Pregenerated sensors for GPS2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023170Ensembl transcript IDs: ENSMUST00000057884.6, ENSMUST00000072581.9, ENSMUST00000116358.8, ENSMUST00000134581.2
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GATGGAGGGTGGGCTGGAGCTCTCTGGTGGTTACTTGTGATAGAATCTTGGGTTCCCCAGCCTGAGGGATaGAGGGTGGGCTGGAGCTCT | + |
|
Preference number: 2 (lower is better) Translates to: DGGWAGALWWLLVIESWVPQPEG*RVGWSS Trigger: AGAGCTCCAGCCCACCCTCCATCCCTCAGGCTGGGG...AACCCAAGATTCTATCACAAGTAACCACCAGAGAGCTCCAGCCCACCCTCCATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134581.2 |
||
| 3UTR-3UTR CCA 90 bp | TGGGCTGGAGCTCTCTGGTGGTTACTTGTGATAGAATCTTGGGTTCTGGCTGTGAGTCGGGGGCCAGGTTaGCTGGTGGTGGCAAAGCCT | + |
|
Preference number: 2 (lower is better) Translates to: WAGALWWLLVIESWVLAVSRGPG*LVVAKP Trigger: AGGCTTTGCCACCACCAGCCAACCTGGCCCCCGACT...CACAGCCAGAACCCAAGATTCTATCACAAGTAACCACCAGAGAGCTCCAGCCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000134581.2 |
||
| 3UTR-3UTR CCA 90 bp | GATGGAGGGTGGGCTGGAGCTCTCTGGTGGTTACTTGTGATAGAATCTTGGGTTCAGGTTGGCTGGTGGTaGCAAAGCCTGACTGGTAAT | + |
|
Preference number: 2 (lower is better) Translates to: DGGWAGALWWLLVIESWVQVGWW*QSLTGN Trigger: ATTACCAGTCAGGCTTTGCCACCACCAGCCAACCTG...AACCCAAGATTCTATCACAAGTAACCACCAGAGAGCTCCAGCCCACCCTCCATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134581.2 |
||
| 3UTR-3UTR CAA 90 bp | GGCTGGAGCTCTCTGGTGGTTACTTGTGATAGAATCTTGGGTTCTGGCTGTGTTGAGTCGGGGGCCAGGTaGGCTGGTGGTGGCAAAGCC | + |
|
Preference number: 3 (lower is better) Translates to: GWSSLVVTCDRILGSGCVESGAR*AGGGKA Trigger: GGCTTTGCCACCACCAGCCAACCTGGCCCCCGACTC...AACACAGCCAGAACCCAAGATTCTATCACAAGTAACCACCAGAGAGCTCCAGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000134581.2 |
||
| 3UTR CCA 72 bp | CACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTaGAGCTCTCTGGTGGTTACTTGTGATAGAATCTTG | + |
|
Preference number: 3 (lower is better) Translates to: HIRPQPEGWRVG*SSLVVTCDRIL Trigger: CAAGATTCTATCACAAGTAACCACCAGAGAGCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134581.2 |
||
| CDS-3UTR TCA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCGCTCCCGCTCCATCATaGTGTGCCGGTGCAGAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSAPAPS*CAGAEP Trigger: GGGCTCTGCACCGGCACATCATGATGGAGCGGGAGC...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR GCA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCCGCTCCATCATGATGTaGCGGTGCAGAGCCCTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSRSIMM*RCRALA Trigger: GGCCAGGGCTCTGCACCGGCACATCATGATGGAGCG...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CCA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCAGTCGGGGGCCAGGTTaGCTGGTGGTGGCAAAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSSRGPG*LVVAKP Trigger: AGGCTTTGCCACCACCAGCCAACCTGGCCCCCGACT...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR TCA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGGCTCCCGCTCCATCATaGTGTGCCGGTGCAGAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWAPAPS*CAGAEP Trigger: GGGCTCTGCACCGGCACATCATGATGGAGCGGGAGC...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR TCA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCTCTGGCTGTGTTGGATaGAAGGGAGTCGGGGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSSGCVG*KGVGGQ Trigger: CTGGCCCCCGACTCCCTTTCATCCAACACAGCCAGA...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR TCA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCAGGTGGGTTCCTGTATaGACCGTCAGGCTCTGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSRWVPV*TVRLCW Trigger: CCAGCAGAGCCTGACGGTTCATACAGGAACCCACCT...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR GCA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGCGCTCCATCATGATGTaGCGGTGCAGAGCCCTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWRSIMM*RCRALA Trigger: GGCCAGGGCTCTGCACCGGCACATCATGATGGAGCG...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CCA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGTCGGGGGCCAGGTTaGCTGGTGGTGGCAAAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWSRGPG*LVVAKP Trigger: AGGCTTTGCCACCACCAGCCAACCTGGCCCCCGACT...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CCA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCGGGTTCTGGCTGTGTTaGATGAAAGGGAGTCGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSGFWLC*MKGSRG Trigger: CCCCCGACTCCCTTTCATCCAACACAGCCAGAACCC...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR TCA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGGGCTCCCCTGCATGCTaGGGAGGTGGGTTCCTGTAT | + |
|
Preference number: 4 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWGSPAC*GGGFLY Trigger: ATACAGGAACCCACCTCCTCAGCATGCAGGGGAGCC...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR TCA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCGGTGGTGGCAAAGCCTaGCTTCCCTGCTGCTTGTAT | + |
|
Preference number: 4 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSGGGKA*LPCCLY Trigger: ATACAAGCAGCAGGGAAGTCAGGCTTTGCCACCACC...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR TCA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGTCTGGCTGTGTTGGATaGAAGGGAGTCGGGGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWSGCVG*KGVGGQ Trigger: CTGGCCCCCGACTCCCTTTCATCCAACACAGCCAGA...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR GCA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCTCCGAGAAGCTGGTCTaGTGGTTGGCATGCTCCATC | + |
|
Preference number: 4 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSSEKLV*WLACSI Trigger: GATGGAGCATGCCAACCAGCAGACCAGCTTCTCGGA...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR TCA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGGTGGGTTCCTGTATaGACCGTCAGGCTCTGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWRWVPV*TVRLCW Trigger: CCAGCAGAGCCTGACGGTTCATACAGGAACCCACCT...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR GCA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCAAAGTGGCCATGCACTaGATAGGGTTGTGGCTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSKVAMH*IGLWLW Trigger: CCACAGCCACAACCCTATGCAGTGCATGGCCACTTT...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CCA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGATCTGTACGGGAAGCTaGGGGGAAGCCAGGAGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWICTGS*GEARSP Trigger: TGGACTCCTGGCTTCCCCCCAGCTTCCCGTACAGAT...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CCA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGGGGTTCTGGCTGTGTTaGATGAAAGGGAGTCGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWGFWLC*MKGSRG Trigger: CCCCCGACTCCCTTTCATCCAACACAGCCAGAACCC...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR TCA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGGGTGGTGGCAAAGCCTaGCTTCCCTGCTGCTTGTAT | + |
|
Preference number: 4 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWGGGKA*LPCCLY Trigger: ATACAAGCAGCAGGGAAGTCAGGCTTTGCCACCACC...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR GCA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCTGCTCCATCTGTTTCTaGAAAGAGAGGGTACTGCCG | + |
|
Preference number: 4 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSCSICF*KERVLP Trigger: CGGCAGTACCCTCTCTTTGCAGAAACAGATGGAGCA...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR GCA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGTCCGAGAAGCTGGTCTaGTGGTTGGCATGCTCCATC | + |
|
Preference number: 4 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWSEKLV*WLACSI Trigger: GATGGAGCATGCCAACCAGCAGACCAGCTTCTCGGA...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR GCA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAAAGTGGCCATGCACTaGATAGGGTTGTGGCTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWKVAMH*IGLWLW Trigger: CCACAGCCACAACCCTATGCAGTGCATGGCCACTTT...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CCA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCAGCTGCAAGAAAAGCTaGTGCTTCTCCTCCTGTAGA | + |
|
Preference number: 4 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSSCKKS*CFSSCR Trigger: TCTACAGGAGGAGAAGCACCAGCTTTTCTTGCAGCT...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CCA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCGCTAGGACTATAGGCTaGTTGTGTTGGCCCATAATG | + |
|
Preference number: 4 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSARTIG*LCWPIM Trigger: CATTATGGGCCAACACAACCAGCCTATAGTCCTAGC...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR GCA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGGCAGAAAGCTTCTCCTaGAGCTTCAGGATCTGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWAESFS*SFRICS Trigger: GGAACAGATCCTGAAGCTGCAGGAGAAGCTTTCTGC...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR GCA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGTGCTCCATCTGTTTCTaGAAAGAGAGGGTACTGCCG | + |
|
Preference number: 4 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWCSICF*KERVLP Trigger: CGGCAGTACCCTCTCTTTGCAGAAACAGATGGAGCA...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CCA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCTCAGGATCTGTTCCTTaGTCTCCTCTAGTGACATTC | + |
|
Preference number: 4 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSSGSVP*SPLVTF Trigger: GAATGTCACTAGAGGAGACCAAGGAACAGATCCTGA...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CCA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCCAGCTGATGTCAGAGTaGTTAAGTCACTCTGTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSQLMSE*LSHSVP Trigger: AGGAACAGAGTGACTTAACCACTCTGACATCAGCTG...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CCA 90 bp | GATGGAGGGTGGGCTGGAGCTCTCTGGTGGTTACTTGTGATAGAATCTTGGGTTATCTGTACGGGAAGCTaGGGGGAAGCCAGGAGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: DGGWAGALWWLLVIESWVICTGS*GEARSP Trigger: TGGACTCCTGGCTTCCCCCCAGCTTCCCGTACAGAT...AACCCAAGATTCTATCACAAGTAACCACCAGAGAGCTCCAGCCCACCCTCCATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000134581.2 |
||
| CDS-3UTR GCA 90 bp | TGGGCTGGAGCTCTCTGGTGGTTACTTGTGATAGAATCTTGGGTTCTGGCTGTGTCCGAGAAGCTGGTCTaGTGGTTGGCATGCTCCATC | + |
|
Preference number: 4 (lower is better) Translates to: WAGALWWLLVIESWVLAVSEKLV*WLACSI Trigger: GATGGAGCATGCCAACCAGCAGACCAGCTTCTCGGA...CACAGCCAGAACCCAAGATTCTATCACAAGTAACCACCAGAGAGCTCCAGCCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134581.2 |
||
| CDS-3UTR CCA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGGCTAGGACTATAGGCTaGTTGTGTTGGCCCATAATG | + |
|
Preference number: 4 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWARTIG*LCWPIM Trigger: CATTATGGGCCAACACAACCAGCCTATAGTCCTAGC...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CCA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGTCAGGATCTGTTCCTTaGTCTCCTCTAGTGACATTC | + |
|
Preference number: 4 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWSGSVP*SPLVTF Trigger: GAATGTCACTAGAGGAGACCAAGGAACAGATCCTGA...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CCA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGCAGCTGATGTCAGAGTaGTTAAGTCACTCTGTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWQLMSE*LSHSVP Trigger: AGGAACAGAGTGACTTAACCACTCTGACATCAGCTG...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR GCA 90 bp | TGGGCTGGAGCTCTCTGGTGGTTACTTGTGATAGAATCTTGGGTTCTGGCTGTGTGCTCCATCTGTTTCTaGAAAGAGAGGGTACTGCCG | + |
|
Preference number: 4 (lower is better) Translates to: WAGALWWLLVIESWVLAVCSICF*KERVLP Trigger: CGGCAGTACCCTCTCTTTGCAGAAACAGATGGAGCA...CACAGCCAGAACCCAAGATTCTATCACAAGTAACCACCAGAGAGCTCCAGCCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134581.2 |
||
| CDS-3UTR GCA 90 bp | GGCTGGAGCTCTCTGGTGGTTACTTGTGATAGAATCTTGGGTTCTGGCTGTGTTCAGCCTTACCTTCCCTaGTGCTTGTATCTGTACGGG | + |
|
Preference number: 4 (lower is better) Translates to: GWSSLVVTCDRILGSGCVQPYLP*CLYLYG Trigger: CCCGTACAGATACAAGCAGCAGGGAAGGTAAGGCTG...AACACAGCCAGAACCCAAGATTCTATCACAAGTAACCACCAGAGAGCTCCAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134581.2 |
||
| CDS-3UTR CAA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCGAGTCGGGGGCCAGGTaGGCTGGTGGTGGCAAAGCC | + |
|
Preference number: 5 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSESGAR*AGGGKA Trigger: GGCTTTGCCACCACCAGCCAACCTGGCCCCCGACTC...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CAA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGGAGTCGGGGGCCAGGTaGGCTGGTGGTGGCAAAGCC | + |
|
Preference number: 5 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWESGAR*AGGGKA Trigger: GGCTTTGCCACCACCAGCCAACCTGGCCCCCGACTC...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CAA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGTCCTCCTCCTGCCGTTaGCGCTCCCGCTCCATCATG | + |
|
Preference number: 5 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWSSSCR*RSRSIM Trigger: CATGATGGAGCGGGAGCGCAAACGGCAGGAGGAGGA...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CAA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCTGGGTTCTGGCTGTGTaGGATGAAAGGGAGTCGGGG | + |
|
Preference number: 5 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSWVLAV*DERESG Trigger: CCCCGACTCCCTTTCATCCAACACAGCCAGAACCCA...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CAA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCAAGCTGGTCTGCTGGTaGGCATGCTCCATCTGTTTC | + |
|
Preference number: 5 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSKLVCW*ACSICF Trigger: GAAACAGATGGAGCATGCCAACCAGCAGACCAGCTT...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CAA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGTGGGTTCTGGCTGTGTaGGATGAAAGGGAGTCGGGG | + |
|
Preference number: 5 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWWVLAV*DERESG Trigger: CCCCGACTCCCTTTCATCCAACACAGCCAGAACCCA...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CAA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCTTCTGTTCCATCATCTaGTCCACCTCTTCCTCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSFCSII*STSSSS Trigger: GGAGGAGGAAGAGGTGGACAAGATGATGGAACAGAA...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CAA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAAGCTGGTCTGCTGGTaGGCATGCTCCATCTGTTTC | + |
|
Preference number: 5 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWKLVCW*ACSICF Trigger: GAAACAGATGGAGCATGCCAACCAGCAGACCAGCTT...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CAA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGTTCTGTTCCATCATCTaGTCCACCTCTTCCTCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWFCSII*STSSSS Trigger: GGAGGAGGAAGAGGTGGACAAGATGATGGAACAGAA...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CAA 90 bp | ATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGAGCTTCAGGATCTGTTCCTaGGTCTCCTCTAGTGACATT | + |
|
Preference number: 5 (lower is better) Translates to: IGLGHIRPQPEGWRVGWSFRICS*VSSSDI Trigger: AATGTCACTAGAGGAGACCAAGGAACAGATCCTGAA...GCTCCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CAA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGTTCAGGATCTGTTCCTaGGTCTCCTCTAGTGACATT | + |
|
Preference number: 5 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWFRICS*VSSSDI Trigger: AATGTCACTAGAGGAGACCAAGGAACAGATCCTGAA...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CAA 90 bp | TTTATTGGTTTGGGGCACATAAGACCCCAGCCTGAGGGATGGAGGGTGGGCTGGTCATGCAAAACTTTCTaGAGCTGCAAGAAAAGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: FIGLGHIRPQPEGWRVGWSCKTF*SCKKSW Trigger: CCAGCTTTTCTTGCAGCTCAAGAAAGTTTTGCATGA...CCAGCCCACCCTCCATCCCTCAGGCTGGGGTCTTATGTGCCCCAAACCAATAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||
| CDS-3UTR CAA 90 bp | GGCTGGAGCTCTCTGGTGGTTACTTGTGATAGAATCTTGGGTTCTGGCTGTGTTAAGCTGGTCTGCTGGTaGGCATGCTCCATCTGTTTC | + |
|
Preference number: 5 (lower is better) Translates to: GWSSLVVTCDRILGSGCVKLVCW*ACSICF Trigger: GAAACAGATGGAGCATGCCAACCAGCAGACCAGCTT...AACACAGCCAGAACCCAAGATTCTATCACAAGTAACCACCAGAGAGCTCCAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134581.2 |
||
| CDS-3UTR CAA 90 bp | GATGGAGGGTGGGCTGGAGCTCTCTGGTGGTTACTTGTGATAGAATCTTGGGTTGTAGTATATGTAGGTTaGATTGCCAGCCTTACCTTC | + |
|
Preference number: 5 (lower is better) Translates to: DGGWAGALWWLLVIESWVVVYVG*IASLTF Trigger: GAAGGTAAGGCTGGCAATCAAACCTACATATACTAC...AACCCAAGATTCTATCACAAGTAACCACCAGAGAGCTCCAGCCCACCCTCCATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134581.2 |
||
| CDS CAA 90 bp | TGCATGGGCCGCAGAGAAGATGAGTCCGAGAAGCTGGTCTGCTGGTaGGCATGCTCCATCTGTTTCTGCAAAGAGAGGGTACTGCCGGGC | + |
|
Preference number: 6 (lower is better) Translates to: CMGRREDESEKLVCW*ACSICFCKERVLPG Trigger: GCCCGGCAGTACCCTCTCTTTGCAGAAACAGATGGAGCATGCCAACCAGCAGACCAGCTTCTCGGACTCATCTTCTCTGCGGCCCATGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 ENSMUST00000134581.2 |
||
| CDS CCA 72 bp | GGCCGCAGAGAAGATGAGTCCGAGAAGCTGGTCTGCTaGTTGGCATGCTCCATCTGTTTCTGCAAAGAGAGG | + |
|
Preference number: 6 (lower is better) Translates to: GRREDESEKLVC*LACSICFCKER Trigger: CCTCTCTTTGCAGAAACAGATGGAGCATGCCAACCAGCAGACCAGCTTCTCGGACTCATCTTCTCTGCGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 ENSMUST00000134581.2 |
||
| CDS CAA 72 bp | CGCAGAGAAGATGAGTCCGAGAAGCTGGTCTGCTGGTaGGCATGCTCCATCTGTTTCTGCAAAGAGAGGGTA | + |
|
Preference number: 6 (lower is better) Translates to: RREDESEKLVCW*ACSICFCKERV Trigger: TACCCTCTCTTTGCAGAAACAGATGGAGCATGCCAACCAGCAGACCAGCTTCTCGGACTCATCTTCTCTGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 ENSMUST00000134581.2 |
||
| CDS CAA 90 bp | TTCTTTCTTCTCTCCTGCTCTTCTTTCATCTTCTGTTCCATCATCTaGTCCACCTCTTCCTCCTCCTGCCGTTTGCGCTCCCGCTCCATC | + |
|
Preference number: 6 (lower is better) Translates to: FFLLSCSSFIFCSII*STSSSSCRLRSRSI Trigger: GATGGAGCGGGAGCGCAAACGGCAGGAGGAGGAAGAGGTGGACAAGATGATGGAACAGAAGATGAAAGAAGAGCAGGAGAGAAGAAAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057884.6 ENSMUST00000072581.9 ENSMUST00000116358.8 |
||