Pregenerated sensors for GPSM3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034786Ensembl transcript IDs: ENSMUST00000038244.15, ENSMUST00000150924.2, ENSMUST00000173772.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GGCCGCAGCCCTCACACCCTGTTTAGTAGCTTGACAGCTCAGGATAGAGACTCTGGGGCCTCGGGGGTGTaGAAGGTGGCCCTCTGTTCC | + |
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Preference number: 2 (lower is better) Translates to: GRSPHTLFSSLTAQDRDSGASGV*KVALCS Trigger: GGAACAGAGGGCCACCTTCCACACCCCCGAGGCCCC...AGAGTCTCTATCCTGAGCTGTCAAGCTACTAAACAGGGTGTGAGGGCTGCGGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150924.2 |
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| 3UTR-3UTR CCA 90 bp | TGGGTGGTAAATACAGCAATTTTAGCCGGGTCTTCCATCTCTGGTTACCCCTGCTCGCTTCACCGCCTCTaGGCCCCTCTGCCTTGGGGC | + |
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Preference number: 2 (lower is better) Translates to: WVVNTAILAGSSISGYPCSLHRL*APLPWG Trigger: GCCCCAAGGCAGAGGGGCCCAGAGGCGGTGAAGCGA...GCAGGGGTAACCAGAGATGGAAGACCCGGCTAAAATTGCTGTATTTACCACCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 |
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| 3UTR-3UTR TCA 90 bp | TCCATCTCTGGTTACCCCTGCCAAACAGGGTTGAAGACCTTCGGGGAGTGTCCCATTCGACCTCCACCCTaGACTCTCAGCAGCAACTCC | + |
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Preference number: 2 (lower is better) Translates to: SISGYPCQTGLKTFGECPIRPPP*TLSSNS Trigger: GGAGTTGCTGCTGAGAGTTCAGGGTGGAGGTCGAAT...GGGACACTCCCCGAAGGTCTTCAACCCTGTTTGGCAGGGGTAACCAGAGATGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150924.2 |
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| 3UTR-3UTR CCA 90 bp | CCTTGCTTATCTTCATGGTTAGAGTACTTGTCCCAAGTCCAGTCCCCAGGGAAATCTAGGCGGCGGGACTaGGCTTCGGCCACTAGGTCC | + |
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Preference number: 2 (lower is better) Translates to: PCLSSWLEYLSQVQSPGKSRRRD*ASATRS Trigger: GGACCTAGTGGCCGAAGCCCAGTCCCGCCGCCTAGA...TTTCCCTGGGGACTGGACTTGGGACAAGTACTCTAACCATGAAGATAAGCAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150924.2 |
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| 3UTR-3UTR GCA 90 bp | TCCATCTCTGGTTACCCCTGCCAAACAGGGTTGAAGACCTTCGGGGAGTGTCCCATCTCTGGTTACCCCTaGCAAACAGGGTTGAAGACC | + |
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Preference number: 2 (lower is better) Translates to: SISGYPCQTGLKTFGECPISGYP*QTGLKT Trigger: GGTCTTCAACCCTGTTTGGCAGGGGTAACCAGAGAT...GGGACACTCCCCGAAGGTCTTCAACCCTGTTTGGCAGGGGTAACCAGAGATGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 ENSMUST00000173772.2 |
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| 3UTR-3UTR TCA 90 bp | AGTCCCCAGGGAAAGTGGGTGGTAAATACAGCAATTTTAGCCGGGTCTTCCATCGGAGTGTCCCAGCTTTaGGTCCCAGAGAGAAGGGAC | + |
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Preference number: 2 (lower is better) Translates to: SPQGKWVVNTAILAGSSIGVSQL*VPERRD Trigger: GTCCCTTCTCTCTGGGACTCAAAGCTGGGACACTCC...GATGGAAGACCCGGCTAAAATTGCTGTATTTACCACCCACTTTCCCTGGGGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 ENSMUST00000173772.2 |
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| 3UTR-3UTR TCA 90 bp | TGGGTGGTAAATACAGCAATTTTAGCCGGGTCTTCCATCTCTGGTTACCCCTGCGGAGTGTCCCAGCTTTaGGTCCCAGAGAGAAGGGAC | + |
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Preference number: 2 (lower is better) Translates to: WVVNTAILAGSSISGYPCGVSQL*VPERRD Trigger: GTCCCTTCTCTCTGGGACTCAAAGCTGGGACACTCC...GCAGGGGTAACCAGAGATGGAAGACCCGGCTAAAATTGCTGTATTTACCACCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 ENSMUST00000173772.2 |
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| 3UTR-3UTR TCA 90 bp | TTGTCCCAAGTCCAGTCCCCAGGGAAAGTGGGTGGTAAATACAGCAATTTTAGCGGAGTGTCCCAGCTTTaGGTCCCAGAGAGAAGGGAC | + |
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Preference number: 2 (lower is better) Translates to: LSQVQSPGKVGGKYSNFSGVSQL*VPERRD Trigger: GTCCCTTCTCTCTGGGACTCAAAGCTGGGACACTCC...GCTAAAATTGCTGTATTTACCACCCACTTTCCCTGGGGACTGGACTTGGGACAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 ENSMUST00000173772.2 |
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| 3UTR-3UTR GCA 90 bp | CATCTCTGGTTACCCCTGCCAAACAGGGTTGAAGACCTTCGGGGAGTGTCCCAGGTGTCCACCCTACCTTaGTTATCTTCATGGTTAGAG | + |
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Preference number: 2 (lower is better) Translates to: HLWLPLPNRVEDLRGVSQVSTLP*LSSWLE Trigger: CTCTAACCATGAAGATAAGCAAGGTAGGGTGGACAC...CTGGGACACTCCCCGAAGGTCTTCAACCCTGTTTGGCAGGGGTAACCAGAGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 ENSMUST00000173772.2 |
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| 3UTR CAA 90 bp | GGAGTTGTGTCCACCCTACCTTGCTTATCTTCATGGTTAGAGTACTaGTCCCAAGTCCAGTCCCCAGGGAAAGTGGGTGGTAAATACAGC | + |
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Preference number: 2 (lower is better) Translates to: GVVSTLPCLSSWLEY*SQVQSPGKVGGKYS Trigger: GCTGTATTTACCACCCACTTTCCCTGGGGACTGGACTTGGGACAAGTACTCTAACCATGAAGATAAGCAAGGTAGGGTGGACACAACTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 ENSMUST00000173772.2 |
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| 3UTR-3UTR CCA 90 bp | CCTCTGCCTTGGGGCCTGAGACTGCTAGTGCTGGACAATTGTCTTACTCTTCCCCCTTGCTTATCTTCATaGTTAGAGTACTTGTCCCAA | + |
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Preference number: 2 (lower is better) Translates to: PLPWGLRLLVLDNCLTLPPCLSS*LEYLSQ Trigger: TTGGGACAAGTACTCTAACCATGAAGATAAGCAAGG...GGGAAGAGTAAGACAATTGTCCAGCACTAGCAGTCTCAGGCCCCAAGGCAGAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 |
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| 3UTR-3UTR GCA 90 bp | GGGAAAGTGGGTGGTAAATACAGCAATTTTAGCCGGGTCTTCCATCTCTGGTTAGTGTCCACCCTACCTTaGTTATCTTCATGGTTAGAG | + |
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Preference number: 2 (lower is better) Translates to: GKVGGKYSNFSRVFHLWLVSTLP*LSSWLE Trigger: CTCTAACCATGAAGATAAGCAAGGTAGGGTGGACAC...TAACCAGAGATGGAAGACCCGGCTAAAATTGCTGTATTTACCACCCACTTTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 ENSMUST00000173772.2 |
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| 3UTR-3UTR CCA 90 bp | TGGGTGGTAAATACAGCAATTTTAGCCGGGTCTTCCATCTCTGGTTACCCCTGCCCTTGCTTATCTTCATaGTTAGAGTACTTGTCCCAA | + |
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Preference number: 2 (lower is better) Translates to: WVVNTAILAGSSISGYPCPCLSS*LEYLSQ Trigger: TTGGGACAAGTACTCTAACCATGAAGATAAGCAAGG...GCAGGGGTAACCAGAGATGGAAGACCCGGCTAAAATTGCTGTATTTACCACCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 ENSMUST00000173772.2 |
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| 3UTR CCA 72 bp | GGGCTAGGTTTGGTGGGGCCTCGGGGGTGTGGAAGGTaGCCCTCTGTTCCTCTAGGCGGCGGGACTGGGCTT | + |
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Preference number: 3 (lower is better) Translates to: GLGLVGPRGCGR*PSVPLGGGTGL Trigger: AAGCCCAGTCCCGCCGCCTAGAGGAACAGAGGGCCACCTTCCACACCCCCGAGGCCCCACCAAACCTAGCCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150924.2 |
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| 3UTR-3UTR CAA 90 bp | CATCTCTGGTTACCCCTGCCAAACAGGGTTGAAGACCTTCGGGGAGTGTCCCAGCCCTGCCAAACAGGGTaGAAGACCTTCGGGGAGTGT | + |
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Preference number: 3 (lower is better) Translates to: HLWLPLPNRVEDLRGVSQPCQTG*KTFGEC Trigger: ACACTCCCCGAAGGTCTTCAACCCTGTTTGGCAGGG...CTGGGACACTCCCCGAAGGTCTTCAACCCTGTTTGGCAGGGGTAACCAGAGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 ENSMUST00000173772.2 |
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| 3UTR-3UTR CAA 90 bp | CCTCTGCCTTGGGGCCTGAGACTGCTAGTGCTGGACAATTGTCTTACTCTTCCCGGGAGTGTCCCAGCTTaGAGTCCCAGAGAGAAGGGA | + |
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Preference number: 3 (lower is better) Translates to: PLPWGLRLLVLDNCLTLPGSVPA*SPREKG Trigger: TCCCTTCTCTCTGGGACTCAAAGCTGGGACACTCCC...GGGAAGAGTAAGACAATTGTCCAGCACTAGCAGTCTCAGGCCCCAAGGCAGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 |
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| 3UTR-3UTR CAA 90 bp | GGCCGCAGCCCTCACACCCTGTTTAGTAGCTTGACAGCTCAGGATAGAGACTCTCCCTGCCAAACAGGGTaGAAGACCTTCGGGGAGTGT | + |
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Preference number: 3 (lower is better) Translates to: GRSPHTLFSSLTAQDRDSPCQTG*KTFGEC Trigger: ACACTCCCCGAAGGTCTTCAACCCTGTTTGGCAGGG...AGAGTCTCTATCCTGAGCTGTCAAGCTACTAAACAGGGTGTGAGGGCTGCGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 ENSMUST00000173772.2 |
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| 3UTR-3UTR CAA 90 bp | TGGGTGGTAAATACAGCAATTTTAGCCGGGTCTTCCATCTCTGGTTACCCCTGCCTGGGCCCCTCTGCCTaGGGGCCTGAGACTGCTAGT | + |
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Preference number: 3 (lower is better) Translates to: WVVNTAILAGSSISGYPCLGPSA*GPETAS Trigger: ACTAGCAGTCTCAGGCCCCAAGGCAGAGGGGCCCAG...GCAGGGGTAACCAGAGATGGAAGACCCGGCTAAAATTGCTGTATTTACCACCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 |
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| 3UTR-3UTR CAA 90 bp | CAAGTCCAGTCCCCAGGGAAAGTGGGTGGTAAATACAGCAATTTTAGCCGGGTCGGGAGTGTCCCAGCTTaGAGTCCCAGAGAGAAGGGA | + |
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Preference number: 3 (lower is better) Translates to: QVQSPGKVGGKYSNFSRVGSVPA*SPREKG Trigger: TCCCTTCTCTCTGGGACTCAAAGCTGGGACACTCCC...GACCCGGCTAAAATTGCTGTATTTACCACCCACTTTCCCTGGGGACTGGACTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 ENSMUST00000173772.2 |
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| 3UTR CCA 72 bp | TCGGGAGTTGTGTCCACCCTACCTTGCTTATCTTCATaGTTAGAGTACTTGTCCCAAGTCCAGTCCCCAGGG | + |
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Preference number: 3 (lower is better) Translates to: SGVVSTLPCLSS*LEYLSQVQSPG Trigger: CCCTGGGGACTGGACTTGGGACAAGTACTCTAACCATGAAGATAAGCAAGGTAGGGTGGACACAACTCCCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 ENSMUST00000173772.2 |
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| 3UTR-3UTR CAA 90 bp | GGGAAAGTGGGTGGTAAATACAGCAATTTTAGCCGGGTCTTCCATCTCTGGTTACCCTGCCAAACAGGGTaGAAGACCTTCGGGGAGTGT | + |
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Preference number: 3 (lower is better) Translates to: GKVGGKYSNFSRVFHLWLPCQTG*KTFGEC Trigger: ACACTCCCCGAAGGTCTTCAACCCTGTTTGGCAGGG...TAACCAGAGATGGAAGACCCGGCTAAAATTGCTGTATTTACCACCCACTTTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 ENSMUST00000173772.2 |
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| 3UTR CCA 72 bp | GGTAAATACAGCAATTTTAGCCGGGTCTTCCATCTCTaGTTACCCCTGCCAAACAGGGTTGAAGACCTTCGG | + |
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Preference number: 3 (lower is better) Translates to: GKYSNFSRVFHL*LPLPNRVEDLR Trigger: CCGAAGGTCTTCAACCCTGTTTGGCAGGGGTAACCAGAGATGGAAGACCCGGCTAAAATTGCTGTATTTACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 ENSMUST00000173772.2 |
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| CDS-3UTR CCA 90 bp | GGGAGTGTCCCAGCTTTGAGTCCCAGAGAGAAGGGACTGGTGAGGAGCTCCGGTTCTAGGCGGCGGGACTaGGCTTCGGCCACTAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: GSVPALSPREKGLVRSSGSRRRD*ASATRS Trigger: GGACCTAGTGGCCGAAGCCCAGTCCCGCCGCCTAGA...ACCGGAGCTCCTCACCAGTCCCTTCTCTCTGGGACTCAAAGCTGGGACACTCCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038244.15 |
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| CDS-3UTR CCA 90 bp | ACCTTCGGGGAGTGTCCCAGCTTTGAGTCCCAGAGAGAAGGGACTGGTGAGGAGGGCGGGTCAGACCGTTaGGCTTCAATCCGCTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: TFGECPSFESQREGTGEEGGSDR*ASIRWH Trigger: GTGCCAGCGGATTGAAGCCCAACGGTCTGACCCGCC...CTCCTCACCAGTCCCTTCTCTCTGGGACTCAAAGCTGGGACACTCCCCGAAGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038244.15 ENSMUST00000173772.2 |
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| CDS-3UTR CCA 90 bp | TCCATCTCTGGTTACCCCTGCCAAACAGGGTTGAAGACCTTCGGGGAGTGTCCCGGCGGGTCAGACCGTTaGGCTTCAATCCGCTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: SISGYPCQTGLKTFGECPGGSDR*ASIRWH Trigger: GTGCCAGCGGATTGAAGCCCAACGGTCTGACCCGCC...GGGACACTCCCCGAAGGTCTTCAACCCTGTTTGGCAGGGGTAACCAGAGATGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038244.15 ENSMUST00000173772.2 |
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| CDS-3UTR GCA 90 bp | GTCTTCCATCTCTGGTTACCCCTGCCAAACAGGGTTGAAGACCTTCGGGGAGTGGGAGGCCGGGATCTCTaGTCCTCCATTCGACCTCCA | + |
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Preference number: 4 (lower is better) Translates to: VFHLWLPLPNRVEDLRGVGGRDL*SSIRPP Trigger: TGGAGGTCGAATGGAGGAGCAGAGATCCCGGCCTCC...CACTCCCCGAAGGTCTTCAACCCTGTTTGGCAGGGGTAACCAGAGATGGAAGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038244.15 ENSMUST00000173772.2 |
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| CDS-3UTR CCA 90 bp | ACCCTACCTTGCTTATCTTCATGGTTAGAGTACTTGTCCCAAGTCCAGTCCCCAGGGGCCTCGGGGGTGTaGAAGGTGGCCCTCTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: TLPCLSSWLEYLSQVQSPGASGV*KVALCS Trigger: GGAACAGAGGGCCACCTTCCACACCCCCGAGGCCCC...TGGGGACTGGACTTGGGACAAGTACTCTAACCATGAAGATAAGCAAGGTAGGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038244.15 |
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| 3UTR CAA 72 bp | GGGTCTTCCATCTCTGGTTACCCCTGCCAAACAGGGTaGAAGACCTTCGGGGAGTGTCCCAGCTTTGAGTCC | + |
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Preference number: 4 (lower is better) Translates to: GSSISGYPCQTG*KTFGECPSFES Trigger: GGACTCAAAGCTGGGACACTCCCCGAAGGTCTTCAACCCTGTTTGGCAGGGGTAACCAGAGATGGAAGACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 ENSMUST00000173772.2 |
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| CDS-3UTR GCA 90 bp | CTACCTTGCTTATCTTCATGGTTAGAGTACTTGTCCCAAGTCCAGTCCCCAGGGGGAGGCCGGGATCTCTaGTCCTCCATTCGACCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LPCLSSWLEYLSQVQSPGGGRDL*SSIRPP Trigger: TGGAGGTCGAATGGAGGAGCAGAGATCCCGGCCTCC...CCCTGGGGACTGGACTTGGGACAAGTACTCTAACCATGAAGATAAGCAAGGTAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038244.15 ENSMUST00000173772.2 |
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| 3UTR CAA 72 bp | TCCACCCTACCTTGCTTATCTTCATGGTTAGAGTACTaGTCCCAAGTCCAGTCCCCAGGGAAAGTGGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: STLPCLSSWLEY*SQVQSPGKVGG Trigger: ACCACCCACTTTCCCTGGGGACTGGACTTGGGACAAGTACTCTAACCATGAAGATAAGCAAGGTAGGGTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 ENSMUST00000173772.2 |
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| CDS-3UTR TCA 90 bp | GGGAAAGTGGGTGGTAAATACAGCAATTTTAGCCGGGTCTTCCATCTCTGGTTAATTCGACCTCCACCCTaGACTCTCAGCAGCAACTCC | + |
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Preference number: 4 (lower is better) Translates to: GKVGGKYSNFSRVFHLWLIRPPP*TLSSNS Trigger: GGAGTTGCTGCTGAGAGTTCAGGGTGGAGGTCGAAT...TAACCAGAGATGGAAGACCCGGCTAAAATTGCTGTATTTACCACCCACTTTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038244.15 ENSMUST00000173772.2 |
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| 3UTR CAA 72 bp | TCTTTAACTGTCCTCGGGAGTTGTGTCCACCCTACCTaGCTTATCTTCATGGTTAGAGTACTTGTCCCAAGT | + |
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Preference number: 4 (lower is better) Translates to: SLTVLGSCVHPT*LIFMVRVLVPS Trigger: ACTTGGGACAAGTACTCTAACCATGAAGATAAGCAAGGTAGGGTGGACACAACTCCCGAGGACAGTTAAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 ENSMUST00000173772.2 |
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| CDS GCA 90 bp | CGGCGGGACTGGGCTTCGGCCACTAGGTCCAGAAGGAGCTCAGTCTaGAGGGAGAGCAGGGAGCCAGAACGGGGCCCTAGGGCTGTGTGT | + |
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Preference number: 5 (lower is better) Translates to: RRDWASATRSRRSSV*RESREPERGPRAVC Trigger: ACACACAGCCCTAGGGCCCCGTTCTGGCTCCCTGCTCTCCCTGCAGACTGAGCTCCTTCTGGACCTAGTGGCCGAAGCCCAGTCCCGCCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038244.15 |
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| CDS CCA 90 bp | TCGGGGGTGTGGAAGGTGGCCCTCTGTTCCTCTAGGCGGCGGGACTaGGCTTCGGCCACTAGGTCCAGAAGGAGCTCAGTCTGCAGGGAG | + |
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Preference number: 5 (lower is better) Translates to: SGVWKVALCSSRRRD*ASATRSRRSSVCRE Trigger: CTCCCTGCAGACTGAGCTCCTTCTGGACCTAGTGGCCGAAGCCCAGTCCCGCCGCCTAGAGGAACAGAGGGCCACCTTCCACACCCCCGA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038244.15 |
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| CDS TCA 90 bp | GCAGATCTCCAAGGCCGAGCGGTGGCATTCACAGGGGGCCATCCCTaGTCATCCTGCGGGAGACTCTGTTCACCATCTTCTTCCTGGGGT | + |
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Preference number: 5 (lower is better) Translates to: ADLQGRAVAFTGGHP*SSCGRLCSPSSSWG Trigger: ACCCCAGGAAGAAGATGGTGAACAGAGTCTCCCGCAGGATGATCAGGGATGGCCCCCTGTGAATGCCACCGCTCGGCCTTGGAGATCTGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038244.15 ENSMUST00000150924.2 |
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| CDS-3UTR CAA 90 bp | GGCCGCAGCCCTCACACCCTGTTTAGTAGCTTGACAGCTCAGGATAGAGACTCTGGGCGGGTCAGACCGTaGGGCTTCAATCCGCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: GRSPHTLFSSLTAQDRDSGRVRP*GFNPLA Trigger: TGCCAGCGGATTGAAGCCCAACGGTCTGACCCGCCC...AGAGTCTCTATCCTGAGCTGTCAAGCTACTAAACAGGGTGTGAGGGCTGCGGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038244.15 ENSMUST00000173772.2 |
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| CDS-3UTR CAA 90 bp | ACCCTACCTTGCTTATCTTCATGGTTAGAGTACTTGTCCCAAGTCCAGTCCCCAGGGCGGGTCAGACCGTaGGGCTTCAATCCGCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: TLPCLSSWLEYLSQVQSPGRVRP*GFNPLA Trigger: TGCCAGCGGATTGAAGCCCAACGGTCTGACCCGCCC...TGGGGACTGGACTTGGGACAAGTACTCTAACCATGAAGATAAGCAAGGTAGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038244.15 ENSMUST00000173772.2 |
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| CDS CCA 72 bp | TGGAAGGTGGCCCTCTGTTCCTCTAGGCGGCGGGACTaGGCTTCGGCCACTAGGTCCAGAAGGAGCTCAGTC | + |
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Preference number: 6 (lower is better) Translates to: WKVALCSSRRRD*ASATRSRRSSV Trigger: GACTGAGCTCCTTCTGGACCTAGTGGCCGAAGCCCAGTCCCGCCGCCTAGAGGAACAGAGGGCCACCTTCCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038244.15 |
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