RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GRB10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020176

Ensembl transcript IDs: ENSMUST00000093321.12, ENSMUST00000109653.8, ENSMUST00000109654.8, ENSMUST00000143386.8, ENSMUST00000143915.2, ENSMUST00000150972.8

Found 282 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTCACCCTAAGCCAGCAGAGGCAAAGCCTCTGCATACCCTGCTCCTaGTGGCTTAGGGGGTTTTCAGTAGGGTGCAGAGGCCATCAAGCT +
Preference number: 1 (lower is better)
Translates to: LTLSQQRQSLCIPCS*WLRGFSVGCRGHQA
Trigger: AGCTTGATGGCCTCTGCACCCTACTGAAAACCCCCTAAGCCAGCAGGAGCAGGGTATGCAGAGGCTTTGCCTCTGCTGGCTTAGGGTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR GCA 90 bp GTACTTCTCACCCTAAGCCAGCAGAGGCAAAGCCTCTGCATACCCTaGTCCTGCTGGCTTAGGGGGTTTTCAGTAGGGTGCAGAGGCCAT +
Preference number: 1 (lower is better)
Translates to: VLLTLSQQRQSLCIP*SCWLRGFSVGCRGH
Trigger: ATGGCCTCTGCACCCTACTGAAAACCCCCTAAGCCAGCAGGAGCAGGGTATGCAGAGGCTTTGCCTCTGCTGGCTTAGGGTGAGAAGTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR CCA 90 bp ACCCTAAGCCAGCAGAGGCAAAGCCTCTGCATACCCTGCTCCTGCTaGCTTAGGGGGTTTTCAGTAGGGTGCAGAGGCCATCAAGCTTTC +
Preference number: 1 (lower is better)
Translates to: TLSQQRQSLCIPCSC*LRGFSVGCRGHQAF
Trigger: GAAAGCTTGATGGCCTCTGCACCCTACTGAAAACCCCCTAAGCCAGCAGGAGCAGGGTATGCAGAGGCTTTGCCTCTGCTGGCTTAGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR GCA 90 bp TGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATaGAGATCTCTCTTCTCCGTTCCAGTGTCGCTGCCTCCAGCCTCT +
Preference number: 1 (lower is better)
Translates to: CSESLGGSRCVFSPS*RSLFSVPVSLPPAS
Trigger: AGAGGCTGGAGGCAGCGACACTGGAACGGAGAAGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
3UTR GCA 90 bp CATTGTGAGGTACTTCTCACCCTAAGCCAGCAGAGGCAAAGCCTCTaGATACCCTGCTCCTGCTGGCTTAGGGGGTTTTCAGTAGGGTGC +
Preference number: 1 (lower is better)
Translates to: HCEVLLTLSQQRQSL*IPCSCWLRGFSVGC
Trigger: GCACCCTACTGAAAACCCCCTAAGCCAGCAGGAGCAGGGTATGCAGAGGCTTTGCCTCTGCTGGCTTAGGGTGAGAAGTACCTCACAATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR CCA 90 bp GCTGGCGATCTCGGGGCCACTGAAGTCTGCTACACTCAAGGTGGGTaGGTTGCAGCCTTCAACAATTCACTTCGGCAAGGGAAGTACAAA +
Preference number: 1 (lower is better)
Translates to: AGDLGATEVCYTQGG*VAAFNNSLRQGKYK
Trigger: TTTGTACTTCCCTTGCCGAAGTGAATTGTTGAAGGCTGCAACCCACCCACCTTGAGTGTAGCAGACTTCAGTGGCCCCGAGATCGCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR TCA 90 bp CAGTCTGAAGCTGAGGTCATGCAGCTGTGCTGTGCTGGGGAACAGTaGGTTTTCCAAAGTAATGAGGTCTCCAGCACCGTGGAGAACGAG +
Preference number: 1 (lower is better)
Translates to: QSEAEVMQLCCAGEQ*VFQSNEVSSTVENE
Trigger: CTCGTTCTCCACGGTGCTGGAGACCTCATTACTTTGGAAAACTCACTGTTCCCCAGCACAGCACAGCTGCATGACCTCAGCTTCAGACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR TCA 90 bp TTTACCGGTCACTGCAGTTTGCACTATGACATCACAAATCTACGATaGGCTAGAAGCGCCCTCGGAGGCACAGCGATCGAACAGGCTGTC +
Preference number: 1 (lower is better)
Translates to: FTGHCSLHYDITNLR*ARSALGGTAIEQAV
Trigger: GACAGCCTGTTCGATCGCTGTGCCTCCGAGGGCGCTTCTAGCTCATCGTAGATTTGTGATGTCATAGTGCAAACTGCAGTGACCGGTAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR GCA 90 bp CTCTGCATACCCTGCTCCTGCTGGCTTAGGGGGTTTTCAGTAGGGTaGAGAGGCCATCAAGCTTTCAAAGACTCAAAGCCAGCTTATGCT +
Preference number: 1 (lower is better)
Translates to: LCIPCSCWLRGFSVG*RGHQAFKDSKPAYA
Trigger: AGCATAAGCTGGCTTTGAGTCTTTGAAAGCTTGATGGCCTCTGCACCCTACTGAAAACCCCCTAAGCCAGCAGGAGCAGGGTATGCAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR TCA 90 bp ATGAGGTCTCCAGCACCGTGGAGAACGAGACACACTAATAATACATaGCCAGACGTCAGCACAACAACAACGATGACCAGACTGTGGCAG +
Preference number: 1 (lower is better)
Translates to: MRSPAPWRTRHTNNT*PDVSTTTTMTRLWQ
Trigger: CTGCCACAGTCTGGTCATCGTTGTTGTTGTGCTGACGTCTGGTCATGTATTATTAGTGTGTCTCGTTCTCCACGGTGCTGGAGACCTCAT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR GCA 90 bp GTGAACTACAGTGTTTCTCTACTGTGGGCCAGCTTGCCACTGGCCTaGTTTACAAAGCGCTGTCATATCTATCTTCCACTATGCTGTCAA +
Preference number: 1 (lower is better)
Translates to: VNYSVSLLWASLPLA*FTKRCHIYLPLCCQ
Trigger: TTGACAGCATAGTGGAAGATAGATATGACAGCGCTTTGTAAAGCAGGCCAGTGGCAAGCTGGCCCACAGTAGAGAAACACTGTAGTTCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR TCA 90 bp GCAAACATCATGCTCCTAAAATCTGTCCAATGTTCACATCCATTGTaGGGTACTTCTCACCCTAAGCCAGCAGAGGCAAAGCCTCTGCAT +
Preference number: 1 (lower is better)
Translates to: ANIMLLKSVQCSHPL*GTSHPKPAEAKPLH
Trigger: ATGCAGAGGCTTTGCCTCTGCTGGCTTAGGGTGAGAAGTACCTCACAATGGATGTGAACATTGGACAGATTTTAGGAGCATGATGTTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR GCA 90 bp TTGTTGTCTGTGTGTTTCTCAAGGCAATCCTGTCTGCTACTCTCATaGCTGATAAATCATCAAGGGGACAACAGAGGGTCCTTCATGGAG +
Preference number: 1 (lower is better)
Translates to: LLSVCFSRQSCLLLS*LINHQGDNRGSFME
Trigger: CTCCATGAAGGACCCTCTGTTGTCCCCTTGATGATTTATCAGGCATGAGAGTAGCAGACAGGATTGCCTTGAGAAACACACAGACAACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR GCA 90 bp CTGAAAACGGTTACATGTCAGGTCATTTTACCGGTCACTGCAGTTTaGACTATGACATCACAAATCTACGATGAGCTAGAAGCGCCCTCG +
Preference number: 1 (lower is better)
Translates to: LKTVTCQVILPVTAV*TMTSQIYDELEAPS
Trigger: CGAGGGCGCTTCTAGCTCATCGTAGATTTGTGATGTCATAGTGCAAACTGCAGTGACCGGTAAAATGACCTGACATGTAACCGTTTTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR CCA 90 bp ATAGAACAGAGTCTACCTATTAAAACCCTAAAAACCCAAAGCATTTaGCAGTTTCCTTCTCAACTTAGTCCAGGTGGTTACACGGAGTCG +
Preference number: 1 (lower is better)
Translates to: IEQSLPIKTLKTQSI*QFPSQLSPGGYTES
Trigger: CGACTCCGTGTAACCACCTGGACTAAGTTGAGAAGGAAACTGCCAAATGCTTTGGGTTTTTAGGGTTTTAATAGGTAGACTCTGTTCTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR CAA 90 bp GCGATCTCGGGGCCACTGAAGTCTGCTACACTCAAGGTGGGTGGGTaGCAGCCTTCAACAATTCACTTCGGCAAGGGAAGTACAAAGTTC +
Preference number: 2 (lower is better)
Translates to: AISGPLKSATLKVGG*QPSTIHFGKGSTKF
Trigger: GAACTTTGTACTTCCCTTGCCGAAGTGAATTGTTGAAGGCTGCAACCCACCCACCTTGAGTGTAGCAGACTTCAGTGGCCCCGAGATCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR-3UTR GCA 90 bp TGTCTGCTACTCTCATGCCTGATAAATCATCAAGGGGACAACAGAGGGTCCTTCGAGCCAAACCCACACTaGCGCAACCTGCAGAGAGCA +
Preference number: 2 (lower is better)
Translates to: CLLLSCLINHQGDNRGSFEPNPH*RNLQRA
Trigger: TGCTCTCTGCAGGTTGCGGCAGTGTGGGTTTGGCTC...GAAGGACCCTCTGTTGTCCCCTTGATGATTTATCAGGCATGAGAGTAGCAGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR-3UTR CCA 90 bp CTGTCAACCATGGCAAATCAGAAGTGGCTCCCTGGGGAGCACTTCAATGAGTCGATACCCTGCTCCTGCTaGCTTAGGGGGTTTTCAGTA +
Preference number: 2 (lower is better)
Translates to: LSTMANQKWLPGEHFNESIPCSC*LRGFSV
Trigger: TACTGAAAACCCCCTAAGCCAGCAGGAGCAGGGTAT...CGACTCATTGAAGTGCTCCCCAGGGAGCCACTTCTGATTTGCCATGGTTGACAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR CAA 90 bp GTAGGTCGGTTGGTACCGATCAAAAAGCCATGTTGTTCTGAGTCCTaGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTC +
Preference number: 2 (lower is better)
Translates to: VGRLVPIKKPCCSES*GGSRCVFSPSCRSL
Trigger: GAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACAACATGGCTTTTTGATCGGTACCAACCGACCTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
3UTR-3UTR GCA 90 bp ACTGGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGCAGAGGGAGGTGGTCGTGTTCTCACCCTCATaGAGATCTCTCTTCTCCGTT +
Preference number: 2 (lower is better)
Translates to: TGSLPSPNFKWLTQREVVVFSPS*RSLFSV
Trigger: AACGGAGAAGAGAGATCTGCATGAGGGTGAGAACAC...GACCACCTCCCTCTGCGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
3UTR-3UTR GCA 90 bp AACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTACGTATACTGTGGGCCAGCTTaGCACTGGCCTGCTTTACAA +
Preference number: 2 (lower is better)
Translates to: NNSLRQGKYKVLRQTSYVYCGPA*HWPALQ
Trigger: TTGTAAAGCAGGCCAGTGGCAAGCTGGCCCACAGTA...TACGTAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR-3UTR CCA 90 bp AACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTACGTAGCAGCTGTGCTGTGCTaGGGAACAGTGAGTTTTCCA +
Preference number: 2 (lower is better)
Translates to: NNSLRQGKYKVLRQTSYVAAVLC*GTVSFP
Trigger: TGGAAAACTCACTGTTCCCCAGCACAGCACAGCTGC...TACGTAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR-3UTR GCA 90 bp TTGTCTGTGTGTTTCTCAAGGCAATCCTGTCTGCTACTCTCATGCCTGATAAATGTTTCTTCCCACACTTaGACTGGATCTCTTCCCTCC +
Preference number: 2 (lower is better)
Translates to: LSVCFSRQSCLLLSCLINVSSHT*TGSLPS
Trigger: GGAGGGAAGAGATCCAGTGCAAGTGTGGGAAGAAAC...ATTTATCAGGCATGAGAGTAGCAGACAGGATTGCCTTGAGAAACACACAGACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR-3UTR CCA 90 bp TGTCTGCTACTCTCATGCCTGATAAATCATCAAGGGGACAACAGAGGGTCCTTCGGTTTTCACCCTACGTaGCCTAATCAAAATCGTCAT +
Preference number: 2 (lower is better)
Translates to: CLLLSCLINHQGDNRGSFGFHPT*PNQNRH
Trigger: ATGACGATTTTGATTAGGCCACGTAGGGTGAAAACC...GAAGGACCCTCTGTTGTCCCCTTGATGATTTATCAGGCATGAGAGTAGCAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR-3UTR CCA 90 bp CTTCTCAACTTAGTCCAGGTGGTTACACGGAGTCGTCATTTAGAAAAGAAAATCAGGTCTCCAGCACCGTaGAGAACGAGACACACTAAT +
Preference number: 2 (lower is better)
Translates to: LLNLVQVVTRSRHLEKKIRSPAP*RTRHTN
Trigger: ATTAGTGTGTCTCGTTCTCCACGGTGCTGGAGACCT...GATTTTCTTTTCTAAATGACGACTCCGTGTAACCACCTGGACTAAGTTGAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR-3UTR CCA 90 bp AACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTACGTACTATGCTGTCAACCATaGCAAATCAGAAGTGGCTCC +
Preference number: 2 (lower is better)
Translates to: NNSLRQGKYKVLRQTSYVLCCQP*QIRSGS
Trigger: GGAGCCACTTCTGATTTGCCATGGTTGACAGCATAG...TACGTAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR-3UTR TCA 90 bp AACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTACGTATGTGCTGGGGAACAGTaGGTTTTCCAAAGTAATGAG +
Preference number: 2 (lower is better)
Translates to: NNSLRQGKYKVLRQTSYVCAGEQ*VFQSNE
Trigger: CTCATTACTTTGGAAAACTCACTGTTCCCCAGCACA...TACGTAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR-3UTR TCA 90 bp CTTCTCAACTTAGTCCAGGTGGTTACACGGAGTCGTCATTTAGAAAAGAAAATCTGTGCTGGGGAACAGTaGGTTTTCCAAAGTAATGAG +
Preference number: 2 (lower is better)
Translates to: LLNLVQVVTRSRHLEKKICAGEQ*VFQSNE
Trigger: CTCATTACTTTGGAAAACTCACTGTTCCCCAGCACA...GATTTTCTTTTCTAAATGACGACTCCGTGTAACCACCTGGACTAAGTTGAGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR-3UTR GCA 90 bp CTTCAACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTAATGCTAGGTGTCAACTaGGGTTGTCACCTTTTATCT +
Preference number: 2 (lower is better)
Translates to: LQQFTSAREVQSSTSNQLMLGVN*GCHLLS
Trigger: AGATAAAAGGTGACAACCGCAGTTGACACCTAGCAT...TAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR-3UTR CCA 90 bp AACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTACGTAGGTTTTCACCCTACGTaGCCTAATCAAAATCGTCAT +
Preference number: 2 (lower is better)
Translates to: NNSLRQGKYKVLRQTSYVGFHPT*PNQNRH
Trigger: ATGACGATTTTGATTAGGCCACGTAGGGTGAAAACC...TACGTAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR-3UTR CCA 90 bp CTTCAACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTAAGCAGACTTTCTGGGTaGTATCAAGAAAGGGAAATG +
Preference number: 2 (lower is better)
Translates to: LQQFTSAREVQSSTSNQLSRLSG*YQEREM
Trigger: CATTTCCCTTTCTTGATACCACCCAGAAAGTCTGCT...TAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTTGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR-3UTR TCA 90 bp CTTCAACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTACAAAAATTCTTTGTCTaGTCTGAGTTGCAAAGCCAC +
Preference number: 2 (lower is better)
Translates to: LQQFTSAREVQSSTSNQLQKFFV*SELQSH
Trigger: GTGGCTTTGCAACTCAGATCAGACAAAGAATTTTTG...TAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTTGAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR-3UTR TCA 90 bp TCTGACCTTAAGTCAGCAAAAAGAAATGAGCACGGTAAAACTGAAATGTCTGTTCGGTTGCATGGTCTGTaGACTACAGTGTTTCTCTAC +
Preference number: 2 (lower is better)
Translates to: SDLKSAKRNEHGKTEMSVRLHGL*TTVFLY
Trigger: GTAGAGAAACACTGTAGTTCACAGACCATGCAACCG...AACAGACATTTCAGTTTTACCGTGCTCATTTCTTTTTGCTGACTTAAGGTCAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR TCA 72 bp GCTGCCTGTGCAAAGGGCTGGCGATCTCGGGGCCACTaGAGTCTGCTACACTCAAGGTGGGTGGGTTGCAGC +
Preference number: 3 (lower is better)
Translates to: AACAKGWRSRGH*SLLHSRWVGCS
Trigger: GCTGCAACCCACCCACCTTGAGTGTAGCAGACTTCAGTGGCCCCGAGATCGCCAGCCCTTTGCACAGGCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR GCA 72 bp AGCCAGCAGAGGCAAAGCCTCTGCATACCCTGCTCCTaGTGGCTTAGGGGGTTTTCAGTAGGGTGCAGAGGC +
Preference number: 3 (lower is better)
Translates to: SQQRQSLCIPCS*WLRGFSVGCRG
Trigger: GCCTCTGCACCCTACTGAAAACCCCCTAAGCCAGCAGGAGCAGGGTATGCAGAGGCTTTGCCTCTGCTGGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR GCA 72 bp ACCCTAAGCCAGCAGAGGCAAAGCCTCTGCATACCCTaGTCCTGCTGGCTTAGGGGGTTTTCAGTAGGGTGC +
Preference number: 3 (lower is better)
Translates to: TLSQQRQSLCIP*SCWLRGFSVGC
Trigger: GCACCCTACTGAAAACCCCCTAAGCCAGCAGGAGCAGGGTATGCAGAGGCTTTGCCTCTGCTGGCTTAGGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR CCA 72 bp CAGCAGAGGCAAAGCCTCTGCATACCCTGCTCCTGCTaGCTTAGGGGGTTTTCAGTAGGGTGCAGAGGCCAT +
Preference number: 3 (lower is better)
Translates to: QQRQSLCIPCSC*LRGFSVGCRGH
Trigger: ATGGCCTCTGCACCCTACTGAAAACCCCCTAAGCCAGCAGGAGCAGGGTATGCAGAGGCTTTGCCTCTGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR CCA 72 bp CTGCAGAGGGTAAAGGCAGCGATTATTCTACAACAGTaGGCGGCTGTGAAAATGGGAGGCACAGGGCACCCC +
Preference number: 3 (lower is better)
Translates to: LQRVKAAIILQQ*AAVKMGGTGHP
Trigger: GGGGTGCCCTGTGCCTCCCATTTTCACAGCCGCCCACTGTTGTAGAATAATCGCTGCCTTTACCCTCTGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR CCA 72 bp CTCGGGGCCACTGAAGTCTGCTACACTCAAGGTGGGTaGGTTGCAGCCTTCAACAATTCACTTCGGCAAGGG +
Preference number: 3 (lower is better)
Translates to: LGATEVCYTQGG*VAAFNNSLRQG
Trigger: CCCTTGCCGAAGTGAATTGTTGAAGGCTGCAACCCACCCACCTTGAGTGTAGCAGACTTCAGTGGCCCCGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR GCA 72 bp GTACTTCTCACCCTAAGCCAGCAGAGGCAAAGCCTCTaGATACCCTGCTCCTGCTGGCTTAGGGGGTTTTCA +
Preference number: 3 (lower is better)
Translates to: VLLTLSQQRQSL*IPCSCWLRGFS
Trigger: TGAAAACCCCCTAAGCCAGCAGGAGCAGGGTATGCAGAGGCTTTGCCTCTGCTGGCTTAGGGTGAGAAGTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR TCA 72 bp GCACTGGATCTCTTCCCTCCCCCAATTTTAAATGGCTaGCGCAGAGGGAGGTGGTCCTGTTTGATCCACAGC +
Preference number: 3 (lower is better)
Translates to: ALDLFPPPILNG*RRGRWSCLIHS
Trigger: GCTGTGGATCAAACAGGACCACCTCCCTCTGCGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
3UTR TCA 72 bp GGCAAATCAGAAGTGGCTCCCTGGGGAGCACTTCAATaGGTCGGGACAGGCAATCTAGTGGCTAACTCAGGT +
Preference number: 3 (lower is better)
Translates to: GKSEVAPWGALQ*VGTGNLVANSG
Trigger: ACCTGAGTTAGCCACTAGATTGCCTGTCCCGACTCATTGAAGTGCTCCCCAGGGAGCCACTTCTGATTTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR GCA 72 bp CCCTGCTCCTGCTGGCTTAGGGGGTTTTCAGTAGGGTaGAGAGGCCATCAAGCTTTCAAAGACTCAAAGCCA +
Preference number: 3 (lower is better)
Translates to: PCSCWLRGFSVG*RGHQAFKDSKP
Trigger: TGGCTTTGAGTCTTTGAAAGCTTGATGGCCTCTGCACCCTACTGAAAACCCCCTAAGCCAGCAGGAGCAGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR CCA 72 bp TCTTCCACTATGCTGTCAACCATGGCAAATCAGAAGTaGCTCCCTGGGGAGCACTTCAATGAGTCGGGACAG +
Preference number: 3 (lower is better)
Translates to: SSTMLSTMANQK*LPGEHFNESGQ
Trigger: CTGTCCCGACTCATTGAAGTGCTCCCCAGGGAGCCACTTCTGATTTGCCATGGTTGACAGCATAGTGGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR TCA 72 bp CACTGCAGTTTGCACTATGACATCACAAATCTACGATaGGCTAGAAGCGCCCTCGGAGGCACAGCGATCGAA +
Preference number: 3 (lower is better)
Translates to: HCSLHYDITNLR*ARSALGGTAIE
Trigger: TTCGATCGCTGTGCCTCCGAGGGCGCTTCTAGCTCATCGTAGATTTGTGATGTCATAGTGCAAACTGCAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR CCA 72 bp ACTTGCACTGGATCTCTTCCCTCCCCCAATTTTAAATaGCTGACGCAGAGGGAGGTGGTCCTGTTTGATCCA +
Preference number: 3 (lower is better)
Translates to: TCTGSLPSPNFK*LTQREVVLFDP
Trigger: TGGATCAAACAGGACCACCTCCCTCTGCGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGTGCAAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
3UTR CCA 72 bp TGGTACCGATCAAAAAGCCATGTTGTTCTGAGTCCTTaGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCA +
Preference number: 3 (lower is better)
Translates to: WYRSKSHVVLSP*VGVGVCSHPHA
Trigger: TGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACAACATGGCTTTTTGATCGGTACCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
3UTR TCA 72 bp CCAGCACCGTGGAGAACGAGACACACTAATAATACATaGCCAGACGTCAGCACAACAACAACGATGACCAGA +
Preference number: 3 (lower is better)
Translates to: PAPWRTRHTNNT*PDVSTTTTMTR
Trigger: TCTGGTCATCGTTGTTGTTGTGCTGACGTCTGGTCATGTATTATTAGTGTGTCTCGTTCTCCACGGTGCTGG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR GCA 72 bp AGTGTTTCTCTACTGTGGGCCAGCTTGCCACTGGCCTaGTTTACAAAGCGCTGTCATATCTATCTTCCACTA +
Preference number: 3 (lower is better)
Translates to: SVSLLWASLPLA*FTKRCHIYLPL
Trigger: TAGTGGAAGATAGATATGACAGCGCTTTGTAAAGCAGGCCAGTGGCAAGCTGGCCCACAGTAGAGAAACACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR CCA 72 bp ACTACAGTGTTTCTCTACTGTGGGCCAGCTTGCCACTaGCCTGCTTTACAAAGCGCTGTCATATCTATCTTC +
Preference number: 3 (lower is better)
Translates to: TTVFLYCGPACH*PALQSAVISIF
Trigger: GAAGATAGATATGACAGCGCTTTGTAAAGCAGGCCAGTGGCAAGCTGGCCCACAGTAGAGAAACACTGTAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR TCA 72 bp CTGAGTTGCAAAGCCACATCCTCTCCTACCATAGGCTaGGTACAACATCGACAACGAAGAAGGAGTGCAAAA +
Preference number: 3 (lower is better)
Translates to: LSCKATSSPTIG*VQHRQRRRSAK
Trigger: TTTTGCACTCCTTCTTCGTTGTCGATGTTGTACTCAGCCTATGGTAGGAGAGGATGTGGCTTTGCAACTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR TCA 72 bp ATAATACATGACCAGACGTCAGCACAACAACAACGATaGCCAGACTGTGGCAGCTTGACTGCGTCCACAAAA +
Preference number: 3 (lower is better)
Translates to: IIHDQTSAQQQR*PDCGSLTASTK
Trigger: TTTTGTGGACGCAGTCAAGCTGCCACAGTCTGGTCATCGTTGTTGTTGTGCTGACGTCTGGTCATGTATTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR TCA 72 bp ATGCTCCTAAAATCTGTCCAATGTTCACATCCATTGTaGGGTACTTCTCACCCTAAGCCAGCAGAGGCAAAG +
Preference number: 3 (lower is better)
Translates to: MLLKSVQCSHPL*GTSHPKPAEAK
Trigger: CTTTGCCTCTGCTGGCTTAGGGTGAGAAGTACCTCACAATGGATGTGAACATTGGACAGATTTTAGGAGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR-3UTR CAA 90 bp CTTCTCAACTTAGTCCAGGTGGTTACACGGAGTCGTCATTTAGAAAAGAAAATCACATCGCGGTTTGAATaGTCAAGGTTATTCCAGGGC +
Preference number: 3 (lower is better)
Translates to: LLNLVQVVTRSRHLEKKITSRFE*SRLFQG
Trigger: GCCCTGGAATAACCTTGACAATTCAAACCGCGATGT...GATTTTCTTTTCTAAATGACGACTCCGTGTAACCACCTGGACTAAGTTGAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR TCA 72 bp AGGTTTTGTCTATTAGTTAACACCCTCTGCATTCCCTaGAAACGGTTACATGTCAGGTCATTTTACCGGTCA +
Preference number: 3 (lower is better)
Translates to: RFCLLVNTLCIP*KRLHVRSFYRS
Trigger: TGACCGGTAAAATGACCTGACATGTAACCGTTTTCAGGGAATGCAGAGGGTGTTAACTAATAGACAAAACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR GCA 72 bp GTTACATGTCAGGTCATTTTACCGGTCACTGCAGTTTaGACTATGACATCACAAATCTACGATGAGCTAGAA +
Preference number: 3 (lower is better)
Translates to: VTCQVILPVTAV*TMTSQIYDELE
Trigger: TTCTAGCTCATCGTAGATTTGTGATGTCATAGTGCAAACTGCAGTGACCGGTAAAATGACCTGACATGTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR GCA 72 bp TTCATTTGTTGTAATAACATCTCGTGGAAACACGGTTaGATGGTCTGTGAACTACAGTGTTTCTCTACTGTG +
Preference number: 3 (lower is better)
Translates to: FICCNNISWKHG*MVCELQCFSTV
Trigger: CACAGTAGAGAAACACTGTAGTTCACAGACCATGCAACCGTGTTTCCACGAGATGTTATTACAACAAATGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp CCCTCATGCAGATCTCTCTTCTCCGTTCCAGTGTCGCTGCCTCCAGCCTCTGTGCAGGGGCCGCACCAGTaGGCTCCGGAAATGGGTTGG +
Preference number: 4 (lower is better)
Translates to: PSCRSLFSVPVSLPPASVQGPHQ*APEMGW
Trigger: CCAACCCATTTCCGGAGCTCACTGGTGCGGCCCCTG...CACAGAGGCTGGAGGCAGCGACACTGGAACGGAGAAGAGAGATCTGCATGAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp TGCAGATCTCTCTTCTCCGTTCCAGTGTCGCTGCCTCCAGCCTCTGTGAGTGGGTGCAGAAGCTGCGCCTaGCCACCGTTGGACTGCTGG +
Preference number: 4 (lower is better)
Translates to: CRSLFSVPVSLPPASVSGCRSCA*PPLDCW
Trigger: CCAGCAGTCCAACGGTGGCCAGGCGCAGCTTCTGCA...CCCACTCACAGAGGCTGGAGGCAGCGACACTGGAACGGAGAAGAGAGATCTGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp AGGCTGGCTGACATCAGTCTGAAGCTGAGGTCATGCAGCTGTGCTGTGCTGGGGGAAATGCTTGGCAGGTaGCTGGCTCGGAGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: RLADISLKLRSCSCAVLGEMLGR*LARRRR
Trigger: CCTCCTCCTCCGAGCCAGCCACCTGCCAAGCATTTC...CCCCAGCACAGCACAGCTGCATGACCTCAGCTTCAGACTGATGTCAGCCAGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093321.12
CDS-3UTR TCA 90 bp CTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTCAGGGGCCGCACCAGTaGGCTCCGGAAATGGGTTGG +
Preference number: 4 (lower is better)
Translates to: LSPWVGVGVCSHPHADLSQGPHQ*APEMGW
Trigger: CCAACCCATTTCCGGAGCTCACTGGTGCGGCCCCTG...AGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CCCTCATGCAGATCTCTCTTCTCCGTTCCAGTGTCGCTGCCTCCAGCCTCTGTGCTGCTCCCTGGTTGCTaGCATGCTGGCCATCCTCAA +
Preference number: 4 (lower is better)
Translates to: PSCRSLFSVPVSLPPASVLLPGC*HAGHPQ
Trigger: TTGAGGATGGCCAGCATGCCAGCAACCAGGGAGCAG...CACAGAGGCTGGAGGCAGCGACACTGGAACGGAGAAGAGAGATCTGCATGAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp GAGGTACTTCTCACCCTAAGCCAGCAGAGGCAAAGCCTCTGCATACCCTGCTCCATCATGCTTGGCAGGTaGCTGGCTCGGAGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: EVLLTLSQQRQSLCIPCSIMLGR*LARRRR
Trigger: CCTCCTCCTCCGAGCCAGCCACCTGCCAAGCATGAT...GGAGCAGGGTATGCAGAGGCTTTGCCTCTGCTGGCTTAGGGTGAGAAGTACCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp ACTGGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGCAGAGGGAGGTGGTCCCTCCTGAAGGCGCCTaGGAATGTGCACAGGCTGCG +
Preference number: 4 (lower is better)
Translates to: TGSLPSPNFKWLTQREVVPPEGA*ECAQAA
Trigger: CGCAGCCTGTGCACATTCTCAGGCGCCTTCAGGAGG...GACCACCTCCCTCTGCGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp TCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCCCTCCTGAAGGCGCCTaGGAATGTGCACAGGCTGCG +
Preference number: 4 (lower is better)
Translates to: SESLGGSRCVFSPSCRSLPPEGA*ECAQAA
Trigger: CGCAGCCTGTGCACATTCTCAGGCGCCTTCAGGAGG...GAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp TGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTTCTCCGTTCCCTCCTGAAGGCGCCTaGGAATGTGCACAGGCTGCG +
Preference number: 4 (lower is better)
Translates to: WVGVGVCSHPHADLSSPFPPEGA*ECAQAA
Trigger: CGCAGCCTGTGCACATTCTCAGGCGCCTTCAGGAGG...GAACGGAGAAGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp TGCAGATCTCTCTTCTCCGTTCCAGTGTCGCTGCCTCCAGCCTCTGTGAGTGGGCCCTGGTTGCTGGCATaGTGGCCATCCTCAAGAAGT +
Preference number: 4 (lower is better)
Translates to: CRSLFSVPVSLPPASVSGPWLLA*WPSSRS
Trigger: ACTTCTTGAGGATGGCCAGCATGCCAGCAACCAGGG...CCCACTCACAGAGGCTGGAGGCAGCGACACTGGAACGGAGAAGAGAGATCTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp AGGCTGGCTGACATCAGTCTGAAGCTGAGGTCATGCAGCTGTGCTGTGCTGGGGAAATTCTGCAGAAGCTaGGCCTGGCCACCGTTGGAC +
Preference number: 4 (lower is better)
Translates to: RLADISLKLRSCSCAVLGKFCRS*AWPPLD
Trigger: GTCCAACGGTGGCCAGGCGCAGCTTCTGCAGAATTT...CCCCAGCACAGCACAGCTGCATGACCTCAGCTTCAGACTGATGTCAGCCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp GAGGTACTTCTCACCCTAAGCCAGCAGAGGCAAAGCCTCTGCATACCCTGCTCCCTGCTCCCTGGTTGCTaGCATGCTGGCCATCCTCAA +
Preference number: 4 (lower is better)
Translates to: EVLLTLSQQRQSLCIPCSLLPGC*HAGHPQ
Trigger: TTGAGGATGGCCAGCATGCCAGCAACCAGGGAGCAG...GGAGCAGGGTATGCAGAGGCTTTGCCTCTGCTGGCTTAGGGTGAGAAGTACCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTTCTCCGCTGGAGGGAAATGCTTaGCAGGTGGCTGGCTCGGAG +
Preference number: 4 (lower is better)
Translates to: PWVGVGVCSHPHADLSSPLEGNA*QVAGSE
Trigger: CTCCGAGCCAGCCACCTGCCAAGCATTTCCCTCCAG...CGGAGAAGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
CDS-3UTR CCA 90 bp TCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTGCAGAAGCTGCGCCTaGCCACCGTTGGACTGCTGG +
Preference number: 4 (lower is better)
Translates to: SESLGGSRCVFSPSCRSLCRSCA*PPLDCW
Trigger: CCAGCAGTCCAACGGTGGCCAGGCGCAGCTTCTGCA...GAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTTCTCCGGCCACGCGGATGCAGTaGTGTTTCAGCTTGCAGGGC +
Preference number: 4 (lower is better)
Translates to: PWVGVGVCSHPHADLSSPATRMQ*CFSLQG
Trigger: GCCCTGCAAGCTGAAACACCACTGCATCCGCGTGGC...CGGAGAAGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp TGCAGATCTCTCTTCTCCGTTCCAGTGTCGCTGCCTCCAGCCTCTGTGAGTGGGAGGTCAGCCAGCAGCTaGAGGTGTCTGGGTTCTTTT +
Preference number: 4 (lower is better)
Translates to: CRSLFSVPVSLPPASVSGRSASS*RCLGSF
Trigger: AAAAGAACCCAGACACCTGCAGCTGCTGGCTGACCT...CCCACTCACAGAGGCTGGAGGCAGCGACACTGGAACGGAGAAGAGAGATCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CCCTCATGCAGATCTCTCTTCTCCGTTCCAGTGTCGCTGCCTCCAGCCTCTGTGAGGTCAGCCAGCAGCTaGAGGTGTCTGGGTTCTTTT +
Preference number: 4 (lower is better)
Translates to: PSCRSLFSVPVSLPPASVRSASS*RCLGSF
Trigger: AAAAGAACCCAGACACCTGCAGCTGCTGGCTGACCT...CACAGAGGCTGGAGGCAGCGACACTGGAACGGAGAAGAGAGATCTGCATGAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CCCTCATGCAGATCTCTCTTCTCCGTTCCAGTGTCGCTGCCTCCAGCCTCTGTGATAAGGCCACGCGGATaGAGTGGTGTTTCAGCTTGC +
Preference number: 4 (lower is better)
Translates to: PSCRSLFSVPVSLPPASVIRPRG*SGVSAC
Trigger: GCAAGCTGAAACACCACTGCATCCGCGTGGCCTTAT...CACAGAGGCTGGAGGCAGCGACACTGGAACGGAGAAGAGAGATCTGCATGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CATGTTGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGGTTCCTGCAGAAGCTaGGCCTGGCCACCGTTGGAC +
Preference number: 4 (lower is better)
Translates to: HVVLSPWVGVGVCSHPHAGSCRS*AWPPLD
Trigger: GTCCAACGGTGGCCAGGCGCAGCTTCTGCAGGAACC...TGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACAACATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109653.8
CDS-3UTR GCA 90 bp CTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTAGGTGTCTGGGTTCCTaGAGAAGCTGCGCCTGGCCA +
Preference number: 4 (lower is better)
Translates to: LSPWVGVGVCSHPHADLSRCLGS*RSCAWP
Trigger: TGGCCAGGCGCAGCTTCTGCAGGAACCCAGACACCT...AGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109653.8
CDS-3UTR GCA 90 bp TGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTTCTCCGTTCAGGTCAGCCAGCAGCTaGAGGTGTCTGGGTTCCTGC +
Preference number: 4 (lower is better)
Translates to: WVGVGVCSHPHADLSSPFRSASS*RCLGSC
Trigger: GCAGGAACCCAGACACCTGCAGCTGCTGGCTGACCT...GAACGGAGAAGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109653.8
CDS-3UTR CCA 90 bp CCCTCATGCAGATCTCTCTTCTCCGTTCCAGTGTCGCTGCCTCCAGCCTCTGTGTGGTTGCTGGCATGCTaGCCATCCTCAAGAAGTGGT +
Preference number: 4 (lower is better)
Translates to: PSCRSLFSVPVSLPPASVWLLAC*PSSRSG
Trigger: ACCACTTCTTGAGGATGGCCAGCATGCCAGCAACCA...CACAGAGGCTGGAGGCAGCGACACTGGAACGGAGAAGAGAGATCTGCATGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp ACTGGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGCAGAGGGAGGTGGTCCAGCTTCTCCATCTGTaGAGTGGGCATCCGTGCCAC +
Preference number: 4 (lower is better)
Translates to: TGSLPSPNFKWLTQREVVQLLHL*SGHPCH
Trigger: GTGGCACGGATGCCCACTTCACAGATGGAGAAGCTG...GACCACCTCCCTCTGCGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
CDS-3UTR GCA 90 bp CCCTCATGCAGATCTCTCTTCTCCGTTCCAGTGTCGCTGCCTCCAGCCTCTGTGAGAATGTGCACAGGCTaGGAGCGTTGCATTTTCTGC +
Preference number: 4 (lower is better)
Translates to: PSCRSLFSVPVSLPPASVRMCTG*ERCIFC
Trigger: GCAGAAAATGCAACGCTCGCAGCCTGTGCACATTCT...CACAGAGGCTGGAGGCAGCGACACTGGAACGGAGAAGAGAGATCTGCATGAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp AGGCTGGCTGACATCAGTCTGAAGCTGAGGTCATGCAGCTGTGCTGTGCTGGGGAATAGAGGCCAGATCTaGGCAGGCACACATACAGCT +
Preference number: 4 (lower is better)
Translates to: RLADISLKLRSCSCAVLGNRGQI*AGTHTA
Trigger: AGCTGTATGTGTGCCTGCGCAGATCTGGCCTCTATT...CCCCAGCACAGCACAGCTGCATGACCTCAGCTTCAGACTGATGTCAGCCAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp TGCAGATCTCTCTTCTCCGTTCCAGTGTCGCTGCCTCCAGCCTCTGTGAGTGGGTTCAGGGTAGAAGGATaGAGTGGGCTTTGGCTGCTT +
Preference number: 4 (lower is better)
Translates to: CRSLFSVPVSLPPASVSGFRVEG*SGLWLL
Trigger: AAGCAGCCAAAGCCCACTGCATCCTTCTACCCTGAA...CCCACTCACAGAGGCTGGAGGCAGCGACACTGGAACGGAGAAGAGAGATCTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp GTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCGCTCCGGAAATGGGTTaGGGATGGCCGGAAGAGATG +
Preference number: 4 (lower is better)
Translates to: VLSPWVGVGVCSHPHADLAPEMG*GWPEEM
Trigger: CATCTCTTCCGGCCATCCCCAACCCATTTCCGGAGC...GAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp AGGCTGGCTGACATCAGTCTGAAGCTGAGGTCATGCAGCTGTGCTGTGCTGGGGTGCTCTCACTTGGCATaGTACTCTCCACTTGGACCA +
Preference number: 4 (lower is better)
Translates to: RLADISLKLRSCSCAVLGCSHLA*YSPLGP
Trigger: TGGTCCAAGTGGAGAGTACCATGCCAAGTGAGAGCA...CCCCAGCACAGCACAGCTGCATGACCTCAGCTTCAGACTGATGTCAGCCAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp TGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTTCCAGGGCAGCACTCTaGGCTTCAGCCGGGTTATCG +
Preference number: 4 (lower is better)
Translates to: CSESLGGSRCVFSPSCRSSRAAL*ASAGLS
Trigger: CGATAACCCGGCTGAAGCCCAGAGTGCTGCCCTGGA...AGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CATGTTGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGCCACGCGGATGCAGTaGTGTTTCAGCTTGCAGGGC +
Preference number: 4 (lower is better)
Translates to: HVVLSPWVGVGVCSHPHAATRMQ*CFSLQG
Trigger: GCCCTGCAAGCTGAAACACCACTGCATCCGCGTGGC...TGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACAACATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp TGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCAGCTTCTCCATCTGTaGAGTGGGCATCCGTGCCAC +
Preference number: 4 (lower is better)
Translates to: CSESLGGSRCVFSPSCRSQLLHL*SGHPCH
Trigger: GTGGCACGGATGCCCACTTCACAGATGGAGAAGCTG...AGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
CDS-3UTR GCA 90 bp ACTGGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGCAGAGGGAGGTGGTCCCCTGGTTGCTGGCATaGTGGCCATCCTCAAGAAGT +
Preference number: 4 (lower is better)
Translates to: TGSLPSPNFKWLTQREVVPWLLA*WPSSRS
Trigger: ACTTCTTGAGGATGGCCAGCATGCCAGCAACCAGGG...GACCACCTCCCTCTGCGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp GAGGTACTTCTCACCCTAAGCCAGCAGAGGCAAAGCCTCTGCATACCCTGCTCCCCTACCTCTTTCACCTaGAAGAACCCCTGGATCTCA +
Preference number: 4 (lower is better)
Translates to: EVLLTLSQQRQSLCIPCSPTSFT*KNPWIS
Trigger: TGAGATCCAGGGGTTCTTGCAGGTGAAAGAGGTAGG...GGAGCAGGGTATGCAGAGGCTTTGCCTCTGCTGGCTTAGGGTGAGAAGTACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CCCTCATGCAGATCTCTCTTCTCCGTTCCAGTGTCGCTGCCTCCAGCCTCTGTGTCAGGTAGAAGATGCTaGTTTCTTCCAGGTCAGCCA +
Preference number: 4 (lower is better)
Translates to: PSCRSLFSVPVSLPPASVSGRRC*FLPGQP
Trigger: TGGCTGACCTGGAAGAAAGCAGCATCTTCTACCTGA...CACAGAGGCTGGAGGCAGCGACACTGGAACGGAGAAGAGAGATCTGCATGAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp TGCAGATCTCTCTTCTCCGTTCCAGTGTCGCTGCCTCCAGCCTCTGTGAGTGGGAGTGGTGTTTCAGCTTaGAGGGCAGAACACCTTTGT +
Preference number: 4 (lower is better)
Translates to: CRSLFSVPVSLPPASVSGSGVSA*RAEHLC
Trigger: ACAAAGGTGTTCTGCCCTGCAAGCTGAAACACCACT...CCCACTCACAGAGGCTGGAGGCAGCGACACTGGAACGGAGAAGAGAGATCTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTTCTCCGATAAGGCCACGCGGATaGAGTGGTGTTTCAGCTTGC +
Preference number: 4 (lower is better)
Translates to: PWVGVGVCSHPHADLSSPIRPRG*SGVSAC
Trigger: GCAAGCTGAAACACCACTGCATCCGCGTGGCCTTAT...CGGAGAAGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp TCTTCCCACACTTGCACTGGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGGAAATGCTTGGCAGGTaGCTGGCTCGGAGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: SSHTCTGSLPSPNFKWLTEMLGR*LARRRR
Trigger: CCTCCTCCTCCGAGCCAGCCACCTGCCAAGCATTTC...CGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGTGCAAGTGTGGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
CDS-3UTR CCA 90 bp CCGATCAAAAAGCCATGTTGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCCTGGAGGGAAATGCTTaGCAGGTGGCTGGCTCGGAG +
Preference number: 4 (lower is better)
Translates to: PIKKPCCSESLGGSRCVFLEGNA*QVAGSE
Trigger: CTCCGAGCCAGCCACCTGCCAAGCATTTCCCTCCAG...GAACACACACCTACTCCCACCCAAGGACTCAGAACAACATGGCTTTTTGATCGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
CDS-3UTR CCA 90 bp TCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCCGACAGCTGAAAGCCTaGAGGGAAATGCTTGGCAGG +
Preference number: 4 (lower is better)
Translates to: SESLGGSRCVFSPSCRSLRQLKA*REMLGR
Trigger: CCTGCCAAGCATTTCCCTCCAGGCTTTCAGCTGTCG...GAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
CDS-3UTR CCA 90 bp TGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTTCTCCGTTCGCTGGCACAGGTCCCTaGCTGTCATGTCGGTTAGAA +
Preference number: 4 (lower is better)
Translates to: WVGVGVCSHPHADLSSPFAGTGP*LSCRLE
Trigger: TTCTAACCGACATGACAGCCAGGGACCTGTGCCAGC...GAACGGAGAAGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp ACTGGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGCAGAGGGAGGTGGTCTGGACCACGATCTCATaGTCCTCCAGGCACCTCTCT +
Preference number: 4 (lower is better)
Translates to: TGSLPSPNFKWLTQREVVWTTIS*SSRHLS
Trigger: AGAGAGGTGCCTGGAGGACCATGAGATCGTGGTCCA...GACCACCTCCCTCTGCGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp TGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTTCTCCGTTCTGGACCACGATCTCATaGTCCTCCAGGCACCTCTCT +
Preference number: 4 (lower is better)
Translates to: WVGVGVCSHPHADLSSPFWTTIS*SSRHLS
Trigger: AGAGAGGTGCCTGGAGGACCATGAGATCGTGGTCCA...GAACGGAGAAGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CATGTTGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAACCTGCAAGAACCCCTaGATCTCAGGGCAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: HVVLSPWVGVGVCSHPHATCKNP*ISGQLL
Trigger: CAGCAGCTGCCCTGAGATCCAGGGGTTCTTGCAGGT...TGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACAACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp TCTTCCCACACTTGCACTGGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGGCCACGCGGATGCAGTaGTGTTTCAGCTTGCAGGGC +
Preference number: 4 (lower is better)
Translates to: SSHTCTGSLPSPNFKWLTATRMQ*CFSLQG
Trigger: GCCCTGCAAGCTGAAACACCACTGCATCCGCGTGGC...CGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGTGCAAGTGTGGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
3UTR CAA 72 bp GGGCCACTGAAGTCTGCTACACTCAAGGTGGGTGGGTaGCAGCCTTCAACAATTCACTTCGGCAAGGGAAGT +
Preference number: 4 (lower is better)
Translates to: GPLKSATLKVGG*QPSTIHFGKGS
Trigger: ACTTCCCTTGCCGAAGTGAATTGTTGAAGGCTGCAACCCACCCACCTTGAGTGTAGCAGACTTCAGTGGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp TCTTCCCACACTTGCACTGGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGTGCTGGTCTTCCTCCTaGAGGCGCCTGAGAATGTGC +
Preference number: 4 (lower is better)
Translates to: SSHTCTGSLPSPNFKWLTCWSSS*RRLRMC
Trigger: GCACATTCTCAGGCGCCTTCAGGAGGAAGACCAGCA...CGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGTGCAAGTGTGGGAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp TCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCGTGAGTTTCGACAGCTaGAAGCCTGGAGGGAAATGC +
Preference number: 4 (lower is better)
Translates to: SESLGGSRCVFSPSCRSLVSFDS*KPGGKC
Trigger: GCATTTCCCTCCAGGCTTTCAGCTGTCGAAACTCAC...GAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
CDS-3UTR TCA 90 bp CTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTACTGCTGGCACCAATTaGCCATCTGATCCGGGAAGA +
Preference number: 4 (lower is better)
Translates to: LSPWVGVGVCSHPHADLSTAGTN*PSDPGR
Trigger: TCTTCCCGGATCAGATGGTCAATTGGTGCCAGCAGT...AGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTTCTCCGAGAGTGAAGAAGGTCTaGCCATCATCCTCGCAAGGT +
Preference number: 4 (lower is better)
Translates to: PWVGVGVCSHPHADLSSPRVKKV*PSSSQG
Trigger: ACCTTGCGAGGATGATGGGCAGACCTTCTTCACTCT...CGGAGAAGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp GGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGCAGAGGGAGGTGGTCCTGAGAGTGAAGAAGGTCTaGCCATCATCCTCGCAAGGT +
Preference number: 4 (lower is better)
Translates to: GSLPSPNFKWLTQREVVLRVKKV*PSSSQG
Trigger: ACCTTGCGAGGATGATGGGCAGACCTTCTTCACTCT...CAGGACCACCTCCCTCTGCGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp GTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTGGTTGCTGGCATGCTaGCCATCCTCAAGAAGTGGT +
Preference number: 4 (lower is better)
Translates to: VLSPWVGVGVCSHPHADLWLLAC*PSSRSG
Trigger: ACCACTTCTTGAGGATGGCCAGCATGCCAGCAACCA...GAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp ACTGGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGCAGAGGGAGGTGGTCTGGTTGCTGGCATGCTaGCCATCCTCAAGAAGTGGT +
Preference number: 4 (lower is better)
Translates to: TGSLPSPNFKWLTQREVVWLLAC*PSSRSG
Trigger: ACCACTTCTTGAGGATGGCCAGCATGCCAGCAACCA...GACCACCTCCCTCTGCGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp AAAAGCCATGTTGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTGCTCCGGAAATGGGTTaGGGATGGCCGGAAGAGATG +
Preference number: 4 (lower is better)
Translates to: KSHVVLSPWVGVGVCSHPAPEMG*GWPEEM
Trigger: CATCTCTTCCGGCCATCCCCAACCCATTTCCGGAGC...AGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACAACATGGCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp ACTGGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGCAGAGGGAGGTGGTCTCTCCATCTGTGAAGTaGGCATCCGTGCCACTGGAT +
Preference number: 4 (lower is better)
Translates to: TGSLPSPNFKWLTQREVVSPSVK*ASVPLD
Trigger: ATCCAGTGGCACGGATGCCCACTTCACAGATGGAGA...GACCACCTCCCTCTGCGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
CDS-3UTR CCA 90 bp TGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTGCTGGCACAGGTCCCTaGCTGTCATGTCGGTTAGAA +
Preference number: 4 (lower is better)
Translates to: CSESLGGSRCVFSPSCRSAGTGP*LSCRLE
Trigger: TTCTAACCGACATGACAGCCAGGGACCTGTGCCAGC...AGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTTCTCCGTGCTCTCACTTGGCATaGTACTCTCCACTTGGACCA +
Preference number: 4 (lower is better)
Translates to: PWVGVGVCSHPHADLSSPCSHLA*YSPLGP
Trigger: TGGTCCAAGTGGAGAGTACCATGCCAAGTGAGAGCA...CGGAGAAGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp TGCAGATCTCTCTTCTCCGTTCCAGTGTCGCTGCCTCCAGCCTCTGTGAGTGGGGAATTTGCTCTCACTTaGCATGGTACTCTCCACTTG +
Preference number: 4 (lower is better)
Translates to: CRSLFSVPVSLPPASVSGEFALT*HGTLHL
Trigger: CAAGTGGAGAGTACCATGCCAAGTGAGAGCAAATTC...CCCACTCACAGAGGCTGGAGGCAGCGACACTGGAACGGAGAAGAGAGATCTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTTCTCCGGCCTTTGGATTACTCTaGCTGTCACGAAGGAGGAAC +
Preference number: 4 (lower is better)
Translates to: PWVGVGVCSHPHADLSSPAFGLL*LSRRRN
Trigger: GTTCCTCCTTCGTGACAGCCAGAGTAATCCAAAGGC...CGGAGAAGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp CTTCAACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTACAGGGGCCGCACCAGTaGGCTCCGGAAATGGGTTGG +
Preference number: 4 (lower is better)
Translates to: LQQFTSAREVQSSTSNQLQGPHQ*APEMGW
Trigger: CCAACCCATTTCCGGAGCTCACTGGTGCGGCCCCTG...TAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTTGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp TGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTACTGCTGGCACCAATTaGCCATCTGATCCGGGAAGA +
Preference number: 4 (lower is better)
Translates to: CSESLGGSRCVFSPSCRSTAGTN*PSDPGR
Trigger: TCTTCCCGGATCAGATGGTCAATTGGTGCCAGCAGT...AGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTCCTACCTCTTTCACCTaGAAGAACCCCTGGATCTCA +
Preference number: 4 (lower is better)
Translates to: LSPWVGVGVCSHPHADLSPTSFT*KNPWIS
Trigger: TGAGATCCAGGGGTTCTTGCAGGTGAAAGAGGTAGG...AGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp GGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGCAGAGGGAGGTGGTCCTGTCAGGTAGAAGATGCTaGTTTCTTCCAGGTCAGCCA +
Preference number: 4 (lower is better)
Translates to: GSLPSPNFKWLTQREVVLSGRRC*FLPGQP
Trigger: TGGCTGACCTGGAAGAAAGCAGCATCTTCTACCTGA...CAGGACCACCTCCCTCTGCGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp GTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTTCAGGGTAGAAGGATaGAGTGGGCTTTGGCTGCTT +
Preference number: 4 (lower is better)
Translates to: VLSPWVGVGVCSHPHADLFRVEG*SGLWLL
Trigger: AAGCAGCCAAAGCCCACTGCATCCTTCTACCCTGAA...GAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CTGTCAACCATGGCAAATCAGAAGTGGCTCCCTGGGGAGCACTTCAATGAGTCGAAGACTTTGACATCATaGTTGGCAGGTGGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: LSTMANQKWLPGEHFNESKTLTS*LAGGWL
Trigger: GAGCCAGCCACCTGCCAAGCATGATGTCAAAGTCTT...CGACTCATTGAAGTGCTCCCCAGGGAGCCACTTCTGATTTGCCATGGTTGACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp AAAAGCCATGTTGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTGCTGGCACAGGTCCCTaGCTGTCATGTCGGTTAGAA +
Preference number: 4 (lower is better)
Translates to: KSHVVLSPWVGVGVCSHPAGTGP*LSCRLE
Trigger: TTCTAACCGACATGACAGCCAGGGACCTGTGCCAGC...AGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACAACATGGCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTATGGTACTCTCCACTTaGACCACGATCTCATGGTCC +
Preference number: 4 (lower is better)
Translates to: LSPWVGVGVCSHPHADLSMVLST*TTISWS
Trigger: GGACCATGAGATCGTGGTCCAAGTGGAGAGTACCAT...AGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTTGCTCTCACTTGGCATaGTACTCTCCACTTGGACCA +
Preference number: 4 (lower is better)
Translates to: LSPWVGVGVCSHPHADLSCSHLA*YSPLGP
Trigger: TGGTCCAAGTGGAGAGTACCATGCCAAGTGAGAGCA...AGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp TCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCGCCTTTGGATTACTCTaGCTGTCACGAAGGAGGAAC +
Preference number: 4 (lower is better)
Translates to: SESLGGSRCVFSPSCRSLAFGLL*LSRRRN
Trigger: GTTCCTCCTTCGTGACAGCCAGAGTAATCCAAAGGC...GAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CTGTCAACCATGGCAAATCAGAAGTGGCTCCCTGGGGAGCACTTCAATGAGTCGCAGTACGAACGCCTTTaGATTACTCTGGCTGTCACG +
Preference number: 4 (lower is better)
Translates to: LSTMANQKWLPGEHFNESQYERL*ITLAVT
Trigger: CGTGACAGCCAGAGTAATCCAAAGGCGTTCGTACTG...CGACTCATTGAAGTGCTCCCCAGGGAGCCACTTCTGATTTGCCATGGTTGACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp ACTGGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGCAGAGGGAGGTGGTCCAGTACGAACGCCTTTaGATTACTCTGGCTGTCACG +
Preference number: 4 (lower is better)
Translates to: TGSLPSPNFKWLTQREVVQYERL*ITLAVT
Trigger: CGTGACAGCCAGAGTAATCCAAAGGCGTTCGTACTG...GACCACCTCCCTCTGCGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp CTGCATTCCCTGAAAACGGTTACATGTCAGGTCATTTTACCGGTCACTGCAGTTTGCTGGTCTTCCTCCTaGAGGCGCCTGAGAATGTGC +
Preference number: 4 (lower is better)
Translates to: LHSLKTVTCQVILPVTAVCWSSS*RRLRMC
Trigger: GCACATTCTCAGGCGCCTTCAGGAGGAAGACCAGCA...AACTGCAGTGACCGGTAAAATGACCTGACATGTAACCGTTTTCAGGGAATGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp CCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTTCTCCGTCGCTTTGTTTGGCTTaGTGCACATCCCATGTTCAT +
Preference number: 4 (lower is better)
Translates to: PWVGVGVCSHPHADLSSPSLCLA*CTSHVH
Trigger: ATGAACATGGGATGTGCATCAAGCCAAACAAAGCGA...CGGAGAAGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp TCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCAGTGGTGTTTCAGCTTaGAGGGCAGAACACCTTTGT +
Preference number: 4 (lower is better)
Translates to: SESLGGSRCVFSPSCRSLSGVSA*RAEHLC
Trigger: ACAAAGGTGTTCTGCCCTGCAAGCTGAAACACCACT...GAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CTGCATTCCCTGAAAACGGTTACATGTCAGGTCATTTTACCGGTCACTGCAGTTGCTCCGGAAATGGGTTaGGGATGGCCGGAAGAGATG +
Preference number: 4 (lower is better)
Translates to: LHSLKTVTCQVILPVTAVAPEMG*GWPEEM
Trigger: CATCTCTTCCGGCCATCCCCAACCCATTTCCGGAGC...AACTGCAGTGACCGGTAAAATGACCTGACATGTAACCGTTTTCAGGGAATGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CTTCAACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTATGCAGAAGCTGCGCCTaGCCACCGTTGGACTGCTGG +
Preference number: 4 (lower is better)
Translates to: LQQFTSAREVQSSTSNQLCRSCA*PPLDCW
Trigger: CCAGCAGTCCAACGGTGGCCAGGCGCAGCTTCTGCA...TAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp TCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTCTCAGGGCAGCTGCTaGTGTTCAGAAAATTCTGCA +
Preference number: 4 (lower is better)
Translates to: SESLGGSRCVFSPSCRSLSQGSC*CSENSA
Trigger: TGCAGAATTTTCTGAACACCAGCAGCTGCCCTGAGA...GAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CTGTCAACCATGGCAAATCAGAAGTGGCTCCCTGGGGAGCACTTCAATGAGTCGTCTCAGGGCAGCTGCTaGTGTTCAGAAAATTCTGCA +
Preference number: 4 (lower is better)
Translates to: LSTMANQKWLPGEHFNESSQGSC*CSENSA
Trigger: TGCAGAATTTTCTGAACACCAGCAGCTGCCCTGAGA...CGACTCATTGAAGTGCTCCCCAGGGAGCCACTTCTGATTTGCCATGGTTGACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp ACTGGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGCAGAGGGAGGTGGTCTTGAAGTCCCCTTGGTaGAGTAATAGAGGCCAGATC +
Preference number: 4 (lower is better)
Translates to: TGSLPSPNFKWLTQREVVLKSPW*SNRGQI
Trigger: GATCTGGCCTCTATTACTCCACCAAGGGGACTTCAA...GACCACCTCCCTCTGCGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CTGTCAACCATGGCAAATCAGAAGTGGCTCCCTGGGGAGCACTTCAATGAGTCGTTGAAGTCCCCTTGGTaGAGTAATAGAGGCCAGATC +
Preference number: 4 (lower is better)
Translates to: LSTMANQKWLPGEHFNESLKSPW*SNRGQI
Trigger: GATCTGGCCTCTATTACTCCACCAAGGGGACTTCAA...CGACTCATTGAAGTGCTCCCCAGGGAGCCACTTCTGATTTGCCATGGTTGACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CATGTTGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGCCTTTGGATTACTCTaGCTGTCACGAAGGAGGAAC +
Preference number: 4 (lower is better)
Translates to: HVVLSPWVGVGVCSHPHAAFGLL*LSRRRN
Trigger: GTTCCTCCTTCGTGACAGCCAGAGTAATCCAAAGGC...TGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACAACATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp TGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTTCTCCGTTCTCAGATCGGAGAACTTaGTGTTCCCATCATCCAGAG +
Preference number: 4 (lower is better)
Translates to: WVGVGVCSHPHADLSSPFSDRRT*CSHHPE
Trigger: CTCTGGATGATGGGAACACCAAGTTCTCCGATCTGA...GAACGGAGAAGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp TGTCTGCTACTCTCATGCCTGATAAATCATCAAGGGGACAACAGAGGGTCCTTCGTGAGTTTCGACAGCTaGAAGCCTGGAGGGAAATGC +
Preference number: 4 (lower is better)
Translates to: CLLLSCLINHQGDNRGSFVSFDS*KPGGKC
Trigger: GCATTTCCCTCCAGGCTTTCAGCTGTCGAAACTCAC...GAAGGACCCTCTGTTGTCCCCTTGATGATTTATCAGGCATGAGAGTAGCAGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093321.12
CDS-3UTR GCA 90 bp AAAAGCCATGTTGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTTTCAGGGTAGAAGGATaGAGTGGGCTTTGGCTGCTT +
Preference number: 4 (lower is better)
Translates to: KSHVVLSPWVGVGVCSHPFRVEG*SGLWLL
Trigger: AAGCAGCCAAAGCCCACTGCATCCTTCTACCCTGAA...AGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACAACATGGCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CTGTCAACCATGGCAAATCAGAAGTGGCTCCCTGGGGAGCACTTCAATGAGTCGAGTCCTGTGAATCACTaGATTCAGGGTAGAAGGATG +
Preference number: 4 (lower is better)
Translates to: LSTMANQKWLPGEHFNESSPVNH*IQGRRM
Trigger: CATCCTTCTACCCTGAATGCAGTGATTCACAGGACT...CGACTCATTGAAGTGCTCCCCAGGGAGCCACTTCTGATTTGCCATGGTTGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CCGATCAAAAAGCCATGTTGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCATGGTACTCTCCACTTaGACCACGATCTCATGGTCC +
Preference number: 4 (lower is better)
Translates to: PIKKPCCSESLGGSRCVFMVLST*TTISWS
Trigger: GGACCATGAGATCGTGGTCCAAGTGGAGAGTACCAT...GAACACACACCTACTCCCACCCAAGGACTCAGAACAACATGGCTTTTTGATCGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp TGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTTCTCCGTTCGAATTTGCTCTCACTTaGCATGGTACTCTCCACTTG +
Preference number: 4 (lower is better)
Translates to: WVGVGVCSHPHADLSSPFEFALT*HGTLHL
Trigger: CAAGTGGAGAGTACCATGCCAAGTGAGAGCAAATTC...GAACGGAGAAGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CCCTCATGCAGATCTCTCTTCTCCGTTCCAGTGTCGCTGCCTCCAGCCTCTGTGTCGCAAGGTAAGATCTaGAAGTTTTTAATCTTCTGG +
Preference number: 4 (lower is better)
Translates to: PSCRSLFSVPVSLPPASVSQGKI*KFLIFW
Trigger: CCAGAAGATTAAAAACTTCCAGATCTTACCTTGCGA...CACAGAGGCTGGAGGCAGCGACACTGGAACGGAGAAGAGAGATCTGCATGAGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
3UTR CAA 72 bp TTGGTACCGATCAAAAAGCCATGTTGTTCTGAGTCCTaGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGC +
Preference number: 4 (lower is better)
Translates to: LVPIKKPCCSES*GGSRCVFSPSC
Trigger: GCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACAACATGGCTTTTTGATCGGTACCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
3UTR CAA 72 bp TCTGTGAACTACAGTGTTTCTCTACTGTGGGCCAGCTaGCCACTGGCCTGCTTTACAAAGCGCTGTCATATC +
Preference number: 4 (lower is better)
Translates to: SVNYSVSLLWAS*PLACFTKRCHI
Trigger: GATATGACAGCGCTTTGTAAAGCAGGCCAGTGGCAAGCTGGCCCACAGTAGAGAAACACTGTAGTTCACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp CATGTTGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCATCGCTTTGTTTGGCTTaGTGCACATCCCATGTTCAT +
Preference number: 4 (lower is better)
Translates to: HVVLSPWVGVGVCSHPHASLCLA*CTSHVH
Trigger: ATGAACATGGGATGTGCATCAAGCCAAACAAAGCGA...TGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACAACATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTATCCTCAAGAAGTGGTaGAGTATCAGTATCAGACTG +
Preference number: 4 (lower is better)
Translates to: LSPWVGVGVCSHPHADLSILKKW*SISIRL
Trigger: CAGTCTGATACTGATACTGCACCACTTCTTGAGGAT...AGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp TGTCTGCTACTCTCATGCCTGATAAATCATCAAGGGGACAACAGAGGGTCCTTCAGAATGTGCACAGGCTaGGAGCGTTGCATTTTCTGC +
Preference number: 4 (lower is better)
Translates to: CLLLSCLINHQGDNRGSFRMCTG*ERCIFC
Trigger: GCAGAAAATGCAACGCTCGCAGCCTGTGCACATTCT...GAAGGACCCTCTGTTGTCCCCTTGATGATTTATCAGGCATGAGAGTAGCAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp ATCCTGTCTGCTACTCTCATGCCTGATAAATCATCAAGGGGACAACAGAGGGTCGTGTTCAGAAAATTCTaGAGAAGCTGCGCCTGGCCA +
Preference number: 4 (lower is better)
Translates to: ILSATLMPDKSSRGQQRVVFRKF*RSCAWP
Trigger: TGGCCAGGCGCAGCTTCTGCAGAATTTTCTGAACAC...GACCCTCTGTTGTCCCCTTGATGATTTATCAGGCATGAGAGTAGCAGACAGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp TGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCAATCAGGTAGAAGATaGTGCTTTCTTCCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: CSESLGGSRCVFSPSCRSQSGRR*CFLPGQ
Trigger: CTGACCTGGAAGAAAGCAGCATCTTCTACCTGATTG...AGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CTGCATTCCCTGAAAACGGTTACATGTCAGGTCATTTTACCGGTCACTGCAGTTATAAGGCCACGCGGATaGAGTGGTGTTTCAGCTTGC +
Preference number: 4 (lower is better)
Translates to: LHSLKTVTCQVILPVTAVIRPRG*SGVSAC
Trigger: GCAAGCTGAAACACCACTGCATCCGCGTGGCCTTAT...AACTGCAGTGACCGGTAAAATGACCTGACATGTAACCGTTTTCAGGGAATGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp TGTCTGCTACTCTCATGCCTGATAAATCATCAAGGGGACAACAGAGGGTCCTTCATGGTACTCTCCACTTaGACCACGATCTCATGGTCC +
Preference number: 4 (lower is better)
Translates to: CLLLSCLINHQGDNRGSFMVLST*TTISWS
Trigger: GGACCATGAGATCGTGGTCCAAGTGGAGAGTACCAT...GAAGGACCCTCTGTTGTCCCCTTGATGATTTATCAGGCATGAGAGTAGCAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp TCGCGGTTTGAATTGTCAAGGTTATTCCAGGGCAAGAGTTCATTTCCAATCATTTCCAGGGCAGCACTCTaGGCTTCAGCCGGGTTATCG +
Preference number: 4 (lower is better)
Translates to: SRFELSRLFQGKSSFPIISRAAL*ASAGLS
Trigger: CGATAACCCGGCTGAAGCCCAGAGTGCTGCCCTGGA...AATGATTGGAAATGAACTCTTGCCCTGGAATAACCTTGACAATTCAAACCGCGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp CCGATCAAAAAGCCATGTTGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCGCTTTGTTTGGCTTaGTGCACATCCCATGTTCAT +
Preference number: 4 (lower is better)
Translates to: PIKKPCCSESLGGSRCVFSLCLA*CTSHVH
Trigger: ATGAACATGGGATGTGCATCAAGCCAAACAAAGCGA...GAACACACACCTACTCCCACCCAAGGACTCAGAACAACATGGCTTTTTGATCGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CCGATCAAAAAGCCATGTTGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCAGTCCTGTGAATCACTaGATTCAGGGTAGAAGGATG +
Preference number: 4 (lower is better)
Translates to: PIKKPCCSESLGGSRCVFSPVNH*IQGRRM
Trigger: CATCCTTCTACCCTGAATGCAGTGATTCACAGGACT...GAACACACACCTACTCCCACCCAAGGACTCAGAACAACATGGCTTTTTGATCGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp GGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGCAGAGGGAGGTGGTCCTGTCGCAAGGTAAGATCTaGAAGTTTTTAATCTTCTGG +
Preference number: 4 (lower is better)
Translates to: GSLPSPNFKWLTQREVVLSQGKI*KFLIFW
Trigger: CCAGAAGATTAAAAACTTCCAGATCTTACCTTGCGA...CAGGACCACCTCCCTCTGCGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp ATCCTGTCTGCTACTCTCATGCCTGATAAATCATCAAGGGGACAACAGAGGGTCTCAGATCGGAGAACTTaGTGTTCCCATCATCCAGAG +
Preference number: 4 (lower is better)
Translates to: ILSATLMPDKSSRGQQRVSDRRT*CSHHPE
Trigger: CTCTGGATGATGGGAACACCAAGTTCTCCGATCTGA...GACCCTCTGTTGTCCCCTTGATGATTTATCAGGCATGAGAGTAGCAGACAGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp TGTCTGCTACTCTCATGCCTGATAAATCATCAAGGGGACAACAGAGGGTCCTTCTCAGATCGGAGAACTTaGTGTTCCCATCATCCAGAG +
Preference number: 4 (lower is better)
Translates to: CLLLSCLINHQGDNRGSFSDRRT*CSHHPE
Trigger: CTCTGGATGATGGGAACACCAAGTTCTCCGATCTGA...GAAGGACCCTCTGTTGTCCCCTTGATGATTTATCAGGCATGAGAGTAGCAGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp CTTCAACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTAACTGCTGGCACCAATTaGCCATCTGATCCGGGAAGA +
Preference number: 4 (lower is better)
Translates to: LQQFTSAREVQSSTSNQLTAGTN*PSDPGR
Trigger: TCTTCCCGGATCAGATGGTCAATTGGTGCCAGCAGT...TAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTTGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp TCTTCCCACACTTGCACTGGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGTTTTTAATCTTCTGGTaGTGGCACAGTGTCAGTACG +
Preference number: 4 (lower is better)
Translates to: SSHTCTGSLPSPNFKWLTFLIFW*WHSVST
Trigger: CGTACTGACACTGTGCCATCACCAGAAGATTAAAAA...CGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGTGCAAGTGTGGGAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CCGATCAAAAAGCCATGTTGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCATCCTCAAGAAGTGGTaGAGTATCAGTATCAGACTG +
Preference number: 4 (lower is better)
Translates to: PIKKPCCSESLGGSRCVFILKKW*SISIRL
Trigger: CAGTCTGATACTGATACTGCACCACTTCTTGAGGAT...GAACACACACCTACTCCCACCCAAGGACTCAGAACAACATGGCTTTTTGATCGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CTGCATTCCCTGAAAACGGTTACATGTCAGGTCATTTTACCGGTCACTGCAGTTTCAGGTAGAAGATGCTaGTTTCTTCCAGGTCAGCCA +
Preference number: 4 (lower is better)
Translates to: LHSLKTVTCQVILPVTAVSGRRC*FLPGQP
Trigger: TGGCTGACCTGGAAGAAAGCAGCATCTTCTACCTGA...AACTGCAGTGACCGGTAAAATGACCTGACATGTAACCGTTTTCAGGGAATGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp ATCCTGTCTGCTACTCTCATGCCTGATAAATCATCAAGGGGACAACAGAGGGTCCAATCAGGTAGAAGATaGTGCTTTCTTCCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: ILSATLMPDKSSRGQQRVQSGRR*CFLPGQ
Trigger: CTGACCTGGAAGAAAGCAGCATCTTCTACCTGATTG...GACCCTCTGTTGTCCCCTTGATGATTTATCAGGCATGAGAGTAGCAGACAGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp TGTCTGCTACTCTCATGCCTGATAAATCATCAAGGGGACAACAGAGGGTCCTTCCAATCAGGTAGAAGATaGTGCTTTCTTCCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: CLLLSCLINHQGDNRGSFQSGRR*CFLPGQ
Trigger: CTGACCTGGAAGAAAGCAGCATCTTCTACCTGATTG...GAAGGACCCTCTGTTGTCCCCTTGATGATTTATCAGGCATGAGAGTAGCAGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CGCGGTTTGAATTGTCAAGGTTATTCCAGGGCAAGAGTTCATTTCCAATCATTTCGACAGCTGAAAGCCTaGAGGGAAATGCTTGGCAGG +
Preference number: 4 (lower is better)
Translates to: RGLNCQGYSRARVHFQSFRQLKA*REMLGR
Trigger: CCTGCCAAGCATTTCCCTCCAGGCTTTCAGCTGTCG...AAATGATTGGAAATGAACTCTTGCCCTGGAATAACCTTGACAATTCAAACCGCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
CDS-3UTR CCA 90 bp TCGCGGTTTGAATTGTCAAGGTTATTCCAGGGCAAGAGTTCATTTCCAATCATTTGGACCACGATCTCATaGTCCTCCAGGCACCTCTCT +
Preference number: 4 (lower is better)
Translates to: SRFELSRLFQGKSSFPIIWTTIS*SSRHLS
Trigger: AGAGAGGTGCCTGGAGGACCATGAGATCGTGGTCCA...AATGATTGGAAATGAACTCTTGCCCTGGAATAACCTTGACAATTCAAACCGCGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp TGTCTGCTACTCTCATGCCTGATAAATCATCAAGGGGACAACAGAGGGTCCTTCGAATTTGCTCTCACTTaGCATGGTACTCTCCACTTG +
Preference number: 4 (lower is better)
Translates to: CLLLSCLINHQGDNRGSFEFALT*HGTLHL
Trigger: CAAGTGGAGAGTACCATGCCAAGTGAGAGCAAATTC...GAAGGACCCTCTGTTGTCCCCTTGATGATTTATCAGGCATGAGAGTAGCAGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp TCTGACCTTAAGTCAGCAAAAAGAAATGAGCACGGTAAAACTGAAATGTCTGTTTCCAGGGCAGCACTCTaGGCTTCAGCCGGGTTATCG +
Preference number: 4 (lower is better)
Translates to: SDLKSAKRNEHGKTEMSVSRAAL*ASAGLS
Trigger: CGATAACCCGGCTGAAGCCCAGAGTGCTGCCCTGGA...AACAGACATTTCAGTTTTACCGTGCTCATTTCTTTTTGCTGACTTAAGGTCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
3UTR CAA 72 bp GGGTGGTATCAAGAAAGGGAAATGTGTTCACCACCGTaGTTGTCTGTGTGTTTCTCAAGGCAATCCTGTCTG +
Preference number: 4 (lower is better)
Translates to: GWYQEREMCSPP*LSVCFSRQSCL
Trigger: CAGACAGGATTGCCTTGAGAAACACACAGACAACAACGGTGGTGAACACATTTCCCTTTCTTGATACCACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp TTGTCTGTGTGTTTCTCAAGGCAATCCTGTCTGCTACTCTCATGCCTGATAAATAGAATGTGCACAGGCTaGGAGCGTTGCATTTTCTGC +
Preference number: 4 (lower is better)
Translates to: LSVCFSRQSCLLLSCLINRMCTG*ERCIFC
Trigger: GCAGAAAATGCAACGCTCGCAGCCTGTGCACATTCT...ATTTATCAGGCATGAGAGTAGCAGACAGGATTGCCTTGAGAAACACACAGACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CTTCAACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTAAGAGTGAAGAAGGTCTaGCCATCATCCTCGCAAGGT +
Preference number: 4 (lower is better)
Translates to: LQQFTSAREVQSSTSNQLRVKKV*PSSSQG
Trigger: ACCTTGCGAGGATGATGGGCAGACCTTCTTCACTCT...TAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTTGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp TCGCGGTTTGAATTGTCAAGGTTATTCCAGGGCAAGAGTTCATTTCCAATCATTTCTCCATCTGTGAAGTaGGCATCCGTGCCACTGGAT +
Preference number: 4 (lower is better)
Translates to: SRFELSRLFQGKSSFPIISPSVK*ASVPLD
Trigger: ATCCAGTGGCACGGATGCCCACTTCACAGATGGAGA...AATGATTGGAAATGAACTCTTGCCCTGGAATAACCTTGACAATTCAAACCGCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
CDS-3UTR CCA 90 bp TCTGACCTTAAGTCAGCAAAAAGAAATGAGCACGGTAAAACTGAAATGTCTGTTACCTGCAAGAACCCCTaGATCTCAGGGCAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: SDLKSAKRNEHGKTEMSVTCKNP*ISGQLL
Trigger: CAGCAGCTGCCCTGAGATCCAGGGGTTCTTGCAGGT...AACAGACATTTCAGTTTTACCGTGCTCATTTCTTTTTGCTGACTTAAGGTCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CTTCAACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTACAGTACGAACGCCTTTaGATTACTCTGGCTGTCACG +
Preference number: 4 (lower is better)
Translates to: LQQFTSAREVQSSTSNQLQYERL*ITLAVT
Trigger: CGTGACAGCCAGAGTAATCCAAAGGCGTTCGTACTG...TAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTTGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp TGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTTCGCAAGGTAAGATCTaGAAGTTTTTAATCTTCTGG +
Preference number: 4 (lower is better)
Translates to: CSESLGGSRCVFSPSCRSSQGKI*KFLIFW
Trigger: CCAGAAGATTAAAAACTTCCAGATCTTACCTTGCGA...AGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp TCTGACCTTAAGTCAGCAAAAAGAAATGAGCACGGTAAAACTGAAATGTCTGTTAAATTCTGCAGAAGCTaGGCCTGGCCACCGTTGGAC +
Preference number: 4 (lower is better)
Translates to: SDLKSAKRNEHGKTEMSVKFCRS*AWPPLD
Trigger: GTCCAACGGTGGCCAGGCGCAGCTTCTGCAGAATTT...AACAGACATTTCAGTTTTACCGTGCTCATTTCTTTTTGCTGACTTAAGGTCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CGCGGTTTGAATTGTCAAGGTTATTCCAGGGCAAGAGTTCATTTCCAATCATTTGTGTTCAGAAAATTCTaGAGAAGCTGCGCCTGGCCA +
Preference number: 4 (lower is better)
Translates to: RGLNCQGYSRARVHFQSFVFRKF*RSCAWP
Trigger: TGGCCAGGCGCAGCTTCTGCAGAATTTTCTGAACAC...AAATGATTGGAAATGAACTCTTGCCCTGGAATAACCTTGACAATTCAAACCGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CTTCAACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTAGCTTCTTCCAAGACTTaGGTCCTACCTCTTTCACCT +
Preference number: 4 (lower is better)
Translates to: LQQFTSAREVQSSTSNQLASSKT*VLPLSP
Trigger: AGGTGAAAGAGGTAGGACGCAAGTCTTGGAAGAAGC...TAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTTGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CGCGGTTTGAATTGTCAAGGTTATTCCAGGGCAAGAGTTCATTTCCAATCATTTGCTTCTTCCAAGACTTaGGTCCTACCTCTTTCACCT +
Preference number: 4 (lower is better)
Translates to: RGLNCQGYSRARVHFQSFASSKT*VLPLSP
Trigger: AGGTGAAAGAGGTAGGACGCAAGTCTTGGAAGAAGC...AAATGATTGGAAATGAACTCTTGCCCTGGAATAACCTTGACAATTCAAACCGCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp TTGTCTGTGTGTTTCTCAAGGCAATCCTGTCTGCTACTCTCATGCCTGATAAATAGTCCTGTGAATCACTaGATTCAGGGTAGAAGGATG +
Preference number: 4 (lower is better)
Translates to: LSVCFSRQSCLLLSCLINSPVNH*IQGRRM
Trigger: CATCCTTCTACCCTGAATGCAGTGATTCACAGGACT...ATTTATCAGGCATGAGAGTAGCAGACAGGATTGCCTTGAGAAACACACAGACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp TTGTCTGTGTGTTTCTCAAGGCAATCCTGTCTGCTACTCTCATGCCTGATAAATTTTTTAATCTTCTGGTaGTGGCACAGTGTCAGTACG +
Preference number: 4 (lower is better)
Translates to: LSVCFSRQSCLLLSCLINFLIFW*WHSVST
Trigger: CGTACTGACACTGTGCCATCACCAGAAGATTAAAAA...ATTTATCAGGCATGAGAGTAGCAGACAGGATTGCCTTGAGAAACACACAGACAA
42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CTTCAACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTAATCCTCAAGAAGTGGTaGAGTATCAGTATCAGACTG +
Preference number: 4 (lower is better)
Translates to: LQQFTSAREVQSSTSNQLILKKW*SISIRL
Trigger: CAGTCTGATACTGATACTGCACCACTTCTTGAGGAT...TAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTTGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CGGTTTGAATTGTCAAGGTTATTCCAGGGCAAGAGTTCATTTCCAATCATTTTTAATAGAGGCCAGATCTaGGCAGGCACACATACAGCT +
Preference number: 4 (lower is better)
Translates to: RFELSRLFQGKSSFPIIFNRGQI*AGTHTA
Trigger: AGCTGTATGTGTGCCTGCGCAGATCTGGCCTCTATT...AAAAATGATTGGAAATGAACTCTTGCCCTGGAATAACCTTGACAATTCAAACCG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CTTCAACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTAGTCCAGAAAAATCCATaGCCACAAGAGAATTCTCAG +
Preference number: 4 (lower is better)
Translates to: LQQFTSAREVQSSTSNQLVQKNP*PQENSQ
Trigger: CTGAGAATTCTCTTGTGGCCATGGATTTTTCTGGAC...TAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTTGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR TCA 90 bp CGCGGTTTGAATTGTCAAGGTTATTCCAGGGCAAGAGTTCATTTCCAATCATTTTTTTTAATCTTCTGGTaGTGGCACAGTGTCAGTACG +
Preference number: 4 (lower is better)
Translates to: RGLNCQGYSRARVHFQSFFLIFW*WHSVST
Trigger: CGTACTGACACTGTGCCATCACCAGAAGATTAAAAA...AAATGATTGGAAATGAACTCTTGCCCTGGAATAACCTTGACAATTCAAACCGCG
41% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR GCA 90 bp CGGTTTGAATTGTCAAGGTTATTCCAGGGCAAGAGTTCATTTCCAATCATTTTTAGTGGTGTTTCAGCTTaGAGGGCAGAACACCTTTGT +
Preference number: 4 (lower is better)
Translates to: RFELSRLFQGKSSFPIIFSGVSA*RAEHLC
Trigger: ACAAAGGTGTTCTGCCCTGCAAGCTGAAACACCACT...AAAAATGATTGGAAATGAACTCTTGCCCTGGAATAACCTTGACAATTCAAACCG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp TCGCGGTTTGAATTGTCAAGGTTATTCCAGGGCAAGAGTTCATTTCCAATCATTGTCCAGAAAAATCCATaGCCACAAGAGAATTCTCAG +
Preference number: 4 (lower is better)
Translates to: SRFELSRLFQGKSSFPIIVQKNP*PQENSQ
Trigger: CTGAGAATTCTCTTGTGGCCATGGATTTTTCTGGAC...AATGATTGGAAATGAACTCTTGCCCTGGAATAACCTTGACAATTCAAACCGCGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
3UTR CAA 72 bp ACCGGTCTGTGTAAACTGGAAAAAGAAACCCTAGGGTaGTTTGTTGTCTGTAAAAGTTCTGACCTTAAGTCA +
Preference number: 4 (lower is better)
Translates to: TGLCKLEKETLG*FVVCKSSDLKS
Trigger: TGACTTAAGGTCAGAACTTTTACAGACAACAAACAACCCTAGGGTTTCTTTTTCCAGTTTACACAGACCGGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CCA 90 bp CGGTTTGAATTGTCAAGGTTATTCCAGGGCAAGAGTTCATTTCCAATCATTTTTGTCCAGAAAAATCCATaGCCACAAGAGAATTCTCAG +
Preference number: 4 (lower is better)
Translates to: RFELSRLFQGKSSFPIIFVQKNP*PQENSQ
Trigger: CTGAGAATTCTCTTGTGGCCATGGATTTTTCTGGAC...AAAAATGATTGGAAATGAACTCTTGCCCTGGAATAACCTTGACAATTCAAACCG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS GCA 90 bp CTGCTTTCTTCCAGGTCAGCCAGCAGCTGCAGGTGTCTGGGTTCCTaGAGAAGCTGCGCCTGGCCACCGTTGGACTGCTGGCACCAATTG +
Preference number: 5 (lower is better)
Translates to: LLSSRSASSCRCLGS*RSCAWPPLDCWHQL
Trigger: CAATTGGTGCCAGCAGTCCAACGGTGGCCAGGCGCAGCTTCTGCAGGAACCCAGACACCTGCAGCTGCTGGCTGACCTGGAAGAAAGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109653.8
CDS CCA 90 bp AGAAGATGCTGCTTTCTTCCAGGTCAGCCAGCAGCTGCAGGTGTCTaGGTTCCTGCAGAAGCTGCGCCTGGCCACCGTTGGACTGCTGGC +
Preference number: 5 (lower is better)
Translates to: RRCCFLPGQPAAAGV*VPAEAAPGHRWTAG
Trigger: GCCAGCAGTCCAACGGTGGCCAGGCGCAGCTTCTGCAGGAACCCAGACACCTGCAGCTGCTGGCTGACCTGGAAGAAAGCAGCATCTTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109653.8
CDS-3UTR CAA 90 bp TGCAGATCTCTCTTCTCCGTTCCAGTGTCGCTGCCTCCAGCCTCTGTGAGTGGGCTGCGCATAGGTGCGTaGAAAGGAGGGGGCAGACCC +
Preference number: 5 (lower is better)
Translates to: CRSLFSVPVSLPPASVSGLRIGA*KGGGRP
Trigger: GGGTCTGCCCCCTCCTTTCAACGCACCTATGCGCAG...CCCACTCACAGAGGCTGGAGGCAGCGACACTGGAACGGAGAAGAGAGATCTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp AGGCTGGCTGACATCAGTCTGAAGCTGAGGTCATGCAGCTGTGCTGTGCTGGGGCACAGGCTGCGAGCGTaGCATTTTCTGCCTCGGGGA +
Preference number: 5 (lower is better)
Translates to: RLADISLKLRSCSCAVLGHRLRA*HFLPRG
Trigger: TCCCCGAGGCAGAAAATGCAACGCTCGCAGCCTGTG...CCCCAGCACAGCACAGCTGCATGACCTCAGCTTCAGACTGATGTCAGCCAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp GGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGCAGAGGGAGGTGGTCCTGGATGCTGCTCCCTGGTaGCTGGCATGCTGGCCATCC +
Preference number: 5 (lower is better)
Translates to: GSLPSPNFKWLTQREVVLDAAPW*LACWPS
Trigger: GGATGGCCAGCATGCCAGCAACCAGGGAGCAGCATC...CAGGACCACCTCCCTCTGCGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp GTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCCCTGGAGGGAAATGCTaGGCAGGTGGCTGGCTCGGA +
Preference number: 5 (lower is better)
Translates to: VLSPWVGVGVCSHPHADLPGGKC*AGGWLG
Trigger: TCCGAGCCAGCCACCTGCCAAGCATTTCCCTCCAGG...GAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
CDS GCA 90 bp GTCCTACCTCTTTCACCTGCAAGAACCCCTGGATCTCAGGGCAGCTaGTGGTGTTCAGAAAATTCTGCAGAAGCTGCGCCTGGCCACCGT +
Preference number: 5 (lower is better)
Translates to: VLPLSPARTPGSQGS*WCSENSAEAAPGHR
Trigger: ACGGTGGCCAGGCGCAGCTTCTGCAGAATTTTCTGAACACCAGCAGCTGCCCTGAGATCCAGGGGTTCTTGCAGGTGAAAGAGGTAGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp TGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTGATGCTGCTCCCTGGTaGCTGGCATGCTGGCCATCC +
Preference number: 5 (lower is better)
Translates to: CSESLGGSRCVFSPSCRSDAAPW*LACWPS
Trigger: GGATGGCCAGCATGCCAGCAACCAGGGAGCAGCATC...AGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp CCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTTCTCCGAGCTCCGGAAATGGGTaGGGGATGGCCGGAAGAGAT +
Preference number: 5 (lower is better)
Translates to: PWVGVGVCSHPHADLSSPSSGNG*GMAGRD
Trigger: ATCTCTTCCGGCCATCCCCAACCCATTTCCGGAGCT...CGGAGAAGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS CCA 90 bp GTCCCATCTTCACTAAAGACTTTGACATCATGCTTGGCAGGTGGCTaGCTCGGAGGAGGAGGTAAGGAGCTAGGAGCAACCGAAGGAGGG +
Preference number: 5 (lower is better)
Translates to: VPSSLKTLTSCLAGG*LGGGGKELGATEGG
Trigger: CCCTCCTTCGGTTGCTCCTAGCTCCTTACCTCCTCCTCCGAGCCAGCCACCTGCCAAGCATGATGTCAAAGTCTTTAGTGAAGATGGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp CTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTAGCTCCGGAAATGGGTaGGGGATGGCCGGAAGAGAT +
Preference number: 5 (lower is better)
Translates to: LSPWVGVGVCSHPHADLSSSGNG*GMAGRD
Trigger: ATCTCTTCCGGCCATCCCCAACCCATTTCCGGAGCT...AGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp AAAAGCCATGTTGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCCTGGAGGGAAATGCTaGGCAGGTGGCTGGCTCGGA +
Preference number: 5 (lower is better)
Translates to: KSHVVLSPWVGVGVCSHPPGGKC*AGGWLG
Trigger: TCCGAGCCAGCCACCTGCCAAGCATTTCCCTCCAGG...AGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACAACATGGCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
CDS-3UTR CAA 90 bp AGGCTGGCTGACATCAGTCTGAAGCTGAGGTCATGCAGCTGTGCTGTGCTGGGGTCAGTACGAACGCCTTaGGATTACTCTGGCTGTCAC +
Preference number: 5 (lower is better)
Translates to: RLADISLKLRSCSCAVLGSVRTP*DYSGCH
Trigger: GTGACAGCCAGAGTAATCCAAAGGCGTTCGTACTGA...CCCCAGCACAGCACAGCTGCATGACCTCAGCTTCAGACTGATGTCAGCCAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS TCA 90 bp CGCGGATGCAGTGGTGTTTCAGCTTGCAGGGCAGAACACCTTTGTTaGGCTGGTAGAAGTCGACCAGCTGGATCAGATCGGAGAACTTGG +
Preference number: 5 (lower is better)
Translates to: RGCSGVSACRAEHLC*AGRSRPAGSDRRTW
Trigger: CCAAGTTCTCCGATCTGATCCAGCTGGTCGACTTCTACCAGCTCAACAAAGGTGTTCTGCCCTGCAAGCTGAAACACCACTGCATCCGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS GCA 90 bp CCGTACTTGAGCAGTCTGAAGGCAGTCATCCAGCAAGTACGGATCTaGTCATCTTCGGCACAGAGCAGACGAAGCTCCTTCATCTCGGTC +
Preference number: 5 (lower is better)
Translates to: PYLSSLKAVIQQVRI*SSSAQSRRSSFISV
Trigger: GACCGAGATGAAGGAGCTTCGTCTGCTCTGTGCCGAAGATGAGCAGATCCGTACTTGCTGGATGACTGCCTTCAGACTGCTCAAGTACGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS GCA 90 bp TCGGCGCGTTGTACTGCTTCTTTCCAGCAATCAGGTAGAAGATGCTaGTTTCTTCCAGGTCAGCCAGCAGCTGCAGGTGTCTGGGTTCCT +
Preference number: 5 (lower is better)
Translates to: SARCTASFQQSGRRC*FLPGQPAAAGVWVP
Trigger: AGGAACCCAGACACCTGCAGCTGCTGGCTGACCTGGAAGAAAGCAGCATCTTCTACCTGATTGCTGGAAAGAAGCAGTACAACGCGCCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109653.8
CDS CCA 90 bp TTGCTCTCACTTGGCATGGTACTCTCCACTTGGACCACGATCTCATaGTCCTCCAGGCACCTCTCTAATCCCAGTTGTGGGTGGTGTTCC +
Preference number: 5 (lower is better)
Translates to: LLSLGMVLSTWTTIS*SSRHLSNPSCGWCS
Trigger: GGAACACCACCCACAACTGGGATTAGAGAGGTGCCTGGAGGACCATGAGATCGTGGTCCAAGTGGAGAGTACCATGCCAAGTGAGAGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS CCA 90 bp ACTGCGCATAGGTGCGTTGAAAGGAGGGGGCAGACCCTTCCTCTGTaGGATGCGATAGTTTTGGTACAGGAGCATTCCGTACTTGAGCAG +
Preference number: 5 (lower is better)
Translates to: TAHRCVERRGQTLPL*DAIVLVQEHSVLEQ
Trigger: CTGCTCAAGTACGGAATGCTCCTGTACCAAAACTATCGCATCCCACAGAGGAAGGGTCTGCCCCCTCCTTTCAACGCACCTATGCGCAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp AGGCTGGCTGACATCAGTCTGAAGCTGAGGTCATGCAGCTGTGCTGTGCTGGGGAGAATCTCCACCACTTaGCTGGTCCCATCTTCACTA +
Preference number: 5 (lower is better)
Translates to: RLADISLKLRSCSCAVLGRISTT*LVPSSL
Trigger: TAGTGAAGATGGGACCAGCAAAGTGGTGGAGATTCT...CCCCAGCACAGCACAGCTGCATGACCTCAGCTTCAGACTGATGTCAGCCAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp GTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCCCCGTCCACGAGACCTaGTTGCTTGATGATCCTGTG +
Preference number: 5 (lower is better)
Translates to: VLSPWVGVGVCSHPHADLPVHET*LLDDPV
Trigger: CACAGGATCATCAAGCAACAAGGTCTCGTGGACGGG...GAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp TGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTTCTCCGTTCCCCGTCCACGAGACCTaGTTGCTTGATGATCCTGTG +
Preference number: 5 (lower is better)
Translates to: WVGVGVCSHPHADLSSPFPVHET*LLDDPV
Trigger: CACAGGATCATCAAGCAACAAGGTCTCGTGGACGGG...GAACGGAGAAGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS GCA 90 bp TCGGCGCGTTGTACTGCTTCTTTCCAGCAATCAGGTAGAAGATGCTaGTTTCTTCCAGGTCAGCCAGCAGCTGCAGGTGTCTGGGTTCTT +
Preference number: 5 (lower is better)
Translates to: SARCTASFQQSGRRC*FLPGQPAAAGVWVL
Trigger: AAGAACCCAGACACCTGCAGCTGCTGGCTGACCTGGAAGAAAGCAGCATCTTCTACCTGATTGCTGGAAAGAAGCAGTACAACGCGCCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS GCA 90 bp CATTCGGCGCGTTGTACTGCTTCTTTCCAGCAATCAGGTAGAAGATaGTGCTTTCTTCCAGGTCAGCCAGCAGCTGCAGGTGTCTGGGTT +
Preference number: 5 (lower is better)
Translates to: HSARCTASFQQSGRR*CFLPGQPAAAGVWV
Trigger: AACCCAGACACCTGCAGCTGCTGGCTGACCTGGAAGAAAGCAGCATCTTCTACCTGATTGCTGGAAAGAAGCAGTACAACGCGCCGAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS GCA 90 bp TCCACCACTTTGCTGGTCCCATCTTCACTAAAGACTTTGACATCATaGTTGGCAGGTGGCTGGCTCGGAGGAGGAGGTAAGGAGCTAGGA +
Preference number: 5 (lower is better)
Translates to: STTLLVPSSLKTLTS*LAGGWLGGGGKELG
Trigger: TCCTAGCTCCTTACCTCCTCCTCCGAGCCAGCCACCTGCCAAGCATGATGTCAAAGTCTTTAGTGAAGATGGGACCAGCAAAGTGGTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp TGCAGATCTCTCTTCTCCGTTCCAGTGTCGCTGCCTCCAGCCTCTGTGAGTGGGGTATCAGACTGCATGTaGCAAGCTGAGTTAAGGCTT +
Preference number: 5 (lower is better)
Translates to: CRSLFSVPVSLPPASVSGVSDCM*QAELRL
Trigger: AAGCCTTAACTCAGCTTGCAACATGCAGTCTGATAC...CCCACTCACAGAGGCTGGAGGCAGCGACACTGGAACGGAGAAGAGAGATCTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp CTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTCATGGTACTCTCCACTaGGACCACGATCTCATGGTC +
Preference number: 5 (lower is better)
Translates to: LSPWVGVGVCSHPHADLSHGTLH*DHDLMV
Trigger: GACCATGAGATCGTGGTCCAAGTGGAGAGTACCATG...AGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp CTGTCAACCATGGCAAATCAGAAGTGGCTCCCTGGGGAGCACTTCAATGAGTCGCATGGTACTCTCCACTaGGACCACGATCTCATGGTC +
Preference number: 5 (lower is better)
Translates to: LSTMANQKWLPGEHFNESHGTLH*DHDLMV
Trigger: GACCATGAGATCGTGGTCCAAGTGGAGAGTACCATG...CGACTCATTGAAGTGCTCCCCAGGGAGCCACTTCTGATTTGCCATGGTTGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp CATGTTGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCACCCGTCCACGAGACCTaGTTGCTTGATGATCCTGTG +
Preference number: 5 (lower is better)
Translates to: HVVLSPWVGVGVCSHPHAPVHET*LLDDPV
Trigger: CACAGGATCATCAAGCAACAAGGTCTCGTGGACGGG...TGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACAACATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp CATGTTGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAACTTTGACATCATGCTaGGCAGGTGGCTGGCTCGGA +
Preference number: 5 (lower is better)
Translates to: HVVLSPWVGVGVCSHPHATLTSC*AGGWLG
Trigger: TCCGAGCCAGCCACCTGCCAAGCATGATGTCAAAGT...TGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACAACATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109654.8
CDS CCA 90 bp CATCCACACAGTGACTTTTGTAAACCAGCAGCTGGCACAGGTCCCTaGCTGTCATGTCGGTTAGAATCTCCACCACTTTGCTGGTCCCAT +
Preference number: 5 (lower is better)
Translates to: HPHSDFCKPAAGTGP*LSCRLESPPLCWSH
Trigger: ATGGGACCAGCAAAGTGGTGGAGATTCTAACCGACATGACAGCCAGGGACCTGTGCCAGCTGCTGGTTTACAAAAGTCACTGTGTGGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp CTGCATTCCCTGAAAACGGTTACATGTCAGGTCATTTTACCGGTCACTGCAGTTCACAGGCTGCGAGCGTaGCATTTTCTGCCTCGGGGA +
Preference number: 5 (lower is better)
Translates to: LHSLKTVTCQVILPVTAVHRLRA*HFLPRG
Trigger: TCCCCGAGGCAGAAAATGCAACGCTCGCAGCCTGTG...AACTGCAGTGACCGGTAAAATGACCTGACATGTAACCGTTTTCAGGGAATGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp CCCTCATGCAGATCTCTCTTCTCCGTTCCAGTGTCGCTGCCTCCAGCCTCTGTGTCTTCACTAAAGACTTaGACATCCTTTCTGAGCCTC +
Preference number: 5 (lower is better)
Translates to: PSCRSLFSVPVSLPPASVSSLKT*TSFLSL
Trigger: GAGGCTCAGAAAGGATGTCAAAGTCTTTAGTGAAGA...CACAGAGGCTGGAGGCAGCGACACTGGAACGGAGAAGAGAGATCTGCATGAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
CDS-3UTR CAA 90 bp TGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTTCTCCGTTCGTCCACGAGACCTTGTaGCTTGATGATCCTGTGAGA +
Preference number: 5 (lower is better)
Translates to: WVGVGVCSHPHADLSSPFVHETL*LDDPVR
Trigger: TCTCACAGGATCATCAAGCAACAAGGTCTCGTGGAC...GAACGGAGAAGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp CTGTCAACCATGGCAAATCAGAAGTGGCTCCCTGGGGAGCACTTCAATGAGTCGGTCCACGAGACCTTGTaGCTTGATGATCCTGTGAGA +
Preference number: 5 (lower is better)
Translates to: LSTMANQKWLPGEHFNESVHETL*LDDPVR
Trigger: TCTCACAGGATCATCAAGCAACAAGGTCTCGTGGAC...CGACTCATTGAAGTGCTCCCCAGGGAGCCACTTCTGATTTGCCATGGTTGACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS TCA 90 bp CCAGCTGGATCAGATCGGAGAACTTGGTGTTCCCATCATCCAGAGTaGAGAAGGTCTGCCCATCATCCTCGCAAGGTAAGATCTGGAAGT +
Preference number: 5 (lower is better)
Translates to: PAGSDRRTWCSHHPE*RRSAHHPRKVRSGS
Trigger: ACTTCCAGATCTTACCTTGCGAGGATGATGGGCAGACCTTCTTCACTCTGGATGATGGGAACACCAAGTTCTCCGATCTGATCCAGCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp ACTGGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGCAGAGGGAGGTGGTCAGAATCTCCACCACTTaGCTGGTCCCATCTTCACTA +
Preference number: 5 (lower is better)
Translates to: TGSLPSPNFKWLTQREVVRISTT*LVPSSL
Trigger: TAGTGAAGATGGGACCAGCAAAGTGGTGGAGATTCT...GACCACCTCCCTCTGCGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp CCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCTCTTCTCCGAGAATTTGCTCTCACTaGGCATGGTACTCTCCACTT +
Preference number: 5 (lower is better)
Translates to: PWVGVGVCSHPHADLSSPRICSH*AWYSPL
Trigger: AAGTGGAGAGTACCATGCCAAGTGAGAGCAAATTCT...CGGAGAAGAGAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp TTGTCTGTGTGTTTCTCAAGGCAATCCTGTCTGCTACTCTCATGCCTGATAAATCTGCGCATAGGTGCGTaGAAAGGAGGGGGCAGACCC +
Preference number: 5 (lower is better)
Translates to: LSVCFSRQSCLLLSCLINLRIGA*KGGGRP
Trigger: GGGTCTGCCCCCTCCTTTCAACGCACCTATGCGCAG...ATTTATCAGGCATGAGAGTAGCAGACAGGATTGCCTTGAGAAACACACAGACAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp GTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTCATGCAGATCTCGTATCAGACTGCATGTaGCAAGCTGAGTTAAGGCTT +
Preference number: 5 (lower is better)
Translates to: VLSPWVGVGVCSHPHADLVSDCM*QAELRL
Trigger: AAGCCTTAACTCAGCTTGCAACATGCAGTCTGATAC...GAGATCTGCATGAGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp TGTCTGCTACTCTCATGCCTGATAAATCATCAAGGGGACAACAGAGGGTCCTTCCATGGTACTCTCCACTaGGACCACGATCTCATGGTC +
Preference number: 5 (lower is better)
Translates to: CLLLSCLINHQGDNRGSFHGTLH*DHDLMV
Trigger: GACCATGAGATCGTGGTCCAAGTGGAGAGTACCATG...GAAGGACCCTCTGTTGTCCCCTTGATGATTTATCAGGCATGAGAGTAGCAGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp CCGATCAAAAAGCCATGTTGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCAGTACGAACGCCTTaGGATTACTCTGGCTGTCAC +
Preference number: 5 (lower is better)
Translates to: PIKKPCCSESLGGSRCVFSVRTP*DYSGCH
Trigger: GTGACAGCCAGAGTAATCCAAAGGCGTTCGTACTGA...GAACACACACCTACTCCCACCCAAGGACTCAGAACAACATGGCTTTTTGATCGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp AACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTACGTAAGCTCCGGAAATGGGTaGGGGATGGCCGGAAGAGAT +
Preference number: 5 (lower is better)
Translates to: NNSLRQGKYKVLRQTSYVSSGNG*GMAGRD
Trigger: ATCTCTTCCGGCCATCCCCAACCCATTTCCGGAGCT...TACGTAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS CCA 90 bp TTTCTGAATAAGAATTTGCTCTCACTTGGCATGGTACTCTCCACTTaGACCACGATCTCATGGTCCTCCAGGCACCTCTCTAATCCCAGT +
Preference number: 5 (lower is better)
Translates to: FLNKNLLSLGMVLST*TTISWSSRHLSNPS
Trigger: ACTGGGATTAGAGAGGTGCCTGGAGGACCATGAGATCGTGGTCCAAGTGGAGAGTACCATGCCAAGTGAGAGCAAATTCTTATTCAGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp TCTTCCCACACTTGCACTGGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGGTATCAGACTGCATGTaGCAAGCTGAGTTAAGGCTT +
Preference number: 5 (lower is better)
Translates to: SSHTCTGSLPSPNFKWLTVSDCM*QAELRL
Trigger: AAGCCTTAACTCAGCTTGCAACATGCAGTCTGATAC...CGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGTGCAAGTGTGGGAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp AAAAGCCATGTTGTTCTGAGTCCTTGGGTGGGAGTAGGTGTGTGTTCTCACCCTAGAATTTGCTCTCACTaGGCATGGTACTCTCCACTT +
Preference number: 5 (lower is better)
Translates to: KSHVVLSPWVGVGVCSHPRICSH*AWYSPL
Trigger: AAGTGGAGAGTACCATGCCAAGTGAGAGCAAATTCT...AGGGTGAGAACACACACCTACTCCCACCCAAGGACTCAGAACAACATGGCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS TCA 90 bp CCATCATCCTCGCAAGGTAAGATCTGGAAGTTTTTAATCTTCTGGTaGTGGCACAGTGTCAGTACGAACGCCTTTGGATTACTCTGGCTG +
Preference number: 5 (lower is better)
Translates to: PSSSQGKIWKFLIFW*WHSVSTNAFGLLWL
Trigger: CAGCCAGAGTAATCCAAAGGCGTTCGTACTGACACTGTGCCATCACCAGAAGATTAAAAACTTCCAGATCTTACCTTGCGAGGATGATGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp CGGTTTGAATTGTCAAGGTTATTCCAGGGCAAGAGTTCATTTCCAATCATTTTTCACAGGCTGCGAGCGTaGCATTTTCTGCCTCGGGGA +
Preference number: 5 (lower is better)
Translates to: RFELSRLFQGKSSFPIIFHRLRA*HFLPRG
Trigger: TCCCCGAGGCAGAAAATGCAACGCTCGCAGCCTGTG...AAAAATGATTGGAAATGAACTCTTGCCCTGGAATAACCTTGACAATTCAAACCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp TCTTCCCACACTTGCACTGGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGTCTTCACTAAAGACTTaGACATCCTTTCTGAGCCTC +
Preference number: 5 (lower is better)
Translates to: SSHTCTGSLPSPNFKWLTSSLKT*TSFLSL
Trigger: GAGGCTCAGAAAGGATGTCAAAGTCTTTAGTGAAGA...CGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGTGCAAGTGTGGGAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
CDS-3UTR CAA 90 bp TCTTCCCACACTTGCACTGGATCTCTTCCCTCCCCCAATTTTAAATGGCTGACGTCTTCACTAAAGACTTaGACATCATGCTTGGCAGGT +
Preference number: 5 (lower is better)
Translates to: SSHTCTGSLPSPNFKWLTSSLKT*TSCLAG
Trigger: ACCTGCCAAGCATGATGTCAAAGTCTTTAGTGAAGA...CGTCAGCCATTTAAAATTGGGGGAGGGAAGAGATCCAGTGCAAGTGTGGGAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp CTTCAACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTAGTCCACGAGACCTTGTaGCTTGATGATCCTGTGAGA +
Preference number: 5 (lower is better)
Translates to: LQQFTSAREVQSSTSNQLVHETL*LDDPVR
Trigger: TCTCACAGGATCATCAAGCAACAAGGTCTCGTGGAC...TAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTTGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp CGCGGTTTGAATTGTCAAGGTTATTCCAGGGCAAGAGTTCATTTCCAATCATTTAGAATCTCCACCACTTaGCTGGTCCCATCTTCACTA +
Preference number: 5 (lower is better)
Translates to: RGLNCQGYSRARVHFQSFRISTT*LVPSSL
Trigger: TAGTGAAGATGGGACCAGCAAAGTGGTGGAGATTCT...AAATGATTGGAAATGAACTCTTGCCCTGGAATAACCTTGACAATTCAAACCGCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS-3UTR CAA 90 bp CTTCAACAATTCACTTCGGCAAGGGAAGTACAAAGTTCTACGTCAAACCAGCTAAGAATTTGCTCTCACTaGGCATGGTACTCTCCACTT +
Preference number: 5 (lower is better)
Translates to: LQQFTSAREVQSSTSNQLRICSH*AWYSPL
Trigger: AAGTGGAGAGTACCATGCCAAGTGAGAGCAAATTCT...TAGCTGGTTTGACGTAGAACTTTGTACTTCCCTTGCCGAAGTGAATTGTTGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS GCA 72 bp CCTCGGGGACGCCTGTGGCTGTCCCCGGGAGCTAGATaGTGCTCCCTGGTTGCTGGCATGCTGGCCATCCTC +
Preference number: 6 (lower is better)
Translates to: PRGRLWLSPGAR*CSLVAGMLAIL
Trigger: GAGGATGGCCAGCATGCCAGCAACCAGGGAGCAGCATCTAGCTCCCGGGGACAGCCACAGGCGTCCCCGAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
ENSMUST00000143386.8
ENSMUST00000143915.2
ENSMUST00000150972.8
CDS GCA 72 bp CGGGGACGCCTGTGGCTGTCCCCGGGAGCTAGATGCTaGTCCCTGGTTGCTGGCATGCTGGCCATCCTCAAG +
Preference number: 6 (lower is better)
Translates to: RGRLWLSPGARC*SLVAGMLAILK
Trigger: CTTGAGGATGGCCAGCATGCCAGCAACCAGGGAGCAGCATCTAGCTCCCGGGGACAGCCACAGGCGTCCCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
ENSMUST00000143386.8
ENSMUST00000143915.2
ENSMUST00000150972.8
CDS CCA 72 bp CAGACCTGGACGGGTGAGTTTCGACAGCTGAAAGCCTaGAGGGAAATGCTTGGCAGGTGGCTGGCTCGGAGG +
Preference number: 6 (lower is better)
Translates to: QTWTGEFRQLKA*REMLGRWLARR
Trigger: CCTCCGAGCCAGCCACCTGCCAAGCATTTCCCTCCAGGCTTTCAGCTGTCGAAACTCACCCGTCCAGGTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000143386.8
CDS CCA 72 bp AGCTGCAGGTGTCTGGGTTCCTGCAGAAGCTGCGCCTaGCCACCGTTGGACTGCTGGCACCAATTGACCATC +
Preference number: 6 (lower is better)
Translates to: SCRCLGSCRSCA*PPLDCWHQLTI
Trigger: GATGGTCAATTGGTGCCAGCAGTCCAACGGTGGCCAGGCGCAGCTTCTGCAGGAACCCAGACACCTGCAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109653.8
CDS CAA 72 bp TGTGGCTGTCCCCGGGAGCTAGATGCTGCTCCCTGGTaGCTGGCATGCTGGCCATCCTCAAGAAGTGGTGCA +
Preference number: 6 (lower is better)
Translates to: CGCPRELDAAPW*LACWPSSRSGA
Trigger: TGCACCACTTCTTGAGGATGGCCAGCATGCCAGCAACCAGGGAGCAGCATCTAGCTCCCGGGGACAGCCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
ENSMUST00000143386.8
ENSMUST00000143915.2
ENSMUST00000150972.8
CDS GCA 72 bp GCAGTGGGCTTTGGCTGCTTAGGATATTCATCCGTGTaGTCCGCTTACGCCAGGCATGGCCCTCTTCCAGGG +
Preference number: 6 (lower is better)
Translates to: AVGFGCLGYSSV*SAYARHGPLPG
Trigger: CCCTGGAAGAGGGCCATGCCTGGCGTAAGCGGAGCACACGGATGAATATCCTAAGCAGCCAAAGCCCACTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS CCA 72 bp TTACGCCAGGCATGGCCCTCTTCCAGGGCAGCACTCTaGGCTTCAGCCGGGTTATCGATCACTCTTCCGATT +
Preference number: 6 (lower is better)
Translates to: LRQAWPSSRAAL*ASAGLSITLPI
Trigger: AATCGGAAGAGTGATCGATAACCCGGCTGAAGCCCAGAGTGCTGCCCTGGAAGAGGGCCATGCCTGGCGTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS CAA 72 bp GCTGTCACGAAGGAGGAACAGCCCGTCCACGAGACCTaGTTGCTTGATGATCCTGTGAGACTCCTCGCGGGA +
Preference number: 6 (lower is better)
Translates to: AVTKEEQPVHET*LLDDPVRLLAG
Trigger: TCCCGCGAGGAGTCTCACAGGATCATCAAGCAACAAGGTCTCGTGGACGGGCTGTTCCTCCTTCGTGACAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS TCA 72 bp TTTGTCCACAGACCTGGACGGGTGAGTTTCGACAGCTaGAAGCCTGGAGGGAAATGCTTGGCAGGTGGCTGG +
Preference number: 6 (lower is better)
Translates to: FVHRPGRVSFDS*KPGGKCLAGGW
Trigger: CCAGCCACCTGCCAAGCATTTCCCTCCAGGCTTTCAGCTGTCGAAACTCACCCGTCCAGGTCTGTGGACAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000143386.8
CDS CAA 72 bp GTCACGAAGGAGGAACAGCCCGTCCACGAGACCTTGTaGCTTGATGATCCTGTGAGACTCCTCGCGGGAGAT +
Preference number: 6 (lower is better)
Translates to: VTKEEQPVHETL*LDDPVRLLAGD
Trigger: ATCTCCCGCGAGGAGTCTCACAGGATCATCAAGCAACAAGGTCTCGTGGACGGGCTGTTCCTCCTTCGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS GCA 72 bp AGCTTCTTCCAAGACTTGCGTCCTACCTCTTTCACCTaGAAGAACCCCTGGATCTCAGGGCAGCTGCTGGTG +
Preference number: 6 (lower is better)
Translates to: SFFQDLRPTSFT*KNPWISGQLLV
Trigger: CACCAGCAGCTGCCCTGAGATCCAGGGGTTCTTGCAGGTGAAAGAGGTAGGACGCAAGTCTTGGAAGAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS GCA 72 bp GGCCACAAGAGAATTCTCAGAAACACTGCGCATAGGTaGGTTGAAAGGAGGGGGCAGACCCTTCCTCTGTGG +
Preference number: 6 (lower is better)
Translates to: GHKRILRNTAHR*VERRGQTLPLW
Trigger: CCACAGAGGAAGGGTCTGCCCCCTCCTTTCAACGCACCTATGCGCAGTGTTTCTGAGAATTCTCTTGTGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS CCA 72 bp CGGGAGCTAGATGCTGCTCCCTGGTTGCTGGCATGCTaGCCATCCTCAAGAAGTGGTGCAGTATCAGTATCA +
Preference number: 6 (lower is better)
Translates to: RELDAAPWLLAC*PSSRSGAVSVS
Trigger: TGATACTGATACTGCACCACTTCTTGAGGATGGCCAGCATGCCAGCAACCAGGGAGCAGCATCTAGCTCCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
ENSMUST00000143386.8
ENSMUST00000143915.2
ENSMUST00000150972.8
CDS CCA 72 bp TGGTCCTCCAGGCACCTCTCTAATCCCAGTTGTGGGTaGTGTTCCACCAGAGTCCAGCTGTTGTCATCCACA +
Preference number: 6 (lower is better)
Translates to: WSSRHLSNPSCG*CSTRVQLLSST
Trigger: TGTGGATGACAACAGCTGGACTCTGGTGGAACACCACCCACAACTGGGATTAGAGAGGTGCCTGGAGGACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS CCA 72 bp TGGCACAGTGTCAGTACGAACGCCTTTGGATTACTCTaGCTGTCACGAAGGAGGAACAGCCCGTCCACGAGA +
Preference number: 6 (lower is better)
Translates to: WHSVSTNAFGLL*LSRRRNSPSTR
Trigger: TCTCGTGGACGGGCTGTTCCTCCTTCGTGACAGCCAGAGTAATCCAAAGGCGTTCGTACTGACACTGTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS TCA 72 bp ATCTCGCAGTGGTCTTTGTCCACAGACCTGGACGGGTaGGTTTCGACAGCTGAAAGCCTGGAGGGAAATGCT +
Preference number: 6 (lower is better)
Translates to: ISQWSLSTDLDG*VSTAESLEGNA
Trigger: AGCATTTCCCTCCAGGCTTTCAGCTGTCGAAACTCACCCGTCCAGGTCTGTGGACAAAGACCACTGCGAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000143386.8
CDS GCA 72 bp AGCAGTCTGAAGGCAGTCATCCAGCAAGTACGGATCTaGTCATCTTCGGCACAGAGCAGACGAAGCTCCTTC +
Preference number: 6 (lower is better)
Translates to: SSLKAVIQQVRI*SSSAQSRRSSF
Trigger: GAAGGAGCTTCGTCTGCTCTGTGCCGAAGATGAGCAGATCCGTACTTGCTGGATGACTGCCTTCAGACTGCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS CCA 72 bp AGGTGCGTTGAAAGGAGGGGGCAGACCCTTCCTCTGTaGGATGCGATAGTTTTGGTACAGGAGCATTCCGTA +
Preference number: 6 (lower is better)
Translates to: RCVERRGQTLPL*DAIVLVQEHSV
Trigger: TACGGAATGCTCCTGTACCAAAACTATCGCATCCCACAGAGGAAGGGTCTGCCCCCTCCTTTCAACGCACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS CCA 72 bp CTTCTGGTGATGGCACAGTGTCAGTACGAACGCCTTTaGATTACTCTGGCTGTCACGAAGGAGGAACAGCCC +
Preference number: 6 (lower is better)
Translates to: LLVMAQCQYERL*ITLAVTKEEQP
Trigger: GGGCTGTTCCTCCTTCGTGACAGCCAGAGTAATCCAAAGGCGTTCGTACTGACACTGTGCCATCACCAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS CCA 72 bp TCACTAAAGACTTTGACATCATGCTTGGCAGGTGGCTaGCTCGGAGGAGGAGGTAAGGAGCTAGGAGCAACC +
Preference number: 6 (lower is better)
Translates to: SLKTLTSCLAGG*LGGGGKELGAT
Trigger: GGTTGCTCCTAGCTCCTTACCTCCTCCTCCGAGCCAGCCACCTGCCAAGCATGATGTCAAAGTCTTTAGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109654.8
CDS CAA 72 bp GATCTGCGCAGGCACACATACAGCTTCTTCCAAGACTaGCGTCCTACCTCTTTCACCTGCAAGAACCCCTGG +
Preference number: 6 (lower is better)
Translates to: DLRRHTYSFFQD*RPTSFTCKNPW
Trigger: CCAGGGGTTCTTGCAGGTGAAAGAGGTAGGACGCAAGTCTTGGAAGAAGCTGTATGTGTGCCTGCGCAGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS CAA 90 bp ACCACTTTGCTGGTCCCATCTTCACTAAAGACTTTGACATCATGCTaGGCAGGTGGCTGGCTCGGAGGAGGAGGTAAGGAGCTAGGAGCA +
Preference number: 6 (lower is better)
Translates to: TTLLVPSSLKTLTSC*AGGWLGGGGKELGA
Trigger: TGCTCCTAGCTCCTTACCTCCTCCTCCGAGCCAGCCACCTGCCAAGCATGATGTCAAAGTCTTTAGTGAAGATGGGACCAGCAAAGTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109654.8
CDS TCA 72 bp CAGTTCTTAACTGCTGGTCTTCCTCCTGAAGGCGCCTaGGAATGTGCACAGGCTGCGAGCGTTGCATTTTCT +
Preference number: 6 (lower is better)
Translates to: QFLTAGLPPEGA*ECAQAASVAFS
Trigger: AGAAAATGCAACGCTCGCAGCCTGTGCACATTCTCAGGCGCCTTCAGGAGGAAGACCAGCAGTTAAGAACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
ENSMUST00000143386.8
ENSMUST00000143915.2
ENSMUST00000150972.8
CDS GCA 72 bp ATCTGCGCAGGCACACATACAGCTTCTTCCAAGACTTaGGTCCTACCTCTTTCACCTGCAAGAACCCCTGGA +
Preference number: 6 (lower is better)
Translates to: ICAGTHTASSKT*VLPLSPARTPG
Trigger: TCCAGGGGTTCTTGCAGGTGAAAGAGGTAGGACGCAAGTCTTGGAAGAAGCTGTATGTGTGCCTGCGCAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109654.8
CDS GCA 72 bp TTGCTGGTCCCATCTTCACTAAAGACTTTGACATCATaGTTGGCAGGTGGCTGGCTCGGAGGAGGAGGTAAG +
Preference number: 6 (lower is better)
Translates to: LLVPSSLKTLTS*LAGGWLGGGGK
Trigger: CTTACCTCCTCCTCCGAGCCAGCCACCTGCCAAGCATGATGTCAAAGTCTTTAGTGAAGATGGGACCAGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109654.8
CDS CAA 72 bp ACAAGAGAATTCTCAGAAACACTGCGCATAGGTGCGTaGAAAGGAGGGGGCAGACCCTTCCTCTGTGGGATG +
Preference number: 6 (lower is better)
Translates to: TREFSETLRIGA*KGGGRPFLCGM
Trigger: CATCCCACAGAGGAAGGGTCTGCCCCCTCCTTTCAACGCACCTATGCGCAGTGTTTCTGAGAATTCTCTTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS CAA 90 bp GTTAGAATCTCCACCACTTTGCTGGTCCCATCTTCACTAAAGACTTaGACATCATGCTTGGCAGGTGGCTGGCTCGGAGGAGGAGGTAAG +
Preference number: 6 (lower is better)
Translates to: VRISTTLLVPSSLKT*TSCLAGGWLGGGGK
Trigger: CTTACCTCCTCCTCCGAGCCAGCCACCTGCCAAGCATGATGTCAAAGTCTTTAGTGAAGATGGGACCAGCAAAGTGGTGGAGATTCTAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109654.8
CDS GCA 72 bp ACGTCCATGGAACCAATGCTGAGTCCTGTGAATCACTaGATTCAGGGTAGAAGGATGCAGTGGGCTTTGGCT +
Preference number: 6 (lower is better)
Translates to: TSMEPMLSPVNH*IQGRRMQWALA
Trigger: AGCCAAAGCCCACTGCATCCTTCTACCCTGAATGCAGTGATTCACAGGACTCAGCATTGGTTCCATGGACGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS CCA 72 bp AGTGACTTTTGTAAACCAGCAGCTGGCACAGGTCCCTaGCTGTCATGTCGGTTAGAATCTCCACCACTTTGC +
Preference number: 6 (lower is better)
Translates to: SDFCKPAAGTGP*LSCRLESPPLC
Trigger: GCAAAGTGGTGGAGATTCTAACCGACATGACAGCCAGGGACCTGTGCCAGCTGCTGGTTTACAAAAGTCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS CCA 72 bp AAGAATTTGCTCTCACTTGGCATGGTACTCTCCACTTaGACCACGATCTCATGGTCCTCCAGGCACCTCTCT +
Preference number: 6 (lower is better)
Translates to: KNLLSLGMVLST*TTISWSSRHLS
Trigger: AGAGAGGTGCCTGGAGGACCATGAGATCGTGGTCCAAGTGGAGAGTACCATGCCAAGTGAGAGCAAATTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS CAA 90 bp TGGCACAGGTCCCTGGCTGTCATGTCGGTTAGAATCTCCACCACTTaGCTGGTCCCATCTTCACTAAAGACTTTGACATCCTTTCTGAGC +
Preference number: 6 (lower is better)
Translates to: WHRSLAVMSVRISTT*LVPSSLKTLTSFLS
Trigger: GCTCAGAAAGGATGTCAAAGTCTTTAGTGAAGATGGGACCAGCAAAGTGGTGGAGATTCTAACCGACATGACAGCCAGGGACCTGTGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
CDS CAA 90 bp TGGCACAGGTCCCTGGCTGTCATGTCGGTTAGAATCTCCACCACTTaGCTGGTCCCATCTTCACTAAAGACTTTGACATCATGCTTGGCA +
Preference number: 6 (lower is better)
Translates to: WHRSLAVMSVRISTT*LVPSSLKTLTSCLA
Trigger: TGCCAAGCATGATGTCAAAGTCTTTAGTGAAGATGGGACCAGCAAAGTGGTGGAGATTCTAACCGACATGACAGCCAGGGACCTGTGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109654.8
CDS TCA 72 bp TCAGATCGGAGAACTTGGTGTTCCCATCATCCAGAGTaGAGAAGGTCTGCCCATCATCCTCGCAAGGTAAGA +
Preference number: 6 (lower is better)
Translates to: SDRRTWCSHHPE*RRSAHHPRKVR
Trigger: TCTTACCTTGCGAGGATGATGGGCAGACCTTCTTCACTCTGGATGATGGGAACACCAAGTTCTCCGATCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS CCA 72 bp ATCACTGCATTCAGGGTAGAAGGATGCAGTGGGCTTTaGCTGCTTAGGATATTCATCCGTGTGCTCCGCTTA +
Preference number: 6 (lower is better)
Translates to: ITAFRVEGCSGL*LLRIFIRVLRL
Trigger: TAAGCGGAGCACACGGATGAATATCCTAAGCAGCCAAAGCCCACTGCATCCTTCTACCCTGAATGCAGTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS CAA 90 bp GGCAGCACTCTGGGCTTCAGCCGGGTTATCGATCACTCTTCCGATTaGTCCAGAAAAATCCATGGCCACAAGAGAATTCTCAGAAACACT +
Preference number: 6 (lower is better)
Translates to: GSTLGFSRVIDHSSD*SRKIHGHKRILRNT
Trigger: AGTGTTTCTGAGAATTCTCTTGTGGCCATGGATTTTTCTGGACAAATCGGAAGAGTGATCGATAACCCGGCTGAAGCCCAGAGTGCTGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS CAA 72 bp CTGGGCTTCAGCCGGGTTATCGATCACTCTTCCGATTaGTCCAGAAAAATCCATGGCCACAAGAGAATTCTC +
Preference number: 6 (lower is better)
Translates to: LGFSRVIDHSSD*SRKIHGHKRIL
Trigger: GAGAATTCTCTTGTGGCCATGGATTTTTCTGGACAAATCGGAAGAGTGATCGATAACCCGGCTGAAGCCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS TCA 72 bp AGTGTCGGTTGGACACTGGTTCTTAGGTTGTTTCTTTaGAAATCTCGCAGTGGTCTTTGTCCACAGACCTGG +
Preference number: 6 (lower is better)
Translates to: SVGWTLVLRLFL*KSRSGLCPQTW
Trigger: CCAGGTCTGTGGACAAAGACCACTGCGAGATTTTCAAAGAAACAACCTAAGAACCAGTGTCCAACCGACACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000143386.8
CDS GCA 72 bp AACTTGGTGTTCCCATCATCCAGAGTGAAGAAGGTCTaGCCATCATCCTCGCAAGGTAAGATCTGGAAGTTT +
Preference number: 6 (lower is better)
Translates to: NLVFPSSRVKKV*PSSSQGKIWKF
Trigger: AAACTTCCAGATCTTACCTTGCGAGGATGATGGGCAGACCTTCTTCACTCTGGATGATGGGAACACCAAGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS TCA 72 bp TCGCAAGGTAAGATCTGGAAGTTTTTAATCTTCTGGTaGTGGCACAGTGTCAGTACGAACGCCTTTGGATTA +
Preference number: 6 (lower is better)
Translates to: SQGKIWKFLIFW*WHSVSTNAFGL
Trigger: TAATCCAAAGGCGTTCGTACTGACACTGTGCCATCACCAGAAGATTAAAAACTTCCAGATCTTACCTTGCGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8
CDS CCA 72 bp GCACCAATTGACCATCTGATCCGGGAAGAAGTTCACTaGATTCTTAAAGAACTCGTACTTCGCATAATTCTT +
Preference number: 6 (lower is better)
Translates to: APIDHLIREEVH*ILKELVLRIIL
Trigger: AAGAATTATGCGAAGTACGAGTTCTTTAAGAATCCAGTGAACTTCTTCCCGGATCAGATGGTCAATTGGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093321.12
ENSMUST00000109653.8
ENSMUST00000109654.8