGGATTTCCTaGCTCTGGCTACTCCTTCTG +
Preference number: 4 (lower is better)
Translates to: FDNKHTRKPLCKALRRFLSLWIS*LWLLLL
Trigger: CAGAAGGAGTAGCCAGAGTCAGGAAATCCAAAGGGA...TAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATTGTCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp GTTAAGAATTCTTGGCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCTCTGCTTCCGAAGATTaGGGAATGCTTCAGTCATCA +
Preference number: 4 (lower is better)
Translates to: VKNSWLKEKPSRYRMPLTSASED*GMLQSS
Trigger: TGATGACTGAAGCATTCCGCAATCTTCGGAAGCAGA...GGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGCCAAGAATTCTTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp GCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAAGGCCAAACAATCTCCTaGATTTCCTCTCCTGGAGAT +
Preference number: 4 (lower is better)
Translates to: AERKAFKISDASHHFDNKGQTIS*ISSPGD
Trigger: ATCTCCAGGAGAGGAAATGCAGGAGATTGTTTGGCC...TTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp GCTTCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCTCTGGCTACTCCTTCTaGCGTAGTCCTCACAAACAC +
Preference number: 4 (lower is better)
Translates to: ASSDIEVEKDALFVINLSSGYSF*RSPHKH
Trigger: GTGTTTGTGAGGACTACGGCAGAAGGAGTAGCCAGA...GGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp AATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATCAATCTCTGGCTACTCCTTCTaGCGTAGTCCTCACAAACAC +
Preference number: 4 (lower is better)
Translates to: NKHTRKPLCKALRRFLSISGYSF*RSPHKH
Trigger: GTGTTTGTGAGGACTACGGCAGAAGGAGTAGCCAGA...GATTGATAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp AATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATCAATCAGGTCAGGTCGCATCTaGATGACAAATGGATGCGTG +
Preference number: 4 (lower is better)
Translates to: NKHTRKPLCKALRRFLSIRSGRI*MTNGCV
Trigger: CACGCATCCATTTGTCATCCAGATGCGACCTGACCT...GATTGATAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp TTTGACAATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATCCGAAGTGGAAAACTaGACCATCCCTACCCGAAAT +
Preference number: 4 (lower is better)
Translates to: FDNKHTRKPLCKALRRFLSEVEN*TIPTRN
Trigger: ATTTCGGGTAGGGATGGTTCAGTTTTCCACTTCGGA...TAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATTGTCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp CACATCTTGATGCAGTTGATGTCAAGTGTGCTTAGTCATTATGAATCAAGAGACTATGGGGTGTCAGTCTaGACTCCGAAGTGGAAAACT +
Preference number: 4 (lower is better)
Translates to: HILMQLMSSVLSHYESRDYGVSV*TPKWKT
Trigger: AGTTTTCCACTTCGGAGTTCAGACTGACACCCCATA...GTCTCTTGATTCATAATGACTAAGCACACTTGACATCAACTGCATCAAGATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp GCTTCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCTATGGGGTGTCAGTCTaGACTCCGAAGTGGAAAACT +
Preference number: 4 (lower is better)
Translates to: ASSDIEVEKDALFVINLSYGVSV*TPKWKT
Trigger: AGTTTTCCACTTCGGAGTTCAGACTGACACCCCATA...GGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp TATAAAACAGGTCACATCTTGATGCAGTTGATGTCAAGTGTGCTTAGTCATTATCGCATAGACGCCTCTTaGAAACTGGGAGCAGAAAGC +
Preference number: 4 (lower is better)
Translates to: YKTGHILMQLMSSVLSHYRIDAS*KLGAES
Trigger: GCTTTCTGCTCCCAGTTTTCAAGAGGCGTCTATGCG...ATAATGACTAAGCACACTTGACATCAACTGCATCAAGATGTGACCTGTTTTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp GCTTCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCCAACTTGAACCTGCTTaGGGGCCCTTTCTATTTCCA +
Preference number: 4 (lower is better)
Translates to: ASSDIEVEKDALFVINLSQLEPA*GPFLFP
Trigger: TGGAAATAGAAAGGGCCCTCAAGCAGGTTCAAGTTG...GGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp TGTCAAGTGTGCTTAGTCATTATGAATCAAGAGACTAACAATAGTGGCTGCGGAAGATTCCAAGGCTCATaGATGGCTTCGAGAAGTCAA +
Preference number: 4 (lower is better)
Translates to: CQVCLVIMNQETNNSGCGRFQGS*MASRSQ
Trigger: TTGACTTCTCGAAGCCATTCATGAGCCTTGGAATCT...TCCGCAGCCACTATTGTTAGTCTCTTGATTCATAATGACTAAGCACACTTGACA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp TTTGACAATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATGGATGACAAATGGATaGGTGCCATCTGTTGGGAAG +
Preference number: 4 (lower is better)
Translates to: FDNKHTRKPLCKALRRFLWMTNG*VPSVGK
Trigger: CTTCCCAACAGATGGCACGCATCCATTTGTCATCCA...TAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATTGTCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp TTAGTCATTATGAATCAAGAGACTAACAATAGTGGCTGCGGAAACGGGTTTGTTAATCAAGCTAAGGAGTaGTCCTTTGAGGTCAGGTCG +
Preference number: 4 (lower is better)
Translates to: LVIMNQETNNSGCGNGFVNQAKE*SFEVRS
Trigger: CGACCTGACCTCAAAGGAGCACTCCTTAGCTTGATT...AACAAACCCGTTTCCGCAGCCACTATTGTTAGTCTCTTGATTCATAATGACTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp AATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATCAATCCCGAAGATTGCGGAATaGTTCAGTCATCACTTGGAC +
Preference number: 4 (lower is better)
Translates to: NKHTRKPLCKALRRFLSIPKIAE*FSHHLD
Trigger: GTCCAAGTGATGACTGAAGCATTCCGCAATCTTCGG...GATTGATAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp TGTCAAGTGTGCTTAGTCATTATGAATCAAGAGACTAACAATAGTGGCTGCGGATCTGCTTCCGAAGATTaGGGAATGCTTCAGTCATCA +
Preference number: 4 (lower is better)
Translates to: CQVCLVIMNQETNNSGCGSASED*GMLQSS
Trigger: TGATGACTGAAGCATTCCGCAATCTTCGGAAGCAGA...TCCGCAGCCACTATTGTTAGTCTCTTGATTCATAATGACTAAGCACACTTGACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp GCTTCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCGGCCAAACAATCTCCTaGATTTCCTCTCCTGGAGAT +
Preference number: 4 (lower is better)
Translates to: ASSDIEVEKDALFVINLSGQTIS*ISSPGD
Trigger: ATCTCCAGGAGAGGAAATGCAGGAGATTGTTTGGCC...GGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp AATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATCAATCCCAAATTTTGGTGTCTaGATCCCTGGCCCCATACTT +
Preference number: 4 (lower is better)
Translates to: NKHTRKPLCKALRRFLSIPNFGV*IPGPIL
Trigger: AAGTATGGGGCCAGGGATGCAGACACCAAAATTTGG...GATTGATAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp TTTGACAATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTACCAAATTTTGGTGTCTaGATCCCTGGCCCCATACTT +
Preference number: 4 (lower is better)
Translates to: FDNKHTRKPLCKALRRFLPNFGV*IPGPIL
Trigger: AAGTATGGGGCCAGGGATGCAGACACCAAAATTTGG...TAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATTGTCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp AAAGCCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAACACACAAGGTGTAGGCAAACACAATaGACATCCAGATCTCATAGG +
Preference number: 4 (lower is better)
Translates to: KAFKISDASHHFDNKHTRCRQTQ*TSRSHR
Trigger: CCTATGAGATCTGGATGTGCATTGTGTTTGCCTACA...CCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGGCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp GTTAAGAATTCTTGGCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCATCTGTTGGGAAGCTTaGTGTGATGAAGGATACATG +
Preference number: 4 (lower is better)
Translates to: VKNSWLKEKPSRYRMPLTICWEA*CDEGYM
Trigger: CATGTATCCTTCATCACACCAAGCTTCCCAACAGAT...GGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGCCAAGAATTCTTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp GCTTCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCATGCGTGCCATCTGTTaGGAAGCTTGGTGTGATGAA +
Preference number: 4 (lower is better)
Translates to: ASSDIEVEKDALFVINLSMRAIC*EAWCDE
Trigger: TTCATCACACCAAGCTTCCCAACAGATGGCACGCAT...GGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR CAA 72 bp CAATATTTCCCAAACCATCTAGTGCTCCCTCAACTTTaGTTCAGGGTCTCAGAGCAGTTTGTGTATACTTAC +
Preference number: 4 (lower is better)
Translates to: QYFPNHLVLPQL*FRVSEQFVYTY
Trigger: GTAAGTATACACAAACTGCTCTGAGACCCTGAACAAAAGTTGAGGGAGCACTAGATGGTTTGGGAAATATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
CDS-3UTR TCA 90 bp GCTTCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCAATGCACTGTATTCTTaGTCAGCGCCCCTTGGAAAT +
Preference number: 4 (lower is better)
Translates to: ASSDIEVEKDALFVINLSNALYS*SAPLGN
Trigger: ATTTCCAAGGGGCGCTGATCAAGAATACAGTGCATT...GGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGAAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp TTTGACAATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTAAATGCACTGTATTCTTaGTCAGCGCCCCTTGGAAAT +
Preference number: 4 (lower is better)
Translates to: FDNKHTRKPLCKALRRFLNALYS*SAPLGN
Trigger: ATTTCCAAGGGGCGCTGATCAAGAATACAGTGCATT...TAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATTGTCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp AAAGCCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAACACACAAGGTCCCACAGAATGATGTaGTGGTATTTACAGACTTCT +
Preference number: 4 (lower is better)
Translates to: KAFKISDASHHFDNKHTRSHRMM*WYLQTS
Trigger: AGAAGTCTGTAAATACCATCACATCATTCTGTGGGA...CCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGGCTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp CCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAACACACAAGGAAACCAGATCTTGAAAGAGTaGTCTGTAGGTCTCATCTTT +
Preference number: 4 (lower is better)
Translates to: PSRYRMPLTTLTINTQGNQILKE*SVGLIF
Trigger: AAAGATGAGACCTACAGATCACTCTTTCAAGATCTG...GTTTCCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp CACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATCAATCACGAGATGGTACCCTTTAACATaGTTTCCAATGGTAATAACC +
Preference number: 4 (lower is better)
Translates to: HTRKPLCKALRRFLSITRWYPLT*FPMVIT
Trigger: GGTTATTACCATTGGAAAGCATGTTAAAGGGTACCA...TCTCGTGATTGATAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp TTAGTCATTATGAATCAAGAGACTAACAATAGTGGCTGCGGAAACGGGTTTGTTAAACACAGAGGGCTCTaGACTCCTCATATAAGTCCA +
Preference number: 4 (lower is better)
Translates to: LVIMNQETNNSGCGNGFVKHRGL*TPHISP
Trigger: TGGACTTATATGAGGAGTGCAGAGCCCTCTGTGTTT...AACAAACCCGTTTCCGCAGCCACTATTGTTAGTCTCTTGATTCATAATGACTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp TTTGACAATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATCCAAATTGTCGATATaGGGTGTCAGTCTGAACTCC +
Preference number: 4 (lower is better)
Translates to: FDNKHTRKPLCKALRRFLSKLSI*GVSLNS
Trigger: GGAGTTCAGACTGACACCCCATATCGACAATTTGGA...TAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATTGTCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp TATAAAACAGGTCACATCTTGATGCAGTTGATGTCAAGTGTGCTTAGTCATTATAAGGCACAGCTGGGTTaGCCAAACAATCTCCTGCAT +
Preference number: 4 (lower is better)
Translates to: YKTGHILMQLMSSVLSHYKAQLG*PNNLLH
Trigger: ATGCAGGAGATTGTTTGGCCAACCCAGCTGTGCCTT...ATAATGACTAAGCACACTTGACATCAACTGCATCAAGATGTGACCTGTTTTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp TCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCTTATATGGGGTGTCAGTCTaGACTCCGAAGTGGAAAACT +
Preference number: 4 (lower is better)
Translates to: SSDIEVEKDALFVINLSLYGVSV*TPKWKT
Trigger: AGTTTTCCACTTCGGAGTTCAGACTGACACCCCATA...TAAGGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp TTAGTCATTATGAATCAAGAGACTAACAATAGTGGCTGCGGAAACGGGTTTGTTGTGATGAAGGATACATaGAGTGTCCCACAGAATGAT +
Preference number: 4 (lower is better)
Translates to: LVIMNQETNNSGCGNGFVVMKDT*SVPQND
Trigger: ATCATTCTGTGGGACACTGCATGTATCCTTCATCAC...AACAAACCCGTTTCCGCAGCCACTATTGTTAGTCTCTTGATTCATAATGACTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp TGGGCATATTCCCACATCAGCACGCACATACATACACTTCATTTAAAATTAAAAAATCAAGCTAAGGAGTaGTCCTTTGAGGTCAGGTCG +
Preference number: 4 (lower is better)
Translates to: WAYSHISTHIHTLHLKLKNQAKE*SFEVRS
Trigger: CGACCTGACCTCAAAGGAGCACTCCTTAGCTTGATT...TTTTAATTTTAAATGAAGTGTATGTATGTGCGTGCTGATGTGGGAATATGCCCA
40% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
CDS-3UTR GCA 90 bp AAAGCCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAACACACAAGGAAATTCTGGGAATTCTaGGAGGAAGATGGGTTAATA +
Preference number: 4 (lower is better)
Translates to: KAFKISDASHHFDNKHTRKFWEF*EEDGLI
Trigger: TATTAACCCATCTTCCTCGCAGAATTCCCAGAATTT...CCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGGCTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
CDS-3UTR CCA 90 bp TCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCTTAATGCGTGCCATCTGTTaGGAAGCTTGGTGTGATGAA +
Preference number: 4 (lower is better)
Translates to: SSDIEVEKDALFVINLSLMRAIC*EAWCDE
Trigger: TTCATCACACCAAGCTTCCCAACAGATGGCACGCAT...TAAGGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp GCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAACCAATGGTAATAACCTaGTCCACAATGTCATTGACT +
Preference number: 4 (lower is better)
Translates to: AERKAFKISDASHHFDNKPMVIT*STMSLT
Trigger: AGTCAATGACATTGTGGACCAGGTTATTACCATTGG...TTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp TATAAAACAGGTCACATCTTGATGCAGTTGATGTCAAGTGTGCTTAGTCATTATCCCAGAGAGAGATCTTaGCGAAATATCGCATCCTTG +
Preference number: 4 (lower is better)
Translates to: YKTGHILMQLMSSVLSHYPRERS*RNIASL
Trigger: CAAGGATGCGATATTTCGCCAAGATCTCTCTCTGGG...ATAATGACTAAGCACACTTGACATCAACTGCATCAAGATGTGACCTGTTTTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp TCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCTTACCCAGAGAGAGATCTTaGCGAAATATCGCATCCTTG +
Preference number: 4 (lower is better)
Translates to: SSDIEVEKDALFVINLSLPRERS*RNIASL
Trigger: CAAGGATGCGATATTTCGCCAAGATCTCTCTCTGGG...TAAGGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR TCA 90 bp AATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATCAATCTCCCACAGAATGATGTaGTGGTATTTACAGACTTCT +
Preference number: 4 (lower is better)
Translates to: NKHTRKPLCKALRRFLSISHRMM*WYLQTS
Trigger: AGAAGTCTGTAAATACCATCACATCATTCTGTGGGA...GATTGATAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp GTTAAGAATTCTTGGCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCAGTAAATCCCAGATTTaGAATGATATAATGGTACCC +
Preference number: 4 (lower is better)
Translates to: VKNSWLKEKPSRYRMPLTSKSQI*NDIMVP
Trigger: GGGTACCATTATATCATTGCAAATCTGGGATTTACT...GGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGCCAAGAATTCTTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CCA 90 bp AATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATCAATCCCAATGGTAATAACCTaGTCCACAATGTCATTGACT +
Preference number: 4 (lower is better)
Translates to: NKHTRKPLCKALRRFLSIPMVIT*STMSLT
Trigger: AGTCAATGACATTGTGGACCAGGTTATTACCATTGG...GATTGATAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR CAA 72 bp TTGAGAGTGATTCTGATGCCTAGCAAATGTGTTTCTTaGCCTACTGCTGGTGGCATAATGAATTATGTATTG +
Preference number: 4 (lower is better)
Translates to: LRVILMPSKCVS*PTAGGIMNYVL
Trigger: CAATACATAATTCATTATGCCACCAGCAGTAGGCAAAGAAACACATTTGCTAGGCATCAGAATCACTCTCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
CDS-3UTR GCA 90 bp TGTCAAGTGTGCTTAGTCATTATGAATCAAGAGACTAACAATAGTGGCTGCGGAAGTAAATCCCAGATTTaGAATGATATAATGGTACCC +
Preference number: 4 (lower is better)
Translates to: CQVCLVIMNQETNNSGCGSKSQI*NDIMVP
Trigger: GGGTACCATTATATCATTGCAAATCTGGGATTTACT...TCCGCAGCCACTATTGTTAGTCTCTTGATTCATAATGACTAAGCACACTTGACA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp TTAGTCATTATGAATCAAGAGACTAACAATAGTGGCTGCGGAAACGGGTTTGTTAAATTCTGGGAATTCTaGGAGGAAGATGGGTTAATA +
Preference number: 4 (lower is better)
Translates to: LVIMNQETNNSGCGNGFVKFWEF*EEDGLI
Trigger: TATTAACCCATCTTCCTCGCAGAATTCCCAGAATTT...AACAAACCCGTTTCCGCAGCCACTATTGTTAGTCTCTTGATTCATAATGACTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
CDS-3UTR TCA 90 bp TATAAAACAGGTCACATCTTGATGCAGTTGATGTCAAGTGTGCTTAGTCATTATCAGATCTTGAAAGAGTaGTCTGTAGGTCTCATCTTT +
Preference number: 4 (lower is better)
Translates to: YKTGHILMQLMSSVLSHYQILKE*SVGLIF
Trigger: AAAGATGAGACCTACAGATCACTCTTTCAAGATCTG...ATAATGACTAAGCACACTTGACATCAACTGCATCAAGATGTGACCTGTTTTATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp AATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATCAATCAGTAAATCCCAGATTTaGAATGATATAATGGTACCC +
Preference number: 4 (lower is better)
Translates to: NKHTRKPLCKALRRFLSISKSQI*NDIMVP
Trigger: GGGTACCATTATATCATTGCAAATCTGGGATTTACT...GATTGATAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR GCA 90 bp TCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCTTATGGTACCCTTTAACATaGTTTCCAATGGTAATAACC +
Preference number: 4 (lower is better)
Translates to: SSDIEVEKDALFVINLSLWYPLT*FPMVIT
Trigger: GGTTATTACCATTGGAAAGCATGTTAAAGGGTACCA...TAAGGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
3UTR CAA 72 bp CTTCCGTTGATAAATTCGAAATTGTTCTGTACTTGGTaGGGAAATTCCCTGTTGCTACTTAAATTTCATCTA +
Preference number: 4 (lower is better)
Translates to: LPLINSKLFCTW*GNSLLLLKFHL
Trigger: TAGATGAAATTTAAGTAGCAACAGGGAATTTCCCAACCAAGTACAGAACAATTTCGAATTTATCAACGGAAG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
CDS-3UTR CAA 90 bp CACACTGACATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGCACTGCGTGACTGCGAAACTGTaGGCTACCTCCAAATTGTCG +
Preference number: 5 (lower is better)
Translates to: HTDIHSHARTHVRDSMHCVTAKL*ATSKLS
Trigger: CGACAATTTGGAGGTAGCCAACAGTTTCGCAGTCAC...GCAGTGCATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp TTCTGCTTCTTCAGAGAACCTCCTGCATCCTCCAGGAACTCTCCTGAATGTGGATCCCTGGCCCCATACTaGCCATCCCCAACAATAGTC +
Preference number: 5 (lower is better)
Translates to: FCFFREPPASSRNSPECGSLAPY*PSPTIV
Trigger: GACTATTGTTGGGGATGGCAAGTATGGGGCCAGGGA...TCCACATTCAGGAGAGTTCCTGGAGGATGCAGGAGGTTCTCTGAAGAAGCAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
CDS CCA 90 bp GCTAAGGAGTGCTCCTTTGAGGTCAGGTCGCATCTGGATGACAAATaGATGCGTGCCATCTGTTGGGAAGCTTGGTGTGATGAAGGATAC +
Preference number: 5 (lower is better)
Translates to: AKECSFEVRSHLDDK*MRAICWEAWCDEGY
Trigger: GTATCCTTCATCACACCAAGCTTCCCAACAGATGGCACGCATCCATTTGTCATCCAGATGCGACCTGACCTCAAAGGAGCACTCCTTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp AGTCACACTGACATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGCACGCCCAGAGAGAGATCTaGGCGAAATATCGCATCCTT +
Preference number: 5 (lower is better)
Translates to: SHTDIHSHARTHVRDSMHAQREI*AKYRIL
Trigger: AAGGATGCGATATTTCGCCAAGATCTCTCTCTGGGC...GTGCATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp ATCAGTCACACTGACATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGAATACTCCAGCAACGTaGCTCAGACTGAGGGCACTG +
Preference number: 5 (lower is better)
Translates to: ISHTDIHSHARTHVRDSMNTPAT*LRLRAL
Trigger: CAGTGCCCTCAGTCTGAGCAACGTTGCTGGAGTATT...CATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTGACTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
CDS CCA 90 bp TACTCAATCAAGCTAAGGAGTGCTCCTTTGAGGTCAGGTCGCATCTaGATGACAAATGGATGCGTGCCATCTGTTGGGAAGCTTGGTGTG +
Preference number: 5 (lower is better)
Translates to: YSIKLRSAPLRSGRI*MTNGCVPSVGKLGV
Trigger: CACACCAAGCTTCCCAACAGATGGCACGCATCCATTTGTCATCCAGATGCGACCTGACCTCAAAGGAGCACTCCTTAGCTTGATTGAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS TCA 90 bp CGAAACTGTTGGCTACCTCCAAATTGTCGATATGGGGTGTCAGTCTaGACTCCGAAGTGGAAAACTGAACCATCCCTACCCGAAATGCAC +
Preference number: 5 (lower is better)
Translates to: RNCWLPPNCRYGVSV*TPKWKTEPSLPEMH
Trigger: GTGCATTTCGGGTAGGGATGGTTCAGTTTTCCACTTCGGAGTTCAGACTGACACCCCATATCGACAATTTGGAGGTAGCCAACAGTTTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp AGTCACACTGACATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGCACTGGTCCACAATGTCATaGACTTTATCCCTTTCGCAG +
Preference number: 5 (lower is better)
Translates to: SHTDIHSHARTHVRDSMHWSTMS*TLSLSQ
Trigger: CTGCGAAAGGGATAAAGTCAATGACATTGTGGACCA...GTGCATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp AGTACTTCCATGTTAGCTGTGCATGTCCACCACGCTTCCTCTGACATCGAAGTACTCTGCTTCCGAAGATaGCGGAATGCTTCAGTCATC +
Preference number: 5 (lower is better)
Translates to: STSMLAVHVHHASSDIEVLCFRR*RNASVI
Trigger: GATGACTGAAGCATTCCGCAATCTTCGGAAGCAGAG...TACTTCGATGTCAGAGGAAGCGTGGTGGACATGCACAGCTAACATGGAAGTACT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp GGTTCCTATCAATCACGAGAGATCAGTCACACTGACATTCATTCCCATGCCAGGCTCTGCTTCCGAAGATaGCGGAATGCTTCAGTCATC +
Preference number: 5 (lower is better)
Translates to: GSYQSREISHTDIHSHARLCFRR*RNASVI
Trigger: GATGACTGAAGCATTCCGCAATCTTCGGAAGCAGAG...CCTGGCATGGGAATGAATGTCAGTGTGACTGATCTCTCGTGATTGATAGGAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp CGTCCATTTTCTCCAGTACTTCCTGTAATTGACAGCCTTGCCTTGTTCCTCGTGCTCTGCTTCCGAAGATaGCGGAATGCTTCAGTCATC +
Preference number: 5 (lower is better)
Translates to: RPFSPVLPVIDSLALFLVLCFRR*RNASVI
Trigger: GATGACTGAAGCATTCCGCAATCTTCGGAAGCAGAG...CACGAGGAACAAGGCAAGGCTGTCAATTACAGGAAGTACTGGAGAAAATGGACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp AGTACTTCCATGTTAGCTGTGCATGTCCACCACGCTTCCTCTGACATCGAAGTAGCCCAGAGAGAGATCTaGGCGAAATATCGCATCCTT +
Preference number: 5 (lower is better)
Translates to: STSMLAVHVHHASSDIEVAQREI*AKYRIL
Trigger: AAGGATGCGATATTTCGCCAAGATCTCTCTCTGGGC...TACTTCGATGTCAGAGGAAGCGTGGTGGACATGCACAGCTAACATGGAAGTACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp AAGAATTCTTGGCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTTCCCTGGCCCCATACTaGCCATCCCCAACAATAGTC +
Preference number: 5 (lower is better)
Translates to: KNSWLKEKPSRYRMPLTTSLAPY*PSPTIV
Trigger: GACTATTGTTGGGGATGGCAAGTATGGGGCCAGGGA...AGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGCCAAGAATTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS GCA 90 bp GTATGCGAACTTATCCCATTGGTAGTACTCAATCAAGCTAAGGAGTaGTCCTTTGAGGTCAGGTCGCATCTGGATGACAAATGGATGCGT +
Preference number: 5 (lower is better)
Translates to: VCELIPLVVLNQAKE*SFEVRSHLDDKWMR
Trigger: ACGCATCCATTTGTCATCCAGATGCGACCTGACCTCAAAGGAGCACTCCTTAGCTTGATTGAGTACTACCAATGGGATAAGTTCGCATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS GCA 90 bp TCTTTCTTGTCATTGTTAATGTTCCCCACATTGATAGCAGTCACCTaGCACTTCTTCTCCGCAGCAGAATCCAGCACAGCTTGCAGTGTT +
Preference number: 5 (lower is better)
Translates to: SFLSLLMFPTLIAVT*HFFSAAESSTACSV
Trigger: AACACTGCAAGCTGTGCTGGATTCTGCTGCGGAGAAGAAGTGGCAGGTGACTGCTATCAATGTGGGGAACATTAACAATGACAAGAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp GGTTCCTATCAATCACGAGAGATCAGTCACACTGACATTCATTCCCATGCCAGGGTGACAACCACAGTTTaGTTTTCAAGCCCAGATGTG +
Preference number: 5 (lower is better)
Translates to: GSYQSREISHTDIHSHARVTTTV*FSSPDV
Trigger: CACATCTGGGCTTGAAAACAAAACTGTGGTTGTCAC...CCTGGCATGGGAATGAATGTCAGTGTGACTGATCTCTCGTGATTGATAGGAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp TTAGTCATTATGAATCAAGAGACTAACAATAGTGGCTGCGGAAACGGGTTTGTTGCACTGGTCTTTTCCTaGGAATCACCTCCCCCGCTG +
Preference number: 5 (lower is better)
Translates to: LVIMNQETNNSGCGNGFVALVFS*ESPPPL
Trigger: CAGCGGGGGAGGTGATTCCAAGGAAAAGACCAGTGC...AACAAACCCGTTTCCGCAGCCACTATTGTTAGTCTCTTGATTCATAATGACTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
CDS-3UTR CAA 90 bp CCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAACACACAAGGAAACGTGACTGCGAAACTGTaGGCTACCTCCAAATTGTCG +
Preference number: 5 (lower is better)
Translates to: PSRYRMPLTTLTINTQGNVTAKL*ATSKLS
Trigger: CGACAATTTGGAGGTAGCCAACAGTTTCGCAGTCAC...GTTTCCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp AAAGCCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAACACACAAGGGCACAGCTTGCAGTGTaGATAAGCCTCTGTCACTGT +
Preference number: 5 (lower is better)
Translates to: KAFKISDASHHFDNKHTRAQLAV*ISLCHC
Trigger: ACAGTGACAGAGGCTTATCAACACTGCAAGCTGTGC...CCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGGCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp TTCTGCTTCTTCAGAGAACCTCCTGCATCCTCCAGGAACTCTCCTGAATGTGGATTGAATCCACAATGTTaGGCAATTTCTGCAGCTAAG +
Preference number: 5 (lower is better)
Translates to: FCFFREPPASSRNSPECGLNPQC*AISAAK
Trigger: CTTAGCTGCAGAAATTGCCAAACATTGTGGATTCAA...TCCACATTCAGGAGAGTTCCTGGAGGATGCAGGAGGTTCTCTGAAGAAGCAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
CDS-3UTR CAA 90 bp GCTTCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCTCCCTGGCCCCATACTaGCCATCCCCAACAATAGTC +
Preference number: 5 (lower is better)
Translates to: ASSDIEVEKDALFVINLSSLAPY*PSPTIV
Trigger: GACTATTGTTGGGGATGGCAAGTATGGGGCCAGGGA...GGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS TCA 90 bp AATTGTCGCTGTGTGTGCTCCAGGGTATTCTTTCTCTTCGAGTGTTaGCCATCTTTCTATAAATTTAGACACCAGGGAGTCGTCGTAGTC +
Preference number: 5 (lower is better)
Translates to: NCRCVCSRVFFLFEC*PSFYKFRHQGVVVV
Trigger: GACTACGACGACTCCCTGGTGTCTAAATTTATAGAAAGATGGTCAACACTCGAAGAGAAAGAATACCCTGGAGCACACACAGCGACAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp GCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAAGTGACTGCGAAACTGTaGGCTACCTCCAAATTGTCG +
Preference number: 5 (lower is better)
Translates to: AERKAFKISDASHHFDNKVTAKL*ATSKLS
Trigger: CGACAATTTGGAGGTAGCCAACAGTTTCGCAGTCAC...TTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp GTTAAGAATTCTTGGCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCTTAATGTTCCCCACATaGATAGCAGTCACCTGCCAC +
Preference number: 5 (lower is better)
Translates to: VKNSWLKEKPSRYRMPLTLMFPT*IAVTCH
Trigger: GTGGCAGGTGACTGCTATCAATGTGGGGAACATTAA...GGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGCCAAGAATTCTTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp AAAGCCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAACACACAAGGTTAATGTTCCCCACATaGATAGCAGTCACCTGCCAC +
Preference number: 5 (lower is better)
Translates to: KAFKISDASHHFDNKHTRLMFPT*IAVTCH
Trigger: GTGGCAGGTGACTGCTATCAATGTGGGGAACATTAA...CCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGGCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp ATCAGTCACACTGACATTCATTCCCATGCCAGGACTCACGTAAGGGACAGCATGTCATCTTTCTTGTCATaGTTAATGTTCCCCACATTG +
Preference number: 5 (lower is better)
Translates to: ISHTDIHSHARTHVRDSMSSFLS*LMFPTL
Trigger: CAATGTGGGGAACATTAACAATGACAAGAAAGATGA...CATGCTGTCCCTTACGTGAGTCCTGGCATGGGAATGAATGTCAGTGTGACTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp ACCCAGGCTAGTTTCTCCAAAAACCATTTTAGGAGCTGGCAAGCATCTATAACCTGGTCCACAATGTCATaGACTTTATCCCTTTCGCAG +
Preference number: 5 (lower is better)
Translates to: TQASFSKNHFRSWQASITWSTMS*TLSLSQ
Trigger: CTGCGAAAGGGATAAAGTCAATGACATTGTGGACCA...GGTTATAGATGCTTGCCAGCTCCTAAAATGGTTTTTGGAGAAACTAGCCTGGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075316.10
CDS-3UTR CAA 90 bp AGTACTTCCATGTTAGCTGTGCATGTCCACCACGCTTCCTCTGACATCGAAGTAGAAATCCAGAGACATTaGCTCCTCCAAACTGAATTT +
Preference number: 5 (lower is better)
Translates to: STSMLAVHVHHASSDIEVEIQRH*LLQTEF
Trigger: AAATTCAGTTTGGAGGAGCAAATGTCTCTGGATTTC...TACTTCGATGTCAGAGGAAGCGTGGTGGACATGCACAGCTAACATGGAAGTACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp CACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATCAATCACGAGAGTGACAACCACAGTTTaGTTTTCAAGCCCAGATGTG +
Preference number: 5 (lower is better)
Translates to: HTRKPLCKALRRFLSITRVTTTV*FSSPDV
Trigger: CACATCTGGGCTTGAAAACAAAACTGTGGTTGTCAC...TCTCGTGATTGATAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp GCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAAGCCCAGAGAGAGATCTaGGCGAAATATCGCATCCTT +
Preference number: 5 (lower is better)
Translates to: AERKAFKISDASHHFDNKAQREI*AKYRIL
Trigger: AAGGATGCGATATTTCGCCAAGATCTCTCTCTGGGC...TTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp CCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAACACACAAGGAAACAAATGCACTGTATTCTaGATCAGCGCCCCTTGGAAA +
Preference number: 5 (lower is better)
Translates to: PSRYRMPLTTLTINTQGNKCTVF*ISAPWK
Trigger: TTTCCAAGGGGCGCTGATCAAGAATACAGTGCATTT...GTTTCCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp AAGAATTCTTGGCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTAAATGCACTGTATTCTaGATCAGCGCCCCTTGGAAA +
Preference number: 5 (lower is better)
Translates to: KNSWLKEKPSRYRMPLTTKCTVF*ISAPWK
Trigger: TTTCCAAGGGGCGCTGATCAAGAATACAGTGCATTT...AGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGCCAAGAATTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp CACATCTTGATGCAGTTGATGTCAAGTGTGCTTAGTCATTATGAATCAAGAGACTGGGAGCAGAAAGCATaGGTGACTGCGAAACTGTTG +
Preference number: 5 (lower is better)
Translates to: HILMQLMSSVLSHYESRDWEQKA*VTAKLL
Trigger: CAACAGTTTCGCAGTCACCAATGCTTTCTGCTCCCA...GTCTCTTGATTCATAATGACTAAGCACACTTGACATCAACTGCATCAAGATGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp GCTTCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCGCACAGCTTGCAGTGTaGATAAGCCTCTGTCACTGT +
Preference number: 5 (lower is better)
Translates to: ASSDIEVEKDALFVINLSAQLAV*ISLCHC
Trigger: ACAGTGACAGAGGCTTATCAACACTGCAAGCTGTGC...GGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp CGTCCATTTTCTCCAGTACTTCCTGTAATTGACAGCCTTGCCTTGTTCCTCGTGTCATCTTTCTTGTCATaGTTAATGTTCCCCACATTG +
Preference number: 5 (lower is better)
Translates to: RPFSPVLPVIDSLALFLVSSFLS*LMFPTL
Trigger: CAATGTGGGGAACATTAACAATGACAAGAAAGATGA...CACGAGGAACAAGGCAAGGCTGTCAATTACAGGAAGTACTGGAGAAAATGGACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp AATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATCAATCTTGGCTACCTCCAAATaGTCGATATGGGGTGTCAGT +
Preference number: 5 (lower is better)
Translates to: NKHTRKPLCKALRRFLSILATSK*SIWGVS
Trigger: ACTGACACCCCATATCGACAATTTGGAGGTAGCCAA...GATTGATAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp CCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAACACACAAGGAAACTGCGAACTTATCCCATaGGTAGTACTCAATCAAGCT +
Preference number: 5 (lower is better)
Translates to: PSRYRMPLTTLTINTQGNCELIP*VVLNQA
Trigger: AGCTTGATTGAGTACTACCAATGGGATAAGTTCGCA...GTTTCCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp AAGAATTCTTGGCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTTGCGAACTTATCCCATaGGTAGTACTCAATCAAGCT +
Preference number: 5 (lower is better)
Translates to: KNSWLKEKPSRYRMPLTTCELIP*VVLNQA
Trigger: AGCTTGATTGAGTACTACCAATGGGATAAGTTCGCA...AGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGCCAAGAATTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp TATGGAACTGATACCATGGACCATTTTCCCCATCACTTCCCACACAGTTTGACTCCAACAATAGTCAGCTaGTACTTGAATCCACAATGT +
Preference number: 5 (lower is better)
Translates to: YGTDTMDHFPHHFPHSLTPTIVS*YLNPQC
Trigger: ACATTGTGGATTCAAGTACAAGCTGACTATTGTTGG...AGTCAAACTGTGTGGGAAGTGATGGGGAAAATGGTCCATGGTATCAGTTCCATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
CDS-3UTR CAA 90 bp CACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATCAATCACGAGAATAAGCAATTTCTGTTaGCTTAGACAGATCCTCAGC +
Preference number: 5 (lower is better)
Translates to: HTRKPLCKALRRFLSITRISNFC*LRQILS
Trigger: GCTGAGGATCTGTCTAAGCAAACAGAAATTGCTTAT...TCTCGTGATTGATAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp TATAAAACAGGTCACATCTTGATGCAGTTGATGTCAAGTGTGCTTAGTCATTATAATACTCCAGCAACGTaGCTCAGACTGAGGGCACTG +
Preference number: 5 (lower is better)
Translates to: YKTGHILMQLMSSVLSHYNTPAT*LRLRAL
Trigger: CAGTGCCCTCAGTCTGAGCAACGTTGCTGGAGTATT...ATAATGACTAAGCACACTTGACATCAACTGCATCAAGATGTGACCTGTTTTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
CDS-3UTR CAA 90 bp TTTGACAATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTAAAATGCACTGTATTCTaGATCAGCGCCCCTTGGAAA +
Preference number: 5 (lower is better)
Translates to: FDNKHTRKPLCKALRRFLKCTVF*ISAPWK
Trigger: TTTCCAAGGGGCGCTGATCAAGAATACAGTGCATTT...TAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATTGTCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp TATAAAACAGGTCACATCTTGATGCAGTTGATGTCAAGTGTGCTTAGTCATTATTGGGAGCAGAAAGCATaGGTGACTGCGAAACTGTTG +
Preference number: 5 (lower is better)
Translates to: YKTGHILMQLMSSVLSHYWEQKA*VTAKLL
Trigger: CAACAGTTTCGCAGTCACCAATGCTTTCTGCTCCCA...ATAATGACTAAGCACACTTGACATCAACTGCATCAAGATGTGACCTGTTTTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp TGTCAAGTGTGCTTAGTCATTATGAATCAAGAGACTAACAATAGTGGCTGCGGATGCGAACTTATCCCATaGGTAGTACTCAATCAAGCT +
Preference number: 5 (lower is better)
Translates to: CQVCLVIMNQETNNSGCGCELIP*VVLNQA
Trigger: AGCTTGATTGAGTACTACCAATGGGATAAGTTCGCA...TCCGCAGCCACTATTGTTAGTCTCTTGATTCATAATGACTAAGCACACTTGACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp AATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATCAATCTGGTCCACAATGTCATaGACTTTATCCCTTTCGCAG +
Preference number: 5 (lower is better)
Translates to: NKHTRKPLCKALRRFLSIWSTMS*TLSLSQ
Trigger: CTGCGAAAGGGATAAAGTCAATGACATTGTGGACCA...GATTGATAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp GCTTCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCGTGACAACCACAGTTTaGTTTTCAAGCCCAGATGTG +
Preference number: 5 (lower is better)
Translates to: ASSDIEVEKDALFVINLSVTTTV*FSSPDV
Trigger: CACATCTGGGCTTGAAAACAAAACTGTGGTTGTCAC...GGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGAAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp CCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAACACACAAGGAAACTTGAATCCACAATGTTaGGCAATTTCTGCAGCTAAG +
Preference number: 5 (lower is better)
Translates to: PSRYRMPLTTLTINTQGNLNPQC*AISAAK
Trigger: CTTAGCTGCAGAAATTGCCAAACATTGTGGATTCAA...GTTTCCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp CCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAACACACAAGGAAACATAAGCAATTTCTGTTaGCTTAGACAGATCCTCAGC +
Preference number: 5 (lower is better)
Translates to: PSRYRMPLTTLTINTQGNISNFC*LRQILS
Trigger: GCTGAGGATCTGTCTAAGCAAACAGAAATTGCTTAT...GTTTCCTTGTGTGTTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp TCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCTTATTGGCTACCTCCAAATaGTCGATATGGGGTGTCAGT +
Preference number: 5 (lower is better)
Translates to: SSDIEVEKDALFVINLSLLATSK*SIWGVS
Trigger: ACTGACACCCCATATCGACAATTTGGAGGTAGCCAA...TAAGGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp TCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCTTATTAATGTTCCCCACATaGATAGCAGTCACCTGCCAC +
Preference number: 5 (lower is better)
Translates to: SSDIEVEKDALFVINLSLLMFPT*IAVTCH
Trigger: GTGGCAGGTGACTGCTATCAATGTGGGGAACATTAA...TAAGGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp GCTGAAAGAAAAGCCTTCAAGATATCGGATGCCTCTCACCACTTTGACAATAAATTGAATCCACAATGTTaGGCAATTTCTGCAGCTAAG +
Preference number: 5 (lower is better)
Translates to: AERKAFKISDASHHFDNKLNPQC*AISAAK
Trigger: CTTAGCTGCAGAAATTGCCAAACATTGTGGATTCAA...TTTATTGTCAAAGTGGTGAGAGGCATCCGATATCTTGAAGGCTTTTCTTTCAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp TGTCAAGTGTGCTTAGTCATTATGAATCAAGAGACTAACAATAGTGGCTGCGGACCAACAATAGTCAGCTaGTACTTGAATCCACAATGT +
Preference number: 5 (lower is better)
Translates to: CQVCLVIMNQETNNSGCGPTIVS*YLNPQC
Trigger: ACATTGTGGATTCAAGTACAAGCTGACTATTGTTGG...TCCGCAGCCACTATTGTTAGTCTCTTGATTCATAATGACTAAGCACACTTGACA
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp CACATCTTGATGCAGTTGATGTCAAGTGTGCTTAGTCATTATGAATCAAGAGACCCAACAATAGTCAGCTaGTACTTGAATCCACAATGT +
Preference number: 5 (lower is better)
Translates to: HILMQLMSSVLSHYESRDPTIVS*YLNPQC
Trigger: ACATTGTGGATTCAAGTACAAGCTGACTATTGTTGG...GTCTCTTGATTCATAATGACTAAGCACACTTGACATCAACTGCATCAAGATGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp AATAAACACACAAGGAAACCATTGTGTAAGGCACTCAGAAGGTTCCTATCAATCTCATCTTTCTTGTCATaGTTAATGTTCCCCACATTG +
Preference number: 5 (lower is better)
Translates to: NKHTRKPLCKALRRFLSISSFLS*LMFPTL
Trigger: CAATGTGGGGAACATTAACAATGACAAGAAAGATGA...GATTGATAGGAACCTTCTGAGTGCCTTACACAATGGTTTCCTTGTGTGTTTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp TCCTCTGACATCGAAGTAGAAAAGGATGCTCTGTTTGTAATTAATCTTTCCTTAGAAATCCAGAGACATTaGCTCCTCCAAACTGAATTT +
Preference number: 5 (lower is better)
Translates to: SSDIEVEKDALFVINLSLEIQRH*LLQTEF
Trigger: AAATTCAGTTTGGAGGAGCAAATGTCTCTGGATTTC...TAAGGAAAGATTAATTACAAACAGAGCATCCTTTTCTACTTCGATGTCAGAGGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS-3UTR CAA 90 bp TATAAAACAGGTCACATCTTGATGCAGTTGATGTCAAGTGTGCTTAGTCATTATATAAGCAATTTCTGTTaGCTTAGACAGATCCTCAGC +
Preference number: 5 (lower is better)
Translates to: YKTGHILMQLMSSVLSHYISNFC*LRQILS
Trigger: GCTGAGGATCTGTCTAAGCAAACAGAAATTGCTTAT...ATAATGACTAAGCACACTTGACATCAACTGCATCAAGATGTGACCTGTTTTATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS CCA 72 bp TGCTCCTTTGAGGTCAGGTCGCATCTGGATGACAAATaGATGCGTGCCATCTGTTGGGAAGCTTGGTGTGAT +
Preference number: 6 (lower is better)
Translates to: CSFEVRSHLDDK*MRAICWEAWCD
Trigger: ATCACACCAAGCTTCCCAACAGATGGCACGCATCCATTTGTCATCCAGATGCGACCTGACCTCAAAGGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS CCA 72 bp AAGCTAAGGAGTGCTCCTTTGAGGTCAGGTCGCATCTaGATGACAAATGGATGCGTGCCATCTGTTGGGAAG +
Preference number: 6 (lower is better)
Translates to: KLRSAPLRSGRI*MTNGCVPSVGK
Trigger: CTTCCCAACAGATGGCACGCATCCATTTGTCATCCAGATGCGACCTGACCTCAAAGGAGCACTCCTTAGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS TCA 72 bp TGGCTACCTCCAAATTGTCGATATGGGGTGTCAGTCTaGACTCCGAAGTGGAAAACTGAACCATCCCTACCC +
Preference number: 6 (lower is better)
Translates to: WLPPNCRYGVSV*TPKWKTEPSLP
Trigger: GGGTAGGGATGGTTCAGTTTTCCACTTCGGAGTTCAGACTGACACCCCATATCGACAATTTGGAGGTAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS CAA 72 bp GCATTGGTGACTGCGAAACTGTTGGCTACCTCCAAATaGTCGATATGGGGTGTCAGTCTGAACTCCGAAGTG +
Preference number: 6 (lower is better)
Translates to: ALVTAKLLATSK*SIWGVSLNSEV
Trigger: CACTTCGGAGTTCAGACTGACACCCCATATCGACAATTTGGAGGTAGCCAACAGTTTCGCAGTCACCAATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS CAA 90 bp CCTCTTGAAAACTGGGAGCAGAAAGCATTGGTGACTGCGAAACTGTaGGCTACCTCCAAATTGTCGATATGGGGTGTCAGTCTGAACTCC +
Preference number: 6 (lower is better)
Translates to: PLENWEQKALVTAKL*ATSKLSIWGVSLNS
Trigger: GGAGTTCAGACTGACACCCCATATCGACAATTTGGAGGTAGCCAACAGTTTCGCAGTCACCAATGCTTTCTGCTCCCAGTTTTCAAGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS GCA 72 bp TCATTGTTAATGTTCCCCACATTGATAGCAGTCACCTaGCACTTCTTCTCCGCAGCAGAATCCAGCACAGCT +
Preference number: 6 (lower is better)
Translates to: SLLMFPTLIAVT*HFFSAAESSTA
Trigger: AGCTGTGCTGGATTCTGCTGCGGAGAAGAAGTGGCAGGTGACTGCTATCAATGTGGGGAACATTAACAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS CAA 72 bp AACTGGGAGCAGAAAGCATTGGTGACTGCGAAACTGTaGGCTACCTCCAAATTGTCGATATGGGGTGTCAGT +
Preference number: 6 (lower is better)
Translates to: NWEQKALVTAKL*ATSKLSIWGVS
Trigger: ACTGACACCCCATATCGACAATTTGGAGGTAGCCAACAGTTTCGCAGTCACCAATGCTTTCTGCTCCCAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS CAA 72 bp CCTCTCCTGGAGATTTCAATCCTCTGCTTCCGAAGATaGCGGAATGCTTCAGTCATCACTTGGACAGCATCA +
Preference number: 6 (lower is better)
Translates to: PLLEISILCFRR*RNASVITWTAS
Trigger: TGATGCTGTCCAAGTGATGACTGAAGCATTCCGCAATCTTCGGAAGCAGAGGATTGAAATCTCCAGGAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS CAA 90 bp TCCCTGGCCCCATACTTGCCATCCCCAACAATAGTCAGCTTGTACTaGAATCCACAATGTTTGGCAATTTCTGCAGCTAAGTCAACACAG +
Preference number: 6 (lower is better)
Translates to: SLAPYLPSPTIVSLY*NPQCLAISAAKSTQ
Trigger: CTGTGTTGACTTAGCTGCAGAAATTGCCAAACATTGTGGATTCAAGTACAAGCTGACTATTGTTGGGGATGGCAAGTATGGGGCCAGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS GCA 72 bp CTCTCCTGGAGATTTCAATCCTCTGCTTCCGAAGATTaGGGAATGCTTCAGTCATCACTTGGACAGCATCAT +
Preference number: 6 (lower is better)
Translates to: LSWRFQSSASED*GMLQSSLGQHH
Trigger: ATGATGCTGTCCAAGTGATGACTGAAGCATTCCGCAATCTTCGGAAGCAGAGGATTGAAATCTCCAGGAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS GCA 72 bp CTTATCCCATTGGTAGTACTCAATCAAGCTAAGGAGTaGTCCTTTGAGGTCAGGTCGCATCTGGATGACAAA +
Preference number: 6 (lower is better)
Translates to: LIPLVVLNQAKE*SFEVRSHLDDK
Trigger: TTTGTCATCCAGATGCGACCTGACCTCAAAGGAGCACTCCTTAGCTTGATTGAGTACTACCAATGGGATAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS TCA 72 bp TGTGTGTGCTCCAGGGTATTCTTTCTCTTCGAGTGTTaGCCATCTTTCTATAAATTTAGACACCAGGGAGTC +
Preference number: 6 (lower is better)
Translates to: CVCSRVFFLFEC*PSFYKFRHQGV
Trigger: GACTCCCTGGTGTCTAAATTTATAGAAAGATGGTCAACACTCGAAGAGAAAGAATACCCTGGAGCACACACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS CAA 72 bp TCTGTCACTGTCATAGAGGTATGCGAACTTATCCCATaGGTAGTACTCAATCAAGCTAAGGAGTGCTCCTTT +
Preference number: 6 (lower is better)
Translates to: SVTVIEVCELIP*VVLNQAKECSF
Trigger: AAAGGAGCACTCCTTAGCTTGATTGAGTACTACCAATGGGATAAGTTCGCATACCTCTATGACAGTGACAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS CAA 72 bp TGCTTTCCAATGGTAATAACCTGGTCCACAATGTCATaGACTTTATCCCTTTCGCAGTCAAGGATTACACGC +
Preference number: 6 (lower is better)
Translates to: CFPMVITWSTMS*TLSLSQSRITR
Trigger: GCGTGTAATCCTTGACTGCGAAAGGGATAAAGTCAATGACATTGTGGACCAGGTTATTACCATTGGAAAGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS CAA 72 bp TATGGAGATTCCAATATTGTGGTGACAACCACAGTTTaGTTTTCAAGCCCAGATGTGTCATTTCCAGAGGGG +
Preference number: 6 (lower is better)
Translates to: YGDSNIVVTTTV*FSSPDVSFPEG
Trigger: CCCCTCTGGAAATGACACATCTGGGCTTGAAAACAAAACTGTGGTTGTCACCACAATATTGGAATCTCCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS CAA 90 bp ATCATAACATATGGAGATTCCAATATTGTGGTGACAACCACAGTTTaGTTTTCAAGCCCAGATGTGTCATTTCCAGAGGGGAGCTCGGTT +
Preference number: 6 (lower is better)
Translates to: IITYGDSNIVVTTTV*FSSPDVSFPEGSSV
Trigger: AACCGAGCTCCCCTCTGGAAATGACACATCTGGGCTTGAAAACAAAACTGTGGTTGTCACCACAATATTGGAATCTCCATATGTTATGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2
CDS TCA 72 bp TGGTGTGATGAAGGATACATGCAGTGTCCCACAGAATaGTGTGATGGTATTTACAGACTTCTTGTCGTAAAA +
Preference number: 6 (lower is better)
Translates to: WCDEGYMQCPTE*CDGIYRLLVVK
Trigger: TTTTACGACAAGAAGTCTGTAAATACCATCACATCATTCTGTGGGACACTGCATGTATCCTTCATCACACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075316.10
ENSMUST00000107745.8
ENSMUST00000192463.2