Pregenerated sensors for GPX5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004344Ensembl transcript IDs: ENSMUST00000110491.9
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGGACAAGTCCCCGATCCTGGCATCAGGGAGATGCCCTCCTCCTGTaGGAGTCAATCTGCTCAGACTCTCCCTCAGATTGGCCGCAGGAG | + |
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Preference number: 1 (lower is better) Translates to: GTSPRSWHQGDALLL*ESICSDSPSDWPQE Trigger: CTCCTGCGGCCAATCTGAGGGAGAGTCTGAGCAGATTGACTCGCACAGGAGGAGGGCATCTCCCTGATGCCAGGATCGGGGACTTGTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| 3UTR GCA 90 bp | CGATCCTGGCATCAGGGAGATGCCCTCCTCCTGTGCGAGTCAATCTaGTCAGACTCTCCCTCAGATTGGCCGCAGGAGAAGGGCAGAGAG | + |
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Preference number: 1 (lower is better) Translates to: RSWHQGDALLLCESI*SDSPSDWPQEKGRE Trigger: CTCTCTGCCCTTCTCCTGCGGCCAATCTGAGGGAGAGTCTGAGCAGATTGACTCGCACAGGAGGAGGGCATCTCCCTGATGCCAGGATCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| 3UTR CCA 90 bp | ATTGCTCTTTCTCCACCTTCAGGCTGGGAAGAGAAAGACTCAGAATaGCCAAGGGGACTCTTCCTTCAGATACAGCCTCCAACCAAGCTA | + |
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Preference number: 1 (lower is better) Translates to: IALSPPSGWEEKDSE*PRGLFLQIQPPTKL Trigger: TAGCTTGGTTGGAGGCTGTATCTGAAGGAAGAGTCCCCTTGGCCATTCTGAGTCTTTCTCTTCCCAGCCTGAAGGTGGAGAAAGAGCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| 3UTR TCA 90 bp | AGGATGGAGACAGAGATGAAGACCGAATTAAAAGACCTCAGGAACTaGCAAGGCATTTGTCTCAGGAGACACACAGTTTCAGAGGAGCAA | + |
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Preference number: 1 (lower is better) Translates to: RMETEMKTELKDLRN*QGICLRRHTVSEEQ Trigger: TTGCTCCTCTGAAACTGTGTGTCTCCTGAGACAAATGCCTTGTCAGTTCCTGAGGTCTTTTAATTCGGTCTTCATCTCTGTCTCCATCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| 3UTR-3UTR CCA 90 bp | ATTGGAAATAATATGTCTAGTTCTGAAGTTGAAGAATCCCAGGTTGGGGTGTGTTCTCCACCTTCAGGCTaGGAAGAGAAAGACTCAGAA | + |
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Preference number: 2 (lower is better) Translates to: IGNNMSSSEVEESQVGVCSPPSG*EEKDSE Trigger: TTCTGAGTCTTTCTCTTCCCAGCCTGAAGGTGGAGA...ACACACCCCAACCTGGGATTCTTCAACTTCAGAACTAGACATATTATTTCCAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| 3UTR GCA 72 bp | CCCCGATCCTGGCATCAGGGAGATGCCCTCCTCCTGTaGGAGTCAATCTGCTCAGACTCTCCCTCAGATTGG | + |
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Preference number: 3 (lower is better) Translates to: PRSWHQGDALLL*ESICSDSPSDW Trigger: CCAATCTGAGGGAGAGTCTGAGCAGATTGACTCGCACAGGAGGAGGGCATCTCCCTGATGCCAGGATCGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| 3UTR GCA 72 bp | CATCAGGGAGATGCCCTCCTCCTGTGCGAGTCAATCTaGTCAGACTCTCCCTCAGATTGGCCGCAGGAGAAG | + |
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Preference number: 3 (lower is better) Translates to: HQGDALLLCESI*SDSPSDWPQEK Trigger: CTTCTCCTGCGGCCAATCTGAGGGAGAGTCTGAGCAGATTGACTCGCACAGGAGGAGGGCATCTCCCTGATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| 3UTR GCA 72 bp | ATCAGGGACAAGTCCCCGATCCTGGCATCAGGGAGATaGCCTCCTCCTGTGCGAGTCAATCTGCTCAGACTC | + |
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Preference number: 3 (lower is better) Translates to: IRDKSPILASGR*PPPVRVNLLRL Trigger: GAGTCTGAGCAGATTGACTCGCACAGGAGGAGGGCATCTCCCTGATGCCAGGATCGGGGACTTGTCCCTGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| 3UTR GCA 72 bp | CTTAGGCTGGCCTGCCATTCATGTTCCTCCTGTCGCTaGCTGTCTGAAATGTCTGTAATGTCTGCTGAGTGC | + |
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Preference number: 3 (lower is better) Translates to: LRLACHSCSSCR*LSEMSVMSAEC Trigger: GCACTCAGCAGACATTACAGACATTTCAGACAGGCAGCGACAGGAGGAACATGAATGGCAGGCCAGCCTAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| 3UTR CCA 72 bp | TCTCCACCTTCAGGCTGGGAAGAGAAAGACTCAGAATaGCCAAGGGGACTCTTCCTTCAGATACAGCCTCCA | + |
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Preference number: 3 (lower is better) Translates to: SPPSGWEEKDSE*PRGLFLQIQPP Trigger: TGGAGGCTGTATCTGAAGGAAGAGTCCCCTTGGCCATTCTGAGTCTTTCTCTTCCCAGCCTGAAGGTGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| 3UTR GCA 72 bp | CAGAGGAGCAAACTAGATTGTCTGACCAGCCTCCATTaGTCTTTCTCCACCTTCAGGCTGGGAAGAGAAAGA | + |
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Preference number: 3 (lower is better) Translates to: QRSKLDCLTSLH*SFSTFRLGRER Trigger: TCTTTCTCTTCCCAGCCTGAAGGTGGAGAAAGAGCAATGGAGGCTGGTCAGACAATCTAGTTTGCTCCTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| 3UTR CCA 72 bp | GTGCAGGGGAAGAACTTAGGCAATTTAGGGGTGACTTaGGGAGGTAGAGTCCATTTCAGTGAAGAGTGTGCT | + |
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Preference number: 3 (lower is better) Translates to: VQGKNLGNLGVT*GGRVHFSEECA Trigger: AGCACACTCTTCACTGAAATGGACTCTACCTCCCCAAGTCACCCCTAAATTGCCTAAGTTCTTCCCCTGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| 3UTR-3UTR CAA 90 bp | TTCAGGCTGGGAAGAGAAAGACTCAGAATGGCCAAGGGGACTCTTCCTTCAGATAGTAGTTCAATCGGGTaGTGTTGGTGGTGGTGGATT | + |
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Preference number: 3 (lower is better) Translates to: FRLGRERLRMAKGTLPSDSSSIG*CWWWWI Trigger: AATCCACCACCACCAACACAACCCGATTGAACTACT...ATCTGAAGGAAGAGTCCCCTTGGCCATTCTGAGTCTTTCTCTTCCCAGCCTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| 3UTR TCA 72 bp | TACAGCCTCCAACCAAGCTATCCCCATATCCTTTGGTaGATTAGAGTAGTTCAATCGGGTTGTGTTGGTGGT | + |
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Preference number: 3 (lower is better) Translates to: YSLQPSYPHILW*IRVVQSGCVGG Trigger: ACCACCAACACAACCCGATTGAACTACTCTAATTCACCAAAGGATATGGGGATAGCTTGGTTGGAGGCTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| 3UTR-3UTR CAA 90 bp | AATAATATGTCTAGTTCTGAAGTTGAAGAATCCCAGGTTGGGGTGTGTATGTGGGAACTGACAAGGCATTaGTCTCAGGAGACACACAGT | + |
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Preference number: 3 (lower is better) Translates to: NNMSSSEVEESQVGVCMWELTRH*SQETHS Trigger: ACTGTGTGTCTCCTGAGACAAATGCCTTGTCAGTTC...CCACATACACACCCCAACCTGGGATTCTTCAACTTCAGAACTAGACATATTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| 3UTR TCA 72 bp | ACAGAGATGAAGACCGAATTAAAAGACCTCAGGAACTaGCAAGGCATTTGTCTCAGGAGACACACAGTTTCA | + |
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Preference number: 3 (lower is better) Translates to: TEMKTELKDLRN*QGICLRRHTVS Trigger: TGAAACTGTGTGTCTCCTGAGACAAATGCCTTGTCAGTTCCTGAGGTCTTTTAATTCGGTCTTCATCTCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS-3UTR CCA 90 bp | TGCTCTTTCTCCACCTTCAGGCTGGGAAGAGAAAGACTCAGAATGGCCAAGGGGGTGCTGACAGGAGCCTaGTGGAACCAGCGCATGACA | + |
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Preference number: 4 (lower is better) Translates to: CSFSTFRLGRERLRMAKGVLTGA*WNQRMT Trigger: TGTCATGCGCTGGTTCCACCAGGCTCCTGTCAGCAC...CCCCTTGGCCATTCTGAGTCTTTCTCTTCCCAGCCTGAAGGTGGAGAAAGAGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS-3UTR CCA 90 bp | TGCTCTTTCTCCACCTTCAGGCTGGGAAGAGAAAGACTCAGAATGGCCAAGGGGTTCCAGCGGATGTCATaGACTTTTATTGGCTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: CSFSTFRLGRERLRMAKGFQRMS*TFIGSQ Trigger: CTGGGAGCCAATAAAAGTCCATGACATCCGCTGGAA...CCCCTTGGCCATTCTGAGTCTTTCTCTTCCCAGCCTGAAGGTGGAGAAAGAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS-3UTR CCA 90 bp | GACCAGCCTCCATTGCTCTTTCTCCACCTTCAGGCTGGGAAGAGAAAGACTCAGTATAACCAAGCCAAATaGCTTCAGATCCTCCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: DQPPLLFLHLQAGKRKTQYNQAK*LQILLE Trigger: CTCCAGGAGGATCTGAAGCCATTTGGCTTGGTTATA...CTGAGTCTTTCTCTTCCCAGCCTGAAGGTGGAGAAAGAGCAATGGAGGCTGGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| 3UTR CAA 72 bp | TCAGAGGAGCAAACTAGATTGTCTGACCAGCCTCCATaGCTCTTTCTCCACCTTCAGGCTGGGAAGAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: SEEQTRLSDQPP*LFLHLQAGKRK Trigger: CTTTCTCTTCCCAGCCTGAAGGTGGAGAAAGAGCAATGGAGGCTGGTCAGACAATCTAGTTTGCTCCTCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| 3UTR CAA 72 bp | CTCAGGAGACACACAGTTTCAGAGGAGCAAACTAGATaGTCTGACCAGCCTCCATTGCTCTTTCTCCACCTT | + |
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Preference number: 4 (lower is better) Translates to: LRRHTVSEEQTR*SDQPPLLFLHL Trigger: AAGGTGGAGAAAGAGCAATGGAGGCTGGTCAGACAATCTAGTTTGCTCCTCTGAAACTGTGTGTCTCCTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS-3UTR CCA 90 bp | TGCTCTTTCTCCACCTTCAGGCTGGGAAGAGAAAGACTCAGAATGGCCAAGGGGTATATGGTTTTGAAATaGCTCAGGTACGCCATGATG | + |
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Preference number: 4 (lower is better) Translates to: CSFSTFRLGRERLRMAKGYMVLK*LRYAMM Trigger: CATCATGGCGTACCTGAGCCATTTCAAAACCATATA...CCCCTTGGCCATTCTGAGTCTTTCTCTTCCCAGCCTGAAGGTGGAGAAAGAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS-3UTR CCA 90 bp | TCAGGCTGGGAAGAGAAAGACTCAGAATGGCCAAGGGGACTCTTCCTTCAGATACCTCATAGTCGTAGATaGTGCCTTTCACATCTTTGT | + |
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Preference number: 4 (lower is better) Translates to: SGWEEKDSEWPRGLFLQIPHSRR*CLSHLC Trigger: ACAAAGATGTGAAAGGCACCATCTACGACTATGAGG...TATCTGAAGGAAGAGTCCCCTTGGCCATTCTGAGTCTTTCTCTTCCCAGCCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS-3UTR TCA 90 bp | AAGAACTTAGGCAATTTAGGGGTGACTTGGGGAGGTAGAGTCCATTTCAGTGAACTGGACGAACATACTTaGGCCCAGGAAGAATCTCTA | + |
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Preference number: 4 (lower is better) Translates to: KNLGNLGVTWGGRVHFSELDEHT*AQEESL Trigger: TAGAGATTCTTCCTGGGCTCAAGTATGTTCGTCCAG...TTCACTGAAATGGACTCTACCTCCCCAAGTCACCCCTAAATTGCCTAAGTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS-3UTR TCA 90 bp | AATAATATGTCTAGTTCTGAAGTTGAAGAATCCCAGGTTGGGGTGTGTATGTGGACAGTCTCTGAGGGGTaGGGACAAGAACGCTTCAAG | + |
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Preference number: 4 (lower is better) Translates to: NNMSSSEVEESQVGVCMWTVSEG*GQERFK Trigger: CTTGAAGCGTTCTTGTCCTCACCCCTCAGAGACTGT...CCACATACACACCCCAACCTGGGATTCTTCAACTTCAGAACTAGACATATTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| 3UTR CAA 72 bp | GACCGAATTAAAAGACCTCAGGAACTGACAAGGCATTaGTCTCAGGAGACACACAGTTTCAGAGGAGCAAAC | + |
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Preference number: 4 (lower is better) Translates to: DRIKRPQELTRH*SQETHSFRGAN Trigger: GTTTGCTCCTCTGAAACTGTGTGTCTCCTGAGACAAATGCCTTGTCAGTTCCTGAGGTCTTTTAATTCGGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS-3UTR GCA 90 bp | ATTGGAAATAATATGTCTAGTTCTGAAGTTGAAGAATCCCAGGTTGGGGTGTGTTTGACAAAGAGGACGTaGTTTCCTGCATACTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: IGNNMSSSEVEESQVGVCLTKRT*FPAYCL Trigger: CAAGCAGTATGCAGGAAAGCACGTCCTCTTTGTCAA...ACACACCCCAACCTGGGATTCTTCAACTTCAGAACTAGACATATTATTTCCAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS-3UTR GCA 90 bp | AAGAACTTAGGCAATTTAGGGGTGACTTGGGGAGGTAGAGTCCATTTCAGTGAAAAGGTGAAGATTTTCTaGTCGTTTTCACCATTTACA | + |
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Preference number: 4 (lower is better) Translates to: KNLGNLGVTWGGRVHFSEKVKIF*SFSPFT Trigger: TGTAAATGGTGAAAACGAGCAGAAAATCTTCACCTT...TTCACTGAAATGGACTCTACCTCCCCAAGTCACCCCTAAATTGCCTAAGTTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS-3UTR CCA 90 bp | ATTGGAAATAATATGTCTAGTTCTGAAGTTGAAGAATCCCAGGTTGGGGTGTGTGTCATGGACTTTTATTaGCTCCCAGAAGGTATGTTT | + |
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Preference number: 4 (lower is better) Translates to: IGNNMSSSEVEESQVGVCVMDFY*LPEGMF Trigger: AAACATACCTTCTGGGAGCCAATAAAAGTCCATGAC...ACACACCCCAACCTGGGATTCTTCAACTTCAGAACTAGACATATTATTTCCAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS-3UTR CAA 90 bp | GACCAGCCTCCATTGCTCTTTCTCCACCTTCAGGCTGGGAAGAGAAAGACTCAGTTTCCGGCCTGGGGGTaGTCTGCACATAGCTGGCTA | + |
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Preference number: 5 (lower is better) Translates to: DQPPLLFLHLQAGKRKTQFPAWG*SAHSWL Trigger: TAGCCAGCTATGTGCAGACAACCCCCAGGCCGGAAA...CTGAGTCTTTCTCTTCCCAGCCTGAAGGTGGAGAAAGAGCAATGGAGGCTGGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS GCA 90 bp | AAAGCCCAATATAACCAAGCCAAATGGCTTCAGATCCTCCTGGAGTaGATTCAGCTCAGGGTACTGGATTGTCAGACCGCAATAGGTAGC | + |
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Preference number: 5 (lower is better) Translates to: KAQYNQAKWLQILLE*IQLRVLDCQTAIGS Trigger: GCTACCTATTGCGGTCTGACAATCCAGTACCCTGAGCTGAATGCACTCCAGGAGGATCTGAAGCCATTTGGCTTGGTTATATTGGGCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS-3UTR CAA 90 bp | AGCTTAGGCTGGCCTGCCATTCATGTTCCTCCTGTCGCTGCCTGTCTGAAATGTTGTCATGGACTTTTATaGGCTCCCAGAAGGTATGTT | + |
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Preference number: 5 (lower is better) Translates to: SLGWPAIHVPPVAACLKCCHGLL*APRRYV Trigger: AACATACCTTCTGGGAGCCAATAAAAGTCCATGACA...ACATTTCAGACAGGCAGCGACAGGAGGAACATGAATGGCAGGCCAGCCTAAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS CCA 90 bp | TGCCTTTCACATCTTTGTAGCAGTCCATCTTCATCTTTTCCGGCCTaGGGGTTGTCTGCACATAGCTGGCTAGAAGAAGTGGAACAAGAT | + |
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Preference number: 5 (lower is better) Translates to: CLSHLCSSPSSSFPA*GLSAHSWLEEVEQD Trigger: ATCTTGTTCCACTTCTTCTAGCCAGCTATGTGCAGACAACCCCCAGGCCGGAAAAGATGAAGATGGACTGCTACAAAGATGTGAAAGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS-3UTR CAA 90 bp | GGCAATTTAGGGGTGACTTGGGGAGGTAGAGTCCATTTCAGTGAAGAGTGTGCTTTTCCTGCATACTGCTaGAATGGAATGTGTTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: GNLGVTWGGRVHFSEECAFPAYC*NGMCSF Trigger: GAAGGAACACATTCCATTCAAGCAGTATGCAGGAAA...AGCACACTCTTCACTGAAATGGACTCTACCTCCCCAAGTCACCCCTAAATTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS-3UTR CAA 90 bp | CAGGCTGGGAAGAGAAAGACTCAGAATGGCCAAGGGGACTCTTCCTTCAGATACGGAAGAATCTCTAAATaGTCTCCTGGTTCTTGCTTT | + |
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Preference number: 5 (lower is better) Translates to: QAGKRKTQNGQGDSSFRYGRISK*SPGSCF Trigger: AAAGCAAGAACCAGGAGACAATTTAGAGATTCTTCC...GTATCTGAAGGAAGAGTCCCCTTGGCCATTCTGAGTCTTTCTCTTCCCAGCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS-3UTR CAA 90 bp | AATAATATGTCTAGTTCTGAAGTTGAAGAATCCCAGGTTGGGGTGTGTATGTGGCCTGGACGAACATACTaGAGCCCAGGAAGAATCTCT | + |
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Preference number: 5 (lower is better) Translates to: NNMSSSEVEESQVGVCMWPGRTY*SPGRIS Trigger: AGAGATTCTTCCTGGGCTCAAGTATGTTCGTCCAGG...CCACATACACACCCCAACCTGGGATTCTTCAACTTCAGAACTAGACATATTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS CAA 72 bp | GTTTTGAAATGGCTCAGGTACGCCATGATGTCAGACTaGACAGTGCTGACAGGAGCCTGGTGGAACCAGCGC | + |
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Preference number: 6 (lower is better) Translates to: VLKWLRYAMMSD*TVLTGAWWNQR Trigger: GCGCTGGTTCCACCAGGCTCCTGTCAGCACTGTCAAGTCTGACATCATGGCGTACCTGAGCCATTTCAAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS GCA 72 bp | TATAACCAAGCCAAATGGCTTCAGATCCTCCTGGAGTaGATTCAGCTCAGGGTACTGGATTGTCAGACCGCA | + |
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Preference number: 6 (lower is better) Translates to: YNQAKWLQILLE*IQLRVLDCQTA Trigger: TGCGGTCTGACAATCCAGTACCCTGAGCTGAATGCACTCCAGGAGGATCTGAAGCCATTTGGCTTGGTTATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS CCA 72 bp | CATCTTTGTAGCAGTCCATCTTCATCTTTTCCGGCCTaGGGGTTGTCTGCACATAGCTGGCTAGAAGAAGTG | + |
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Preference number: 6 (lower is better) Translates to: HLCSSPSSSFPA*GLSAHSWLEEV Trigger: CACTTCTTCTAGCCAGCTATGTGCAGACAACCCCCAGGCCGGAAAAGATGAAGATGGACTGCTACAAAGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS CCA 72 bp | TCATCTTTTCCGGCCTGGGGGTTGTCTGCACATAGCTaGCTAGAAGAAGTGGAACAAGATAGAAGACTCTTA | + |
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Preference number: 6 (lower is better) Translates to: SSFPAWGLSAHS*LEEVEQDRRLL Trigger: TAAGAGTCTTCTATCTTGTTCCACTTCTTCTAGCCAGCTATGTGCAGACAACCCCCAGGCCGGAAAAGATGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS TCA 72 bp | AAGGTATGTTTGCTCATGACCACAGTCTCTGAGGGGTaGGGACAAGAACGCTTCAAGAAGGTGAAGATTTTC | + |
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Preference number: 6 (lower is better) Translates to: KVCLLMTTVSEG*GQERFKKVKIF Trigger: GAAAATCTTCACCTTCTTGAAGCGTTCTTGTCCTCACCCCTCAGAGACTGTGGTCATGAGCAAACATACCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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| CDS CAA 72 bp | AAGTTAGGTAAAAACCCTTTTCCTGGACGAACATACTaGAGCCCAGGAAGAATCTCTAAATTGTCTCCTGGT | + |
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Preference number: 6 (lower is better) Translates to: KLGKNPFPGRTY*SPGRISKLSPG Trigger: ACCAGGAGACAATTTAGAGATTCTTCCTGGGCTCAAGTATGTTCGTCCAGGAAAAGGGTTTTTACCTAACTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110491.9 |
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