RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GPT2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031700

Ensembl transcript IDs: ENSMUST00000034136.12, ENSMUST00000132932.8

Found 202 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGCTCCGAAAACTCCCTTGACTCGCTGCGTGGGTACCCAGGCTCCTaGGCGGGAGCTCCGGACAGCTTTCCCACTCTCACTGAAGAACGA +
Preference number: 1 (lower is better)
Translates to: GSENSLDSLRGYPGS*AGAPDSFPTLTEER
Trigger: TCGTTCTTCAGTGAGAGTGGGAAAGCTGTCCGGAGCTCCCGCGCAGGAGCCTGGGTACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CCA 90 bp TGCACCGCGTCGAGCTCAGAGATGACCGCGGAGTACAAGGGATACTaGGGGATGGGAATCATCACGCCGGTCCGTGACTTGCCACCACCG +
Preference number: 1 (lower is better)
Translates to: CTASSSEMTAEYKGY*GMGIITPVRDLPPP
Trigger: CGGTGGTGGCAAGTCACGGACCGGCGTGATGATTCCCATCCCCCAGTATCCCTTGTACTCCGCGGTCATCTCTGAGCTCGACGCGGTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR TCA 90 bp TCCACAGCCTTCACATCTTTCTCTCTCTGGCTCCGAAAACTCCCTTaGCTCGCTGCGTGGGTACCCAGGCTCCTGCGCGGGAGCTCCGGA +
Preference number: 1 (lower is better)
Translates to: STAFTSFSLWLRKLP*LAAWVPRLLRGSSG
Trigger: TCCGGAGCTCCCGCGCAGGAGCCTGGGTACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAAGATGTGAAGGCTGTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR GCA 90 bp CTTCACATCTTTCTCTCTCTGGCTCCGAAAACTCCCTTGACTCGCTaGGTGGGTACCCAGGCTCCTGCGCGGGAGCTCCGGACAGCTTTC +
Preference number: 1 (lower is better)
Translates to: LHIFLSLAPKTPLTR*VGTQAPARELRTAF
Trigger: GAAAGCTGTCCGGAGCTCCCGCGCAGGAGCCTGGGTACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAAGATGTGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR GCA 90 bp GCTGACCAGGTCCAGCCTGGCCAGGTTTCCACAGCCCCACCCACATaGTGCGACTCGAGTGATGCTGAAACCCAAAAGGCATGGCAACAG +
Preference number: 1 (lower is better)
Translates to: ADQVQPGQVSTAPPT*CDSSDAETQKAWQQ
Trigger: CTGTTGCCATGCCTTTTGGGTTTCAGCATCACTCGAGTCGCAGCATGTGGGTGGGGCTGTGGAAACCTGGCCAGGCTGGACCTGGTCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CCA 90 bp GCCTGCGCCTGCTCACATCCAAATGGAAACAATGTCTCTGAGGTGTaGCTGACCAGGTCCAGCCTGGCCAGGTTTCCACAGCCCCACCCA +
Preference number: 1 (lower is better)
Translates to: ACACSHPNGNNVSEV*LTRSSLARFPQPHP
Trigger: TGGGTGGGGCTGTGGAAACCTGGCCAGGCTGGACCTGGTCAGCCACACCTCAGAGACATTGTTTCCATTTGGATGTGAGCAGGCGCAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR GCA 90 bp GACCAGGTCCAGCCTGGCCAGGTTTCCACAGCCCCACCCACATGCTaGGACTCGAGTGATGCTGAAACCCAAAAGGCATGGCAACAGAAC +
Preference number: 1 (lower is better)
Translates to: DQVQPGQVSTAPPTC*DSSDAETQKAWQQN
Trigger: GTTCTGTTGCCATGCCTTTTGGGTTTCAGCATCACTCGAGTCGCAGCATGTGGGTGGGGCTGTGGAAACCTGGCCAGGCTGGACCTGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CCA 90 bp CAAAGGACTCCTCTCCTGGTTCCGGTGGATTCACAACAATGTCCATaGCGGCCTGTCCTGACACTGGCGGACAGAGGCGAACCGAGAGTA +
Preference number: 1 (lower is better)
Translates to: QRTPLLVPVDSQQCP*RPVLTLADRGEPRV
Trigger: TACTCTCGGTTCGCCTCTGTCCGCCAGTGTCAGGACAGGCCGCCATGGACATTGTTGTGAATCCACCGGAACCAGGAGAGGAGTCCTTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR CCA 90 bp GTGGGGTTTCCGGGGTTGATAATGCAGAGAACTTTAGGGTCACAGTaGTCTTTGGCTTGCCGCAATGCCCGCCGGAGCTCGTCCACATTC +
Preference number: 1 (lower is better)
Translates to: VGFPGLIMQRTLGSQ*SLACRNARRSSSTF
Trigger: GAATGTGGACGAGCTCCGGCGGGCATTGCGGCAAGCCAAAGACCACTGTGACCCTAAAGTTCTCTGCATTATCAACCCCGGAAACCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR TCA 90 bp GGAGTACAAGGGATACTGGGGGATGGGAATCATCACGCCGGTCCGTaGCTTGCCACCACCGGAGACCAGGAGCTTCAGGATTGTAGAAAT +
Preference number: 1 (lower is better)
Translates to: GVQGILGDGNHHAGP*LATTGDQELQDCRN
Trigger: ATTTCTACAATCCTGAAGCTCCTGGTCTCCGGTGGTGGCAAGTCACGGACCGGCGTGATGATTCCCATCCCCCAGTATCCCTTGTACTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR GCA 90 bp GGCCTTGGGAAAGGATTGCCTCCATTTTCAGCCCTTGCTTATCTCTaGTGCGACCAGCAGAGGGCGATGGTATGCATCAAGGCTCAGGCA +
Preference number: 1 (lower is better)
Translates to: GLGKGLPPFSALAYL*CDQQRAMVCIKAQA
Trigger: TGCCTGAGCCTTGATGCATACCATCGCCCTCTGCTGGTCGCAGCAGAGATAAGCAAGGGCTGAAAATGGAGGCAATCCTTTCCCAAGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR GCA 90 bp GGGTTGATAATGCAGAGAACTTTAGGGTCACAGTGGTCTTTGGCTTaGCGCAATGCCCGCCGGAGCTCGTCCACATTCAAAGCCCAGCAG +
Preference number: 1 (lower is better)
Translates to: GLIMQRTLGSQWSLA*RNARRSSSTFKAQQ
Trigger: CTGCTGGGCTTTGAATGTGGACGAGCTCCGGCGGGCATTGCGGCAAGCCAAAGACCACTGTGACCCTAAAGTTCTCTGCATTATCAACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR TCA 90 bp GTGCCTCCCCTGGACAGATGTCCTGGATTACATACGAAAGCAGGCTaGGCAAGCCATGGAAAGCAAGCCAGTAAGCAACGTTCCCCTGTG +
Preference number: 1 (lower is better)
Translates to: VPPLDRCPGLHTKAG*ASHGKQASKQRSPV
Trigger: CACAGGGGAACGTTGCTTACTGGCTTGCTTTCCATGGCTTGCTCAGCCTGCTTTCGTATGTAATCCAGGACATCTGTCCAGGGGAGGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR GCA 90 bp AATGCAGAGAACTTTAGGGTCACAGTGGTCTTTGGCTTGCCGCAATaGCCGCCGGAGCTCGTCCACATTCAAAGCCCAGCAGTTCTCTTC +
Preference number: 1 (lower is better)
Translates to: NAENFRVTVVFGLPQ*PPELVHIQSPAVLF
Trigger: GAAGAGAACTGCTGGGCTTTGAATGTGGACGAGCTCCGGCGGGCATTGCGGCAAGCCAAAGACCACTGTGACCCTAAAGTTCTCTGCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR CCA 90 bp GCTTTCCCACTCTCACTGAAGAACGAGACAGTTAAGAGACAAGCCTaGCCTGGCGCTCCCTATAGCACCTGTTTCCTTGGTGCGCACATG +
Preference number: 1 (lower is better)
Translates to: AFPLSLKNETVKRQA*PGAPYSTCFLGAHM
Trigger: CATGTGCGCACCAAGGAAACAGGTGCTATAGGGAGCGCCAGGCCAGGCTTGTCTCTTAACTGTCTCGTTCTTCAGTGAGAGTGGGAAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CCA 90 bp CTCTATGATGGCAACAGAAATCTAACTAAGGCACTGGCTTTGCCCTaGGCATTCAGAAGCATAGAGGGTGGCAGGGGCAGGAAGCAGCCG +
Preference number: 1 (lower is better)
Translates to: LYDGNRNLTKALALP*AFRSIEGGRGRKQP
Trigger: CGGCTGCTTCCTGCCCCTGCCACCCTCTATGCTTCTGAATGCCCAGGGCAAAGCCAGTGCCTTAGTTAGATTTCTGTTGCCATCATAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR GCA 90 bp GCCTTGGCAGGGATGAGAATCCGAGGGAACGCATACATAGCTCCTTaGAAGGGGTTGCACTGGATCCCTGGGACTTGGTTAAACAGATCT +
Preference number: 1 (lower is better)
Translates to: ALAGMRIRGNAYIAP*KGLHWIPGTWLNRS
Trigger: AGATCTGTTTAACCAAGTCCCAGGGATCCAGTGCAACCCCTTGCAAGGAGCTATGTATGCGTTCCCTCGGATTCTCATCCCTGCCAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR CCA 90 bp TTTAAAGTCGCACCCCCTGCAGTGTGGGACTATAGGGCAGGAGGCTaGTTTCAGCCTTACTCCACAGCCTTCACATCTTTCTCTCTCTGG +
Preference number: 1 (lower is better)
Translates to: FKVAPPAVWDYRAGG*FQPYSTAFTSFSLW
Trigger: CCAGAGAGAGAAAGATGTGAAGGCTGTGGAGTAAGGCTGAAACCAGCCTCCTGCCCTATAGTCCCACACTGCAGGGGGTGCGACTTTAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR GCA 90 bp CAACTTTCAGGGCCTTGGGAAAGGATTGCCTCCATTTTCAGCCCTTaGTTATCTCTGCTGCGACCAGCAGAGGGCGATGGTATGCATCAA +
Preference number: 1 (lower is better)
Translates to: QLSGPWERIASIFSP*LSLLRPAEGDGMHQ
Trigger: TTGATGCATACCATCGCCCTCTGCTGGTCGCAGCAGAGATAAGCAAGGGCTGAAAATGGAGGCAATCCTTTCCCAAGGCCCTGAAAGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR GCA 90 bp ACCCCTGTCCTACTACTGACTTCGATATTCTTGCCTGTGATGCGCTaGCTATCTTCAGACCAGAATGGTCAGCTTTCTCTGAGTTCTCAC +
Preference number: 1 (lower is better)
Translates to: TPVLLLTSIFLPVMR*LSSDQNGQLSLSSH
Trigger: GTGAGAACTCAGAGAAAGCTGACCATTCTGGTCTGAAGATAGGCAGCGCATCACAGGCAAGAATATCGAAGTCAGTAGTAGGACAGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CCA 90 bp TTCGATATTCTTGCCTGTGATGCGCTGCCTATCTTCAGACCAGAATaGTCAGCTTTCTCTGAGTTCTCACTAGACTTGCAGGCTTACTGT +
Preference number: 1 (lower is better)
Translates to: FDILACDALPIFRPE*SAFSEFSLDLQAYC
Trigger: ACAGTAAGCCTGCAAGTCTAGTGAGAACTCAGAGAAAGCTGACCATTCTGGTCTGAAGATAGGCAGCGCATCACAGGCAAGAATATCGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR TCA 90 bp AAAGACATTTTCAGTTCCCACAAAAGTAACCTCTCTCTCCAGTCCTaGCAACACTGTTCCCACCTCAATCACACTCTTGGTGACGTGATG +
Preference number: 1 (lower is better)
Translates to: KDIFSSHKSNLSLQS*QHCSHLNHTLGDVM
Trigger: CATCACGTCACCAAGAGTGTGATTGAGGTGGGAACAGTGTTGTCAGGACTGGAGAGAGAGGTTACTTTTGTGGGAACTGAAAATGTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR TCA 90 bp TACAAGAGACACTGCTGCAGGAGCTGTGAAGAAATAACTGTGTTATaGTCAGAGTTGGCCTCTGTGAGGAACATTTGCCTAACAACTCTG +
Preference number: 1 (lower is better)
Translates to: YKRHCCRSCEEITVL*SELASVRNICLTTL
Trigger: CAGAGTTGTTAGGCAAATGTTCCTCACAGAGGCCAACTCTGATCATAACACAGTTATTTCTTCACAGCTCCTGCAGCAGTGTCTCTTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR TCA 90 bp ACCAGGCACCGTGATCAGTTAGTTACAAATGAGCCAAATTCAGTTTaGAACCATGAAAAACAACTTTCAGGGCCTTGGGAAAGGATTGCC +
Preference number: 1 (lower is better)
Translates to: TRHRDQLVTNEPNSV*NHEKQLSGPWERIA
Trigger: GGCAATCCTTTCCCAAGGCCCTGAAAGTTGTTTTTCATGGTTTCAAACTGAATTTGGCTCATTTGTAACTAACTGATCACGGTGCCTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR TCA 90 bp CACCTGTTCTGTGCCAGGCTGTCCTGGTTGGGATTTCTGTCAAATTaGCACAAACTAGATTTATCTGGGAAGAATTTCTCCCAAGAAACT +
Preference number: 1 (lower is better)
Translates to: HLFCARLSWLGFLSN*HKLDLSGKNFSQET
Trigger: AGTTTCTTGGGAGAAATTCTTCCCAGATAAATCTAGTTTGTGTCAATTTGACAGAAATCCCAACCAGGACAGCCTGGCACAGAACAGGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR CCA 90 bp CTGTCCAAAAGGCTACATTTTCACACTGGTCAGGGTTTGATTTCATaGATCTCACTATTGATTTCTGGATTCCCAGCCCTTATCATGTCA +
Preference number: 1 (lower is better)
Translates to: LSKRLHFHTGQGLIS*ISLLISGFPALIMS
Trigger: TGACATGATAAGGGCTGGGAATCCAGAAATCAATAGTGAGATCCATGAAATCAAACCCTGACCAGTGTGAAAATGTAGCCTTTTGGACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR TCA 90 bp ATGTCAAGTCACATATTTCCCAACACCTGCTTGTTTCTCCAGATCTaGCATAATCTCATTTCCATGTACTCTGGCTGCTTAAGACCCAAA +
Preference number: 1 (lower is better)
Translates to: MSSHIFPNTCLFLQI*HNLISMYSGCLRPK
Trigger: TTTGGGTCTTAAGCAGCCAGAGTACATGGAAATGAGATTATGTCAGATCTGGAGAAACAAGCAGGTGTTGGGAAATATGTGACTTGACAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 90 bp CTCCACAGCCTTCACATCTTTCTCTCTCTGGCTCCGAAAACTCCCTaGACTCGCTGCGTGGGTACCCAGGCTCCTGCGCGGGAGCTCCGG +
Preference number: 2 (lower is better)
Translates to: LHSLHIFLSLAPKTP*TRCVGTQAPARELR
Trigger: CCGGAGCTCCCGCGCAGGAGCCTGGGTACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAAGATGTGAAGGCTGTGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR-3UTR TCA 90 bp GGTCTTTGGCTTGCCGCAATGCCCGCCGGAGCTCGTCCACATTCAAAGCCCAGCCGGTACACGGGAAGGTaGGTATGCATCTGTACACAC +
Preference number: 2 (lower is better)
Translates to: GLWLAAMPAGARPHSKPSRYTGR*VCICTH
Trigger: GTGTGTACAGATGCATACTCACCTTCCCGTGTACCG...GCTGGGCTTTGAATGTGGACGAGCTCCGGCGGGCATTGCGGCAAGCCAAAGACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR CCA 90 bp TTCACAACAATGTCCATGGCGGCCTGTCCTGACACTGGCGGACAGAGGCGAACCCGAGCTCCACGTTGCTaGAGTACTCGTGCCCCATCT +
Preference number: 2 (lower is better)
Translates to: FTTMSMAACPDTGGQRRTRAPRC*STRAPS
Trigger: AGATGGGGCACGAGTACTCCAGCAACGTGGAGCTCG...GGTTCGCCTCTGTCCGCCAGTGTCAGGACAGGCCGCCATGGACATTGTTGTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR TCA 90 bp CTTCACATCTTTCTCTCTCTGGCTCCGAAAACTCCCTTGACTCGCTGCGTGGGTCGTTGGTGGCCTGTCTaGGGTCTGAGGCAGAGTCCT +
Preference number: 2 (lower is better)
Translates to: LHIFLSLAPKTPLTRCVGRWWPV*GLRQSP
Trigger: AGGACTCTGCCTCAGACCTCAGACAGGCCACCAACG...ACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAAGATGTGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR-3UTR TCA 90 bp GCTCCTGCGCGGGAGCTCCGGACAGCTTTCCCACTCTCACTGAAGAACGAGACACCCCTGTCCTACTACTaGCTTCGATATTCTTGCCTG +
Preference number: 2 (lower is better)
Translates to: APARELRTAFPLSLKNETPLSYY*LRYSCL
Trigger: CAGGCAAGAATATCGAAGTCAGTAGTAGGACAGGGG...TGTCTCGTTCTTCAGTGAGAGTGGGAAAGCTGTCCGGAGCTCCCGCGCAGGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR-3UTR GCA 90 bp GCTCCTGCGCGGGAGCTCCGGACAGCTTTCCCACTCTCACTGAAGAACGAGACACTGAATCAGATTGCATaGGCTCCTTCTTGGCAGCCA +
Preference number: 2 (lower is better)
Translates to: APARELRTAFPLSLKNETLNQIA*APSWQP
Trigger: TGGCTGCCAAGAAGGAGCGCATGCAATCTGATTCAG...TGTCTCGTTCTTCAGTGAGAGTGGGAAAGCTGTCCGGAGCTCCCGCGCAGGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 90 bp TACAAGGGATACTGGGGGATGGGAATCATCACGCCGGTCCGTGACTaGCCACCACCGGAGACCAGGAGCTTCAGGATTGTAGAAATACCG +
Preference number: 2 (lower is better)
Translates to: YKGYWGMGIITPVRD*PPPETRSFRIVEIP
Trigger: CGGTATTTCTACAATCCTGAAGCTCCTGGTCTCCGGTGGTGGCAAGTCACGGACCGGCGTGATGATTCCCATCCCCCAGTATCCCTTGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR CAA 90 bp GGGGTTGATAATGCAGAGAACTTTAGGGTCACAGTGGTCTTTGGCTaGCCGCAATGCCCGCCGGAGCTCGTCCACATTCAAAGCCCAGCA +
Preference number: 2 (lower is better)
Translates to: GVDNAENFRVTVVFG*PQCPPELVHIQSPA
Trigger: TGCTGGGCTTTGAATGTGGACGAGCTCCGGCGGGCATTGCGGCAAGCCAAAGACCACTGTGACCCTAAAGTTCTCTGCATTATCAACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR CCA 90 bp CGCGTCGAGCTCAGAGATGACCGCGGAGTACAAGGGATACTGGGGGATGGGAATCAGGTAAATGTTGTCTaGGTCTGCAGGCACACCATC +
Preference number: 2 (lower is better)
Translates to: RVELRDDRGVQGILGDGNQVNVV*VCRHTI
Trigger: GATGGTGTGCCTGCAGACCCAGACAACATTTACCTG...ATTCCCATCCCCCAGTATCCCTTGTACTCCGCGGTCATCTCTGAGCTCGACGCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR CCA 90 bp AGCACCCCCATTTCCTTATGTAGTGACAGAGGGTCTGAGCCTGCCATGATGAGAGGTCACAGTGGTCTTTaGCTTGCCGCAATGCCCGCC +
Preference number: 2 (lower is better)
Translates to: STPISLCSDRGSEPAMMRGHSGL*LAAMPA
Trigger: GGCGGGCATTGCGGCAAGCCAAAGACCACTGTGACC...TCTCATCATGGCAGGCTCAGACCCTCTGTCACTACATAAGGAAATGGGGGTGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR CCA 90 bp GCCAAGGAGCTACACCTGTTCTGTGCCAGGCTGTCCTGGTTGGGATTTCTGTCAAGTAGCTTCACCAGCTaGCCTTTGATCTCGGGGTGC +
Preference number: 2 (lower is better)
Translates to: AKELHLFCARLSWLGFLSSSFTS*PLISGC
Trigger: GCACCCCGAGATCAAAGGCCAGCTGGTGAAGCTACT...TGACAGAAATCCCAACCAGGACAGCCTGGCACAGAACAGGTGTAGCTCCTTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR GCA 90 bp TCTAAAGCAAGAACTCAAGGGACCAACACCAACCACCCCCAAAAGAAAGTGTCACGCCGGTCCGTGACTTaGCACCACCGGAGACCAGGA +
Preference number: 2 (lower is better)
Translates to: SKARTQGTNTNHPQKKVSRRSVT*HHRRPG
Trigger: TCCTGGTCTCCGGTGGTGGCAAGTCACGGACCGGCG...TGACACTTTCTTTTGGGGGTGGTTGGTGTTGGTCCCTTGAGTTCTTGCTTTAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR TCA 90 bp TTTCTCTCTCTGGCTCCGAAAACTCCCTTGACTCGCTGCGTGGGTACCCAGGCTCATGGATCTCACTATTaGTTTCTGGATTCCCAGCCC +
Preference number: 2 (lower is better)
Translates to: FLSLAPKTPLTRCVGTQAHGSHY*FLDSQP
Trigger: GGGCTGGGAATCCAGAAATCAATAGTGAGATCCATG...AGCCTGGGTACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR-3UTR TCA 90 bp CACCCACATGCTGCGACTCGAGTGATGCTGAAACCCAAAAGGCATGGCAACAGAGTGGCTGCTACTTTGTaGCACACAGGGAAGCCTGAT +
Preference number: 2 (lower is better)
Translates to: HPHAATRVMLKPKRHGNRVAATL*HTGKPD
Trigger: ATCAGGCTTCCCTGTGTGTCACAAAGTAGCAGCCAC...TCTGTTGCCATGCCTTTTGGGTTTCAGCATCACTCGAGTCGCAGCATGTGGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR-3UTR GCA 90 bp TACACCTGTTCTGTGCCAGGCTGTCCTGGTTGGGATTTCTGTCAAATTGACACAAGGCGAGCTCCACGTTaGTGGAGTACTCGTGCCCCA +
Preference number: 2 (lower is better)
Translates to: YTCSVPGCPGWDFCQIDTRRAPR*WSTRAP
Trigger: TGGGGCACGAGTACTCCAGCAACGTGGAGCTCGCCT...TGTGTCAATTTGACAGAAATCCCAACCAGGACAGCCTGGCACAGAACAGGTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR GCA 90 bp GCCAAGGAGCTACACCTGTTCTGTGCCAGGCTGTCCTGGTTGGGATTTCTGTCACCTCCAGGAGCTTCATaGAGTAGAACATGTCTGGAG +
Preference number: 2 (lower is better)
Translates to: AKELHLFCARLSWLGFLSPPGAS*SRTCLE
Trigger: CTCCAGACATGTTCTACTGCATGAAGCTCCTGGAGG...TGACAGAAATCCCAACCAGGACAGCCTGGCACAGAACAGGTGTAGCTCCTTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR CCA 90 bp CAGCTGGCCTTTGATCTCGGGGTGCAAATTGATCACCTCCATGTAGCCCCCTCTGTGGAATCTGCAGTCTaGAGAGTACACGTTGTCCTG +
Preference number: 2 (lower is better)
Translates to: QLAFDLGVQIDHLHVAPSVESAV*RVHVVL
Trigger: CAGGACAACGTGTACTCTCCAGACTGCAGATTCCAC...AGAGGGGGCTACATGGAGGTGATCAATTTGCACCCCGAGATCAAAGGCCAGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR CCA 90 bp TACATACGAAAGCAGGCTGAGCAAGCCATGGAAAGCAAGCCAGTAAGCAACGTTCAGAAGCATAGAGGGTaGCAGGGGCAGGAAGCAGCC +
Preference number: 2 (lower is better)
Translates to: YIRKQAEQAMESKPVSNVQKHRG*QGQEAA
Trigger: GGCTGCTTCCTGCCCCTGCCACCCTCTATGCTTCTG...AACGTTGCTTACTGGCTTGCTTTCCATGGCTTGCTCAGCCTGCTTTCGTATGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR CAA 90 bp GGGATGAGAATCCGAGGGAACGCATACATAGCTCCTTGCAAGGGGTaGCACTGGATCCCTGGGACTTGGTTAAACAGATCTTCTGTCAGC +
Preference number: 2 (lower is better)
Translates to: GMRIRGNAYIAPCKG*HWIPGTWLNRSSVS
Trigger: GCTGACAGAAGATCTGTTTAACCAAGTCCCAGGGATCCAGTGCAACCCCTTGCAAGGAGCTATGTATGCGTTCCCTCGGATTCTCATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR TCA 90 bp CTTCACATCTTTCTCTCTCTGGCTCCGAAAACTCCCTTGACTCGCTGCGTGGGTAGGGAGGCAGGAAACTaGTGTGAAGAGAGCACTGAA +
Preference number: 2 (lower is better)
Translates to: LHIFLSLAPKTPLTRCVGREAGN*CEESTE
Trigger: TTCAGTGCTCTCTTCACATCAGTTTCCTGCCTCCCT...ACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAAGATGTGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR-3UTR GCA 90 bp CCTGATGAGATAGGATGCTGTCCGCAGATGAGGGAGGGAGGCAGGAAACTGATGTCCATGTACTCTGGCTaGTTAAGACCCAAAGGAACT +
Preference number: 2 (lower is better)
Translates to: PDEIGCCPQMREGGRKLMSMYSG*LRPKGT
Trigger: AGTTCCTTTGGGTCTTAAGCAGCCAGAGTACATGGA...CATCAGTTTCCTGCCTCCCTCCCTCATCTGCGGACAGCATCCTATCTCATCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR-3UTR GCA 90 bp CCCACAAAAGTAACCTCTCTCTCCAGTCCTGACAACACTGTTCCCACCTCAATCCTAAGGCACTGGCTTTaGCCTGGGCATTCAGAAGCA +
Preference number: 2 (lower is better)
Translates to: PTKVTSLSSPDNTVPTSILRHWL*PGHSEA
Trigger: TGCTTCTGAATGCCCAGGGCAAAGCCAGTGCCTTAG...GATTGAGGTGGGAACAGTGTTGTCAGGACTGGAGAGAGAGGTTACTTTTGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR CCA 90 bp CTTCACATCTTTCTCTCTCTGGCTCCGAAAACTCCCTTGACTCGCTGCGTGGGTCAACTTTCAGGGCCTTaGGAAAGGATTGCCTCCATT +
Preference number: 2 (lower is better)
Translates to: LHIFLSLAPKTPLTRCVGQLSGP*ERIASI
Trigger: AATGGAGGCAATCCTTTCCCAAGGCCCTGAAAGTTG...ACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAAGATGTGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR-3UTR TCA 90 bp CACCCACATGCTGCGACTCGAGTGATGCTGAAACCCAAAAGGCATGGCAACAGAATGGTCAGCTTTCTCTaGGTTCTCACTAGACTTGCA +
Preference number: 2 (lower is better)
Translates to: HPHAATRVMLKPKRHGNRMVSFL*VLTRLA
Trigger: TGCAAGTCTAGTGAGAACTCAGAGAAAGCTGACCAT...TCTGTTGCCATGCCTTTTGGGTTTCAGCATCACTCGAGTCGCAGCATGTGGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR-3UTR GCA 90 bp TTGAAGTTCTGTTTTAAAGTCGCACCCCCTGCAGTGTGGGACTATAGGGCAGGAGGGCCTGTGAGACATTaGAAAACCACTGTTTGCTCG +
Preference number: 2 (lower is better)
Translates to: LKFCFKVAPPAVWDYRAGGPVRH*KTTVCS
Trigger: CGAGCAAACAGTGGTTTTGCAATGTCTCACAGGCCC...TCCTGCCCTATAGTCCCACACTGCAGGGGGTGCGACTTTAAAACAGAACTTCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR-3UTR CCA 90 bp ACCTCTCTCTCCAGTCCTGACAACACTGTTCCCACCTCAATCACACTCTTGGTGTGTGCCAGGCTGTCCTaGTTGGGATTTCTGTCAAAT +
Preference number: 2 (lower is better)
Translates to: TSLSSPDNTVPTSITLLVCARLS*LGFLSN
Trigger: ATTTGACAGAAATCCCAACCAGGACAGCCTGGCACA...CACCAAGAGTGTGATTGAGGTGGGAACAGTGTTGTCAGGACTGGAGAGAGAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR TCA 90 bp TTGGCAGGGATGAGAATCCGAGGGAACGCATACATAGCTCCTTGCAAGGGGTTGATTCTTTTTCCCTGCTaGATTGCTCAAAGGACTCCT +
Preference number: 2 (lower is better)
Translates to: LAGMRIRGNAYIAPCKGLILFPC*IAQRTP
Trigger: AGGAGTCCTTTGAGCAATTCAGCAGGGAAAAAGAAT...CAACCCCTTGCAAGGAGCTATGTATGCGTTCCCTCGGATTCTCATCCCTGCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR GCA 90 bp CCCACAAAAGTAACCTCTCTCTCCAGTCCTGACAACACTGTTCCCACCTCAATCCTTCTATGCACTTTCTaGTTTGTACCTGGCCTGTGG +
Preference number: 2 (lower is better)
Translates to: PTKVTSLSSPDNTVPTSILLCTF*FVPGLW
Trigger: CCACAGGCCAGGTACAAAGCAGAAAGTGCATAGAAG...GATTGAGGTGGGAACAGTGTTGTCAGGACTGGAGAGAGAGGTTACTTTTGTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR CCA 90 bp CCTGATGAGATAGGATGCTGTCCGCAGATGAGGGAGGGAGGCAGGAAACTGATGGCTACATTTTCACACTaGTCAGGGTTTGATTTCATG +
Preference number: 2 (lower is better)
Translates to: PDEIGCCPQMREGGRKLMATFSH*SGFDFM
Trigger: CATGAAATCAAACCCTGACCAGTGTGAAAATGTAGC...CATCAGTTTCCTGCCTCCCTCCCTCATCTGCGGACAGCATCCTATCTCATCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 90 bp CCTGGTGATAAAGGCTGCCACATCTTCACGGATACAGTTAACGCCTaGGCTAGCACTGTAAGATCCAAAAGATGGCATGATCGATCACTG +
Preference number: 2 (lower is better)
Translates to: PGDKGCHIFTDTVNA*ASTVRSKRWHDRSL
Trigger: CAGTGATCGATCATGCCATCTTTTGGATCTTACAGTGCTAGCCAAGGCGTTAACTGTATCCGTGAAGATGTGGCAGCCTTTATCACCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR TCA 90 bp AAGCAAGAACTCAAGGGACCAACACCAACCACCCCCAAAAGAAAGTGTCACACCTCTTCCCAGGCAAAGTaGATCACATCTTCTATGCAC +
Preference number: 2 (lower is better)
Translates to: KQELKGPTPTTPKRKCHTSSQAK*ITSSMH
Trigger: GTGCATAGAAGATGTGATTCACTTTGCCTGGGAAGA...GGTGTGACACTTTCTTTTGGGGGTGGTTGGTGTTGGTCCCTTGAGTTCTTGCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR GCA 90 bp GCCAAGGAGCTACACCTGTTCTGTGCCAGGCTGTCCTGGTTGGGATTTCTGTCAGAATCACATCTTCTATaGACTTTCTGCTTTGTACCT +
Preference number: 2 (lower is better)
Translates to: AKELHLFCARLSWLGFLSESHLL*TFCFVP
Trigger: AGGTACAAAGCAGAAAGTGCATAGAAGATGTGATTC...TGACAGAAATCCCAACCAGGACAGCCTGGCACAGAACAGGTGTAGCTCCTTGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR CCA 90 bp TTTCTCTCTCTGGCTCCGAAAACTCCCTTGACTCGCTGCGTGGGTACCCAGGCTCAGGGTTTGATTTCATaGATCTCACTATTGATTTCT +
Preference number: 2 (lower is better)
Translates to: FLSLAPKTPLTRCVGTQAQGLIS*ISLLIS
Trigger: AGAAATCAATAGTGAGATCCATGAAATCAAACCCTG...AGCCTGGGTACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR-3UTR CCA 90 bp TACATACGAAAGCAGGCTGAGCAAGCCATGGAAAGCAAGCCAGTAAGCAACGTTGTTGCACTGGATCCCTaGGACTTGGTTAAACAGATC +
Preference number: 2 (lower is better)
Translates to: YIRKQAEQAMESKPVSNVVALDP*DLVKQI
Trigger: GATCTGTTTAACCAAGTCCCAGGGATCCAGTGCAAC...AACGTTGCTTACTGGCTTGCTTTCCATGGCTTGCTCAGCCTGCTTTCGTATGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR TCA 90 bp AAAAACAACTTTCAGGGCCTTGGGAAAGGATTGCCTCCATTTTCAGCCCTTGCTCAAAAACAGGGCCTGTaGGACATTGCAAAACCACTG +
Preference number: 2 (lower is better)
Translates to: KNNFQGLGKGLPPFSALAQKQGL*DIAKPL
Trigger: CAGTGGTTTTGCAATGTCTCACAGGCCCTGTTTTTG...AGCAAGGGCTGAAAATGGAGGCAATCCTTTCCCAAGGCCCTGAAAGTTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR-3UTR CCA 90 bp CTTCACATCTTTCTCTCTCTGGCTCCGAAAACTCCCTTGACTCGCTGCGTGGGTAATATATTTGCTTGGTaGCTGCTACTTTGTGACACA +
Preference number: 2 (lower is better)
Translates to: LHIFLSLAPKTPLTRCVGNIFAW*LLLCDT
Trigger: TGTGTCACAAAGTAGCAGCCACCAAGCAAATATATT...ACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAAGATGTGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 90 bp ATCTTCAGACCAGAATGGTCAGCTTTCTCTGAGTTCTCACTAGACTaGCAGGCTTACTGTCCAAAAGGCTACATTTTCACACTGGTCAGG +
Preference number: 2 (lower is better)
Translates to: IFRPEWSAFSEFSLD*QAYCPKGYIFTLVR
Trigger: CCTGACCAGTGTGAAAATGTAGCCTTTTGGACAGTAAGCCTGCAAGTCTAGTGAGAACTCAGAGAAAGCTGACCATTCTGGTCTGAAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR-3UTR TCA 90 bp AGGCAGTTAGTCCATCTGAGGACACAGCCCATATCTTTGACTGTTCAAAGACTTAGAAAGTGTCACACCTaGAGTGGTAAGTGCCTTCTC +
Preference number: 2 (lower is better)
Translates to: RQLVHLRTQPISLTVQRLRKCHT*SGKCLL
Trigger: GAGAAGGCACTTACCACTTCAGGTGTGACACTTTCT...AAGTCTTTGAACAGTCAAAGATATGGGCTGTGTCCTCAGATGGACTAACTGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR CCA 90 bp TACACCTGTTCTGTGCCAGGCTGTCCTGGTTGGGATTTCTGTCAAATTGACACAACTTTCTTAAACGAGTaGAATCTGCAGTCTGGAGAG +
Preference number: 2 (lower is better)
Translates to: YTCSVPGCPGWDFCQIDTTFLNE*NLQSGE
Trigger: CTCTCCAGACTGCAGATTCCACTCGTTTAAGAAAGT...TGTGTCAATTTGACAGAAATCCCAACCAGGACAGCCTGGCACAGAACAGGTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR CAA 90 bp GCAGGCTTACTGTCCAAAAGGCTACATTTTCACACTGGTCAGGGTTaGATTTCATGGATCTCACTATTGATTTCTGGATTCCCAGCCCTT +
Preference number: 2 (lower is better)
Translates to: AGLLSKRLHFHTGQG*ISWISLLISGFPAL
Trigger: AAGGGCTGGGAATCCAGAAATCAATAGTGAGATCCATGAAATCAAACCCTGACCAGTGTGAAAATGTAGCCTTTTGGACAGTAAGCCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 90 bp GGCTACTTCCTTCACAGTAATGCAATGCTTGTGAGTGTTAACAACTaGAAGTTCTGTTTTAAAGTCGCACCCCCTGCAGTGTGGGACTAT +
Preference number: 2 (lower is better)
Translates to: GYFLHSNAMLVSVNN*KFCFKVAPPAVWDY
Trigger: ATAGTCCCACACTGCAGGGGGTGCGACTTTAAAACAGAACTTCAAGTTGTTAACACTCACAAGCATTGCATTACTGTGAAGGAAGTAGCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 90 bp ATCCCTGGGACTTGGTTAAACAGATCTTCTGTCAGCTTTGCTTTTTaGGCCAGATTACCAAGGACGAATTCTTTTTCCCTGCTGAATTGC +
Preference number: 2 (lower is better)
Translates to: IPGTWLNRSSVSFAF*ARLPRTNSFSLLNC
Trigger: GCAATTCAGCAGGGAAAAAGAATTCGTCCTTGGTAATCTGGCCAAAAAAGCAAAGCTGACAGAAGATCTGTTTAACCAAGTCCCAGGGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR TCA 90 bp ATGAAAAACAACTTTCAGGGCCTTGGGAAAGGATTGCCTCCATTTTCAGCCCTTACACTGGTCAGGGTTTaGTTTCATGGATCTCACTAT +
Preference number: 2 (lower is better)
Translates to: MKNNFQGLGKGLPPFSALTLVRV*FHGSHY
Trigger: ATAGTGAGATCCATGAAATCAAACCCTGACCAGTGT...AAGGGCTGAAAATGGAGGCAATCCTTTCCCAAGGCCCTGAAAGTTGTTTTTCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 90 bp AGAAATAACTGTGTTATGATCAGAGTTGGCCTCTGTGAGGAACATTaGCCTAACAACTCTGGGAATCCATGTATCCATCTGTACAGAGCT +
Preference number: 2 (lower is better)
Translates to: RNNCVMIRVGLCEEH*PNNSGNPCIHLYRA
Trigger: AGCTCTGTACAGATGGATACATGGATTCCCAGAGTTGTTAGGCAAATGTTCCTCACAGAGGCCAACTCTGATCATAACACAGTTATTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR CAA 90 bp CTACATTTTCACACTGGTCAGGGTTTGATTTCATGGATCTCACTATaGATTTCTGGATTCCCAGCCCTTATCATGTCAAGTCACATATTT +
Preference number: 2 (lower is better)
Translates to: LHFHTGQGLISWISL*ISGFPALIMSSHIF
Trigger: AAATATGTGACTTGACATGATAAGGGCTGGGAATCCAGAAATCAATAGTGAGATCCATGAAATCAAACCCTGACCAGTGTGAAAATGTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR-3UTR CCA 90 bp GATCTCACTATTGATTTCTGGATTCCCAGCCCTTATCATGTCAAGTCACATATTAGAAAGAAGTCTCCTTaGGGAAATGAAGATGAACAG +
Preference number: 2 (lower is better)
Translates to: DLTIDFWIPSPYHVKSHIRKKSP*GNEDEQ
Trigger: CTGTTCATCTTCATTTCCCCAAGGAGACTTCTTTCT...AATATGTGACTTGACATGATAAGGGCTGGGAATCCAGAAATCAATAGTGAGATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR GCA 72 bp AACTCCCTTGACTCGCTGCGTGGGTACCCAGGCTCCTaGGCGGGAGCTCCGGACAGCTTTCCCACTCTCACT +
Preference number: 3 (lower is better)
Translates to: NSLDSLRGYPGS*AGAPDSFPTLT
Trigger: AGTGAGAGTGGGAAAGCTGTCCGGAGCTCCCGCGCAGGAGCCTGGGTACCCACGCAGCGAGTCAAGGGAGTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CCA 72 bp ACTGGCTTTGCCCTGGGCATTCAGAAGCATAGAGGGTaGCAGGGGCAGGAAGCAGCCGAGAGGCGGGACAGT +
Preference number: 3 (lower is better)
Translates to: TGFALGIQKHRG*QGQEAAERRDS
Trigger: ACTGTCCCGCCTCTCGGCTGCTTCCTGCCCCTGCCACCCTCTATGCTTCTGAATGCCCAGGGCAAAGCCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR TCA 72 bp GGGATACTGGGGGATGGGAATCATCACGCCGGTCCGTaGCTTGCCACCACCGGAGACCAGGAGCTTCAGGAT +
Preference number: 3 (lower is better)
Translates to: GILGDGNHHAGP*LATTGDQELQD
Trigger: ATCCTGAAGCTCCTGGTCTCCGGTGGTGGCAAGTCACGGACCGGCGTGATGATTCCCATCCCCCAGTATCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR TCA 72 bp TTCACATCTTTCTCTCTCTGGCTCCGAAAACTCCCTTaGCTCGCTGCGTGGGTACCCAGGCTCCTGCGCGGG +
Preference number: 3 (lower is better)
Translates to: FTSFSLWLRKLP*LAAWVPRLLRG
Trigger: CCCGCGCAGGAGCCTGGGTACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAAGATGTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR GCA 72 bp CAGCCTGGCCAGGTTTCCACAGCCCCACCCACATGCTaGGACTCGAGTGATGCTGAAACCCAAAAGGCATGG +
Preference number: 3 (lower is better)
Translates to: QPGQVSTAPPTC*DSSDAETQKAW
Trigger: CCATGCCTTTTGGGTTTCAGCATCACTCGAGTCGCAGCATGTGGGTGGGGCTGTGGAAACCTGGCCAGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR GCA 72 bp GTCCAGCCTGGCCAGGTTTCCACAGCCCCACCCACATaGTGCGACTCGAGTGATGCTGAAACCCAAAAGGCA +
Preference number: 3 (lower is better)
Translates to: VQPGQVSTAPPT*CDSSDAETQKA
Trigger: TGCCTTTTGGGTTTCAGCATCACTCGAGTCGCAGCATGTGGGTGGGGCTGTGGAAACCTGGCCAGGCTGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CCA 72 bp CCTCTCCTGGTTCCGGTGGATTCACAACAATGTCCATaGCGGCCTGTCCTGACACTGGCGGACAGAGGCGAA +
Preference number: 3 (lower is better)
Translates to: PLLVPVDSQQCP*RPVLTLADRGE
Trigger: TTCGCCTCTGTCCGCCAGTGTCAGGACAGGCCGCCATGGACATTGTTGTGAATCCACCGGAACCAGGAGAGG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR GCA 72 bp CCTCACACTTGCGTACGATCTACCACTGGGCTACCCTaGCACCCCAGCTCTCTGTTTCAGATGGACCGTGGA +
Preference number: 3 (lower is better)
Translates to: PHTCVRSTTGLP*HPSSLFQMDRG
Trigger: TCCACGGTCCATCTGAAACAGAGAGCTGGGGTGGCAGGGTAGCCCAGTGGTAGATCGTACGCAAGTGTGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR CCA 72 bp TCGAGCTCAGAGATGACCGCGGAGTACAAGGGATACTaGGGGATGGGAATCATCACGCCGGTCCGTGACTTG +
Preference number: 3 (lower is better)
Translates to: SSSEMTAEYKGY*GMGIITPVRDL
Trigger: CAAGTCACGGACCGGCGTGATGATTCCCATCCCCCAGTATCCCTTGTACTCCGCGGTCATCTCTGAGCTCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR CCA 72 bp CCGGGGTTGATAATGCAGAGAACTTTAGGGTCACAGTaGTCTTTGGCTTGCCGCAATGCCCGCCGGAGCTCG +
Preference number: 3 (lower is better)
Translates to: PGLIMQRTLGSQ*SLACRNARRSS
Trigger: CGAGCTCCGGCGGGCATTGCGGCAAGCCAAAGACCACTGTGACCCTAAAGTTCTCTGCATTATCAACCCCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR CCA 72 bp GGCGGACAGAGGCGAACCGAGAGTAGCTTCACCAGCTaGCCTTTGATCTCGGGGTGCAAATTGATCACCTCC +
Preference number: 3 (lower is better)
Translates to: GGQRRTESSFTS*PLISGCKLITS
Trigger: GGAGGTGATCAATTTGCACCCCGAGATCAAAGGCCAGCTGGTGAAGCTACTCTCGGTTCGCCTCTGTCCGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR CAA 90 bp TTGAAGTTCTGTTTTAAAGTCGCACCCCCTGCAGTGTGGGACTATAGGGCAGGAAAGGCCTGGGTGGTCTaGGGAGGGTCTGGCTCCGGT +
Preference number: 3 (lower is better)
Translates to: LKFCFKVAPPAVWDYRAGKAWVV*GGSGSG
Trigger: ACCGGAGCCAGACCCTCCCAAGACCACCCAGGCCTT...TCCTGCCCTATAGTCCCACACTGCAGGGGGTGCGACTTTAAAACAGAACTTCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR GCA 72 bp AACTTTAGGGTCACAGTGGTCTTTGGCTTGCCGCAATaGCCGCCGGAGCTCGTCCACATTCAAAGCCCAGCA +
Preference number: 3 (lower is better)
Translates to: NFRVTVVFGLPQ*PPELVHIQSPA
Trigger: TGCTGGGCTTTGAATGTGGACGAGCTCCGGCGGGCATTGCGGCAAGCCAAAGACCACTGTGACCCTAAAGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR CCA 72 bp GCACCCCCTGCAGTGTGGGACTATAGGGCAGGAGGCTaGTTTCAGCCTTACTCCACAGCCTTCACATCTTTC +
Preference number: 3 (lower is better)
Translates to: APPAVWDYRAGG*FQPYSTAFTSF
Trigger: GAAAGATGTGAAGGCTGTGGAGTAAGGCTGAAACCAGCCTCCTGCCCTATAGTCCCACACTGCAGGGGGTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CCA 72 bp GGCAACAGAAATCTAACTAAGGCACTGGCTTTGCCCTaGGCATTCAGAAGCATAGAGGGTGGCAGGGGCAGG +
Preference number: 3 (lower is better)
Translates to: GNRNLTKALALP*AFRSIEGGRGR
Trigger: CCTGCCCCTGCCACCCTCTATGCTTCTGAATGCCCAGGGCAAAGCCAGTGCCTTAGTTAGATTTCTGTTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR CAA 90 bp AAGCAAGAACTCAAGGGACCAACACCAACCACCCCCAAAAGAAAGTGTCACACCGCTCCTTGCAAGGGGTaGCACTGGATCCCTGGGACT +
Preference number: 3 (lower is better)
Translates to: KQELKGPTPTTPKRKCHTAPCKG*HWIPGT
Trigger: AGTCCCAGGGATCCAGTGCAACCCCTTGCAAGGAGC...GGTGTGACACTTTCTTTTGGGGGTGGTTGGTGTTGGTCCCTTGAGTTCTTGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR TCA 72 bp AACACTGTTCCCACCTCAATCACACTCTTGGTGACGTaGTGGGCACGGACACTGGGACCTCACACTTGCGTA +
Preference number: 3 (lower is better)
Translates to: NTVPTSITLLVT*WARTLGPHTCV
Trigger: TACGCAAGTGTGAGGTCCCAGTGTCCGTGCCCATCACGTCACCAAGAGTGTGATTGAGGTGGGAACAGTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR TCA 72 bp CTGACAACACTGTTCCCACCTCAATCACACTCTTGGTaGCGTGATGGGCACGGACACTGGGACCTCACACTT +
Preference number: 3 (lower is better)
Translates to: LTTLFPPQSHSW*RDGHGHWDLTL
Trigger: AAGTGTGAGGTCCCAGTGTCCGTGCCCATCACGTCACCAAGAGTGTGATTGAGGTGGGAACAGTGTTGTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR GCA 72 bp GGATTGCCTCCATTTTCAGCCCTTGCTTATCTCTGCTaGGACCAGCAGAGGGCGATGGTATGCATCAAGGCT +
Preference number: 3 (lower is better)
Translates to: GLPPFSALAYLC*DQQRAMVCIKA
Trigger: AGCCTTGATGCATACCATCGCCCTCTGCTGGTCGCAGCAGAGATAAGCAAGGGCTGAAAATGGAGGCAATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR GCA 72 bp ATGCAGAGAACTTTAGGGTCACAGTGGTCTTTGGCTTaGCGCAATGCCCGCCGGAGCTCGTCCACATTCAAA +
Preference number: 3 (lower is better)
Translates to: MQRTLGSQWSLA*RNARRSSSTFK
Trigger: TTTGAATGTGGACGAGCTCCGGCGGGCATTGCGGCAAGCCAAAGACCACTGTGACCCTAAAGTTCTCTGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR GCA 72 bp GGGATGAGAATCCGAGGGAACGCATACATAGCTCCTTaGAAGGGGTTGCACTGGATCCCTGGGACTTGGTTA +
Preference number: 3 (lower is better)
Translates to: GMRIRGNAYIAP*KGLHWIPGTWL
Trigger: TAACCAAGTCCCAGGGATCCAGTGCAACCCCTTGCAAGGAGCTATGTATGCGTTCCCTCGGATTCTCATCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR CCA 72 bp TGCTCACATCCAAATGGAAACAATGTCTCTGAGGTGTaGCTGACCAGGTCCAGCCTGGCCAGGTTTCCACAG +
Preference number: 3 (lower is better)
Translates to: CSHPNGNNVSEV*LTRSSLARFPQ
Trigger: CTGTGGAAACCTGGCCAGGCTGGACCTGGTCAGCCACACCTCAGAGACATTGTTTCCATTTGGATGTGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR-3UTR CAA 90 bp AGGGAACGCATACATAGCTCCTTGCAAGGGGTTGCACTGGATCCCTGGGACTTGTATGCACTTTCTGCTTaGTACCTGGCCTGTGGGGTT +
Preference number: 3 (lower is better)
Translates to: RERIHSSLQGVALDPWDLYALSA*YLACGV
Trigger: AACCCCACAGGCCAGGTACAAAGCAGAAAGTGCATA...CAAGTCCCAGGGATCCAGTGCAACCCCTTGCAAGGAGCTATGTATGCGTTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR TCA 72 bp CTGTTTCAGATGGACCGTGGATCGCAGCAGAGAACCTaGCCAAGGATAAAAGGGCCAGGTAGGCAGTTAGTC +
Preference number: 3 (lower is better)
Translates to: LFQMDRGSQQRT*PRIKGPGRQLV
Trigger: GACTAACTGCCTACCTGGCCCTTTTATCCTTGGTCAGGTTCTCTGCTGCGATCCACGGTCCATCTGAAACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR GCA 72 bp GCTTATCTCTGCTGCGACCAGCAGAGGGCGATGGTATaGATCAAGGCTCAGGCAAACCTGGAGAAAACTGTT +
Preference number: 3 (lower is better)
Translates to: AYLCCDQQRAMV*IKAQANLEKTV
Trigger: AACAGTTTTCTCCAGGTTTGCCTGAGCCTTGATGCATACCATCGCCCTCTGCTGGTCGCAGCAGAGATAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR GCA 72 bp GCTAGCTCCAGTAGTCAGGTAAATGTTGTCTGGGTCTaGAGGCACACCATCTCTCCTGGTGATAAAGGCTGC +
Preference number: 3 (lower is better)
Translates to: ASSSSQVNVVWV*RHTISPGDKGC
Trigger: GCAGCCTTTATCACCAGGAGAGATGGTGTGCCTGCAGACCCAGACAACATTTACCTGACTACTGGAGCTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR CAA 90 bp GCAGTGTGGGACTATAGGGCAGGAGGCTGGTTTCAGCCTTACTCCACAGCCTTCTCATGGATCTCACTATaGATTTCTGGATTCCCAGCC +
Preference number: 3 (lower is better)
Translates to: AVWDYRAGGWFQPYSTAFSWISL*ISGFPA
Trigger: GGCTGGGAATCCAGAAATCAATAGTGAGATCCATGA...GAAGGCTGTGGAGTAAGGCTGAAACCAGCCTCCTGCCCTATAGTCCCACACTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR TCA 72 bp TGGCATGATCGATCACTGCCTCGGTACACGGGAAGGTaGGTATGCATCTGTACACACTCTGAACATCAGCCA +
Preference number: 3 (lower is better)
Translates to: WHDRSLPRYTGR*VCICTHSEHQP
Trigger: TGGCTGATGTTCAGAGTGTGTACAGATGCATACTCACCTTCCCGTGTACCGAGGCAGTGATCGATCATGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR GCA 72 bp AAAGGATTGCCTCCATTTTCAGCCCTTGCTTATCTCTaGTGCGACCAGCAGAGGGCGATGGTATGCATCAAG +
Preference number: 3 (lower is better)
Translates to: KGLPPFSALAYL*CDQQRAMVCIK
Trigger: CTTGATGCATACCATCGCCCTCTGCTGGTCGCAGCAGAGATAAGCAAGGGCTGAAAATGGAGGCAATCCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CCA 72 bp TTGAAGTTCTGTTTTAAAGTCGCACCCCCTGCAGTGTaGGACTATAGGGCAGGAGGCTGGTTTCAGCCTTAC +
Preference number: 3 (lower is better)
Translates to: LKFCFKVAPPAV*DYRAGGWFQPY
Trigger: GTAAGGCTGAAACCAGCCTCCTGCCCTATAGTCCCACACTGCAGGGGGTGCGACTTTAAAACAGAACTTCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CCA 72 bp TTTTTCCCTGCTGAATTGCTCAAAGGACTCCTCTCCTaGTTCCGGTGGATTCACAACAATGTCCATGGCGGC +
Preference number: 3 (lower is better)
Translates to: FFPAELLKGLLS*FRWIHNNVHGG
Trigger: GCCGCCATGGACATTGTTGTGAATCCACCGGAACCAGGAGAGGAGTCCTTTGAGCAATTCAGCAGGGAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR-3UTR CAA 90 bp ACCTCTCTCTCCAGTCCTGACAACACTGTTCCCACCTCAATCACACTCTTGGTGGTCAGCTTTGCTTTTTaGGCCAGATTACCAAGGACG +
Preference number: 3 (lower is better)
Translates to: TSLSSPDNTVPTSITLLVVSFAF*ARLPRT
Trigger: CGTCCTTGGTAATCTGGCCAAAAAAGCAAAGCTGAC...CACCAAGAGTGTGATTGAGGTGGGAACAGTGTTGTCAGGACTGGAGAGAGAGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR TCA 72 bp TGGCCAGATTACCAAGGACGAATTCTTTTTCCCTGCTaGATTGCTCAAAGGACTCCTCTCCTGGTTCCGGTG +
Preference number: 3 (lower is better)
Translates to: WPDYQGRILFPC*IAQRTPLLVPV
Trigger: CACCGGAACCAGGAGAGGAGTCCTTTGAGCAATTCAGCAGGGAAAAAGAATTCGTCCTTGGTAATCTGGCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR TCA 72 bp CTGGACAGATGTCCTGGATTACATACGAAAGCAGGCTaGGCAAGCCATGGAAAGCAAGCCAGTAAGCAACGT +
Preference number: 3 (lower is better)
Translates to: LDRCPGLHTKAG*ASHGKQASKQR
Trigger: ACGTTGCTTACTGGCTTGCTTTCCATGGCTTGCTCAGCCTGCTTTCGTATGTAATCCAGGACATCTGTCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR CCA 72 bp CTTGCCTGTGATGCGCTGCCTATCTTCAGACCAGAATaGTCAGCTTTCTCTGAGTTCTCACTAGACTTGCAG +
Preference number: 3 (lower is better)
Translates to: LACDALPIFRPE*SAFSEFSLDLQ
Trigger: CTGCAAGTCTAGTGAGAACTCAGAGAAAGCTGACCATTCTGGTCTGAAGATAGGCAGCGCATCACAGGCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR GCA 72 bp GCTTCTCTTCCCAGGCAAAGTGAATCACATCTTCTATaGACTTTCTGCTTTGTACCTGGCCTGTGGGGTTTC +
Preference number: 3 (lower is better)
Translates to: ASLPRQSESHLL*TFCFVPGLWGF
Trigger: GAAACCCCACAGGCCAGGTACAAAGCAGAAAGTGCATAGAAGATGTGATTCACTTTGCCTGGGAAGAGAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR TCA 72 bp ATAAAAGTTTGTGGAGGCTTTTTCTTGATTAATGATTaGTGTGGAAGGACCCAGGCCACCATGGGTGGTGCC +
Preference number: 3 (lower is better)
Translates to: IKVCGGFFLIND*CGRTQATMGGA
Trigger: GGCACCACCCATGGTGGCCTGGGTCCTTCCACATCAATCATTAATCAAGAAAAAGCCTCCACAAACTTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR CCA 72 bp CTCTGGAAGTATTTTATTGTTCAGAGCTTCCCAGCATaGCTGTTACAAAGAACCATGCTAAGGAGGCGGAAG +
Preference number: 3 (lower is better)
Translates to: LWKYFIVQSFPA*LLQRTMLRRRK
Trigger: CTTCCGCCTCCTTAGCATGGTTCTTTGTAACAGCCATGCTGGGAAGCTCTGAACAATAAAATACTTCCAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR TCA 72 bp TTCAAGGAATATATTTGCTTGGTGGCTGCTACTTTGTaGCACACAGGGAAGCCTGATGAGATAGGATGCTGT +
Preference number: 3 (lower is better)
Translates to: FKEYICLVAATL*HTGKPDEIGCC
Trigger: ACAGCATCCTATCTCATCAGGCTTCCCTGTGTGTCACAAAGTAGCAGCCACCAAGCAAATATATTCCTTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR-3UTR CAA 90 bp GATCTCACTATTGATTTCTGGATTCCCAGCCCTTATCATGTCAAGTCACATATTAGGGCCTGTGAGACATaGCAAAACCACTGTTTGCTC +
Preference number: 3 (lower is better)
Translates to: DLTIDFWIPSPYHVKSHIRACET*QNHCLL
Trigger: GAGCAAACAGTGGTTTTGCAATGTCTCACAGGCCCT...AATATGTGACTTGACATGATAAGGGCTGGGAATCCAGAAATCAATAGTGAGATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR TCA 72 bp TGTGCCAGGCTGTCCTGGTTGGGATTTCTGTCAAATTaGCACAAACTAGATTTATCTGGGAAGAATTTCTCC +
Preference number: 3 (lower is better)
Translates to: CARLSWLGFLSN*HKLDLSGKNFS
Trigger: GGAGAAATTCTTCCCAGATAAATCTAGTTTGTGTCAATTTGACAGAAATCCCAACCAGGACAGCCTGGCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR GCA 72 bp AAAACAGGGCCTGTGAGACATTGCAAAACCACTGTTTaGTCGAAGAACTCTCAAACATCAAGGCACAAAGAA +
Preference number: 3 (lower is better)
Translates to: KTGPVRHCKTTV*SKNSQTSRHKE
Trigger: TTCTTTGTGCCTTGATGTTTGAGAGTTCTTCGAGCAAACAGTGGTTTTGCAATGTCTCACAGGCCCTGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR TCA 72 bp CACATATTTCCCAACACCTGCTTGTTTCTCCAGATCTaGCATAATCTCATTTCCATGTACTCTGGCTGCTTA +
Preference number: 3 (lower is better)
Translates to: HIFPNTCLFLQI*HNLISMYSGCL
Trigger: TAAGCAGCCAGAGTACATGGAAATGAGATTATGTCAGATCTGGAGAAACAAGCAGGTGTTGGGAAATATGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR GCA 72 bp AAGAATCTCAGAACTCTGGAGCATATCTGGATTATATaGCTAGCGAGCACACATGGTACCTTTTCAGCTTTT +
Preference number: 3 (lower is better)
Translates to: KNLRTLEHIWII*LASTHGTFSAF
Trigger: AAAAGCTGAAAAGGTACCATGTGTGCTCGCTAGGCATATAATCCAGATATGCTCCAGAGTTCTGAGATTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CCA 72 bp GGGATTGAATTTAGGGCTTCATACATGCTAGACAAGTaGTCAAACTATATTCTAATCCTAGAACACAACTCT +
Preference number: 3 (lower is better)
Translates to: GIEFRASYMLDK*SNYILILEHNS
Trigger: AGAGTTGTGTTCTAGGATTAGAATATAGTTTGACCACTTGTCTAGCATGTATGAAGCCCTAAATTCAATCCC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR GCA 90 bp TGTCCTGACACTGGCGGACAGAGGCGAACCGAGAGTAGCTTCACCAGCTGGCCTCTTCGGCTGCAGCGCTaGTGTGACTACGGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: CPDTGGQRRTESSFTSWPLRLQR*CDYGPR
Trigger: CCTGGGGCCGTAGTCACAGCAGCGCTGCAGCCGAAG...AGGCCAGCTGGTGAAGCTACTCTCGGTTCGCCTCTGTCCGCCAGTGTCAGGACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR TCA 90 bp GCAGTGTGGGACTATAGGGCAGGAGGCTGGTTTCAGCCTTACTCCACAGCCTTCTCATGGACTCCAGGGTaGGGATGCGGTCTCGAGGGC +
Preference number: 4 (lower is better)
Translates to: AVWDYRAGGWFQPYSTAFSWTPG*GCGLEG
Trigger: GCCCTCGAGACCGCATCCTCACCCTGGAGTCCATGA...GAAGGCTGTGGAGTAAGGCTGAAACCAGCCTCCTGCCCTATAGTCCCACACTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR TCA 90 bp GCTCCTGCGCGGGAGCTCCGGACAGCTTTCCCACTCTCACTGAAGAACGAGACACAGAGTGCCATCACCTaGCGGAGGAAGGTGATTGGC +
Preference number: 4 (lower is better)
Translates to: APARELRTAFPLSLKNETQSAIT*RRKVIG
Trigger: GCCAATCACCTTCCTCCGTCAGGTGATGGCACTCTG...TGTCTCGTTCTTCAGTGAGAGTGGGAAAGCTGTCCGGAGCTCCCGCGCAGGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CCA 90 bp GCTCCTGCGCGGGAGCTCCGGACAGCTTTCCCACTCTCACTGAAGAACGAGACACGAGCTCCACGTTGCTaGAGTACTCGTGCCCCATCT +
Preference number: 4 (lower is better)
Translates to: APARELRTAFPLSLKNETRAPRC*STRAPS
Trigger: AGATGGGGCACGAGTACTCCAGCAACGTGGAGCTCG...TGTCTCGTTCTTCAGTGAGAGTGGGAAAGCTGTCCGGAGCTCCCGCGCAGGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 72 bp CTTCACATCTTTCTCTCTCTGGCTCCGAAAACTCCCTaGACTCGCTGCGTGGGTACCCAGGCTCCTGCGCGG +
Preference number: 4 (lower is better)
Translates to: LHIFLSLAPKTP*TRCVGTQAPAR
Trigger: CCGCGCAGGAGCCTGGGTACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAAGATGTGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR GCA 90 bp CTTCACATCTTTCTCTCTCTGGCTCCGAAAACTCCCTTGACTCGCTGCGTGGGTCGCCGGTCCGTGACTTaGCACCACCGGAGACCAGGA +
Preference number: 4 (lower is better)
Translates to: LHIFLSLAPKTPLTRCVGRRSVT*HHRRPG
Trigger: TCCTGGTCTCCGGTGGTGGCAAGTCACGGACCGGCG...ACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAAGATGTGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 72 bp TACTGGGGGATGGGAATCATCACGCCGGTCCGTGACTaGCCACCACCGGAGACCAGGAGCTTCAGGATTGTA +
Preference number: 4 (lower is better)
Translates to: YWGMGIITPVRD*PPPETRSFRIV
Trigger: TACAATCCTGAAGCTCCTGGTCTCCGGTGGTGGCAAGTCACGGACCGGCGTGATGATTCCCATCCCCCAGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR TCA 90 bp AAGCAAGAACTCAAGGGACCAACACCAACCACCCCCAAAAGAAAGTGTCACACCCGATCTCGCCGGCTTTaGGCACGATGGGTCCCCGCA +
Preference number: 4 (lower is better)
Translates to: KQELKGPTPTTPKRKCHTRSRRL*ARWVPA
Trigger: TGCGGGGACCCATCGTGCTCAAAGCCGGCGAGATCG...GGTGTGACACTTTCTTTTGGGGGTGGTTGGTGTTGGTCCCTTGAGTTCTTGCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR GCA 90 bp GCAGTGTGGGACTATAGGGCAGGAGGCTGGTTTCAGCCTTACTCCACAGCCTTCTGGGTAGGTGCAGAGTaGCATCACCTGACGGAGGAA +
Preference number: 4 (lower is better)
Translates to: AVWDYRAGGWFQPYSTAFWVGAE*HHLTEE
Trigger: TTCCTCCGTCAGGTGATGGCACTCTGCACCTACCCA...GAAGGCTGTGGAGTAAGGCTGAAACCAGCCTCCTGCCCTATAGTCCCACACTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR GCA 90 bp CACCCACATGCTGCGACTCGAGTGATGCTGAAACCCAAAAGGCATGGCAACAGATTTCCACCACAAGCCTaGAGGATCCGCCGCGCTCGT +
Preference number: 4 (lower is better)
Translates to: HPHAATRVMLKPKRHGNRFPPQA*RIRRAR
Trigger: ACGAGCGCGGCGGATCCTGCAGGCTTGTGGTGGAAA...TCTGTTGCCATGCCTTTTGGGTTTCAGCATCACTCGAGTCGCAGCATGTGGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CCA 90 bp TTTCTCTCTCTGGCTCCGAAAACTCCCTTGACTCGCTGCGTGGGTACCCAGGCTACGGAGGAAGGTGATTaGCTGCTGGCCCATAGCATG +
Preference number: 4 (lower is better)
Translates to: FLSLAPKTPLTRCVGTQATEEGD*LLAHSM
Trigger: CATGCTATGGGCCAGCAGCCAATCACCTTCCTCCGT...AGCCTGGGTACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 72 bp AGGGCCTTGGGAAAGGATTGCCTCCATTTTCAGCCCTaGCTTATCTCTGCTGCGACCAGCAGAGGGCGATGG +
Preference number: 4 (lower is better)
Translates to: RALGKDCLHFQP*LISAATSRGRW
Trigger: CCATCGCCCTCTGCTGGTCGCAGCAGAGATAAGCAAGGGCTGAAAATGGAGGCAATCCTTTCCCAAGGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR GCA 90 bp TACCTGGCCTGTGGGGTTTCCGGGGTTGATAATGCAGAGAACTTTAGGGTCACATCCACCGCCTTCACCTaGGGGTTCATGGACTCCAGG +
Preference number: 4 (lower is better)
Translates to: YLACGVSGVDNAENFRVTSTAFT*GFMDSR
Trigger: CCTGGAGTCCATGAACCCGCAGGTGAAGGCGGTGGA...TGTGACCCTAAAGTTCTCTGCATTATCAACCCCGGAAACCCCACAGGCCAGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR TCA 90 bp TACACCTGTTCTGTGCCAGGCTGTCCTGGTTGGGATTTCTGTCAAATTGACACATCATGGACTCCAGGGTaGGGATGCGGTCTCGAGGGC +
Preference number: 4 (lower is better)
Translates to: YTCSVPGCPGWDFCQIDTSWTPG*GCGLEG
Trigger: GCCCTCGAGACCGCATCCTCACCCTGGAGTCCATGA...TGTGTCAATTTGACAGAAATCCCAACCAGGACAGCCTGGCACAGAACAGGTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR TCA 90 bp GAAGAACTGATGATGCTAAGTAGGAAAGAGCATGCAGGCCTGCGCCTGCTCACAGCCATTTTATGGGACTaGGCTGCCTCCACGGCCTTG +
Preference number: 4 (lower is better)
Translates to: EELMMLSRKEHAGLRLLTAILWD*AASTAL
Trigger: CAAGGCCGTGGAGGCAGCTCAGTCCCATAAAATGGC...TGTGAGCAGGCGCAGGCCTGCATGCTCTTTCCTACTTAGCATCATCAGTTCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR GCA 90 bp CCGGGGTTGATAATGCAGAGAACTTTAGGGTCACAGTGGTCTTTGGCTTGCCGCTGGGTAGGTGCAGAGTaGCATCACCTGACGGAGGAA +
Preference number: 4 (lower is better)
Translates to: PGLIMQRTLGSQWSLACRWVGAE*HHLTEE
Trigger: TTCCTCCGTCAGGTGATGGCACTCTGCACCTACCCA...GCGGCAAGCCAAAGACCACTGTGACCCTAAAGTTCTCTGCATTATCAACCCCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR GCA 90 bp CCCACAAAAGTAACCTCTCTCTCCAGTCCTGACAACACTGTTCCCACCTCAATCTTTCCACCACAAGCCTaGAGGATCCGCCGCGCTCGT +
Preference number: 4 (lower is better)
Translates to: PTKVTSLSSPDNTVPTSIFPPQA*RIRRAR
Trigger: ACGAGCGCGGCGGATCCTGCAGGCTTGTGGTGGAAA...GATTGAGGTGGGAACAGTGTTGTCAGGACTGGAGAGAGAGGTTACTTTTGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR CCA 90 bp CACCCACATGCTGCGACTCGAGTGATGCTGAAACCCAAAAGGCATGGCAACAGATTTCTGCTTTGTACCTaGCCTGTGGGGTTTCCGGGG +
Preference number: 4 (lower is better)
Translates to: HPHAATRVMLKPKRHGNRFLLCT*PVGFPG
Trigger: CCCCGGAAACCCCACAGGCCAGGTACAAAGCAGAAA...TCTGTTGCCATGCCTTTTGGGTTTCAGCATCACTCGAGTCGCAGCATGTGGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 72 bp AATGCAGAGAACTTTAGGGTCACAGTGGTCTTTGGCTaGCCGCAATGCCCGCCGGAGCTCGTCCACATTCAA +
Preference number: 4 (lower is better)
Translates to: NAENFRVTVVFG*PQCPPELVHIQ
Trigger: TTGAATGTGGACGAGCTCCGGCGGGCATTGCGGCAAGCCAAAGACCACTGTGACCCTAAAGTTCTCTGCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR TCA 90 bp ATGAAAAACAACTTTCAGGGCCTTGGGAAAGGATTGCCTCCATTTTCAGCCCTTCGATCTCGCCGGCTTTaGGCACGATGGGTCCCCGCA +
Preference number: 4 (lower is better)
Translates to: MKNNFQGLGKGLPPFSALRSRRL*ARWVPA
Trigger: TGCGGGGACCCATCGTGCTCAAAGCCGGCGAGATCG...AAGGGCTGAAAATGGAGGCAATCCTTTCCCAAGGCCCTGAAAGTTGTTTTTCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR TCA 90 bp GAAGAACTGATGATGCTAAGTAGGAAAGAGCATGCAGGCCTGCGCCTGCTCACATCTCGGGGTGCAAATTaGTCACCTCCATGTAGCCCC +
Preference number: 4 (lower is better)
Translates to: EELMMLSRKEHAGLRLLTSRGAN*SPPCSP
Trigger: GGGGCTACATGGAGGTGATCAATTTGCACCCCGAGA...TGTGAGCAGGCGCAGGCCTGCATGCTCTTTCCTACTTAGCATCATCAGTTCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR GCA 90 bp CTTCACATCTTTCTCTCTCTGGCTCCGAAAACTCCCTTGACTCGCTGCGTGGGTGTAGGTTTGGGTAGGTaGAGAGTGCCATCACCTGAC +
Preference number: 4 (lower is better)
Translates to: LHIFLSLAPKTPLTRCVGVGLGR*RVPSPD
Trigger: GTCAGGTGATGGCACTCTGCACCTACCCAAACCTAC...ACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAAGATGTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CCA 90 bp AGCACCCCCATTTCCTTATGTAGTGACAGAGGGTCTGAGCCTGCCATGATGAGAACGGAGGAAGGTGATTaGCTGCTGGCCCATAGCATG +
Preference number: 4 (lower is better)
Translates to: STPISLCSDRGSEPAMMRTEEGD*LLAHSM
Trigger: CATGCTATGGGCCAGCAGCCAATCACCTTCCTCCGT...TCTCATCATGGCAGGCTCAGACCCTCTGTCACTACATAAGGAAATGGGGGTGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR CCA 90 bp CCTGATGAGATAGGATGCTGTCCGCAGATGAGGGAGGGAGGCAGGAAACTGATGCGTCTTCTGGGAAGCTaGGGCTGTTTAGTAGGTTTG +
Preference number: 4 (lower is better)
Translates to: PDEIGCCPQMREGGRKLMRLLGS*GCLVGL
Trigger: CAAACCTACTAAACAGCCCCAGCTTCCCAGAAGACG...CATCAGTTTCCTGCCTCCCTCCCTCATCTGCGGACAGCATCCTATCTCATCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CCA 90 bp CCTGATGAGATAGGATGCTGTCCGCAGATGAGGGAGGGAGGCAGGAAACTGATGCAGGTAAATGTTGTCTaGGTCTGCAGGCACACCATC +
Preference number: 4 (lower is better)
Translates to: PDEIGCCPQMREGGRKLMQVNVV*VCRHTI
Trigger: GATGGTGTGCCTGCAGACCCAGACAACATTTACCTG...CATCAGTTTCCTGCCTCCCTCCCTCATCTGCGGACAGCATCCTATCTCATCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CCA 90 bp CACCCACATGCTGCGACTCGAGTGATGCTGAAACCCAAAAGGCATGGCAACAGAGAGTACACGTTGTCCTaGTACACCTCATCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: HPHAATRVMLKPKRHGNREYTLS*YTSSAR
Trigger: CCTGGCTGATGAGGTGTACCAGGACAACGTGTACTC...TCTGTTGCCATGCCTTTTGGGTTTCAGCATCACTCGAGTCGCAGCATGTGGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CCA 90 bp CCTGATGAGATAGGATGCTGTCCGCAGATGAGGGAGGGAGGCAGGAAACTGATGGTGGAATCTGCAGTCTaGAGAGTACACGTTGTCCTG +
Preference number: 4 (lower is better)
Translates to: PDEIGCCPQMREGGRKLMVESAV*RVHVVL
Trigger: CAGGACAACGTGTACTCTCCAGACTGCAGATTCCAC...CATCAGTTTCCTGCCTCCCTCCCTCATCTGCGGACAGCATCCTATCTCATCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 72 bp CATCAGCCACCTTCCACACACTCAACAGTCACGTGTTaGCTGATAGGCCCAGACCCATTGGAACCCACATTC +
Preference number: 4 (lower is better)
Translates to: HQPPSTHSTVTC*LIGPDPLEPTF
Trigger: GAATGTGGGTTCCAATGGGTCTGGGCCTATCAGCAAACACGTGACTGTTGAGTGTGTGGAAGGTGGCTGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR GCA 90 bp AAAAACAACTTTCAGGGCCTTGGGAAAGGATTGCCTCCATTTTCAGCCCTTGCTTCCACCGCCTTCACCTaGGGGTTCATGGACTCCAGG +
Preference number: 4 (lower is better)
Translates to: KNNFQGLGKGLPPFSALASTAFT*GFMDSR
Trigger: CCTGGAGTCCATGAACCCGCAGGTGAAGGCGGTGGA...AGCAAGGGCTGAAAATGGAGGCAATCCTTTCCCAAGGCCCTGAAAGTTGTTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR GCA 90 bp ACCTCTCTCTCCAGTCCTGACAACACTGTTCCCACCTCAATCACACTCTTGGTGGTAGGTTTGGGTAGGTaGAGAGTGCCATCACCTGAC +
Preference number: 4 (lower is better)
Translates to: TSLSSPDNTVPTSITLLVVGLGR*RVPSPD
Trigger: GTCAGGTGATGGCACTCTGCACCTACCCAAACCTAC...CACCAAGAGTGTGATTGAGGTGGGAACAGTGTTGTCAGGACTGGAGAGAGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR CCA 90 bp CCTGATGAGATAGGATGCTGTCCGCAGATGAGGGAGGGAGGCAGGAAACTGATGGTTGCACTGGATCCCTaGGACTTGGTTAAACAGATC +
Preference number: 4 (lower is better)
Translates to: PDEIGCCPQMREGGRKLMVALDP*DLVKQI
Trigger: GATCTGTTTAACCAAGTCCCAGGGATCCAGTGCAAC...CATCAGTTTCCTGCCTCCCTCCCTCATCTGCGGACAGCATCCTATCTCATCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CCA 90 bp TTTCTCTCTCTGGCTCCGAAAACTCCCTTGACTCGCTGCGTGGGTACCCAGGCTGCAGTAGAACATGTCTaGAGCCATTTTATGGGACTG +
Preference number: 4 (lower is better)
Translates to: FLSLAPKTPLTRCVGTQAAVEHV*SHFMGL
Trigger: CAGTCCCATAAAATGGCTCCAGACATGTTCTACTGC...AGCCTGGGTACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR GCA 90 bp AACATCAAGGCACAAAGAAAGAAGTCTCCTTGGGGAAATGAAGATGAACAGCGTCAGTGGTCTTTGGCTTaGCGCAATGCCCGCCGGAGC +
Preference number: 4 (lower is better)
Translates to: NIKAQRKKSPWGNEDEQRQWSLA*RNARRS
Trigger: GCTCCGGCGGGCATTGCGGCAAGCCAAAGACCACTG...ACGCTGTTCATCTTCATTTCCCCAAGGAGACTTCTTTCTTTGTGCCTTGATGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR GCA 90 bp AGGGCCTTGGGAAAGGATTGCCTCCATTTTCAGCCCTTGCTTATCTCTGCTGCGCCTTTGATCTCGGGGTaGAAATTGATCACCTCCATG +
Preference number: 4 (lower is better)
Translates to: RALGKDCLHFQPLLISAAPLISG*KLITSM
Trigger: CATGGAGGTGATCAATTTGCACCCCGAGATCAAAGG...CGCAGCAGAGATAAGCAAGGGCTGAAAATGGAGGCAATCCTTTCCCAAGGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CCA 90 bp GCAGTGTGGGACTATAGGGCAGGAGGCTGGTTTCAGCCTTACTCCACAGCCTTCAAGTCTTTCACCTTGTaGAGCACGGTCTTCAGTTTA +
Preference number: 4 (lower is better)
Translates to: AVWDYRAGGWFQPYSTAFKSFTL*STVFSL
Trigger: TAAACTGAAGACCGTGCTCCACAAGGTGAAAGACTT...GAAGGCTGTGGAGTAAGGCTGAAACCAGCCTCCTGCCCTATAGTCCCACACTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 72 bp ATCCGAGGGAACGCATACATAGCTCCTTGCAAGGGGTaGCACTGGATCCCTGGGACTTGGTTAAACAGATCT +
Preference number: 4 (lower is better)
Translates to: IRGNAYIAPCKG*HWIPGTWLNRS
Trigger: AGATCTGTTTAACCAAGTCCCAGGGATCCAGTGCAACCCCTTGCAAGGAGCTATGTATGCGTTCCCTCGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR GCA 90 bp GATCTCACTATTGATTTCTGGATTCCCAGCCCTTATCATGTCAAGTCACATATTCTTCGGCTGCAGCGCTaGTGTGACTACGGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: DLTIDFWIPSPYHVKSHILRLQR*CDYGPR
Trigger: CCTGGGGCCGTAGTCACAGCAGCGCTGCAGCCGAAG...AATATGTGACTTGACATGATAAGGGCTGGGAATCCAGAAATCAATAGTGAGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CCA 90 bp AAAAACAACTTTCAGGGCCTTGGGAAAGGATTGCCTCCATTTTCAGCCCTTGCTAGTAGCTTCACCAGCTaGCCTTTGATCTCGGGGTGC +
Preference number: 4 (lower is better)
Translates to: KNNFQGLGKGLPPFSALASSFTS*PLISGC
Trigger: GCACCCCGAGATCAAAGGCCAGCTGGTGAAGCTACT...AGCAAGGGCTGAAAATGGAGGCAATCCTTTCCCAAGGCCCTGAAAGTTGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 72 bp TTTCTGCTTTGTACCTGGCCTGTGGGGTTTCCGGGGTaGATAATGCAGAGAACTTTAGGGTCACAGTGGTCT +
Preference number: 4 (lower is better)
Translates to: FLLCTWPVGFPG*IMQRTLGSQWS
Trigger: AGACCACTGTGACCCTAAAGTTCTCTGCATTATCAACCCCGGAAACCCCACAGGCCAGGTACAAAGCAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR TCA 90 bp GAAGAACTGATGATGCTAAGTAGGAAAGAGCATGCAGGCCTGCGCCTGCTCACATCTTCCCAGGCAAAGTaGATCACATCTTCTATGCAC +
Preference number: 4 (lower is better)
Translates to: EELMMLSRKEHAGLRLLTSSQAK*ITSSMH
Trigger: GTGCATAGAAGATGTGATTCACTTTGCCTGGGAAGA...TGTGAGCAGGCGCAGGCCTGCATGCTCTTTCCTACTTAGCATCATCAGTTCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR TCA 90 bp CTTCACATCTTTCTCTCTCTGGCTCCGAAAACTCCCTTGACTCGCTGCGTGGGTATTCTTTTTCCCTGCTaGATTGCTCAAAGGACTCCT +
Preference number: 4 (lower is better)
Translates to: LHIFLSLAPKTPLTRCVGILFPC*IAQRTP
Trigger: AGGAGTCCTTTGAGCAATTCAGCAGGGAAAAAGAAT...ACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAAGATGTGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR GCA 90 bp GCAGTGTGGGACTATAGGGCAGGAGGCTGGTTTCAGCCTTACTCCACAGCCTTCGAATCACATCTTCTATaGACTTTCTGCTTTGTACCT +
Preference number: 4 (lower is better)
Translates to: AVWDYRAGGWFQPYSTAFESHLL*TFCFVP
Trigger: AGGTACAAAGCAGAAAGTGCATAGAAGATGTGATTC...GAAGGCTGTGGAGTAAGGCTGAAACCAGCCTCCTGCCCTATAGTCCCACACTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR GCA 90 bp TGGATCTCACTATTGATTTCTGGATTCCCAGCCCTTATCATGTCAAGTCACATAAGGCGAGCTCCACGTTaGTGGAGTACTCGTGCCCCA +
Preference number: 4 (lower is better)
Translates to: WISLLISGFPALIMSSHIRRAPR*WSTRAP
Trigger: TGGGGCACGAGTACTCCAGCAACGTGGAGCTCGCCT...TATGTGACTTGACATGATAAGGGCTGGGAATCCAGAAATCAATAGTGAGATCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CCA 90 bp ATGAAAAACAACTTTCAGGGCCTTGGGAAAGGATTGCCTCCATTTTCAGCCCTTAAGGTGATTGGCTGCTaGCCCATAGCATGGGCATCC +
Preference number: 4 (lower is better)
Translates to: MKNNFQGLGKGLPPFSALKVIGC*PIAWAS
Trigger: GGATGCCCATGCTATGGGCCAGCAGCCAATCACCTT...AAGGGCTGAAAATGGAGGCAATCCTTTCCCAAGGCCCTGAAAGTTGTTTTTCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CCA 90 bp AGGCAGTTAGTCCATCTGAGGACACAGCCCATATCTTTGACTGTTCAAAGACTTAAGGTGATTGGCTGCTaGCCCATAGCATGGGCATCC +
Preference number: 4 (lower is better)
Translates to: RQLVHLRTQPISLTVQRLKVIGC*PIAWAS
Trigger: GGATGCCCATGCTATGGGCCAGCAGCCAATCACCTT...AAGTCTTTGAACAGTCAAAGATATGGGCTGTGTCCTCAGATGGACTAACTGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR CCA 90 bp CTTCACATCTTTCTCTCTCTGGCTCCGAAAACTCCCTTGACTCGCTGCGTGGGTACTTTCTTAAACGAGTaGAATCTGCAGTCTGGAGAG +
Preference number: 4 (lower is better)
Translates to: LHIFLSLAPKTPLTRCVGTFLNE*NLQSGE
Trigger: CTCTCCAGACTGCAGATTCCACTCGTTTAAGAAAGT...ACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAAGATGTGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CCA 90 bp AAAAACAACTTTCAGGGCCTTGGGAAAGGATTGCCTCCATTTTCAGCCCTTGCTTCACAACAATGTCCATaGCGGCCTGTCCTGACACTG +
Preference number: 4 (lower is better)
Translates to: KNNFQGLGKGLPPFSALASQQCP*RPVLTL
Trigger: CAGTGTCAGGACAGGCCGCCATGGACATTGTTGTGA...AGCAAGGGCTGAAAATGGAGGCAATCCTTTCCCAAGGCCCTGAAAGTTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR GCA 90 bp AACATCAAGGCACAAAGAAAGAAGTCTCCTTGGGGAAATGAAGATGAACAGCGTAGGAAGGTGATTGGCTaGTGGCCCATAGCATGGGCA +
Preference number: 4 (lower is better)
Translates to: NIKAQRKKSPWGNEDEQRRKVIG*WPIAWA
Trigger: TGCCCATGCTATGGGCCAGCAGCCAATCACCTTCCT...ACGCTGTTCATCTTCATTTCCCCAAGGAGACTTCTTTCTTTGTGCCTTGATGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CCA 90 bp GATCTCACTATTGATTTCTGGATTCCCAGCCCTTATCATGTCAAGTCACATATTGGTCACAGTGGTCTTTaGCTTGCCGCAATGCCCGCC +
Preference number: 4 (lower is better)
Translates to: DLTIDFWIPSPYHVKSHIGHSGL*LAAMPA
Trigger: GGCGGGCATTGCGGCAAGCCAAAGACCACTGTGACC...AATATGTGACTTGACATGATAAGGGCTGGGAATCCAGAAATCAATAGTGAGATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CCA 90 bp TTGAAGTTCTGTTTTAAAGTCGCACCCCCTGCAGTGTGGGACTATAGGGCAGGATGGATCCCTGGGACTTaGTTAAACAGATCTTCTGTC +
Preference number: 4 (lower is better)
Translates to: LKFCFKVAPPAVWDYRAGWIPGT*LNRSSV
Trigger: GACAGAAGATCTGTTTAACCAAGTCCCAGGGATCCA...TCCTGCCCTATAGTCCCACACTGCAGGGGGTGCGACTTTAAAACAGAACTTCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 72 bp ACCATGAAAAACAACTTTCAGGGCCTTGGGAAAGGATaGCCTCCATTTTCAGCCCTTGCTTATCTCTGCTGC +
Preference number: 4 (lower is better)
Translates to: TMKNNFQGLGKG*PPFSALAYLCC
Trigger: GCAGCAGAGATAAGCAAGGGCTGAAAATGGAGGCAATCCTTTCCCAAGGCCCTGAAAGTTGTTTTTCATGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 72 bp GGCAAAGTGAATCACATCTTCTATGCACTTTCTGCTTaGTACCTGGCCTGTGGGGTTTCCGGGGTTGATAAT +
Preference number: 4 (lower is better)
Translates to: GKVNHIFYALSA*YLACGVSGVDN
Trigger: ATTATCAACCCCGGAAACCCCACAGGCCAGGTACAAAGCAGAAAGTGCATAGAAGATGTGATTCACTTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR CAA 72 bp AGGCAGTTAGTCCATCTGAGGACACAGCCCATATCTTaGACTGTTCAAAGACTTGGCTCTAGACGTCAGCAA +
Preference number: 4 (lower is better)
Translates to: RQLVHLRTQPIS*TVQRLGSRRQQ
Trigger: TTGCTGACGTCTAGAGCCAAGTCTTTGAACAGTCAAAGATATGGGCTGTGTCCTCAGATGGACTAACTGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR GCA 90 bp AAAAACAACTTTCAGGGCCTTGGGAAAGGATTGCCTCCATTTTCAGCCCTTGCTTTTTCCCTGCTGAATTaGTCAAAGGACTCCTCTCCT +
Preference number: 4 (lower is better)
Translates to: KNNFQGLGKGLPPFSALAFSLLN*SKDSSP
Trigger: AGGAGAGGAGTCCTTTGAGCAATTCAGCAGGGAAAA...AGCAAGGGCTGAAAATGGAGGCAATCCTTTCCCAAGGCCCTGAAAGTTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR GCA 90 bp AACATCAAGGCACAAAGAAAGAAGTCTCCTTGGGGAAATGAAGATGAACAGCGTCCTCCAGGAGCTTCATaGAGTAGAACATGTCTGGAG +
Preference number: 4 (lower is better)
Translates to: NIKAQRKKSPWGNEDEQRPPGAS*SRTCLE
Trigger: CTCCAGACATGTTCTACTGCATGAAGCTCCTGGAGG...ACGCTGTTCATCTTCATTTCCCCAAGGAGACTTCTTTCTTTGTGCCTTGATGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 72 bp AAAGGCTGCCACATCTTCACGGATACAGTTAACGCCTaGGCTAGCACTGTAAGATCCAAAAGATGGCATGAT +
Preference number: 4 (lower is better)
Translates to: KGCHIFTDTVNA*ASTVRSKRWHD
Trigger: ATCATGCCATCTTTTGGATCTTACAGTGCTAGCCAAGGCGTTAACTGTATCCGTGAAGATGTGGCAGCCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
3UTR CAA 72 bp CCAGAATGGTCAGCTTTCTCTGAGTTCTCACTAGACTaGCAGGCTTACTGTCCAAAAGGCTACATTTTCACA +
Preference number: 4 (lower is better)
Translates to: PEWSAFSEFSLD*QAYCPKGYIFT
Trigger: TGTGAAAATGTAGCCTTTTGGACAGTAAGCCTGCAAGTCTAGTGAGAACTCAGAGAAAGCTGACCATTCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 72 bp CACACTGGTCAGGGTTTGATTTCATGGATCTCACTATaGATTTCTGGATTCCCAGCCCTTATCATGTCAAGT +
Preference number: 4 (lower is better)
Translates to: HTGQGLISWISL*ISGFPALIMSS
Trigger: ACTTGACATGATAAGGGCTGGGAATCCAGAAATCAATAGTGAGATCCATGAAATCAAACCCTGACCAGTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 72 bp CTTCACAGTAATGCAATGCTTGTGAGTGTTAACAACTaGAAGTTCTGTTTTAAAGTCGCACCCCCTGCAGTG +
Preference number: 4 (lower is better)
Translates to: LHSNAMLVSVNN*KFCFKVAPPAV
Trigger: CACTGCAGGGGGTGCGACTTTAAAACAGAACTTCAAGTTGTTAACACTCACAAGCATTGCATTACTGTGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 72 bp CTGTGCCAGGCTGTCCTGGTTGGGATTTCTGTCAAATaGACACAAACTAGATTTATCTGGGAAGAATTTCTC +
Preference number: 4 (lower is better)
Translates to: LCQAVLVGISVK*TQTRFIWEEFL
Trigger: GAGAAATTCTTCCCAGATAAATCTAGTTTGTGTCAATTTGACAGAAATCCCAACCAGGACAGCCTGGCACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR GCA 90 bp GATCTCACTATTGATTTCTGGATTCCCAGCCCTTATCATGTCAAGTCACATATTCTTCTATGCACTTTCTaGTTTGTACCTGGCCTGTGG +
Preference number: 4 (lower is better)
Translates to: DLTIDFWIPSPYHVKSHILLCTF*FVPGLW
Trigger: CCACAGGCCAGGTACAAAGCAGAAAGTGCATAGAAG...AATATGTGACTTGACATGATAAGGGCTGGGAATCCAGAAATCAATAGTGAGATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 72 bp CTGTCCAAAAGGCTACATTTTCACACTGGTCAGGGTTaGATTTCATGGATCTCACTATTGATTTCTGGATTC +
Preference number: 4 (lower is better)
Translates to: LSKRLHFHTGQG*ISWISLLISGF
Trigger: GAATCCAGAAATCAATAGTGAGATCCATGAAATCAAACCCTGACCAGTGTGAAAATGTAGCCTTTTGGACAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
3UTR CAA 72 bp ACTTGGTTAAACAGATCTTCTGTCAGCTTTGCTTTTTaGGCCAGATTACCAAGGACGAATTCTTTTTCCCTG +
Preference number: 4 (lower is better)
Translates to: TWLNRSSVSFAF*ARLPRTNSFSL
Trigger: CAGGGAAAAAGAATTCGTCCTTGGTAATCTGGCCAAAAAAGCAAAGCTGACAGAAGATCTGTTTAACCAAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS GCA 90 bp GGCCTTGCAAGCTGTGCCTCACCCAAGCTGTTTCCACCACAAGCCTaGAGGATCCGCCGCGCTCGTTTCTTAGCGTCTTCTGGGAAGCTG +
Preference number: 5 (lower is better)
Translates to: GLASCASPKLFPPQA*RIRRARFLASSGKL
Trigger: CAGCTTCCCAGAAGACGCTAAGAAACGAGCGCGGCGGATCCTGCAGGCTTGTGGTGGAAACAGCTTGGGTGAGGCACAGCTTGCAAGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR CAA 90 bp TTTCTCTCTCTGGCTCCGAAAACTCCCTTGACTCGCTGCGTGGGTACCCAGGCTACAGTGGTCTTTGGCTaGCCGCAATGCCCGCCGGAG +
Preference number: 5 (lower is better)
Translates to: FLSLAPKTPLTRCVGTQATVVFG*PQCPPE
Trigger: CTCCGGCGGGCATTGCGGCAAGCCAAAGACCACTGT...AGCCTGGGTACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CAA 90 bp TTCACAACAATGTCCATGGCGGCCTGTCCTGACACTGGCGGACAGAGGCGAACCACATCCTCGAGGGCCTaGCAAGCTGTGCCTCACCCA +
Preference number: 5 (lower is better)
Translates to: FTTMSMAACPDTGGQRRTTSSRA*QAVPHP
Trigger: TGGGTGAGGCACAGCTTGCAAGGCCCTCGAGGATGT...GGTTCGCCTCTGTCCGCCAGTGTCAGGACAGGCCGCCATGGACATTGTTGTGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR CAA 90 bp CTTCACATCTTTCTCTCTCTGGCTCCGAAAACTCCCTTGACTCGCTGCGTGGGTGAGGCGAGCTCCACGTaGCTGGAGTACTCGTGCCCC +
Preference number: 5 (lower is better)
Translates to: LHIFLSLAPKTPLTRCVGEASST*LEYSCP
Trigger: GGGGCACGAGTACTCCAGCAACGTGGAGCTCGCCTC...ACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAAGATGTGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CAA 90 bp TTTCTCTCTCTGGCTCCGAAAACTCCCTTGACTCGCTGCGTGGGTACCCAGGCTGCTCCTTGCAAGGGGTaGCACTGGATCCCTGGGACT +
Preference number: 5 (lower is better)
Translates to: FLSLAPKTPLTRCVGTQAAPCKG*HWIPGT
Trigger: AGTCCCAGGGATCCAGTGCAACCCCTTGCAAGGAGC...AGCCTGGGTACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CAA 90 bp CCTGATGAGATAGGATGCTGTCCGCAGATGAGGGAGGGAGGCAGGAAACTGATGGCTGCCTCCACGGCCTaGGCAGGGATGAGAATCCGA +
Preference number: 5 (lower is better)
Translates to: PDEIGCCPQMREGGRKLMAASTA*AGMRIR
Trigger: TCGGATTCTCATCCCTGCCAAGGCCGTGGAGGCAGC...CATCAGTTTCCTGCCTCCCTCCCTCATCTGCGGACAGCATCCTATCTCATCAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CAA 90 bp GAAGAACTGATGATGCTAAGTAGGAAAGAGCATGCAGGCCTGCGCCTGCTCACATCGATCTCGCCGGCTTaGAGCACGATGGGTCCCCGC +
Preference number: 5 (lower is better)
Translates to: EELMMLSRKEHAGLRLLTSISPA*STMGPR
Trigger: GCGGGGACCCATCGTGCTCAAAGCCGGCGAGATCGA...TGTGAGCAGGCGCAGGCCTGCATGCTCTTTCCTACTTAGCATCATCAGTTCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CAA 90 bp ACCTCTCTCTCCAGTCCTGACAACACTGTTCCCACCTCAATCACACTCTTGGTGTCGATCTCGCCGGCTTaGAGCACGATGGGTCCCCGC +
Preference number: 5 (lower is better)
Translates to: TSLSSPDNTVPTSITLLVSISPA*STMGPR
Trigger: GCGGGGACCCATCGTGCTCAAAGCCGGCGAGATCGA...CACCAAGAGTGTGATTGAGGTGGGAACAGTGTTGTCAGGACTGGAGAGAGAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR CAA 90 bp GCTCCTGCGCGGGAGCTCCGGACAGCTTTCCCACTCTCACTGAAGAACGAGACATCTGGAGAGTACACGTaGTCCTGGTACACCTCATCA +
Preference number: 5 (lower is better)
Translates to: APARELRTAFPLSLKNETSGEYT*SWYTSS
Trigger: TGATGAGGTGTACCAGGACAACGTGTACTCTCCAGA...TGTCTCGTTCTTCAGTGAGAGTGGGAAAGCTGTCCGGAGCTCCCGCGCAGGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CAA 90 bp GCAGTGTGGGACTATAGGGCAGGAGGCTGGTTTCAGCCTTACTCCACAGCCTTCGGCTGTTTAGTAGGTTaGGGTAGGTGCAGAGTGCCA +
Preference number: 5 (lower is better)
Translates to: AVWDYRAGGWFQPYSTAFGCLVG*GRCRVP
Trigger: TGGCACTCTGCACCTACCCAAACCTACTAAACAGCC...GAAGGCTGTGGAGTAAGGCTGAAACCAGCCTCCTGCCCTATAGTCCCACACTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CAA 90 bp GCAGTGTGGGACTATAGGGCAGGAGGCTGGTTTCAGCCTTACTCCACAGCCTTCTCAGTGAATGGTTTTTaGATACCCCGCTGCAGCTCC +
Preference number: 5 (lower is better)
Translates to: AVWDYRAGGWFQPYSTAFSVNGF*IPRCSS
Trigger: GGAGCTGCAGCGGGGTATCAAAAAACCATTCACTGA...GAAGGCTGTGGAGTAAGGCTGAAACCAGCCTCCTGCCCTATAGTCCCACACTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CAA 90 bp CTTCACATCTTTCTCTCTCTGGCTCCGAAAACTCCCTTGACTCGCTGCGTGGGTTATGCACTTTCTGCTTaGTACCTGGCCTGTGGGGTT +
Preference number: 5 (lower is better)
Translates to: LHIFLSLAPKTPLTRCVGYALSA*YLACGV
Trigger: AACCCCACAGGCCAGGTACAAAGCAGAAAGTGCATA...ACCCACGCAGCGAGTCAAGGGAGTTTTCGGAGCCAGAGAGAGAAAGATGTGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CAA 90 bp ACCTCTCTCTCCAGTCCTGACAACACTGTTCCCACCTCAATCACACTCTTGGTGTCAGTGAATGGTTTTTaGATACCCCGCTGCAGCTCC +
Preference number: 5 (lower is better)
Translates to: TSLSSPDNTVPTSITLLVSVNGF*IPRCSS
Trigger: GGAGCTGCAGCGGGGTATCAAAAAACCATTCACTGA...CACCAAGAGTGTGATTGAGGTGGGAACAGTGTTGTCAGGACTGGAGAGAGAGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS-3UTR CAA 90 bp AAAAACAACTTTCAGGGCCTTGGGAAAGGATTGCCTCCATTTTCAGCCCTTGCTTTCACCAGCTGGCCTTaGATCTCGGGGTGCAAATTG +
Preference number: 5 (lower is better)
Translates to: KNNFQGLGKGLPPFSALAFTSWP*ISGCKL
Trigger: CAATTTGCACCCCGAGATCAAAGGCCAGCTGGTGAA...AGCAAGGGCTGAAAATGGAGGCAATCCTTTCCCAAGGCCCTGAAAGTTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS-3UTR CAA 90 bp AAAAACAACTTTCAGGGCCTTGGGAAAGGATTGCCTCCATTTTCAGCCCTTGCTGTCAGCTTTGCTTTTTaGGCCAGATTACCAAGGACG +
Preference number: 5 (lower is better)
Translates to: KNNFQGLGKGLPPFSALAVSFAF*ARLPRT
Trigger: CGTCCTTGGTAATCTGGCCAAAAAAGCAAAGCTGAC...AGCAAGGGCTGAAAATGGAGGCAATCCTTTCCCAAGGCCCTGAAAGTTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS TCA 72 bp GGATGCGGTCTCGAGGGCTGCGCTCCGGTCGCACCTTaGGCGCCGCCGAGGCTTCGGCTGCAGCGCTGCTGT +
Preference number: 6 (lower is better)
Translates to: GCGLEGCAPVAP*APPRLRLQRCC
Trigger: ACAGCAGCGCTGCAGCCGAAGCCTCGGCGGCGCTCAAGGTGCGACCGGAGCGCAGCCCTCGAGACCGCATCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034136.12
ENSMUST00000132932.8
CDS TCA 72 bp CCACCGCCTTCACCTGCGGGTTCATGGACTCCAGGGTaGGGATGCGGTCTCGAGGGCTGCGCTCCGGTCGCA +
Preference number: 6 (lower is better)
Translates to: PPPSPAGSWTPG*GCGLEGCAPVA
Trigger: TGCGACCGGAGCGCAGCCCTCGAGACCGCATCCTCACCCTGGAGTCCATGAACCCGCAGGTGAAGGCGGTGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034136.12
ENSMUST00000132932.8
CDS GCA 72 bp ATGGGTCCCCGCACAGCGTACTCCACCGCCTTCACCTaGGGGTTCATGGACTCCAGGGTGAGGATGCGGTCT +
Preference number: 6 (lower is better)
Translates to: MGPRTAYSTAFT*GFMDSRVRMRS
Trigger: AGACCGCATCCTCACCCTGGAGTCCATGAACCCGCAGGTGAAGGCGGTGGAGTACGCTGTGCGGGGACCCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034136.12
ENSMUST00000132932.8
CDS GCA 72 bp AGCTGTGCCTCACCCAAGCTGTTTCCACCACAAGCCTaGAGGATCCGCCGCGCTCGTTTCTTAGCGTCTTCT +
Preference number: 6 (lower is better)
Translates to: SCASPKLFPPQA*RIRRARFLASS
Trigger: AGAAGACGCTAAGAAACGAGCGCGGCGGATCCTGCAGGCTTGTGGTGGAAACAGCTTGGGTGAGGCACAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132932.8
CDS CAA 90 bp CCTGGTGATAAAGGCTGCCACATCTTCACGGATACAGTTAACGCCTaGGCTAGCACTGTAAGATCCCAAGCTGTTTCCACCACAAGCCTG +
Preference number: 6 (lower is better)
Translates to: PGDKGCHIFTDTVNA*ASTVRSQAVSTTSL
Trigger: CAGGCTTGTGGTGGAAACAGCTTGGGATCTTACAGTGCTAGCCAAGGCGTTAACTGTATCCGTGAAGATGTGGCAGCCTTTATCACCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12
CDS CAA 72 bp AAAGGCTGCCACATCTTCACGGATACAGTTAACGCCTaGGCTAGCACTGTAAGATCCCAAGCTGTTTCCACC +
Preference number: 6 (lower is better)
Translates to: KGCHIFTDTVNA*ASTVRSQAVST
Trigger: GGTGGAAACAGCTTGGGATCTTACAGTGCTAGCCAAGGCGTTAACTGTATCCGTGAAGATGTGGCAGCCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034136.12