Pregenerated sensors for GRCC10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000072772Ensembl transcript IDs: ENSMUST00000004389.6
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CTCTGGAACACAAGGGCCGCCTCCACAGCAGCAGCACACATACGAGAACCAATCGGCCTTCAGCTTGCCTaGCAGGCTGGCAATCTCGGG | + |
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Preference number: 4 (lower is better) Translates to: LWNTRAASTAAAHIREPIGLQLA*QAGNLG Trigger: CCCGAGATTGCCAGCCTGTCAGGCAAGCTGAAGGCC...GATTGGTTCTCGTATGTGTGCTGCTGCTGTGGAGGCGGCCCTTGTGTTCCAGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS-3UTR CCA 90 bp | ATCCTCTGGAACACAAGGGCCGCCTCCACAGCAGCAGCACACATACGAGAACCACCAGAAGCAGGCCCATaGGGCGGCAGTGTCATGGGT | + |
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Preference number: 4 (lower is better) Translates to: ILWNTRAASTAAAHIREPPEAGP*GGSVMG Trigger: ACCCATGACACTGCCGCCCCATGGGCCTGCTTCTGG...TGGTTCTCGTATGTGTGCTGCTGCTGTGGAGGCGGCCCTTGTGTTCCAGAGGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS-3UTR TCA 90 bp | CATTTATTATCCTCTGGAACACAAGGGCCGCCTCCACAGCAGCAGCACACATACGGGGCCGAGAACGCTTaGATCACCTCCGCCAGGACC | + |
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Preference number: 4 (lower is better) Translates to: HLLSSGTQGPPPQQQHTYGAENA*ITSART Trigger: GGTCCTGGCGGAGGTGATTCAAGCGTTCTCGGCCCC...GTATGTGTGCTGCTGCTGTGGAGGCGGCCCTTGTGTTCCAGAGGATAATAAATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS-3UTR CCA 90 bp | AAGTACATTTATTATCCTCTGGAACACAAGGGCCGCCTCCACAGCAGCAGCACAGGGGCGGCAGTGTCATaGGTGGCAGGAACAGGGCCT | + |
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Preference number: 4 (lower is better) Translates to: KYIYYPLEHKGRLHSSSTGAAVS*VAGTGP Trigger: AGGCCCTGTTCCTGCCACCCATGACACTGCCGCCCC...TGTGCTGCTGCTGTGGAGGCGGCCCTTGTGTTCCAGAGGATAATAAATGTACTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS-3UTR GCA 90 bp | CTCTGGAACACAAGGGCCGCCTCCACAGCAGCAGCACACATACGAGAACCAATCACGGGCAGCACAAATTaGAGCATCTTGCCCATATCG | + |
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Preference number: 4 (lower is better) Translates to: LWNTRAASTAAAHIREPITGSTN*SILPIS Trigger: CGATATGGGCAAGATGCTGCAATTTGTGCTGCCCGT...GATTGGTTCTCGTATGTGTGCTGCTGCTGTGGAGGCGGCCCTTGTGTTCCAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS-3UTR GCA 90 bp | ACAAGTACATTTATTATCCTCTGGAACACAAGGGCCGCCTCCACAGCAGCAGCACAAATTGCAGCATCTTaGCCATATCGTTGCACGCAT | + |
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Preference number: 4 (lower is better) Translates to: TSTFIILWNTRAASTAAAQIAAS*PYRCTH Trigger: ATGCGTGCAACGATATGGGCAAGATGCTGCAATTTG...TGCTGCTGCTGTGGAGGCGGCCCTTGTGTTCCAGAGGATAATAAATGTACTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS-3UTR CAA 90 bp | CAAGTACATTTATTATCCTCTGGAACACAAGGGCCGCCTCCACAGCAGCAGCACTCCGCCAGGACCACCTaGGCCTGCTCCGCGCTCAGG | + |
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Preference number: 5 (lower is better) Translates to: QVHLLSSGTQGPPPQQQHSARTT*ACSALR Trigger: CCTGAGCGCGGAGCAGGCCAAGGTGGTCCTGGCGGA...GTGCTGCTGCTGTGGAGGCGGCCCTTGTGTTCCAGAGGATAATAAATGTACTTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS-3UTR CAA 90 bp | TTATCCTCTGGAACACAAGGGCCGCCTCCACAGCAGCAGCACACATACGAGAACTGGGGCCGAGAACGCTaGAATCACCTCCGCCAGGAC | + |
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Preference number: 5 (lower is better) Translates to: LSSGTQGPPPQQQHTYENWGRER*NHLRQD Trigger: GTCCTGGCGGAGGTGATTCAAGCGTTCTCGGCCCCA...GTTCTCGTATGTGTGCTGCTGCTGTGGAGGCGGCCCTTGTGTTCCAGAGGATAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS-3UTR CAA 90 bp | TTATCCTCTGGAACACAAGGGCCGCCTCCACAGCAGCAGCACACATACGAGAACTACGGGCAGCACAAATaGCAGCATCTTGCCCATATC | + |
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Preference number: 5 (lower is better) Translates to: LSSGTQGPPPQQQHTYENYGQHK*QHLAHI Trigger: GATATGGGCAAGATGCTGCAATTTGTGCTGCCCGTA...GTTCTCGTATGTGTGCTGCTGCTGTGGAGGCGGCCCTTGTGTTCCAGAGGATAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS-3UTR CAA 90 bp | TACATTTATTATCCTCTGGAACACAAGGGCCGCCTCCACAGCAGCAGCACACATAACAGGGCCTTCAGCTaGCCTGACAGGCTGGCAATC | + |
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Preference number: 5 (lower is better) Translates to: YIYYPLEHKGRLHSSSTHNRAFS*PDRLAI Trigger: GATTGCCAGCCTGTCAGGCAAGCTGAAGGCCCTGTT...ATGTGTGCTGCTGCTGTGGAGGCGGCCCTTGTGTTCCAGAGGATAATAAATGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS-3UTR CAA 90 bp | ATCCTCTGGAACACAAGGGCCGCCTCCACAGCAGCAGCACACATACGAGAACCAGGCTTTAATAACCTCTaGTTGGATCTGTGTGGCTAC | + |
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Preference number: 5 (lower is better) Translates to: ILWNTRAASTAAAHIREPGFNNL*LDLCGY Trigger: GTAGCCACACAGATCCAACAAGAGGTTATTAAAGCC...TGGTTCTCGTATGTGTGCTGCTGCTGTGGAGGCGGCCCTTGTGTTCCAGAGGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS-3UTR CAA 90 bp | TATTATCCTCTGGAACACAAGGGCCGCCTCCACAGCAGCAGCACACATACGAGAACAAATTGCAGCATCTaGCCCATATCGTTGCACGCA | + |
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Preference number: 5 (lower is better) Translates to: YYPLEHKGRLHSSSTHTRTNCSI*PISLHA Trigger: TGCGTGCAACGATATGGGCAAGATGCTGCAATTTGT...TCTCGTATGTGTGCTGCTGCTGTGGAGGCGGCCCTTGTGTTCCAGAGGATAATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS GCA 90 bp | TTAATAACCTCTTGTTGGATCTGTGTGGCTACGGGCAGCACAAATTaGAGCATCTTGCCCATATCGTTGCACGCATTGTCTCTAGCCTCG | + |
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Preference number: 5 (lower is better) Translates to: LITSCWICVATGSTN*SILPISLHALSLAS Trigger: CGAGGCTAGAGACAATGCGTGCAACGATATGGGCAAGATGCTGCAATTTGTGCTGCCCGTAGCCACACAGATCCAACAAGAGGTTATTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS-3UTR CAA 90 bp | TTTATTATCCTCTGGAACACAAGGGCCGCCTCCACAGCAGCAGCACACATACGATTTAATAACCTCTTGTaGGATCTGTGTGGCTACGGG | + |
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Preference number: 5 (lower is better) Translates to: FIILWNTRAASTAAAHIRFNNLL*DLCGYG Trigger: CCCGTAGCCACACAGATCCAACAAGAGGTTATTAAA...TCGTATGTGTGCTGCTGCTGTGGAGGCGGCCCTTGTGTTCCAGAGGATAATAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS CAA 90 bp | TCTAGCCTCGTCCATGCGCACGGCATTCTCTGGGGCCGAGAACGCTaGAATCACCTCCGCCAGGACCACCTTGGCCTGCTCCGCGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: SSLVHAHGILWGRER*NHLRQDHLGLLRAQ Trigger: CTGAGCGCGGAGCAGGCCAAGGTGGTCCTGGCGGAGGTGATTCAAGCGTTCTCGGCCCCAGAGAATGCCGTGCGCATGGACGAGGCTAGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS CAA 72 bp | GTCCATGCGCACGGCATTCTCTGGGGCCGAGAACGCTaGAATCACCTCCGCCAGGACCACCTTGGCCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: VHAHGILWGRER*NHLRQDHLGLL Trigger: GAGCAGGCCAAGGTGGTCCTGGCGGAGGTGATTCAAGCGTTCTCGGCCCCAGAGAATGCCGTGCGCATGGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS CCA 72 bp | ATTGTCTCTAGCCTCGTCCATGCGCACGGCATTCTCTaGGGCCGAGAACGCTTGAATCACCTCCGCCAGGAC | + |
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Preference number: 6 (lower is better) Translates to: IVSSLVHAHGIL*GRERLNHLRQD Trigger: GTCCTGGCGGAGGTGATTCAAGCGTTCTCGGCCCCAGAGAATGCCGTGCGCATGGACGAGGCTAGAGACAAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS CAA 90 bp | ACGGGCAGCACAAATTGCAGCATCTTGCCCATATCGTTGCACGCATaGTCTCTAGCCTCGTCCATGCGCACGGCATTCTCTGGGGCCGAG | + |
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Preference number: 6 (lower is better) Translates to: TGSTNCSILPISLHA*SLASSMRTAFSGAE Trigger: CTCGGCCCCAGAGAATGCCGTGCGCATGGACGAGGCTAGAGACAATGCGTGCAACGATATGGGCAAGATGCTGCAATTTGTGCTGCCCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS CAA 72 bp | ACGGGCAGCACAAATTGCAGCATCTTGCCCATATCGTaGCACGCATTGTCTCTAGCCTCGTCCATGCGCACG | + |
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Preference number: 6 (lower is better) Translates to: TGSTNCSILPIS*HALSLASSMRT Trigger: CGTGCGCATGGACGAGGCTAGAGACAATGCGTGCAACGATATGGGCAAGATGCTGCAATTTGTGCTGCCCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS CAA 90 bp | TGTGTGGCTACGGGCAGCACAAATTGCAGCATCTTGCCCATATCGTaGCACGCATTGTCTCTAGCCTCGTCCATGCGCACGGCATTCTCT | + |
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Preference number: 6 (lower is better) Translates to: CVATGSTNCSILPIS*HALSLASSMRTAFS Trigger: AGAGAATGCCGTGCGCATGGACGAGGCTAGAGACAATGCGTGCAACGATATGGGCAAGATGCTGCAATTTGTGCTGCCCGTAGCCACACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS CAA 90 bp | TCTTGTTGGATCTGTGTGGCTACGGGCAGCACAAATTGCAGCATCTaGCCCATATCGTTGCACGCATTGTCTCTAGCCTCGTCCATGCGC | + |
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Preference number: 6 (lower is better) Translates to: SCWICVATGSTNCSI*PISLHALSLASSMR Trigger: GCGCATGGACGAGGCTAGAGACAATGCGTGCAACGATATGGGCAAGATGCTGCAATTTGTGCTGCCCGTAGCCACACAGATCCAACAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS CAA 72 bp | ATCTGTGTGGCTACGGGCAGCACAAATTGCAGCATCTaGCCCATATCGTTGCACGCATTGTCTCTAGCCTCG | + |
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Preference number: 6 (lower is better) Translates to: ICVATGSTNCSI*PISLHALSLAS Trigger: CGAGGCTAGAGACAATGCGTGCAACGATATGGGCAAGATGCTGCAATTTGTGCTGCCCGTAGCCACACAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS CAA 72 bp | ACAAATTGCAGCATCTTGCCCATATCGTTGCACGCATaGTCTCTAGCCTCGTCCATGCGCACGGCATTCTCT | + |
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Preference number: 6 (lower is better) Translates to: TNCSILPISLHA*SLASSMRTAFS Trigger: AGAGAATGCCGTGCGCATGGACGAGGCTAGAGACAATGCGTGCAACGATATGGGCAAGATGCTGCAATTTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS CAA 72 bp | CTCTTGTTGGATCTGTGTGGCTACGGGCAGCACAAATaGCAGCATCTTGCCCATATCGTTGCACGCATTGTC | + |
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Preference number: 6 (lower is better) Translates to: LLLDLCGYGQHK*QHLAHIVARIV Trigger: GACAATGCGTGCAACGATATGGGCAAGATGCTGCAATTTGTGCTGCCCGTAGCCACACAGATCCAACAAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS GCA 72 bp | TCTTGTTGGATCTGTGTGGCTACGGGCAGCACAAATTaGAGCATCTTGCCCATATCGTTGCACGCATTGTCT | + |
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Preference number: 6 (lower is better) Translates to: SCWICVATGSTN*SILPISLHALS Trigger: AGACAATGCGTGCAACGATATGGGCAAGATGCTGCAATTTGTGCTGCCCGTAGCCACACAGATCCAACAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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| CDS CAA 90 bp | TTTAATAACCTCTTGTTGGATCTGTGTGGCTACGGGCAGCACAAATaGCAGCATCTTGCCCATATCGTTGCACGCATTGTCTCTAGCCTC | + |
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Preference number: 6 (lower is better) Translates to: FNNLLLDLCGYGQHK*QHLAHIVARIVSSL Trigger: GAGGCTAGAGACAATGCGTGCAACGATATGGGCAAGATGCTGCAATTTGTGCTGCCCGTAGCCACACAGATCCAACAAGAGGTTATTAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004389.6 |
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