RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GPRIN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000069227

Ensembl transcript IDs: ENSMUST00000099506.2, ENSMUST00000135343.2

Found 267 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCCCACTGGAAGCCTCAAACCACCAGTCTGGCCATCTCAGGAGCCTaGCTCAGCTGTAGGGTGAAAGGGTGGGAGCAGGTCCCTGTGCTC +
Preference number: 1 (lower is better)
Translates to: AHWKPQTTSLAISGA*LSCRVKGWEQVPVL
Trigger: GAGCACAGGGACCTGCTCCCACCCTTTCACCCTACAGCTGAGGCAGGCTCCTGAGATGGCCAGACTGGTGGTTTGAGGCTTCCAGTGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR CCA 90 bp AGACAGGGATGGGGTAGGACTACCAACAGCATGCAACAGATGCCCTaGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGA +
Preference number: 1 (lower is better)
Translates to: RQGWGRTTNSMQQMP*PRGQHHVETLTAQR
Trigger: TCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCCAGGGCATCTGTTGCATGCTGTTGGTAGTCCTACCCCATCCCTGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR CCA 90 bp GTCAGGGCTGGGTGTGTGGGCTCCTGGCCACAAAGGGACTGGATATaGGGTTTTCCGTCAGTGTTTGGGAAGGAAGGGCCTGGAAAGAAG +
Preference number: 1 (lower is better)
Translates to: VRAGCVGSWPQRDWI*GFPSVFGKEGPGKK
Trigger: CTTCTTTCCAGGCCCTTCCTTCCCAAACACTGACGGAAAACCCCATATCCAGTCCCTTTGTGGCCAGGAGCCCACACACCCAGCCCTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR CCA 90 bp AGAGGGATAAGAGGGGAATCTTTAAAGACAACCGTGGATATCAAATaGGACCTCCATCCTGTTCCCAATACCCAAGACCAGCTGTCACCC +
Preference number: 1 (lower is better)
Translates to: RGIRGESLKTTVDIK*DLHPVPNTQDQLSP
Trigger: GGGTGACAGCTGGTCTTGGGTATTGGGAACAGGATGGAGGTCCCATTTGATATCCACGGTTGTCTTTAAAGATTCCCCTCTTATCCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR GCA 90 bp GGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTGGGAGCAGGTCCCTGTaGTCTTCCCGTAGTTCCCGC +
Preference number: 2 (lower is better)
Translates to: GHGASTMWRPSLLRDSLPGSRSL*SSRSSR
Trigger: GCGGGAACTACGGGAAGAGCACAGGGACCTGCTCCC...AGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR CCA 90 bp ATGCCCTGGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCTGGAGTTGTCAGGGCTaGGTGTGTGGGCTCCTGGCC +
Preference number: 2 (lower is better)
Translates to: MPWPRGQHHVETLTAQRLWSCQG*VCGLLA
Trigger: GGCCAGGAGCCCACACACCCAGCCCTGACAACTCCA...GAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCCAGGGCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR TCA 90 bp GCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCCCTCCCCCTCGAGAAGGGAGCCTaGGAAGGTTGGAAACCCGGG +
Preference number: 2 (lower is better)
Translates to: ASTMWRPSLLRDSLPPLPLEKGA*EGWKPG
Trigger: CCCGGGTTTCCAACCTTCTCAGGCTCCCTTCTCGAG...GGGGAGGGGAGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR CCA 90 bp GGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTGGGTGTGTGGGCTCCTaGCCACAAAGGGACTGGATA +
Preference number: 2 (lower is better)
Translates to: GHGASTMWRPSLLRDSLPGCVGS*PQRDWI
Trigger: TATCCAGTCCCTTTGTGGCCAGGAGCCCACACACCC...AGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR CCA 90 bp GGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCCCTCCCCTCAAACCACCAGTCTaGCCATCTCAGGAGCCTGCC +
Preference number: 2 (lower is better)
Translates to: GQHHVETLTAQRLTPSPPLKPPV*PSQEPA
Trigger: GGCAGGCTCCTGAGATGGCCAGACTGGTGGTTTGAG...GGGAGGGGAGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR CCA 90 bp ATGCCCTGGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCCCCGTTTTGGGGACCTaGCCCACTGGAAGCCTCAAA +
Preference number: 2 (lower is better)
Translates to: MPWPRGQHHVETLTAQRLPVLGT*PTGSLK
Trigger: TTTGAGGCTTCCAGTGGGCCAGGTCCCCAAAACGGG...GAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCCAGGGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR TCA 90 bp GCGGGAGTGGAGCAAAAGTCTGTGAGGGAACCAGGGTGGAGTTGTCAGGGCTGGCTCGAGAAGGGAGCCTaGGAAGGTTGGAAACCCGGG +
Preference number: 2 (lower is better)
Translates to: AGVEQKSVREPGWSCQGWLEKGA*EGWKPG
Trigger: CCCGGGTTTCCAACCTTCTCAGGCTCCCTTCTCGAG...CCAGCCCTGACAACTCCACCCTGGTTCCCTCACAGACTTTTGCTCCACTCCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR GCA 90 bp CCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCCCTCCCCCGCCATCTCAGGAGCCTaGCTCAGCTGTAGGGTGAAA +
Preference number: 2 (lower is better)
Translates to: PAPCGDPHCSETHSLPSPAISGA*LSCRVK
Trigger: TTTCACCCTACAGCTGAGGCAGGCTCCTGAGATGGC...GGGGGAGGGGAGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR CCA 90 bp CCTGGCCCACTGGAAGCCTCAAACCACCAGTCTGGCCATCTCAGGAGCCTGCCTTGTAGGGTGAAAGGGTaGGAGCAGGTCCCTGTGCTC +
Preference number: 2 (lower is better)
Translates to: PGPLEASNHQSGHLRSLPCRVKG*EQVPVL
Trigger: GAGCACAGGGACCTGCTCCCACCCTTTCACCCTACA...AGGCAGGCTCCTGAGATGGCCAGACTGGTGGTTTGAGGCTTCCAGTGGGCCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR GCA 90 bp CTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGTCGGGGAGAGGGGGAGCAGGTCCCTGTaGTCTTCCCGTAGTTCCCGC +
Preference number: 2 (lower is better)
Translates to: LSGYKELGAHSIVRVGERGSRSL*SSRSSR
Trigger: GCGGGAACTACGGGAAGAGCACAGGGACCTGCTCCC...CCTCTCCCCGACACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR CCA 90 bp GGACCAGGGCACTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGTCAGGGCTGGGTGTGTaGGCTCCTGGCCACAAAGGG +
Preference number: 2 (lower is better)
Translates to: GPGHSVVTRNLGLTALCVSGLGV*APGHKG
Trigger: CCCTTTGTGGCCAGGAGCCCACACACCCAGCCCTGA...CACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAGTGCCCTGGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR TCA 90 bp AGAGGGACCAGGGCACTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGGCCTCAGCTGTAGGGTaGAAGGGTGGGAGCAGGTCC +
Preference number: 2 (lower is better)
Translates to: RGTRALSGYKELGAHSIVASAVG*KGGSRS
Trigger: GGACCTGCTCCCACCCTTTCACCCTACAGCTGAGGC...CACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAGTGCCCTGGTCCCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR CAA 90 bp AAACGGAGGCTAGAGGGACCAGGGCACTCAGTGGTTACAAGGAACTaGGGGCTCACAGCATTGTGCGTGTCGGGGAGAGGGATAAGAGGG +
Preference number: 2 (lower is better)
Translates to: KRRLEGPGHSVVTRN*GLTALCVSGRGIRG
Trigger: CCCTCTTATCCCTCTCCCCGACACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAGTGCCCTGGTCCCTCTAGCCTCCGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR GCA 90 bp CCAATACCCAAGACCAGCTGTCACCCAGGTGGTCGACGTCCTGAGACCTTCTGGGCCATCTCAGGAGCCTaGCTCAGCTGTAGGGTGAAA +
Preference number: 2 (lower is better)
Translates to: PIPKTSCHPGGRRPETFWAISGA*LSCRVK
Trigger: TTTCACCCTACAGCTGAGGCAGGCTCCTGAGATGGC...CCAGAAGGTCTCAGGACGTCGACCACCTGGGTGACAGCTGGTCTTGGGTATTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR GCA 90 bp GGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCCCTCCCCTCCTATTCAGAGTCTaGCTTTCTGGTGGCCTTACA +
Preference number: 2 (lower is better)
Translates to: GQHHVETLTAQRLTPSPPLLFRV*LSGGLT
Trigger: TGTAAGGCCACCAGAAAGGCAGACTCTGAATAGGAG...GGGAGGGGAGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR CCA 90 bp CTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGTCGGGGAGAGGGGGTGTGTGGGCTCCTaGCCACAAAGGGACTGGATA +
Preference number: 2 (lower is better)
Translates to: LSGYKELGAHSIVRVGERGCVGS*PQRDWI
Trigger: TATCCAGTCCCTTTGTGGCCAGGAGCCCACACACCC...CCTCTCCCCGACACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR CCA 90 bp AGAGGGACCAGGGCACTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGGTGAGGGAACCAGGGTaGAGTTGTCAGGGCTGGGTG +
Preference number: 2 (lower is better)
Translates to: RGTRALSGYKELGAHSIVVREPG*SCQGWV
Trigger: CACCCAGCCCTGACAACTCCACCCTGGTTCCCTCAC...CACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAGTGCCCTGGTCCCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR CCA 90 bp GTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGTCGGGGAGAGGGATATGGGAAGGAAGGGCCTaGAAAGAAGCCCCTGAAGGC +
Preference number: 2 (lower is better)
Translates to: VVTRNLGLTALCVSGRGIWEGRA*KEAPEG
Trigger: GCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCA...TATCCCTCTCCCCGACACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR GCA 90 bp CTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGTCGGGGAGAGGCCTCTATGGGAACTGTaGATAGTGACTGGGATGGGG +
Preference number: 2 (lower is better)
Translates to: LSGYKELGAHSIVRVGERPLWEL*IVTGMG
Trigger: CCCCATCCCAGTCACTATGCACAGTTCCCATAGAGG...CCTCTCCCCGACACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR CCA 90 bp GTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGTCGGGGAGAGGGATAACTGTGCATAGTGACTaGGATGGGGAGGAAATAGGA +
Preference number: 2 (lower is better)
Translates to: VVTRNLGLTALCVSGRGITVHSD*DGEEIG
Trigger: TCCTATTTCCTCCCCATCCCAGTCACTATGCACAGT...TATCCCTCTCCCCGACACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR CCA 90 bp GGTGGCCTTACATCAATCCTGGCACACGTGAAAGAACACTTAAAGATCTGCATGCCCGTTTTGGGGACCTaGCCCACTGGAAGCCTCAAA +
Preference number: 2 (lower is better)
Translates to: GGLTSILAHVKEHLKICMPVLGT*PTGSLK
Trigger: TTTGAGGCTTCCAGTGGGCCAGGTCCCCAAAACGGG...CATGCAGATCTTTAAGTGTTCTTTCACGTGTGCCAGGATTGATGTAAGGCCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR CCA 90 bp GAAAGGTTTTTATTACCAATGTATACTGTGACAGTTAGTAGCCAAAAACGGAGGATGCAACAGATGCCCTaGCCACGGGGCCAGCACCAT +
Preference number: 2 (lower is better)
Translates to: ERFLLPMYTVTVSSQKRRMQQMP*PRGQHH
Trigger: ATGGTGCTGGCCCCGTGGCCAGGGCATCTGTTGCAT...CCTCCGTTTTTGGCTACTAACTGTCACAGTATACATTGGTAATAAAAACCTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR CCA 90 bp GAAAGGTTTTTATTACCAATGTATACTGTGACAGTTAGTAGCCAAAAACGGAGGTGGGAAGGAAGGGCCTaGAAAGAAGCCCCTGAAGGC +
Preference number: 2 (lower is better)
Translates to: ERFLLPMYTVTVSSQKRRWEGRA*KEAPEG
Trigger: GCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCA...CCTCCGTTTTTGGCTACTAACTGTCACAGTATACATTGGTAATAAAAACCTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR GCA 90 bp GAAAGGTTTTTATTACCAATGTATACTGTGACAGTTAGTAGCCAAAAACGGAGGGAACACTTAAAGATCTaGATGCAGTCTTTCCCCGTT +
Preference number: 2 (lower is better)
Translates to: ERFLLPMYTVTVSSQKRREHLKI*MQSFPV
Trigger: AACGGGGAAAGACTGCATGCAGATCTTTAAGTGTTC...CCTCCGTTTTTGGCTACTAACTGTCACAGTATACATTGGTAATAAAAACCTTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR CAA 90 bp CCAATACCCAAGACCAGCTGTCACCCAGGTGGTCGACGTCCTGAGACCTTCTGGGGAACCAGGGTGGAGTaGTCAGGGCTGGGTGTGTGG +
Preference number: 3 (lower is better)
Translates to: PIPKTSCHPGGRRPETFWGTRVE*SGLGVW
Trigger: CCACACACCCAGCCCTGACAACTCCACCCTGGTTCC...CCAGAAGGTCTCAGGACGTCGACCACCTGGGTGACAGCTGGTCTTGGGTATTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR CCA 72 bp TGGGGTAGGACTACCAACAGCATGCAACAGATGCCCTaGCCACGGGGCCAGCACCATGTGGAGACCCTCACT +
Preference number: 3 (lower is better)
Translates to: WGRTTNSMQQMP*PRGQHHVETLT
Trigger: AGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCCAGGGCATCTGTTGCATGCTGTTGGTAGTCCTACCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR CAA 90 bp GTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCCTCGGGGAGCCTGAGAAGGTaGGAAACCCGGGCCTACAAA +
Preference number: 3 (lower is better)
Translates to: VFGKEGPGKKPLKAAHSSGSLRR*ETRAYK
Trigger: TTTGTAGGCCCGGGTTTCCAACCTTCTCAGGCTCCC...CGAGGAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR TCA 72 bp AAGAAGCCCCTGAAGGCGGCTCACTCCTCGGAGGCATaGCGCACTTGGGGGTGGAACATAGCTTTCAAGGGC +
Preference number: 3 (lower is better)
Translates to: KKPLKAAHSSEA*RTWGWNIAFKG
Trigger: GCCCTTGAAAGCTATGTTCCACCCCCAAGTGCGTCATGCCTCCGAGGAGTGAGCCGCCTTCAGGGGCTTCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR TCA 72 bp CAGTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTaGAGGCGGCTCACTCCTCGGAGGCATGACGCACTT +
Preference number: 3 (lower is better)
Translates to: QCLGRKGLERSP*RRLTPRRHDAL
Trigger: AAGTGCGTCATGCCTCCGAGGAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR GCA 72 bp AAGCCTCAAACCACCAGTCTGGCCATCTCAGGAGCCTaGCTCAGCTGTAGGGTGAAAGGGTGGGAGCAGGTC +
Preference number: 3 (lower is better)
Translates to: KPQTTSLAISGA*LSCRVKGWEQV
Trigger: GACCTGCTCCCACCCTTTCACCCTACAGCTGAGGCAGGCTCCTGAGATGGCCAGACTGGTGGTTTGAGGCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR CCA 72 bp CAGGGTGGAGTTGTCAGGGCTGGGTGTGTGGGCTCCTaGCCACAAAGGGACTGGATATGGGGTTTTCCGTCA +
Preference number: 3 (lower is better)
Translates to: QGGVVRAGCVGS*PQRDWIWGFPS
Trigger: TGACGGAAAACCCCATATCCAGTCCCTTTGTGGCCAGGAGCCCACACACCCAGCCCTGACAACTCCACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR CCA 72 bp GGGTGTGTGGGCTCCTGGCCACAAAGGGACTGGATATaGGGTTTTCCGTCAGTGTTTGGGAAGGAAGGGCCT +
Preference number: 3 (lower is better)
Translates to: GCVGSWPQRDWI*GFPSVFGKEGP
Trigger: AGGCCCTTCCTTCCCAAACACTGACGGAAAACCCCATATCCAGTCCCTTTGTGGCCAGGAGCCCACACACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR CAA 90 bp GTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGTCGGGGAGAGGGATAGGGAGCCTGAGAAGGTaGGAAACCCGGGCCTACAAA +
Preference number: 3 (lower is better)
Translates to: VVTRNLGLTALCVSGRGIGSLRR*ETRAYK
Trigger: TTTGTAGGCCCGGGTTTCCAACCTTCTCAGGCTCCC...TATCCCTCTCCCCGACACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR CCA 72 bp AGGGCTGGGTGTGTGGGCTCCTGGCCACAAAGGGACTaGATATGGGGTTTTCCGTCAGTGTTTGGGAAGGAA +
Preference number: 3 (lower is better)
Translates to: RAGCVGSWPQRD*IWGFPSVFGKE
Trigger: TTCCTTCCCAAACACTGACGGAAAACCCCATATCCAGTCCCTTTGTGGCCAGGAGCCCACACACCCAGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR-3UTR CAA 90 bp GGACCAGGGCACTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGGTTTTCCGTCAGTGTTaGGGAAGGAAGGGCCTGGAA +
Preference number: 3 (lower is better)
Translates to: GPGHSVVTRNLGLTALCVVFRQC*GRKGLE
Trigger: TTCCAGGCCCTTCCTTCCCAAACACTGACGGAAAAC...CACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAGTGCCCTGGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR TCA 72 bp CATAGCTTTCAAGGGCCAGACCTCGAGAAGGGAGCCTaGGAAGGTTGGAAACCCGGGCCTACAAAACAGGGA +
Preference number: 3 (lower is better)
Translates to: HSFQGPDLEKGA*EGWKPGPTKQG
Trigger: TCCCTGTTTTGTAGGCCCGGGTTTCCAACCTTCTCAGGCTCCCTTCTCGAGGTCTGGCCCTTGAAAGCTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR CCA 72 bp GTTGAGCCCCAGGGCATTCCTAGCCTTTGGCCTCTATaGGAACTGTGCATAGTGACTGGGATGGGGAGGAAA +
Preference number: 3 (lower is better)
Translates to: VEPQGIPSLWPL*ELCIVTGMGRK
Trigger: TTTCCTCCCCATCCCAGTCACTATGCACAGTTCCCATAGAGGCCAAAGGCTAGGAATGCCCTGGGGCTCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCGCAGCCTCCGCGCTaGGGCTCTTCTGAGCCGCCG +
Preference number: 4 (lower is better)
Translates to: GHGASTMWRPSLLRDSLPPQPPR*GSSEPP
Trigger: CGGCGGCTCAGAAGAGCCCCAGCGCGGAGGCTGCGG...AGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCACCCGCGCCGTCCTaGGGAGACATGGGGCTCACC +
Preference number: 4 (lower is better)
Translates to: GHGASTMWRPSLLRDSLPPPAPS*GDMGLT
Trigger: GGTGAGCCCCATGTCTCCGCAGGACGGCGCGGGTGG...AGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GACCTGGCCCACTGGAAGCCTCAAACCACCAGTCTGGCCATCTCAGGAGCCTGCGGCCGGCGCACACTCTaGAGCAGCGCGCGGAAGAGG +
Preference number: 4 (lower is better)
Translates to: DLAHWKPQTTSLAISGACGRRTL*SSARKR
Trigger: CCTCTTCCGCGCGCTGCTGCAGAGTGTGCGCCGGCC...GCAGGCTCCTGAGATGGCCAGACTGGTGGTTTGAGGCTTCCAGTGGGCCAGGTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp CAGGGCTGGGTGTGTGGGCTCCTGGCCACAAAGGGACTGGATATGGGGTTTTCCCCGCAGCCTCCGCGCTaGGGCTCTTCTGAGCCGCCG +
Preference number: 4 (lower is better)
Translates to: QGWVCGLLATKGLDMGFSPQPPR*GSSEPP
Trigger: CGGCGGCTCAGAAGAGCCCCAGCGCGGAGGCTGCGG...GGAAAACCCCATATCCAGTCCCTTTGTGGCCAGGAGCCCACACACCCAGCCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GTCAGTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCACCGAGACGCAGGCCTaGGCGCCTGCCTGGGTGCCC +
Preference number: 4 (lower is better)
Translates to: VSVWEGRAWKEAPEGGSLTETQA*APAWVP
Trigger: GGGCACCCAGGCAGGCGCGCAGGCCTGCGTCTCGGT...GAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACACTGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GCGGGAGTGGAGCAAAAGTCTGTGAGGGAACCAGGGTGGAGTTGTCAGGGCTGGGGCCGGCGCACACTCTaGAGCAGCGCGCGGAAGAGG +
Preference number: 4 (lower is better)
Translates to: AGVEQKSVREPGWSCQGWGRRTL*SSARKR
Trigger: CCTCTTCCGCGCGCTGCTGCAGAGTGTGCGCCGGCC...CCAGCCCTGACAACTCCACCCTGGTTCCCTCACAGACTTTTGCTCCACTCCCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp CCAATACCCAAGACCAGCTGTCACCCAGGTGGTCGACGTCCTGAGACCTTCTGGGTTGTCGCGAGTCCGTaGCCCTGGAGGGGGCGCCGC +
Preference number: 4 (lower is better)
Translates to: PIPKTSCHPGGRRPETFWVVASP*PWRGRR
Trigger: GCGGCGCCCCCTCCAGGGCCACGGACTCGCGACAAC...CCAGAAGGTCTCAGGACGTCGACCACCTGGGTGACAGCTGGTCTTGGGTATTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCCCTCCCCGTCCTGCGGAGACATaGGGCTCACCGCCACCGAGA +
Preference number: 4 (lower is better)
Translates to: GQHHVETLTAQRLTPSPPRPAET*GSPPPR
Trigger: TCTCGGTGGCGGTGAGCCCCATGTCTCCGCAGGACG...GGGAGGGGAGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GGACCAGGGCACTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGACCGAGACGCAGGCCTaGGCGCCTGCCTGGGTGCCC +
Preference number: 4 (lower is better)
Translates to: GPGHSVVTRNLGLTALCVTETQA*APAWVP
Trigger: GGGCACCCAGGCAGGCGCGCAGGCCTGCGTCTCGGT...CACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAGTGCCCTGGTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GGACCAGGGCACTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGCGCCAACACCGAGCCTaGCCGCACCCGCACCTCGGG +
Preference number: 4 (lower is better)
Translates to: GPGHSVVTRNLGLTALCVRQHRA*PHPHLG
Trigger: CCCGAGGTGCGGGTGCGGCCAGGCTCGGTGTTGGCG...CACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAGTGCCCTGGTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp CCTGGCCCACTGGAAGCCTCAAACCACCAGTCTGGCCATCTCAGGAGCCTGCCTTCTCTGGGGCTGGGCTaGGCTGTAGGGTGTGCCATC +
Preference number: 4 (lower is better)
Translates to: PGPLEASNHQSGHLRSLPSLGLG*AVGCAI
Trigger: GATGGCACACCCTACAGCTCAGCCCAGCCCCAGAGA...AGGCAGGCTCCTGAGATGGCCAGACTGGTGGTTTGAGGCTTCCAGTGGGCCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp CCTGGCCCACTGGAAGCCTCAAACCACCAGTCTGGCCATCTCAGGAGCCTGCCTACGACGGCGCCTTGGTaGAGTTGTCGCGAGTCCGTG +
Preference number: 4 (lower is better)
Translates to: PGPLEASNHQSGHLRSLPTTAPW*SCRESV
Trigger: CACGGACTCGCGACAACTTCACCAAGGCGCCGTCGT...AGGCAGGCTCCTGAGATGGCCAGACTGGTGGTTTGAGGCTTCCAGTGGGCCAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp ATGCCCTGGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCGGTGTGCCATCTGATTaGCTGAGAGAGGACGTGGCC +
Preference number: 4 (lower is better)
Translates to: MPWPRGQHHVETLTAQRLGVPSD*LREDVA
Trigger: GGCCACGTCCTCTCTCAGGCAATCAGATGGCACACC...GAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCCAGGGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GGAGCCTGCCTCAGCTGTAGGGTGAAAGGGTGGGAGCAGGTCCCTGTGCTCTTCTTGGGGGTGCAGGGATaGCCTTTGGAGAGGAGCAGC +
Preference number: 4 (lower is better)
Translates to: GACLSCRVKGWEQVPVLFLGVQG*PLERSS
Trigger: GCTGCTCCTCTCCAAAGGCCATCCCTGCACCCCCAA...GAAGAGCACAGGGACCTGCTCCCACCCTTTCACCCTACAGCTGAGGCAGGCTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp TCACTCCTCGGAGGCATGACGCACTTGGGGGTGGAACATAGCTTTCAAGGGCCAGAGTCATGGGCCCCGTaGCCACCGAGCGTGTCTCGG +
Preference number: 4 (lower is better)
Translates to: SLLGGMTHLGVEHSFQGPESWAP*PPSVSR
Trigger: CCGAGACACGCTCGGTGGCCACGGGGCCCATGACTC...TGGCCCTTGAAAGCTATGTTCCACCCCCAAGTGCGTCATGCCTCCGAGGAGTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCCCTCCCCGCACCTCCACCTCCATaGAAGCACCGTACACTTCCC +
Preference number: 4 (lower is better)
Translates to: ASTMWRPSLLRDSLPPLPAPPPP*KHRTLP
Trigger: GGGAAGTGTACGGTGCTTCCATGGAGGTGGAGGTGC...GGGGAGGGGAGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp CCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCCCTCCCCCCGCTCCAAATGCTTCTaGATGGCCATGCCCAGCACC +
Preference number: 4 (lower is better)
Translates to: PAPCGDPHCSETHSLPSPRSKCF*MAMPST
Trigger: GGTGCTGGGCATGGCCATCCAGAAGCATTTGGAGCG...GGGGGAGGGGAGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGG
62% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GGAGCCTGCCTCAGCTGTAGGGTGAAAGGGTGGGAGCAGGTCCCTGTGCTCTTCCCGTGCTCCTCGATCTaGCGCTCCAAATGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: GACLSCRVKGWEQVPVLFPCSSI*RSKCFW
Trigger: CCAGAAGCATTTGGAGCGTCAGATCGAGGAGCACGG...GAAGAGCACAGGGACCTGCTCCCACCCTTTCACCCTACAGCTGAGGCAGGCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GTCAGTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCGGCGTGCCTTGGGGGTaGAGGGATGGCCTTTGGAGA +
Preference number: 4 (lower is better)
Translates to: VSVWEGRAWKEAPEGGSLGVPWG*RDGLWR
Trigger: TCTCCAAAGGCCATCCCTGCACCCCCAAGGCACGCC...GAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACACTGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTGAAGTGGAGTCTGCCTaGTTCAGGGAGTTGCCATCC +
Preference number: 4 (lower is better)
Translates to: GHGASTMWRPSLLRDSLPEVESA*FRELPS
Trigger: GGATGGCAACTCCCTGAAGCAGGCAGACTCCACTTC...AGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCCTCGCCGCCCCTGAAGCTGTaGAGTCCACTCTTCCTACCG +
Preference number: 4 (lower is better)
Translates to: VFGKEGPGKKPLKAAHSSPPLKL*SPLFLP
Trigger: CGGTAGGAAGAGTGGACTGCACAGCTTCAGGGGCGG...CGAGGAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCTGCAGCTCTGGGATaGCTTCTGCTCTTTCTGAGG +
Preference number: 4 (lower is better)
Translates to: GHGASTMWRPSLLRDSLPPAALG*LLLFLR
Trigger: CCTCAGAAAGAGCAGAAGGCATCCCAGAGCTGCAGG...AGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp CCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCCCTCCCCCCCTGCAGCTCTGGGATaGCTTCTGCTCTTTCTGAGG +
Preference number: 4 (lower is better)
Translates to: PAPCGDPHCSETHSLPSPPAALG*LLLFLR
Trigger: CCTCAGAAAGAGCAGAAGGCATCCCAGAGCTGCAGG...GGGGGAGGGGAGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGG
61% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp TCAGTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCCGGTCTTTCTGGCTGGTaGTGGCAGAGGGCTCCCGCT +
Preference number: 4 (lower is better)
Translates to: SVFGKEGPGKKPLKAAHSGLSGW*WQRAPA
Trigger: AGCGGGAGCCCTCTGCCAGCACCAGCCAGAAAGACC...GGAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACACTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GTCAGTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCGGTCTTTCTGGCTGGTaGTGGCAGAGGGCTCCCGCT +
Preference number: 4 (lower is better)
Translates to: VSVWEGRAWKEAPEGGSLGLSGW*WQRAPA
Trigger: AGCGGGAGCCCTCTGCCAGCACCAGCCAGAAAGACC...GAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACACTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp ATGCCCTGGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACACTTCCCACGTCATaGCCTTCTCGTCCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: MPWPRGQHHVETLTAQRLTLPTS*PSRPSS
Trigger: TGAGCTGGGACGAGAAGGGCATGACGTGGGAAGTGT...GAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCCAGGGCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp CCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCCCTCCCCCACACTTCCCACGTCATaGCCTTCTCGTCCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: PAPCGDPHCSETHSLPSPTLPTS*PSRPSS
Trigger: TGAGCTGGGACGAGAAGGGCATGACGTGGGAAGTGT...GGGGGAGGGGAGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCCTCGCAGCCCCACTGGAACTaGTGTGTCTGGGGTCCATGC +
Preference number: 4 (lower is better)
Translates to: VFGKEGPGKKPLKAAHSSQPHWN*CVWGPC
Trigger: GCATGGACCCCAGACACACCAGTTCCAGTGGGGCTG...CGAGGAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GACCTGGCCCACTGGAAGCCTCAAACCACCAGTCTGGCCATCTCAGGAGCCTGCCTGAGGCTGTGGGAGTaGCTTCTGCTGAGGACATGG +
Preference number: 4 (lower is better)
Translates to: DLAHWKPQTTSLAISGACLRLWE*LLLRTW
Trigger: CCATGTCCTCAGCAGAAGCCACTCCCACAGCCTCAG...GCAGGCTCCTGAGATGGCCAGACTGGTGGTTTGAGGCTTCCAGTGGGCCAGGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GTAGTTCCCGCGGGAGTGGAGCAAAAGTCTGTGAGGGAACCAGGGTGGAGTTGTCGTCCTGCGGAGACATaGGGCTCACCGCCACCGAGA +
Preference number: 4 (lower is better)
Translates to: VVPAGVEQKSVREPGWSCRPAET*GSPPPR
Trigger: TCTCGGTGGCGGTGAGCCCCATGTCTCCGCAGGACG...ACAACTCCACCCTGGTTCCCTCACAGACTTTTGCTCCACTCCCGCGGGAACTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGTCGGGGAGAGGGATAGAGTCATGGGCCCCGTaGCCACCGAGCGTGTCTCGG +
Preference number: 4 (lower is better)
Translates to: VVTRNLGLTALCVSGRGIESWAP*PPSVSR
Trigger: CCGAGACACGCTCGGTGGCCACGGGGCCCATGACTC...TATCCCTCTCCCCGACACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR CAA 72 bp CCTGAAGGCGGCTCACTCCTCGGAGGCATGACGCACTaGGGGGTGGAACATAGCTTTCAAGGGCCAGACCTC +
Preference number: 4 (lower is better)
Translates to: PEGGSLLGGMTH*GVEHSFQGPDL
Trigger: GAGGTCTGGCCCTTGAAAGCTATGTTCCACCCCCAAGTGCGTCATGCCTCCGAGGAGTGAGCCGCCTTCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCCCTCCCAGGATTTCTGATCTCTaGGGCTGTGGGAGTGGCTTC +
Preference number: 4 (lower is better)
Translates to: GQHHVETLTAQRLTPSPPRISDL*GCGSGF
Trigger: GAAGCCACTCCCACAGCCTCAGAGATCAGAAATCCT...GGGAGGGGAGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GCGGGAGTGGAGCAAAAGTCTGTGAGGGAACCAGGGTGGAGTTGTCAGGGCTGGAGGGTCCGCTCTGCCTaGAGGTCCTGTACTGTTGGA +
Preference number: 4 (lower is better)
Translates to: AGVEQKSVREPGWSCQGWRVRSA*RSCTVG
Trigger: TCCAACAGTACAGGACCTTCAGGCAGAGCGGACCCT...CCAGCCCTGACAACTCCACCCTGGTTCCCTCACAGACTTTTGCTCCACTCCCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTGAGGTCTGTCTTTCCTaGAGACTCGGGATTCCCCTT +
Preference number: 4 (lower is better)
Translates to: GHGASTMWRPSLLRDSLPEVCLS*RLGIPL
Trigger: AAGGGGAATCCCGAGTCTTCAGGAAAGACAGACCTC...AGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTTGCCATCTGATTGCCTaGGAGAGGACGTGGCCTTAT +
Preference number: 4 (lower is better)
Translates to: GHGASTMWRPSLLRDSLPCHLIA*ERTWPY
Trigger: ATAAGGCCACGTCCTCTCTCAGGCAATCAGATGGCA...AGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp TCACTCCTCGGAGGCATGACGCACTTGGGGGTGGAACATAGCTTTCAAGGGCCAACGACGGCGCCTTGGTaGAGTTGTCGCGAGTCCGTG +
Preference number: 4 (lower is better)
Translates to: SLLGGMTHLGVEHSFQGPTTAPW*SCRESV
Trigger: CACGGACTCGCGACAACTTCACCAAGGCGCCGTCGT...TGGCCCTTGAAAGCTATGTTCCACCCCCAAGTGCGTCATGCCTCCGAGGAGTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GCGGGAGTGGAGCAAAAGTCTGTGAGGGAACCAGGGTGGAGTTGTCAGGGCTGGCTGGCAGGGATCCGATaGTCCTGGTATCTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: AGVEQKSVREPGWSCQGWLAGIR*SWYLSG
Trigger: CCCAGAGAGATACCAGGAGCATCGGATCCCTGCCAG...CCAGCCCTGACAACTCCACCCTGGTTCCCTCACAGACTTTTGCTCCACTCCCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp CCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCCCTCCCCCCTTCTGCTGAGGACATaGGCTCTGGCTTCCCAAACA +
Preference number: 4 (lower is better)
Translates to: PAPCGDPHCSETHSLPSPLLLRT*ALASQT
Trigger: TGTTTGGGAAGCCAGAGCCCATGTCCTCAGCAGAAG...GGGGGAGGGGAGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGG
60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GGAGCCTGCCTCAGCTGTAGGGTGAAAGGGTGGGAGCAGGTCCCTGTGCTCTTCCCTTTCGTGTGGAAGTaGAGTCTGCCTGCTTCAGGG +
Preference number: 4 (lower is better)
Translates to: GACLSCRVKGWEQVPVLFPFVWK*SLPASG
Trigger: CCCTGAAGCAGGCAGACTCCACTTCCACACGAAAGG...GAAGAGCACAGGGACCTGCTCCCACCCTTTCACCCTACAGCTGAGGCAGGCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp AGAGGGACCAGGGCACTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGGCTCAGTACTCCCTGTaGCCCCGGTGTCCACCCGTG +
Preference number: 4 (lower is better)
Translates to: RGTRALSGYKELGAHSIVAQYSL*PRCPPV
Trigger: CACGGGTGGACACCGGGGCCACAGGGAGTACTGAGC...CACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAGTGCCCTGGTCCCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GACCTGGCCCACTGGAAGCCTCAAACCACCAGTCTGGCCATCTCAGGAGCCTGCCCTGAGGGACAGTCTTaGCGGAAGTCTGAGACTCTG +
Preference number: 4 (lower is better)
Translates to: DLAHWKPQTTSLAISGACPEGQS*RKSETL
Trigger: CAGAGTCTCAGACTTCCGCCAAGACTGTCCCTCAGG...GCAGGCTCCTGAGATGGCCAGACTGGTGGTTTGAGGCTTCCAGTGGGCCAGGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
3UTR CAA 72 bp CTAGAGGGACCAGGGCACTCAGTGGTTACAAGGAACTaGGGGCTCACAGCATTGTGCGTGTCGGGGAGAGGG +
Preference number: 4 (lower is better)
Translates to: LEGPGHSVVTRN*GLTALCVSGRG
Trigger: CCCTCTCCCCGACACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAGTGCCCTGGTCCCTCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp CCTGGCCCACTGGAAGCCTCAAACCACCAGTCTGGCCATCTCAGGAGCCTGCCTAGACCCACCTTCTCCTaGGGAGACAGCCTCTTTCTT +
Preference number: 4 (lower is better)
Translates to: PGPLEASNHQSGHLRSLPRPTFS*GDSLFL
Trigger: AAGAAAGAGGCTGTCTCCTCAGGAGAAGGTGGGTCT...AGGCAGGCTCCTGAGATGGCCAGACTGGTGGTTTGAGGCTTCCAGTGGGCCAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCCCTCCCCGCCTTCTGCTCTTTCTaGGGTCATGAGATCCACCTT +
Preference number: 4 (lower is better)
Translates to: ASTMWRPSLLRDSLPPLPAFCSF*GHEIHL
Trigger: AAGGTGGATCTCATGACCTCAGAAAGAGCAGAAGGC...GGGGAGGGGAGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTGCCTTCTGCTCTTTCTaGGGTCATGAGATCCACCTT +
Preference number: 4 (lower is better)
Translates to: GHGASTMWRPSLLRDSLPAFCSF*GHEIHL
Trigger: AAGGTGGATCTCATGACCTCAGAAAGAGCAGAAGGC...AGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCCCTCCCCTCTGGGTTATCACTTTaGCCCCAGATTTGGGCTCAG +
Preference number: 4 (lower is better)
Translates to: ASTMWRPSLLRDSLPPLPSGLSL*PQIWAQ
Trigger: CTGAGCCCAAATCTGGGGTCAAAGTGATAACCCAGA...GGGGAGGGGAGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GGAGCCTGCCTCAGCTGTAGGGTGAAAGGGTGGGAGCAGGTCCCTGTGCTCTTCTGCCATCTGATTGCCTaGGAGAGGACGTGGCCTTAT +
Preference number: 4 (lower is better)
Translates to: GACLSCRVKGWEQVPVLFCHLIA*ERTWPY
Trigger: ATAAGGCCACGTCCTCTCTCAGGCAATCAGATGGCA...GAAGAGCACAGGGACCTGCTCCCACCCTTTCACCCTACAGCTGAGGCAGGCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GGACCAGGGCACTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGCAAGGACACGCGTTCTaGCTGCCCAGAGGACAAGCG +
Preference number: 4 (lower is better)
Translates to: GPGHSVVTRNLGLTALCVQGHAF*LPRGQA
Trigger: CGCTTGTCCTCTGGGCAGGCAGAACGCGTGTCCTTG...CACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAGTGCCCTGGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCCTCGAGTCACCTCAGCTTTTaGAGCAGACAGGGACCCCCA +
Preference number: 4 (lower is better)
Translates to: VFGKEGPGKKPLKAAHSSSHLSF*SRQGPP
Trigger: TGGGGGTCCCTGTCTGCTGCAAAAGCTGAGGTGACT...CGAGGAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp ATGCCCTGGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCTGTGGCTGCTCCTTTTaGAAAGACGGAGTTTCCACC +
Preference number: 4 (lower is better)
Translates to: MPWPRGQHHVETLTAQRLCGCSF*KDGVST
Trigger: GGTGGAAACTCCGTCTTTGCAAAAGGAGCAGCCACA...GAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCCAGGGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp CCTGGCCCACTGGAAGCCTCAAACCACCAGTCTGGCCATCTCAGGAGCCTGCCTTCTAGGAGATGGAGATaGAGAGTCAGCCTTCCCCAG +
Preference number: 4 (lower is better)
Translates to: PGPLEASNHQSGHLRSLPSRRWR*RVSLPQ
Trigger: CTGGGGAAGGCTGACTCTGCATCTCCATCTCCTAGA...AGGCAGGCTCCTGAGATGGCCAGACTGGTGGTTTGAGGCTTCCAGTGGGCCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GGAGCCTGCCTCAGCTGTAGGGTGAAAGGGTGGGAGCAGGTCCCTGTGCTCTTCCTTCTGCTGAGGACATaGGCTCTGGCTTCCCAAACA +
Preference number: 4 (lower is better)
Translates to: GACLSCRVKGWEQVPVLFLLLRT*ALASQT
Trigger: TGTTTGGGAAGCCAGAGCCCATGTCCTCAGCAGAAG...GAAGAGCACAGGGACCTGCTCCCACCCTTTCACCCTACAGCTGAGGCAGGCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp ATGCCCTGGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCTACCTTCTGGCTGTCTaGCAGACACTGTTTCTGCCA +
Preference number: 4 (lower is better)
Translates to: MPWPRGQHHVETLTAQRLYLLAV*QTLFLP
Trigger: TGGCAGAAACAGTGTCTGCCAGACAGCCAGAAGGTA...GAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCCAGGGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GACCTGGCCCACTGGAAGCCTCAAACCACCAGTCTGGCCATCTCAGGAGCCTGCGGGGGTCGACTTTTCTaGAGGGATCTGTCTTCTCAG +
Preference number: 4 (lower is better)
Translates to: DLAHWKPQTTSLAISGACGGRLF*RDLSSQ
Trigger: CTGAGAAGACAGATCCCTCCAGAAAAGTCGACCCCC...GCAGGCTCCTGAGATGGCCAGACTGGTGGTTTGAGGCTTCCAGTGGGCCAGGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp TTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCCTCGGAGCCTGAGGGACAGTCTTaGCGGAAGTCTGAGACTCTG +
Preference number: 4 (lower is better)
Translates to: FGKEGPGKKPLKAAHSSEPEGQS*RKSETL
Trigger: CAGAGTCTCAGACTTCCGCCAAGACTGTCCCTCAGG...CTCCGAGGAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp TCAGTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCCGCACCTCCACCTCCATaGAAGCACCGTACACTTCCC +
Preference number: 4 (lower is better)
Translates to: SVFGKEGPGKKPLKAAHSAPPPP*KHRTLP
Trigger: GGGAAGTGTACGGTGCTTCCATGGAGGTGGAGGTGC...GGAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACACTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GACCTGGCCCACTGGAAGCCTCAAACCACCAGTCTGGCCATCTCAGGAGCCTGCAGAACACAGGATTTCTaGTCTCTGAGGCTGTGGGAG +
Preference number: 4 (lower is better)
Translates to: DLAHWKPQTTSLAISGACRTQDF*SLRLWE
Trigger: CTCCCACAGCCTCAGAGATCAGAAATCCTGTGTTCT...GCAGGCTCCTGAGATGGCCAGACTGGTGGTTTGAGGCTTCCAGTGGGCCAGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GGAGCCTGCCTCAGCTGTAGGGTGAAAGGGTGGGAGCAGGTCCCTGTGCTCTTCAGAACACAGGATTTCTaGTCTCTGAGGCTGTGGGAG +
Preference number: 4 (lower is better)
Translates to: GACLSCRVKGWEQVPVLFRTQDF*SLRLWE
Trigger: CTCCCACAGCCTCAGAGATCAGAAATCCTGTGTTCT...GAAGAGCACAGGGACCTGCTCCCACCCTTTCACCCTACAGCTGAGGCAGGCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp TCACTCCTCGGAGGCATGACGCACTTGGGGGTGGAACATAGCTTTCAAGGGCCACCGTGCTCCTCGATCTaGCGCTCCAAATGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: SLLGGMTHLGVEHSFQGPPCSSI*RSKCFW
Trigger: CCAGAAGCATTTGGAGCGTCAGATCGAGGAGCACGG...TGGCCCTTGAAAGCTATGTTCCACCCCCAAGTGCGTCATGCCTCCGAGGAGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp CCAATACCCAAGACCAGCTGTCACCCAGGTGGTCGACGTCCTGAGACCTTCTGGTGTGTCTGGGGTCCATaGCTAAACTCTGGTCCAGGG +
Preference number: 4 (lower is better)
Translates to: PIPKTSCHPGGRRPETFWCVWGP*LNSGPG
Trigger: CCCTGGACCAGAGTTTAGGCATGGACCCCAGACACA...CCAGAAGGTCTCAGGACGTCGACCACCTGGGTGACAGCTGGTCTTGGGTATTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp ATAGCTTTCAAGGGCCAGACCTCGAGAAGGGAGCCTGAGAAGGTTGGAAACCCGCCGCCCCTGAAGCTGTaGAGTCCACTCTTCCTACCG +
Preference number: 4 (lower is better)
Translates to: IAFKGQTSRREPEKVGNPPPLKL*SPLFLP
Trigger: CGGTAGGAAGAGTGGACTGCACAGCTTCAGGGGCGG...CGGGTTTCCAACCTTCTCAGGCTCCCTTCTCGAGGTCTGGCCCTTGAAAGCTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp AGAGGGACCAGGGCACTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCAAGGACACGCGTTCTaGCTGCCCAGAGGACAAGCG +
Preference number: 4 (lower is better)
Translates to: RGTRALSGYKELGAHSIVQGHAF*LPRGQA
Trigger: CGCTTGTCCTCTGGGCAGGCAGAACGCGTGTCCTTG...CACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAGTGCCCTGGTCCCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCCTCGCCTTTCTCTGAAGCCTaGAGCTCTGGGATGCCTTCT +
Preference number: 4 (lower is better)
Translates to: VFGKEGPGKKPLKAAHSSPFSEA*SSGMPS
Trigger: AGAAGGCATCCCAGAGCTGCAGGCTTCAGAGAAAGG...CGAGGAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GGAGCCTGCCTCAGCTGTAGGGTGAAAGGGTGGGAGCAGGTCCCTGTGCTCTTCTGTGGCTGCTCCTTTTaGAAAGACGGAGTTTCCACC +
Preference number: 4 (lower is better)
Translates to: GACLSCRVKGWEQVPVLFCGCSF*KDGVST
Trigger: GGTGGAAACTCCGTCTTTGCAAAAGGAGCAGCCACA...GAAGAGCACAGGGACCTGCTCCCACCCTTTCACCCTACAGCTGAGGCAGGCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCCTCGTCTAGGAGATGGAGATaGAGAGTCAGCCTTCCCCAG +
Preference number: 4 (lower is better)
Translates to: VFGKEGPGKKPLKAAHSSSRRWR*RVSLPQ
Trigger: CTGGGGAAGGCTGACTCTGCATCTCCATCTCCTAGA...CGAGGAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GGACCAGGGCACTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGCTGGCAGGGATCCGATaGTCCTGGTATCTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: GPGHSVVTRNLGLTALCVLAGIR*SWYLSG
Trigger: CCCAGAGAGATACCAGGAGCATCGGATCCCTGCCAG...CACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAGTGCCCTGGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp CTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGTCGGGGAGAGGTGCAGGGATGGCCTTTaGAGAGGAGCAGCAGTCCCT +
Preference number: 4 (lower is better)
Translates to: LSGYKELGAHSIVRVGERCRDGL*RGAAVP
Trigger: AGGGACTGCTGCTCCTCTCCAAAGGCCATCCCTGCA...CCTCTCCCCGACACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp ATAGCTTTCAAGGGCCAGACCTCGAGAAGGGAGCCTGAGAAGGTTGGAAACCCGTTGGGGGTGCAGGGATaGCCTTTGGAGAGGAGCAGC +
Preference number: 4 (lower is better)
Translates to: IAFKGQTSRREPEKVGNPLGVQG*PLERSS
Trigger: GCTGCTCCTCTCCAAAGGCCATCCCTGCACCCCCAA...CGGGTTTCCAACCTTCTCAGGCTCCCTTCTCGAGGTCTGGCCCTTGAAAGCTAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp AAGGGACTGGATATGGGGTTTTCCGTCAGTGTTTGGGAAGGAAGGGCCTGGAAAGTCCAGGGCGTGCCTTaGGGGTGCAGGGATGGCCTT +
Preference number: 4 (lower is better)
Translates to: KGLDMGFSVSVWEGRAWKVQGVP*GCRDGL
Trigger: AAGGCCATCCCTGCACCCCCAAGGCACGCCCTGGAC...TTTCCAGGCCCTTCCTTCCCAAACACTGACGGAAAACCCCATATCCAGTCCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp ATAGCTTTCAAGGGCCAGACCTCGAGAAGGGAGCCTGAGAAGGTTGGAAACCCGCAGCCCCACTGGAACTaGTGTGTCTGGGGTCCATGC +
Preference number: 4 (lower is better)
Translates to: IAFKGQTSRREPEKVGNPQPHWN*CVWGPC
Trigger: GCATGGACCCCAGACACACCAGTTCCAGTGGGGCTG...CGGGTTTCCAACCTTCTCAGGCTCCCTTCTCGAGGTCTGGCCCTTGAAAGCTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp TCAGTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCCAGGATTCCCTTTCTCTaGAGCCTGCAGCTCTGGGAT +
Preference number: 4 (lower is better)
Translates to: SVFGKEGPGKKPLKAAHSRIPFL*SLQLWD
Trigger: ATCCCAGAGCTGCAGGCTTCAGAGAAAGGGAATCCT...GGAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACACTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp TCACTCCTCGGAGGCATGACGCACTTGGGGGTGGAACATAGCTTTCAAGGGCCAGAAGTGGAGTCTGCCTaGTTCAGGGAGTTGCCATCC +
Preference number: 4 (lower is better)
Translates to: SLLGGMTHLGVEHSFQGPEVESA*FRELPS
Trigger: GGATGGCAACTCCCTGAAGCAGGCAGACTCCACTTC...TGGCCCTTGAAAGCTATGTTCCACCCCCAAGTGCGTCATGCCTCCGAGGAGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GACCTGGCCCACTGGAAGCCTCAAACCACCAGTCTGGCCATCTCAGGAGCCTGCACAAAGTTTCTGAATTaGCCACAGCTGCAGGACCTG +
Preference number: 4 (lower is better)
Translates to: DLAHWKPQTTSLAISGACTKFLN*PQLQDL
Trigger: CAGGTCCTGCAGCTGTGGGCAATTCAGAAACTTTGT...GCAGGCTCCTGAGATGGCCAGACTGGTGGTTTGAGGCTTCCAGTGGGCCAGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCCTCGTACCTTCTGGCTGTCTaGCAGACACTGTTTCTGCCA +
Preference number: 4 (lower is better)
Translates to: VFGKEGPGKKPLKAAHSSYLLAV*QTLFLP
Trigger: TGGCAGAAACAGTGTCTGCCAGACAGCCAGAAGGTA...CGAGGAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp CCAATACCCAAGACCAGCTGTCACCCAGGTGGTCGACGTCCTGAGACCTTCTGGGGGGGTCGACTTTTCTaGAGGGATCTGTCTTCTCAG +
Preference number: 4 (lower is better)
Translates to: PIPKTSCHPGGRRPETFWGGRLF*RDLSSQ
Trigger: CTGAGAAGACAGATCCCTCCAGAAAAGTCGACCCCC...CCAGAAGGTCTCAGGACGTCGACCACCTGGGTGACAGCTGGTCTTGGGTATTGG
57% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp TGGCCTTACATCAATCCTGGCACACGTGAAAGAACACTTAAAGATCTGCATGCAGTTGTCGCGAGTCCGTaGCCCTGGAGGGGGCGCCGC +
Preference number: 4 (lower is better)
Translates to: WPYINPGTRERTLKDLHAVVASP*PWRGRR
Trigger: GCGGCGCCCCCTCCAGGGCCACGGACTCGCGACAAC...TGCATGCAGATCTTTAAGTGTTCTTTCACGTGTGCCAGGATTGATGTAAGGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp TGGCCTTACATCAATCCTGGCACACGTGAAAGAACACTTAAAGATCTGCATGCACGCCAACACCGAGCCTaGCCGCACCCGCACCTCGGG +
Preference number: 4 (lower is better)
Translates to: WPYINPGTRERTLKDLHARQHRA*PHPHLG
Trigger: CCCGAGGTGCGGGTGCGGCCAGGCTCGGTGTTGGCG...TGCATGCAGATCTTTAAGTGTTCTTTCACGTGTGCCAGGATTGATGTAAGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCCCTCCCTGGATCCATTTTGCCTaGGGATATAGTCTCTACCTT +
Preference number: 4 (lower is better)
Translates to: GQHHVETLTAQRLTPSPPWIHFA*GYSLYL
Trigger: AAGGTAGAGACTATATCCTCAGGCAAAATGGATCCA...GGGAGGGGAGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCCTCGAGGAGCCACAGTTACTaGGGATACAAGCTCTGTCTT +
Preference number: 4 (lower is better)
Translates to: VFGKEGPGKKPLKAAHSSRSHSY*GYKLCL
Trigger: AAGACAGAGCTTGTATCCTCAGTAACTGTGGCTCCT...CGAGGAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GTCAGTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCTCTGGGTTATCACTTTaGCCCCAGATTTGGGCTCAG +
Preference number: 4 (lower is better)
Translates to: VSVWEGRAWKEAPEGGSLSGLSL*PQIWAQ
Trigger: CTGAGCCCAAATCTGGGGTCAAAGTGATAACCCAGA...GAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACACTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp AAGGGACTGGATATGGGGTTTTCCGTCAGTGTTTGGGAAGGAAGGGCCTGGAAAGCCTTATCTGGGGCCTaGGGGACAGTCTTGGCGGAA +
Preference number: 4 (lower is better)
Translates to: KGLDMGFSVSVWEGRAWKALSGA*GTVLAE
Trigger: TTCCGCCAAGACTGTCCCTCAGGCCCCAGATAAGGC...TTTCCAGGCCCTTCCTTCCCAAACACTGACGGAAAACCCCATATCCAGTCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGTCGGGGAGAGGGATATGTGTCTGGGGTCCATaGCTAAACTCTGGTCCAGGG +
Preference number: 4 (lower is better)
Translates to: VVTRNLGLTALCVSGRGICVWGP*LNSGPG
Trigger: CCCTGGACCAGAGTTTAGGCATGGACCCCAGACACA...TATCCCTCTCCCCGACACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCACTTTGCTGGAACATaGCATGTCTACTTTTCCCAA +
Preference number: 4 (lower is better)
Translates to: GHGASTMWRPSLLRDSLPHFAGT*HVYFSQ
Trigger: TTGGGAAAAGTAGACATGCCATGTTCCAGCAAAGTG...AGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCCCTCCCAGAATCTGTCTTTGCTaGAAACATACCTTCTGGCTG +
Preference number: 4 (lower is better)
Translates to: GQHHVETLTAQRLTPSPPRICLC*KHTFWL
Trigger: CAGCCAGAAGGTATGTTTCCAGCAAAGACAGATTCT...GGGAGGGGAGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp ATGCCCTGGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCCTCTTCTGGAATGCATaGCATTCTCTGTTTTTGGAT +
Preference number: 4 (lower is better)
Translates to: MPWPRGQHHVETLTAQRLLFWNA*HSLFLD
Trigger: ATCCAAAAACAGAGAATGTCATGCATTCCAGAAGAG...GAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCCAGGGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp ATAGCTTTCAAGGGCCAGACCTCGAGAAGGGAGCCTGAGAAGGTTGGAAACCCGAGGATTCCCTTTCTCTaGAGCCTGCAGCTCTGGGAT +
Preference number: 4 (lower is better)
Translates to: IAFKGQTSRREPEKVGNPRIPFL*SLQLWD
Trigger: ATCCCAGAGCTGCAGGCTTCAGAGAAAGGGAATCCT...CGGGTTTCCAACCTTCTCAGGCTCCCTTCTCGAGGTCTGGCCCTTGAAAGCTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTTGTAGAATCTGTCTTTaGTGGAAACATACCTTCTGG +
Preference number: 4 (lower is better)
Translates to: GHGASTMWRPSLLRDSLPCRICL*WKHTFW
Trigger: CCAGAAGGTATGTTTCCAGCAAAGACAGATTCTACA...AGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp AAGGGACTGGATATGGGGTTTTCCGTCAGTGTTTGGGAAGGAAGGGCCTGGAAAGGTGTGCCATCTGATTaGCTGAGAGAGGACGTGGCC +
Preference number: 4 (lower is better)
Translates to: KGLDMGFSVSVWEGRAWKGVPSD*LREDVA
Trigger: GGCCACGTCCTCTCTCAGGCAATCAGATGGCACACC...TTTCCAGGCCCTTCCTTCCCAAACACTGACGGAAAACCCCATATCCAGTCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp AAGGGACTGGATATGGGGTTTTCCGTCAGTGTTTGGGAAGGAAGGGCCTGGAAACTGAGGCTGTGGGAGTaGCTTCTGCTGAGGACATGG +
Preference number: 4 (lower is better)
Translates to: KGLDMGFSVSVWEGRAWKLRLWE*LLLRTW
Trigger: CCATGTCCTCAGCAGAAGCCACTCCCACAGCCTCAG...TTTCCAGGCCCTTCCTTCCCAAACACTGACGGAAAACCCCATATCCAGTCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp CAGGGCTGGGTGTGTGGGCTCCTGGCCACAAAGGGACTGGATATGGGGTTTTCCCTTCTCAGACAGTTGTaGCTGCTCCTTTTGCAAAGA +
Preference number: 4 (lower is better)
Translates to: QGWVCGLLATKGLDMGFSLLRQL*LLLLQR
Trigger: TCTTTGCAAAAGGAGCAGCCACAACTGTCTGAGAAG...GGAAAACCCCATATCCAGTCCCTTTGTGGCCAGGAGCCCACACACCCAGCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GCGGGAGTGGAGCAAAAGTCTGTGAGGGAACCAGGGTGGAGTTGTCAGGGCTGGTGGATCCATTTTGCCTaGGGATATAGTCTCTACCTT +
Preference number: 4 (lower is better)
Translates to: AGVEQKSVREPGWSCQGWWIHFA*GYSLYL
Trigger: AAGGTAGAGACTATATCCTCAGGCAAAATGGATCCA...CCAGCCCTGACAACTCCACCCTGGTTCCCTCACAGACTTTTGCTCCACTCCCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GACCTGGCCCACTGGAAGCCTCAAACCACCAGTCTGGCCATCTCAGGAGCCTGCCTCTTCTGGAATGCATaGCATTCTCTGTTTTTGGAT +
Preference number: 4 (lower is better)
Translates to: DLAHWKPQTTSLAISGACLFWNA*HSLFLD
Trigger: ATCCAAAAACAGAGAATGTCATGCATTCCAGAAGAG...GCAGGCTCCTGAGATGGCCAGACTGGTGGTTTGAGGCTTCCAGTGGGCCAGGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GTAGTTCCCGCGGGAGTGGAGCAAAAGTCTGTGAGGGAACCAGGGTGGAGTTGTACTGAGGGTCCTTCTTaGCTGAGGACAAAGTTTCTG +
Preference number: 4 (lower is better)
Translates to: VVPAGVEQKSVREPGWSCTEGPS*LRTKFL
Trigger: CAGAAACTTTGTCCTCAGTCAAGAAGGACCCTCAGT...ACAACTCCACCCTGGTTCCCTCACAGACTTTTGCTCCACTCCCGCGGGAACTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GGACCAGGGCACTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGACTGAGGGTCCTTCTTaGCTGAGGACAAAGTTTCTG +
Preference number: 4 (lower is better)
Translates to: GPGHSVVTRNLGLTALCVTEGPS*LRTKFL
Trigger: CAGAAACTTTGTCCTCAGTCAAGAAGGACCCTCAGT...CACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAGTGCCCTGGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp CCAATACCCAAGACCAGCTGTCACCCAGGTGGTCGACGTCCTGAGACCTTCTGGTCGGGATTCCCCTTTTaGGATGTTTGCATGTTTCCT +
Preference number: 4 (lower is better)
Translates to: PIPKTSCHPGGRRPETFWSGFPF*DVCMFP
Trigger: AGGAAACATGCAAACATCTCAAAAGGGGAATCCCGA...CCAGAAGGTCTCAGGACGTCGACCACCTGGGTGACAGCTGGTCTTGGGTATTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp CCTGGCACACGTGAAAGAACACTTAAAGATCTGCATGCAGTCTTTCCCCGTTTTTCTCTGGGGCTGGGCTaGGCTGTAGGGTGTGCCATC +
Preference number: 4 (lower is better)
Translates to: PGTRERTLKDLHAVFPRFSLGLG*AVGCAI
Trigger: GATGGCACACCCTACAGCTCAGCCCAGCCCCAGAGA...AAAACGGGGAAAGACTGCATGCAGATCTTTAAGTGTTCTTTCACGTGTGCCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp CCTGGCACACGTGAAAGAACACTTAAAGATCTGCATGCAGTCTTTCCCCGTTTTGGCGTGCCTTGGGGGTaGAGGGATGGCCTTTGGAGA +
Preference number: 4 (lower is better)
Translates to: PGTRERTLKDLHAVFPRFGVPWG*RDGLWR
Trigger: TCTCCAAAGGCCATCCCTGCACCCCCAAGGCACGCC...AAAACGGGGAAAGACTGCATGCAGATCTTTAAGTGTTCTTTCACGTGTGCCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GTAGTTCCCGCGGGAGTGGAGCAAAAGTCTGTGAGGGAACCAGGGTGGAGTTGTACAAAGTTTCTGAATTaGCCACAGCTGCAGGACCTG +
Preference number: 4 (lower is better)
Translates to: VVPAGVEQKSVREPGWSCTKFLN*PQLQDL
Trigger: CAGGTCCTGCAGCTGTGGGCAATTCAGAAACTTTGT...ACAACTCCACCCTGGTTCCCTCACAGACTTTTGCTCCACTCCCGCGGGAACTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp CTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGTCGGGGAGAGGTGGAAACATACCTTCTaGCTGTCTGGCAGACACTGT +
Preference number: 4 (lower is better)
Translates to: LSGYKELGAHSIVRVGERWKHTF*LSGRHC
Trigger: ACAGTGTCTGCCAGACAGCCAGAAGGTATGTTTCCA...CCTCTCCCCGACACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp TCAGTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCCTGCTTTTCTAGGAGATaGAGATGCAGAGTCAGCCTT +
Preference number: 4 (lower is better)
Translates to: SVFGKEGPGKKPLKAAHSCFSRR*RCRVSL
Trigger: AAGGCTGACTCTGCATCTCCATCTCCTAGAAAAGCA...GGAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp ATAGCTTTCAAGGGCCAGACCTCGAGAAGGGAGCCTGAGAAGGTTGGAAACCCGAGGAGCCACAGTTACTaGGGATACAAGCTCTGTCTT +
Preference number: 4 (lower is better)
Translates to: IAFKGQTSRREPEKVGNPRSHSY*GYKLCL
Trigger: AAGACAGAGCTTGTATCCTCAGTAACTGTGGCTCCT...CGGGTTTCCAACCTTCTCAGGCTCCCTTCTCGAGGTCTGGCCCTTGAAAGCTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GTAGTTCCCGCGGGAGTGGAGCAAAAGTCTGTGAGGGAACCAGGGTGGAGTTGTCTTCTCAGACAGTTGTaGCTGCTCCTTTTGCAAAGA +
Preference number: 4 (lower is better)
Translates to: VVPAGVEQKSVREPGWSCLLRQL*LLLLQR
Trigger: TCTTTGCAAAAGGAGCAGCCACAACTGTCTGAGAAG...ACAACTCCACCCTGGTTCCCTCACAGACTTTTGCTCCACTCCCGCGGGAACTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp TCACTCCTCGGAGGCATGACGCACTTGGGGGTGGAACATAGCTTTCAAGGGCCATGCTTTTCTAGGAGATaGAGATGCAGAGTCAGCCTT +
Preference number: 4 (lower is better)
Translates to: SLLGGMTHLGVEHSFQGPCFSRR*RCRVSL
Trigger: AAGGCTGACTCTGCATCTCCATCTCCTAGAAAAGCA...TGGCCCTTGAAAGCTATGTTCCACCCCCAAGTGCGTCATGCCTCCGAGGAGTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGTCGGGGAGAGGGATATCGGGATTCCCCTTTTaGGATGTTTGCATGTTTCCT +
Preference number: 4 (lower is better)
Translates to: VVTRNLGLTALCVSGRGISGFPF*DVCMFP
Trigger: AGGAAACATGCAAACATCTCAAAAGGGGAATCCCGA...TATCCCTCTCCCCGACACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp TGGCCTTACATCAATCCTGGCACACGTGAAAGAACACTTAAAGATCTGCATGCAGCCTTATCTGGGGCCTaGGGGACAGTCTTGGCGGAA +
Preference number: 4 (lower is better)
Translates to: WPYINPGTRERTLKDLHAALSGA*GTVLAE
Trigger: TTCCGCCAAGACTGTCCCTCAGGCCCCAGATAAGGC...TGCATGCAGATCTTTAAGTGTTCTTTCACGTGTGCCAGGATTGATGTAAGGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GAAAGGTTTTTATTACCAATGTATACTGTGACAGTTAGTAGCCAAAAACGGAGGCCACCCGCGCCGTCCTaGGGAGACATGGGGCTCACC +
Preference number: 4 (lower is better)
Translates to: ERFLLPMYTVTVSSQKRRPPAPS*GDMGLT
Trigger: GGTGAGCCCCATGTCTCCGCAGGACGGCGCGGGTGG...CCTCCGTTTTTGGCTACTAACTGTCACAGTATACATTGGTAATAAAAACCTTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GGTGGCCTTACATCAATCCTGGCACACGTGAAAGAACACTTAAAGATCTGCATGTGCAGGGATGGCCTTTaGAGAGGAGCAGCAGTCCCT +
Preference number: 4 (lower is better)
Translates to: GGLTSILAHVKEHLKICMCRDGL*RGAAVP
Trigger: AGGGACTGCTGCTCCTCTCCAAAGGCCATCCCTGCA...CATGCAGATCTTTAAGTGTTCTTTCACGTGTGCCAGGATTGATGTAAGGCCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp CTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGTCGGGGAGAGGAGAATCTGTCTTTGCTaGAAACATACCTTCTGGCTG +
Preference number: 4 (lower is better)
Translates to: LSGYKELGAHSIVRVGERRICLC*KHTFWL
Trigger: CAGCCAGAAGGTATGTTTCCAGCAAAGACAGATTCT...CCTCTCCCCGACACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GGTGGCCTTACATCAATCCTGGCACACGTGAAAGAACACTTAAAGATCTGCATGAGTCACCTCAGCTTTTaGAGCAGACAGGGACCCCCA +
Preference number: 4 (lower is better)
Translates to: GGLTSILAHVKEHLKICMSHLSF*SRQGPP
Trigger: TGGGGGTCCCTGTCTGCTGCAAAAGCTGAGGTGACT...CATGCAGATCTTTAAGTGTTCTTTCACGTGTGCCAGGATTGATGTAAGGCCACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GGTGGCCTTACATCAATCCTGGCACACGTGAAAGAACACTTAAAGATCTGCATGCCTTTCGTGTGGAAGTaGAGTCTGCCTGCTTCAGGG +
Preference number: 4 (lower is better)
Translates to: GGLTSILAHVKEHLKICMPFVWK*SLPASG
Trigger: CCCTGAAGCAGGCAGACTCCACTTCCACACGAAAGG...CATGCAGATCTTTAAGTGTTCTTTCACGTGTGCCAGGATTGATGTAAGGCCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp ATAGCTTTCAAGGGCCAGACCTCGAGAAGGGAGCCTGAGAAGGTTGGAAACCCGCACTTTGCTGGAACATaGCATGTCTACTTTTCCCAA +
Preference number: 4 (lower is better)
Translates to: IAFKGQTSRREPEKVGNPHFAGT*HVYFSQ
Trigger: TTGGGAAAAGTAGACATGCCATGTTCCAGCAAAGTG...CGGGTTTCCAACCTTCTCAGGCTCCCTTCTCGAGGTCTGGCCCTTGAAAGCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp CCTGGCACACGTGAAAGAACACTTAAAGATCTGCATGCAGTCTTTCCCCGTTTTAGACCCACCTTCTCCTaGGGAGACAGCCTCTTTCTT +
Preference number: 4 (lower is better)
Translates to: PGTRERTLKDLHAVFPRFRPTFS*GDSLFL
Trigger: AAGAAAGAGGCTGTCTCCTCAGGAGAAGGTGGGTCT...AAAACGGGGAAAGACTGCATGCAGATCTTTAAGTGTTCTTTCACGTGTGCCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR TCA 90 bp GGTGGCCTTACATCAATCCTGGCACACGTGAAAGAACACTTAAAGATCTGCATGGAGGTCTGTCTTTCCTaGAGACTCGGGATTCCCCTT +
Preference number: 4 (lower is better)
Translates to: GGLTSILAHVKEHLKICMEVCLS*RLGIPL
Trigger: AAGGGGAATCCCGAGTCTTCAGGAAAGACAGACCTC...CATGCAGATCTTTAAGTGTTCTTTCACGTGTGCCAGGATTGATGTAAGGCCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGTCGGGGAGAGGGATATGTAGAATCTGTCTTTaGTGGAAACATACCTTCTGG +
Preference number: 4 (lower is better)
Translates to: VVTRNLGLTALCVSGRGICRICL*WKHTFW
Trigger: CCAGAAGGTATGTTTCCAGCAAAGACAGATTCTACA...TATCCCTCTCCCCGACACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GAAAGGTTTTTATTACCAATGTATACTGTGACAGTTAGTAGCCAAAAACGGAGGGCTCAGTACTCCCTGTaGCCCCGGTGTCCACCCGTG +
Preference number: 4 (lower is better)
Translates to: ERFLLPMYTVTVSSQKRRAQYSL*PRCPPV
Trigger: CACGGGTGGACACCGGGGCCACAGGGAGTACTGAGC...CCTCCGTTTTTGGCTACTAACTGTCACAGTATACATTGGTAATAAAAACCTTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp TGGCCTTACATCAATCCTGGCACACGTGAAAGAACACTTAAAGATCTGCATGCACCTTTCTCTGAAGCCTaGAGCTCTGGGATGCCTTCT +
Preference number: 4 (lower is better)
Translates to: WPYINPGTRERTLKDLHAPFSEA*SSGMPS
Trigger: AGAAGGCATCCCAGAGCTGCAGGCTTCAGAGAAAGG...TGCATGCAGATCTTTAAGTGTTCTTTCACGTGTGCCAGGATTGATGTAAGGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR GCA 90 bp GAAAGGTTTTTATTACCAATGTATACTGTGACAGTTAGTAGCCAAAAACGGAGGCCTGCTTCAGGGAGTTaGCATCCATCTTCCCCGAGA +
Preference number: 4 (lower is better)
Translates to: ERFLLPMYTVTVSSQKRRPASGS*HPSSPR
Trigger: TCTCGGGGAAGATGGATGGCAACTCCCTGAAGCAGG...CCTCCGTTTTTGGCTACTAACTGTCACAGTATACATTGGTAATAAAAACCTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CCA 90 bp GAAAGGTTTTTATTACCAATGTATACTGTGACAGTTAGTAGCCAAAAACGGAGGTGGAAACATACCTTCTaGCTGTCTGGCAGACACTGT +
Preference number: 4 (lower is better)
Translates to: ERFLLPMYTVTVSSQKRRWKHTF*LSGRHC
Trigger: ACAGTGTCTGCCAGACAGCCAGAAGGTATGTTTCCA...CCTCCGTTTTTGGCTACTAACTGTCACAGTATACATTGGTAATAAAAACCTTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 90 bp GGCCCCGTGGCCACCGAGCGTGTCTCGGCGGCTCCCAGCGACACCTaGAGGCCCGCGTCCCGGCGCGATGGTGGCCTGGGCGCGGGGCTG +
Preference number: 5 (lower is better)
Translates to: GPVATERVSAAPSDT*RPASRRDGGLGAGL
Trigger: CAGCCCCGCGCCCAGGCCACCATCGCGCCGGGACGCGGGCCTGCAGGTGTCGCTGGGAGCCGCCGAGACACGCTCGGTGGCCACGGGGCC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 90 bp CGCGATGGTGGCCTGGGCGCGGGGCTGGGCGCGCGCGGCGCCGCCTaGAAGCTGAAGGCCGGGCCACCCGCGCCGTCCTGCGGAGACATG +
Preference number: 5 (lower is better)
Translates to: RDGGLGAGLGARGAA*KLKAGPPAPSCGDM
Trigger: CATGTCTCCGCAGGACGGCGCGGGTGGCCCGGCCTTCAGCTTCCAGGCGGCGCCGCGCGCGCCCAGCCCCGCGCCCAGGCCACCATCGCG
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 90 bp CTCGGTCGCCTCCTGGGGCGCCAAGGCGGCCGCCAACACCGAGCCTaGCCGCACCCGCACCTCGGGGAAGACGGGCGGCACGGCGGGCGG +
Preference number: 5 (lower is better)
Translates to: LGRLLGRQGGRQHRA*PHPHLGEDGRHGGR
Trigger: CCGCCCGCCGTGCCGCCCGTCTTCCCCGAGGTGCGGGTGCGGCCAGGCTCGGTGTTGGCGGCCGCCTTGGCGCCCCAGGAGGCGACCGAG
80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 90 bp TGGGGCTCACCGCCACCGAGACGCAGGCCTGCGCGCCTGCCTGGGTaGCCGCGTCCTCGCGTGGCGGTGGCGCTCCGGCGTCCCACGACG +
Preference number: 5 (lower is better)
Translates to: WGSPPPRRRPARLPG*PRPRVAVALRRPTT
Trigger: CGTCGTGGGACGCCGGAGCGCCACCGCCACGCGAGGACGCGGGCACCCAGGCAGGCGCGCAGGCCTGCGTCTCGGTGGCGGTGAGCCCCA
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 90 bp CCGCACCCGCACCTCGGGGAAGACGGGCGGCACGGCGGGCGGCGCTaGGGCCTGCGGAGTCATGGGCCCCGTGGCCACCGAGCGTGTCTC +
Preference number: 5 (lower is better)
Translates to: PHPHLGEDGRHGGRR*GLRSHGPRGHRACL
Trigger: GAGACACGCTCGGTGGCCACGGGGCCCATGACTCCGCAGGCCGCAGCGCCGCCCGCCGTGCCGCCCGTCTTCCCCGAGGTGCGGGTGCGG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 90 bp GCGGCACGGCGGGCGGCGCTGCGGCCTGCGGAGTCATGGGCCCCGTaGCCACCGAGCGTGTCTCGGCGGCTCCCAGCGACACCTGCAGGC +
Preference number: 5 (lower is better)
Translates to: AARRAALRPAESWAP*PPSVSRRLPATPAG
Trigger: GCCTGCAGGTGTCGCTGGGAGCCGCCGAGACACGCTCGGTGGCCACGGGGCCCATGACTCCGCAGGCCGCAGCGCCGCCCGCCGTGCCGC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 90 bp GGCGCACACTCTGCAGCAGCGCGCGGAAGAGGCCCGGCGGGCGCTTaGCGGCGCCCTCCGCCGGTGCGGTGCGCACAGAGCCTGCACGGC +
Preference number: 5 (lower is better)
Translates to: GAHSAAARGRGPAGA*RRPPPVRCAQSLHG
Trigger: GCCGTGCAGGCTCTGTGCGCACCGCACCGGCGGAGGGCGCCGCCAAGCGCCCGCCGGGCCTCTTCCGCGCGCTGCTGCAGAGTGTGCGCC
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 90 bp CGGAGACATGGGGCTCACCGCCACCGAGACGCAGGCCTGCGCGCCTaGCTGGGTGCCCGCGTCCTCGCGTGGCGGTGGCGCTCCGGCGTC +
Preference number: 5 (lower is better)
Translates to: RRHGAHRHRDAGLRA*LGARVLAWRWRSGV
Trigger: GACGCCGGAGCGCCACCGCCACGCGAGGACGCGGGCACCCAGGCAGGCGCGCAGGCCTGCGTCTCGGTGGCGGTGAGCCCCATGTCTCCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 90 bp CGCGGCGCCGCCTGGAAGCTGAAGGCCGGGCCACCCGCGCCGTCCTaGGGAGACATGGGGCTCACCGCCACCGAGACGCAGGCCTGCGCG +
Preference number: 5 (lower is better)
Translates to: RGAAWKLKAGPPAPS*GDMGLTATETQACA
Trigger: CGCGCAGGCCTGCGTCTCGGTGGCGGTGAGCCCCATGTCTCCGCAGGACGGCGCGGGTGGCCCGGCCTTCAGCTTCCAGGCGGCGCCGCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 90 bp GACATGGGGCTCACCGCCACCGAGACGCAGGCCTGCGCGCCTGCCTaGGTGCCCGCGTCCTCGCGTGGCGGTGGCGCTCCGGCGTCCCAC +
Preference number: 5 (lower is better)
Translates to: DMGLTATETQACAPA*VPASSRGGGAPASH
Trigger: GTGGGACGCCGGAGCGCCACCGCCACGCGAGGACGCGGGCACCCAGGCAGGCGCGCAGGCCTGCGTCTCGGTGGCGGTGAGCCCCATGTC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 90 bp CCGTCCTGCGGAGACATGGGGCTCACCGCCACCGAGACGCAGGCCTaGGCGCCTGCCTGGGTGCCCGCGTCCTCGCGTGGCGGTGGCGCT +
Preference number: 5 (lower is better)
Translates to: PSCGDMGLTATETQA*APAWVPASSRGGGA
Trigger: AGCGCCACCGCCACGCGAGGACGCGGGCACCCAGGCAGGCGCGCAGGCCTGCGTCTCGGTGGCGGTGAGCCCCATGTCTCCGCAGGACGG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 90 bp GCAGGCCTGCGCGCCTGCCTGGGTGCCCGCGTCCTCGCGTGGCGGTaGCGCTCCGGCGTCCCACGACGGCGCCTTGGTGAAGTTGTCGCG +
Preference number: 5 (lower is better)
Translates to: AGLRACLGARVLAWR*RSGVPRRRLGEVVA
Trigger: CGCGACAACTTCACCAAGGCGCCGTCGTGGGACGCCGGAGCGCCACCGCCACGCGAGGACGCGGGCACCCAGGCAGGCGCGCAGGCCTGC
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 90 bp CCCTTCTCGTCCCAGCTCACGTCGCGCACCGGCTCGGTCGCCTCCTaGGGCGCCAAGGCGGCCGCCAACACCGAGCCTGGCCGCACCCGC +
Preference number: 5 (lower is better)
Translates to: PFSSQLTSRTGSVAS*GAKAAANTEPGRTR
Trigger: GCGGGTGCGGCCAGGCTCGGTGTTGGCGGCCGCCTTGGCGCCCCAGGAGGCGACCGAGCCGGTGCGCGACGTGAGCTGGGACGAGAAGGG
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS TCA 90 bp CCTCGCGTGGCGGTGGCGCTCCGGCGTCCCACGACGGCGCCTTGGTaGAGTTGTCGCGAGTCCGTGGCCCTGGAGGGGGCGCCGCAGCCT +
Preference number: 5 (lower is better)
Translates to: PRVAVALRRPTTAPW*SCRESVALEGAPQP
Trigger: AGGCTGCGGCGCCCCCTCCAGGGCCACGGACTCGCGACAACTTCACCAAGGCGCCGTCGTGGGACGCCGGAGCGCCACCGCCACGCGAGG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 90 bp CGAGACGCAGGCCTGCGCGCCTGCCTGGGTGCCCGCGTCCTCGCGTaGCGGTGGCGCTCCGGCGTCCCACGACGGCGCCTTGGTGAAGTT +
Preference number: 5 (lower is better)
Translates to: RDAGLRACLGARVLA*RWRSGVPRRRLGEV
Trigger: AACTTCACCAAGGCGCCGTCGTGGGACGCCGGAGCGCCACCGCCACGCGAGGACGCGGGCACCCAGGCAGGCGCGCAGGCCTGCGTCTCG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 90 bp GTCCCACGACGGCGCCTTGGTGAAGTTGTCGCGAGTCCGTGGCCCTaGAGGGGGCGCCGCAGCCTCCGCGCTGGGGCTCTTCTGAGCCGC +
Preference number: 5 (lower is better)
Translates to: VPRRRLGEVVASPWP*RGRRSLRAGALLSR
Trigger: GCGGCTCAGAAGAGCCCCAGCGCGGAGGCTGCGGCGCCCCCTCCAGGGCCACGGACTCGCGACAACTTCACCAAGGCGCCGTCGTGGGAC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 90 bp TCCGGCGTCCCACGACGGCGCCTTGGTGAAGTTGTCGCGAGTCCGTaGCCCTGGAGGGGGCGCCGCAGCCTCCGCGCTGGGGCTCTTCTG +
Preference number: 5 (lower is better)
Translates to: SGVPRRRLGEVVASP*PWRGRRSLRAGALL
Trigger: CAGAAGAGCCCCAGCGCGGAGGCTGCGGCGCCCCCTCCAGGGCCACGGACTCGCGACAACTTCACCAAGGCGCCGTCGTGGGACGCCGGA
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp ATGCCCTGGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCGGTCCAGGGCGTGCCTaGGGGGTGCAGGGATGGCCT +
Preference number: 5 (lower is better)
Translates to: MPWPRGQHHVETLTAQRLGPGRA*GVQGWP
Trigger: AGGCCATCCCTGCACCCCCAAGGCACGCCCTGGACC...GAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCCAGGGCAT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 90 bp TCTGGCTGGTGCTGGCAGAGGGCTCCCGCTCTGGCAGGGATCCGATaGTCCTGGTATCTCTCTGGGGCTGGGCTGAGCTGTAGGGTGTGC +
Preference number: 5 (lower is better)
Translates to: SGWCWQRAPALAGIR*SWYLSGAGLSCRVC
Trigger: GCACACCCTACAGCTCAGCCCAGCCCCAGAGAGATACCAGGAGCATCGGATCCCTGCCAGAGCGGGAGCCCTCTGCCAGCACCAGCCAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 90 bp TGGTGCTGGCAGAGGGCTCCCGCTCTGGCAGGGATCCGATGCTCCTaGTATCTCTCTGGGGCTGGGCTGAGCTGTAGGGTGTGCCATCTG +
Preference number: 5 (lower is better)
Translates to: WCWQRAPALAGIRCS*YLSGAGLSCRVCHL
Trigger: CAGATGGCACACCCTACAGCTCAGCCCAGCCCCAGAGAGATACCAGGAGCATCGGATCCCTGCCAGAGCGGGAGCCCTCTGCCAGCACCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp CCTGGCCCACTGGAAGCCTCAAACCACCAGTCTGGCCATCTCAGGAGCCTGCCTCAGTCACCTCAGCTTTaGCAGCAGACAGGGACCCCC +
Preference number: 5 (lower is better)
Translates to: PGPLEASNHQSGHLRSLPQSPQL*QQTGTP
Trigger: GGGGGTCCCTGTCTGCTGCAAAAGCTGAGGTGACTG...AGGCAGGCTCCTGAGATGGCCAGACTGGTGGTTTGAGGCTTCCAGTGGGCCAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp TCAGTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCCGGCGCCTTGGTGAAGTaGTCGCGAGTCCGTGGCCCT +
Preference number: 5 (lower is better)
Translates to: SVFGKEGPGKKPLKAAHSGALVK*SRVRGP
Trigger: AGGGCCACGGACTCGCGACAACTTCACCAAGGCGCC...GGAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACACTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS TCA 90 bp CTCTCTGGGGCTGGGCTGAGCTGTAGGGTGTGCCATCTGATTGCCTaGGAGAGGACGTGGCCTTATCTGGGGCCTGAGGGACAGTCTTGG +
Preference number: 5 (lower is better)
Translates to: LSGAGLSCRVCHLIA*ERTWPYLGPEGQSW
Trigger: CCAAGACTGTCCCTCAGGCCCCAGATAAGGCCACGTCCTCTCTCAGGCAATCAGATGGCACACCCTACAGCTCAGCCCAGCCCCAGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp GCGGGAGTGGAGCAAAAGTCTGTGAGGGAACCAGGGTGGAGTTGTCAGGGCTGGCTGCCTTTCCCTGGCTaGCAGAGCCTGCCTTGCTTG +
Preference number: 5 (lower is better)
Translates to: AGVEQKSVREPGWSCQGWLPFPG*QSLPCL
Trigger: CAAGCAAGGCAGGCTCTGCAAGCCAGGGAAAGGCAG...CCAGCCCTGACAACTCCACCCTGGTTCCCTCACAGACTTTTGCTCCACTCCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp CCAATACCCAAGACCAGCTGTCACCCAGGTGGTCGACGTCCTGAGACCTTCTGGTCCCACGACGGCGCCTaGGTGAAGTTGTCGCGAGTC +
Preference number: 5 (lower is better)
Translates to: PIPKTSCHPGGRRPETFWSHDGA*VKLSRV
Trigger: GACTCGCGACAACTTCACCAAGGCGCCGTCGTGGGA...CCAGAAGGTCTCAGGACGTCGACCACCTGGGTGACAGCTGGTCTTGGGTATTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp TCAGTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCCCAGTCACCTCAGCTTTaGCAGCAGACAGGGACCCCC +
Preference number: 5 (lower is better)
Translates to: SVFGKEGPGKKPLKAAHSQSPQL*QQTGTP
Trigger: GGGGGTCCCTGTCTGCTGCAAAAGCTGAGGTGACTG...GGAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACACTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp GGACCAGGGCACTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGTCCCACGACGGCGCCTaGGTGAAGTTGTCGCGAGTC +
Preference number: 5 (lower is better)
Translates to: GPGHSVVTRNLGLTALCVSHDGA*VKLSRV
Trigger: GACTCGCGACAACTTCACCAAGGCGCCGTCGTGGGA...CACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAGTGCCCTGGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 90 bp CAGGGGAAACCGTTTCTGCCTTTCCCTGGCTTGCAGAGCCTGCCTTaGTTGAAGCCAGGGGATCGGTCTTCTCTGAGGCTGGGAGACTTG +
Preference number: 5 (lower is better)
Translates to: QGKPFLPFPGLQSLP*LKPGDRSSLRLGDL
Trigger: CAAGTCTCCCAGCCTCAGAGAAGACCGATCCCCTGGCTTCAAGCAAGGCAGGCTCTGCAAGCCAGGGAAAGGCAGAAACGGTTTCCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp GGAGCCTGCCTCAGCTGTAGGGTGAAAGGGTGGGAGCAGGTCCCTGTGCTCTTCCAGGGTCTGTCTTTTTaGTGGAGGCAGAATCTGTGT +
Preference number: 5 (lower is better)
Translates to: GACLSCRVKGWEQVPVLFQGLSF*WRQNLC
Trigger: ACACAGATTCTGCCTCCACAAAAAAGACAGACCCTG...GAAGAGCACAGGGACCTGCTCCCACCCTTTCACCCTACAGCTGAGGCAGGCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp GGCCACGGGGCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTGAAGGTCCTGTACTGTaGGAAGATGTAGAATCTGTC +
Preference number: 5 (lower is better)
Translates to: GHGASTMWRPSLLRDSLPEGPVL*EDVESV
Trigger: GACAGATTCTACATCTTCCAACAGTACAGGACCTTC...AGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGCCCCGTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS TCA 90 bp GCTTCAGGGAGTTGCCATCCATCTTCCCCGAGAACACAGGATTTCTaGTCTCTGAGGCTGTGGGAGTGGCTTCTGCTGAGGACATGGGCT +
Preference number: 5 (lower is better)
Translates to: ASGSCHPSSPRTQDF*SLRLWEWLLLRTWA
Trigger: AGCCCATGTCCTCAGCAGAAGCCACTCCCACAGCCTCAGAGATCAGAAATCCTGTGTTCTCGGGGAAGATGGATGGCAACTCCCTGAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 90 bp AGGGACAGTCTTGGCGGAAGTCTGAGACTCTGCTTTTCTAGGAGATaGAGATGCAGAGTCAGCCTTCCCCAGGGACACAGGCTCCACAGT +
Preference number: 5 (lower is better)
Translates to: RDSLGGSLRLCFSRR*RCRVSLPQGHRLHS
Trigger: ACTGTGGAGCCTGTGTCCCTGGGGAAGGCTGACTCTGCATCTCCATCTCCTAGAAAAGCAGAGTCTCAGACTTCCGCCAAGACTGTCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp AAGGGACTGGATATGGGGTTTTCCGTCAGTGTTTGGGAAGGAAGGGCCTGGAAACTGCCTTTCCCTGGCTaGCAGAGCCTGCCTTGCTTG +
Preference number: 5 (lower is better)
Translates to: KGLDMGFSVSVWEGRAWKLPFPG*QSLPCL
Trigger: CAAGCAAGGCAGGCTCTGCAAGCCAGGGAAAGGCAG...TTTCCAGGCCCTTCCTTCCCAAACACTGACGGAAAACCCCATATCCAGTCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp GTCAGTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCTTGTGGCTGCTCCTTTaGCAAAGACGGAGTTTCCAC +
Preference number: 5 (lower is better)
Translates to: VSVWEGRAWKEAPEGGSLLWLLL*QRRSFH
Trigger: GTGGAAACTCCGTCTTTGCAAAAGGAGCAGCCACAA...GAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACACTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp CAGGGCTGGGTGTGTGGGCTCCTGGCCACAAAGGGACTGGATATGGGGTTTTCCTGTCTTCTCAGACAGTaGTGGCTGCTCCTTTTGCAA +
Preference number: 5 (lower is better)
Translates to: QGWVCGLLATKGLDMGFSCLLRQ*WLLLLQ
Trigger: TTGCAAAAGGAGCAGCCACAACTGTCTGAGAAGACA...GGAAAACCCCATATCCAGTCCCTTTGTGGCCAGGAGCCCACACACCCAGCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 90 bp CTCAAGGACCCAGCCTCTTCCTTTCGTGTGGAAGTGGAGTCTGCCTaGTTCAGGGAGTTGCCATCCATCTTCCCCGAGAACACAGGATTT +
Preference number: 5 (lower is better)
Translates to: LKDPASSFRVEVESA*FRELPSIFPENTGF
Trigger: AAATCCTGTGTTCTCGGGGAAGATGGATGGCAACTCCCTGAAGCAGGCAGACTCCACTTCCACACGAAAGGAAGAGGCTGGGTCCTTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp GCCAGCACCATGTGGAGACCCTCACTGCTCAGAGACTCACTCCCTCCCCTCCCCGTTTTTGGATCCATTTaGCCTGAGGATATAGTCTCT +
Preference number: 5 (lower is better)
Translates to: ASTMWRPSLLRDSLPPLPVFGSI*PEDIVS
Trigger: AGAGACTATATCCTCAGGCAAAATGGATCCAAAAAC...GGGGAGGGGAGGGAGTGAGTCTCTGAGCAGTGAGGGTCTCCACATGGTGCTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp GTCAGTGTTTGGGAAGGAAGGGCCTGGAAAGAAGCCCCTGAAGGCGGCTCACTCCAGGGTCTGTCTTTTTaGTGGAGGCAGAATCTGTGT +
Preference number: 5 (lower is better)
Translates to: VSVWEGRAWKEAPEGGSLQGLSF*WRQNLC
Trigger: ACACAGATTCTGCCTCCACAAAAAAGACAGACCCTG...GAGTGAGCCGCCTTCAGGGGCTTCTTTCCAGGCCCTTCCTTCCCAAACACTGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp GTAGTTCCCGCGGGAGTGGAGCAAAAGTCTGTGAGGGAACCAGGGTGGAGTTGTGATACAAGCTCTGTCTaGCCTGACGATCCTGGAGTT +
Preference number: 5 (lower is better)
Translates to: VVPAGVEQKSVREPGWSCDTSSV*PDDPGV
Trigger: AACTCCAGGATCGTCAGGCAAGACAGAGCTTGTATC...ACAACTCCACCCTGGTTCCCTCACAGACTTTTGCTCCACTCCCGCGGGAACTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 90 bp TCTTCCTACCGTCCCAGGCTCCCCCTTTCCATAGATCATAGGCTCTaGCTTTCCCTTCAACATGGACTCTTCATTCCTCAAGGACCCAGC +
Preference number: 5 (lower is better)
Translates to: SSYRPRLPLSIDHRL*LSLQHGLFIPQGPS
Trigger: GCTGGGTCCTTGAGGAATGAAGAGTCCATGTTGAAGGGAAAGGCAGAGCCTATGATCTATGGAAAGGGGGAGCCTGGGACGGTAGGAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 90 bp GTGTCCACCCGTGTGGAGTTAACAGGATTCCCTTTCTCTGAAGCCTaGAGCTCTGGGATGCCTTCTGCTCTTTCTGAGGTCATGAGATCC +
Preference number: 5 (lower is better)
Translates to: VSTRVELTGFPFSEA*SSGMPSALSEVMRS
Trigger: GGATCTCATGACCTCAGAAAGAGCAGAAGGCATCCCAGAGCTGCAGGCTTCAGAGAAAGGGAATCCTGTTAACTCCACACGGGTGGACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 90 bp TTTCTGGAGGGATCTGTCTTCTCAGACAGTTGTGGCTGCTCCTTTTaGAAAGACGGAGTTTCCACCTTTCCCGGGGATGTGGCACCTGGA +
Preference number: 5 (lower is better)
Translates to: FLEGSVFSDSCGCSF*KDGVSTFPGDVAPG
Trigger: TCCAGGTGCCACATCCCCGGGAAAGGTGGAAACTCCGTCTTTGCAAAAGGAGCAGCCACAACTGTCTGAGAAGACAGATCCCTCCAGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp CTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGTCGGGGAGAGGTGTCTTCTCAGACAGTaGTGGCTGCTCCTTTTGCAA +
Preference number: 5 (lower is better)
Translates to: LSGYKELGAHSIVRVGERCLLRQ*WLLLLQ
Trigger: TTGCAAAAGGAGCAGCCACAACTGTCTGAGAAGACA...CCTCTCCCCGACACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp GGTGGCCTTACATCAATCCTGGCACACGTGAAAGAACACTTAAAGATCTGCATGGCCTGCTTCAGGGAGTaGCCATCCATCTTCCCCGAG +
Preference number: 5 (lower is better)
Translates to: GGLTSILAHVKEHLKICMACFRE*PSIFPE
Trigger: CTCGGGGAAGATGGATGGCAACTCCCTGAAGCAGGC...CATGCAGATCTTTAAGTGTTCTTTCACGTGTGCCAGGATTGATGTAAGGCCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp CTCAGTGGTTACAAGGAACTTGGGGCTCACAGCATTGTGCGTGTCGGGGAGAGGGAAGGTCCTGTACTGTaGGAAGATGTAGAATCTGTC +
Preference number: 5 (lower is better)
Translates to: LSGYKELGAHSIVRVGEREGPVL*EDVESV
Trigger: GACAGATTCTACATCTTCCAACAGTACAGGACCTTC...CCTCTCCCCGACACGCACAATGCTGTGAGCCCCAAGTTCCTTGTAACCACTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp GAAAGGTTTTTATTACCAATGTATACTGTGACAGTTAGTAGCCAAAAACGGAGGGGTCCAGGGCGTGCCTaGGGGGTGCAGGGATGGCCT +
Preference number: 5 (lower is better)
Translates to: ERFLLPMYTVTVSSQKRRGPGRA*GVQGWP
Trigger: AGGCCATCCCTGCACCCCCAAGGCACGCCCTGGACC...CCTCCGTTTTTGGCTACTAACTGTCACAGTATACATTGGTAATAAAAACCTTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS TCA 90 bp GACCCACCTTCTCCTGAGGAGACAGCCTCTTTCTTTCCAAGCAACTaGGGGTCCTTCTTGACTGAGGACAAAGTTTCTGAATTGCCCACA +
Preference number: 5 (lower is better)
Translates to: DPPSPEETASFFPSN*GSFLTEDKVSELPT
Trigger: TGTGGGCAATTCAGAAACTTTGTCCTCAGTCAAGAAGGACCCTCAGTTGCTTGGAAAGAAAGAGGCTGTCTCCTCAGGAGAAGGTGGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS TCA 90 bp AGACACTGTTTCTGCCATTCTCACCGATACAGACCCACCTTCTCCTaGGGAGACAGCCTCTTTCTTTCCAAGCAACTGAGGGTCCTTCTT +
Preference number: 5 (lower is better)
Translates to: RHCFCHSHRYRPTFS*GDSLFLSKQLRVLL
Trigger: AAGAAGGACCCTCAGTTGCTTGGAAAGAAAGAGGCTGTCTCCTCAGGAGAAGGTGGGTCTGTATCGGTGAGAATGGCAGAAACAGTGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 90 bp AAGACCCAGCATTGTCTCCTCCTGGGGACACTATATCCACTTTGCTaGAACATGGCATGTCTACTTTTCCCAAGGACCCAGAATTCTCCG +
Preference number: 5 (lower is better)
Translates to: KTQHCLLLGTLYPLC*NMACLLFPRTQNSP
Trigger: CGGAGAATTCTGGGTCCTTGGGAAAAGTAGACATGCCATGTTCCAGCAAAGTGGATATAGTGTCCCCAGGAGGAGACAATGCTGGGTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp GGTGGCCTTACATCAATCCTGGCACACGTGAAAGAACACTTAAAGATCTGCATGGATACAAGCTCTGTCTaGCCTGACGATCCTGGAGTT +
Preference number: 5 (lower is better)
Translates to: GGLTSILAHVKEHLKICMDTSSV*PDDPGV
Trigger: AACTCCAGGATCGTCAGGCAAGACAGAGCTTGTATC...CATGCAGATCTTTAAGTGTTCTTTCACGTGTGCCAGGATTGATGTAAGGCCACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 90 bp ACTGTTGGAAGATGTAGAATCTGTCTTTGCTGGAAACATACCTTCTaGCTGTCTGGCAGACACTGTTTCTGCCATTCTCACCGATACAGA +
Preference number: 5 (lower is better)
Translates to: TVGRCRICLCWKHTF*LSGRHCFCHSHRYR
Trigger: TCTGTATCGGTGAGAATGGCAGAAACAGTGTCTGCCAGACAGCCAGAAGGTATGTTTCCAGCAAAGACAGATTCTACATCTTCCAACAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS-3UTR CAA 90 bp CCTGGCACACGTGAAAGAACACTTAAAGATCTGCATGCAGTCTTTCCCCGTTTTGTTTTTGGATCCATTTaGCCTGAGGATATAGTCTCT +
Preference number: 5 (lower is better)
Translates to: PGTRERTLKDLHAVFPRFVFGSI*PEDIVS
Trigger: AGAGACTATATCCTCAGGCAAAATGGATCCAAAAAC...AAAACGGGGAAAGACTGCATGCAGATCTTTAAGTGTTCTTTCACGTGTGCCAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CAA 90 bp CGGCGCACACTCTGCAGCAGCGCGCGGAAGAGGCCCGGCGGGCGCTaGGCGGCGCCCTCCGCCGGTGCGGTGCGCACAGAGCCTGCACGG +
Preference number: 6 (lower is better)
Translates to: RRTLCSSARKRPGGR*AAPSAGAVRTEPAR
Trigger: CCGTGCAGGCTCTGTGCGCACCGCACCGGCGGAGGGCGCCGCCAAGCGCCCGCCGGGCCTCTTCCGCGCGCTGCTGCAGAGTGTGCGCCG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 72 bp CTCACCGCCACCGAGACGCAGGCCTGCGCGCCTGCCTaGGTGCCCGCGTCCTCGCGTGGCGGTGGCGCTCCG +
Preference number: 6 (lower is better)
Translates to: LTATETQACAPA*VPASSRGGGAP
Trigger: CGGAGCGCCACCGCCACGCGAGGACGCGGGCACCCAGGCAGGCGCGCAGGCCTGCGTCTCGGTGGCGGTGAG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 72 bp TCTGCAGCAGCGCGCGGAAGAGGCCCGGCGGGCGCTTaGCGGCGCCCTCCGCCGGTGCGGTGCGCACAGAGC +
Preference number: 6 (lower is better)
Translates to: SAAARGRGPAGA*RRPPPVRCAQS
Trigger: GCTCTGTGCGCACCGCACCGGCGGAGGGCGCCGCCAAGCGCCCGCCGGGCCTCTTCCGCGCGCTGCTGCAGA
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CAA 72 bp GCGGACGGCGGGCGGCGGCGCCGGCGCCGGCGCCCCTaGGCGGCCGTGCTCCTCGATCTGACGCTCCAAATG +
Preference number: 6 (lower is better)
Translates to: ADGGRRRRRRRP*AAVLLDLTLQM
Trigger: CATTTGGAGCGTCAGATCGAGGAGCACGGCCGCCAAGGGGCGCCGGCGCCGGCGCCGCCGCCCGCCGTCCGC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 72 bp GCCACCGAGCGTGTCTCGGCGGCTCCCAGCGACACCTaGAGGCCCGCGTCCCGGCGCGATGGTGGCCTGGGC +
Preference number: 6 (lower is better)
Translates to: ATERVSAAPSDT*RPASRRDGGLG
Trigger: GCCCAGGCCACCATCGCGCCGGGACGCGGGCCTGCAGGTGTCGCTGGGAGCCGCCGAGACACGCTCGGTGGC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 72 bp CGCGCCTGCCTGGGTGCCCGCGTCCTCGCGTGGCGGTaGCGCTCCGGCGTCCCACGACGGCGCCTTGGTGAA +
Preference number: 6 (lower is better)
Translates to: RACLGARVLAWR*RSGVPRRRLGE
Trigger: TTCACCAAGGCGCCGTCGTGGGACGCCGGAGCGCCACCGCCACGCGAGGACGCGGGCACCCAGGCAGGCGCG
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 72 bp CGGGCGGCGCTGCGGCCTGCGGAGTCATGGGCCCCGTaGCCACCGAGCGTGTCTCGGCGGCTCCCAGCGACA +
Preference number: 6 (lower is better)
Translates to: RAALRPAESWAP*PPSVSRRLPAT
Trigger: TGTCGCTGGGAGCCGCCGAGACACGCTCGGTGGCCACGGGGCCCATGACTCCGCAGGCCGCAGCGCCGCCCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 72 bp CTCCTGGGGCGCCAAGGCGGCCGCCAACACCGAGCCTaGCCGCACCCGCACCTCGGGGAAGACGGGCGGCAC +
Preference number: 6 (lower is better)
Translates to: LLGRQGGRQHRA*PHPHLGEDGRH
Trigger: GTGCCGCCCGTCTTCCCCGAGGTGCGGGTGCGGCCAGGCTCGGTGTTGGCGGCCGCCTTGGCGCCCCAGGAG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CAA 90 bp CGTGGCGGTGGCGCTCCGGCGTCCCACGACGGCGCCTTGGTGAAGTaGTCGCGAGTCCGTGGCCCTGGAGGGGGCGCCGCAGCCTCCGCG +
Preference number: 6 (lower is better)
Translates to: RGGGAPASHDGALVK*SRVRGPGGGAAASA
Trigger: CGCGGAGGCTGCGGCGCCCCCTCCAGGGCCACGGACTCGCGACAACTTCACCAAGGCGCCGTCGTGGGACGCCGGAGCGCCACCGCCACG
77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CAA 90 bp TGGGCCCGCGCGGACGGCGGGCGGCGGCGCCGGCGCCGGCGCCCCTaGGCGGCCGTGCTCCTCGATCTGACGCTCCAAATGCTTCTGGAT +
Preference number: 6 (lower is better)
Translates to: WARADGGRRRRRRRP*AAVLLDLTLQMLLD
Trigger: ATCCAGAAGCATTTGGAGCGTCAGATCGAGGAGCACGGCCGCCAAGGGGCGCCGGCGCCGGCGCCGCCGCCCGCCGTCCGCGCGGGCCCA
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CAA 90 bp GCGTCCTCGCGTGGCGGTGGCGCTCCGGCGTCCCACGACGGCGCCTaGGTGAAGTTGTCGCGAGTCCGTGGCCCTGGAGGGGGCGCCGCA +
Preference number: 6 (lower is better)
Translates to: ASSRGGGAPASHDGA*VKLSRVRGPGGGAA
Trigger: TGCGGCGCCCCCTCCAGGGCCACGGACTCGCGACAACTTCACCAAGGCGCCGTCGTGGGACGCCGGAGCGCCACCGCCACGCGAGGACGC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 72 bp GGAGACATGGGGCTCACCGCCACCGAGACGCAGGCCTaGGCGCCTGCCTGGGTGCCCGCGTCCTCGCGTGGC +
Preference number: 6 (lower is better)
Translates to: GDMGLTATETQA*APAWVPASSRG
Trigger: GCCACGCGAGGACGCGGGCACCCAGGCAGGCGCGCAGGCCTGCGTCTCGGTGGCGGTGAGCCCCATGTCTCC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 72 bp TCCCAGCTCACGTCGCGCACCGGCTCGGTCGCCTCCTaGGGCGCCAAGGCGGCCGCCAACACCGAGCCTGGC +
Preference number: 6 (lower is better)
Translates to: SQLTSRTGSVAS*GAKAAANTEPG
Trigger: GCCAGGCTCGGTGTTGGCGGCCGCCTTGGCGCCCCAGGAGGCGACCGAGCCGGTGCGCGACGTGAGCTGGGA
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS TCA 72 bp GCGGTGGCGCTCCGGCGTCCCACGACGGCGCCTTGGTaGAGTTGTCGCGAGTCCGTGGCCCTGGAGGGGGCG +
Preference number: 6 (lower is better)
Translates to: AVALRRPTTAPW*SCRESVALEGA
Trigger: CGCCCCCTCCAGGGCCACGGACTCGCGACAACTTCACCAAGGCGCCGTCGTGGGACGCCGGAGCGCCACCGC
75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 72 bp CCACGACGGCGCCTTGGTGAAGTTGTCGCGAGTCCGTaGCCCTGGAGGGGGCGCCGCAGCCTCCGCGCTGGG +
Preference number: 6 (lower is better)
Translates to: PRRRLGEVVASP*PWRGRRSLRAG
Trigger: CCCAGCGCGGAGGCTGCGGCGCCCCCTCCAGGGCCACGGACTCGCGACAACTTCACCAAGGCGCCGTCGTGG
75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CAA 72 bp GGCGCTCCGGCGTCCCACGACGGCGCCTTGGTGAAGTaGTCGCGAGTCCGTGGCCCTGGAGGGGGCGCCGCA +
Preference number: 6 (lower is better)
Translates to: GAPASHDGALVK*SRVRGPGGGAA
Trigger: TGCGGCGCCCCCTCCAGGGCCACGGACTCGCGACAACTTCACCAAGGCGCCGTCGTGGGACGCCGGAGCGCC
75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 72 bp GCCTGGAAGCTGAAGGCCGGGCCACCCGCGCCGTCCTaGGGAGACATGGGGCTCACCGCCACCGAGACGCAG +
Preference number: 6 (lower is better)
Translates to: AWKLKAGPPAPS*GDMGLTATETQ
Trigger: CTGCGTCTCGGTGGCGGTGAGCCCCATGTCTCCGCAGGACGGCGCGGGTGGCCCGGCCTTCAGCTTCCAGGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 72 bp CGGCGCCTTGGTGAAGTTGTCGCGAGTCCGTGGCCCTaGAGGGGGCGCCGCAGCCTCCGCGCTGGGGCTCTT +
Preference number: 6 (lower is better)
Translates to: RRLGEVVASPWP*RGRRSLRAGAL
Trigger: AAGAGCCCCAGCGCGGAGGCTGCGGCGCCCCCTCCAGGGCCACGGACTCGCGACAACTTCACCAAGGCGCCG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CAA 72 bp CGTGGCGGTGGCGCTCCGGCGTCCCACGACGGCGCCTaGGTGAAGTTGTCGCGAGTCCGTGGCCCTGGAGGG +
Preference number: 6 (lower is better)
Translates to: RGGGAPASHDGA*VKLSRVRGPGG
Trigger: CCCTCCAGGGCCACGGACTCGCGACAACTTCACCAAGGCGCCGTCGTGGGACGCCGGAGCGCCACCGCCACG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 72 bp GAGCCGCCGCTGCCGCTAGGTCTTTCTGGCTGGTGCTaGCAGAGGGCTCCCGCTCTGGCAGGGATCCGATGC +
Preference number: 6 (lower is better)
Translates to: EPPLPLGLSGWC*QRAPALAGIRC
Trigger: GCATCGGATCCCTGCCAGAGCGGGAGCCCTCTGCCAGCACCAGCCAGAAAGACCTAGCGGCAGCGGCGGCTC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 72 bp TCTGAGCCGCCGCTGCCGCTAGGTCTTTCTGGCTGGTaGTGGCAGAGGGCTCCCGCTCTGGCAGGGATCCGA +
Preference number: 6 (lower is better)
Translates to: SEPPLPLGLSGW*WQRAPALAGIR
Trigger: TCGGATCCCTGCCAGAGCGGGAGCCCTCTGCCAGCACCAGCCAGAAAGACCTAGCGGCAGCGGCGGCTCAGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 72 bp AGGCCCCTTCCGCAGCCCCACTGGAACTGGTGTGTCTaGGGTCCATGCCTAAACTCTGGTCCAGGGCGTGCC +
Preference number: 6 (lower is better)
Translates to: RPLPQPHWNWCV*GPCLNSGPGRA
Trigger: GGCACGCCCTGGACCAGAGTTTAGGCATGGACCCCAGACACACCAGTTCCAGTGGGGCTGCGGAAGGGGCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 72 bp CAGAGGGCTCCCGCTCTGGCAGGGATCCGATGCTCCTaGTATCTCTCTGGGGCTGGGCTGAGCTGTAGGGTG +
Preference number: 6 (lower is better)
Translates to: QRAPALAGIRCS*YLSGAGLSCRV
Trigger: CACCCTACAGCTCAGCCCAGCCCCAGAGAGATACCAGGAGCATCGGATCCCTGCCAGAGCGGGAGCCCTCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 72 bp CTGGAACTGGTGTGTCTGGGGTCCATGCCTAAACTCTaGTCCAGGGCGTGCCTTGGGGGTGCAGGGATGGCC +
Preference number: 6 (lower is better)
Translates to: LELVCLGSMPKL*SRACLGGAGMA
Trigger: GGCCATCCCTGCACCCCCAAGGCACGCCCTGGACCAGAGTTTAGGCATGGACCCCAGACACACCAGTTCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 72 bp TGTCTGGGGTCCATGCCTAAACTCTGGTCCAGGGCGTaGCTTGGGGGTGCAGGGATGGCCTTTGGAGAGGAG +
Preference number: 6 (lower is better)
Translates to: CLGSMPKLWSRA*LGGAGMAFGEE
Trigger: CTCCTCTCCAAAGGCCATCCCTGCACCCCCAAGGCACGCCCTGGACCAGAGTTTAGGCATGGACCCCAGACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS TCA 72 bp GCTGGGCTGAGCTGTAGGGTGTGCCATCTGATTGCCTaGGAGAGGACGTGGCCTTATCTGGGGCCTGAGGGA +
Preference number: 6 (lower is better)
Translates to: AGLSCRVCHLIA*ERTWPYLGPEG
Trigger: TCCCTCAGGCCCCAGATAAGGCCACGTCCTCTCTCAGGCAATCAGATGGCACACCCTACAGCTCAGCCCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 72 bp CCGTTTCTGCCTTTCCCTGGCTTGCAGAGCCTGCCTTaGTTGAAGCCAGGGGATCGGTCTTCTCTGAGGCTG +
Preference number: 6 (lower is better)
Translates to: PFLPFPGLQSLP*LKPGDRSSLRL
Trigger: CAGCCTCAGAGAAGACCGATCCCCTGGCTTCAAGCAAGGCAGGCTCTGCAAGCCAGGGAAAGGCAGAAACGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CAA 90 bp GGGAAACCGTTTCTGCCTTTCCCTGGCTTGCAGAGCCTGCCTTGCTaGAAGCCAGGGGATCGGTCTTCTCTGAGGCTGGGAGACTTGCCT +
Preference number: 6 (lower is better)
Translates to: GKPFLPFPGLQSLPC*KPGDRSSLRLGDLP
Trigger: AGGCAAGTCTCCCAGCCTCAGAGAAGACCGATCCCCTGGCTTCAAGCAAGGCAGGCTCTGCAAGCCAGGGAAAGGCAGAAACGGTTTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CAA 90 bp CCAGGGGAAACCGTTTCTGCCTTTCCCTGGCTTGCAGAGCCTGCCTaGCTTGAAGCCAGGGGATCGGTCTTCTCTGAGGCTGGGAGACTT +
Preference number: 6 (lower is better)
Translates to: PGETVSAFPWLAEPA*LEARGSVFSEAGRL
Trigger: AAGTCTCCCAGCCTCAGAGAAGACCGATCCCCTGGCTTCAAGCAAGGCAGGCTCTGCAAGCCAGGGAAAGGCAGAAACGGTTTCCCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 72 bp GGACCCAGCCTCTTCCTTTCGTGTGGAAGTGGAGTCTaGCTGCTTCAGGGAGTTGCCATCCATCTTCCCCGA +
Preference number: 6 (lower is better)
Translates to: GPSLFLSCGSGV*LLQGVAIHLPR
Trigger: TCGGGGAAGATGGATGGCAACTCCCTGAAGCAGGCAGACTCCACTTCCACACGAAAGGAAGAGGCTGGGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 72 bp TTGCAGCAGACAGGGACCCCCAAGTCCCCAGAGACCTaGTATCTCCTGAACTCGAAGACCCGAGGTCTGTCT +
Preference number: 6 (lower is better)
Translates to: LQQTGTPKSPET*YLLNSKTRGLS
Trigger: AGACAGACCTCGGGTCTTCGAGTTCAGGAGATACCAGGTCTCTGGGGACTTGGGGGTCCCTGTCTGCTGCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 72 bp TCCACTTCTCCAGGGGAAACCGTTTCTGCCTTTCCCTaGCTTGCAGAGCCTGCCTTGCTTGAAGCCAGGGGA +
Preference number: 6 (lower is better)
Translates to: STSPGETVSAFP*LAEPALLEARG
Trigger: TCCCCTGGCTTCAAGCAAGGCAGGCTCTGCAAGCCAGGGAAAGGCAGAAACGGTTTCCCCTGGAGAAGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CAA 72 bp TTTCTGCCTTTCCCTGGCTTGCAGAGCCTGCCTTGCTaGAAGCCAGGGGATCGGTCTTCTCTGAGGCTGGGA +
Preference number: 6 (lower is better)
Translates to: FLPFPGLQSLPC*KPGDRSSLRLG
Trigger: TCCCAGCCTCAGAGAAGACCGATCCCCTGGCTTCAAGCAAGGCAGGCTCTGCAAGCCAGGGAAAGGCAGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CAA 72 bp ACCGTTTCTGCCTTTCCCTGGCTTGCAGAGCCTGCCTaGCTTGAAGCCAGGGGATCGGTCTTCTCTGAGGCT +
Preference number: 6 (lower is better)
Translates to: TVSAFPWLAEPA*LEARGSVFSEA
Trigger: AGCCTCAGAGAAGACCGATCCCCTGGCTTCAAGCAAGGCAGGCTCTGCAAGCCAGGGAAAGGCAGAAACGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CAA 90 bp GCTGAGGACATGGGCTCTGGCTTCCCAAACAAAGTCGTTCCAGAGTaGTCTGAGGTCAAGGCTCCATGTGCCCTCGGTGTCTCTGGGAGA +
Preference number: 6 (lower is better)
Translates to: AEDMGSGFPNKVVPE*SEVKAPCALGVSGR
Trigger: TCTCCCAGAGACACCGAGGGCACATGGAGCCTTGACCTCAGACAACTCTGGAACGACTTTGTTTGGGAAGCCAGAGCCCATGTCCTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS TCA 72 bp GTCTACTTTTCCCAAGGACCCAGAATTCTCCGCCCCTaGAGCTGTGCAGTCCACTCTTCCTACCGTCCCAGG +
Preference number: 6 (lower is better)
Translates to: VYFSQGPRILRP*SCAVHSSYRPR
Trigger: CCTGGGACGGTAGGAAGAGTGGACTGCACAGCTTCAGGGGCGGAGAATTCTGGGTCCTTGGGAAAAGTAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS TCA 72 bp GTCCACCCGTGTGGAGTTAACAGGATTCCCTTTCTCTaGAGCCTGCAGCTCTGGGATGCCTTCTGCTCTTTC +
Preference number: 6 (lower is better)
Translates to: VHPCGVNRIPFL*SLQLWDAFCSF
Trigger: GAAAGAGCAGAAGGCATCCCAGAGCTGCAGGCTTCAGAGAAAGGGAATCCTGTTAACTCCACACGGGTGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 72 bp GGCCTGAGGGACAGTCTTGGCGGAAGTCTGAGACTCTaGTTTTCTAGGAGATGGAGATGCAGAGTCAGCCTT +
Preference number: 6 (lower is better)
Translates to: GLRDSLGGSLRL*FSRRWRCRVSL
Trigger: AAGGCTGACTCTGCATCTCCATCTCCTAGAAAAGCAGAGTCTCAGACTTCCGCCAAGACTGTCCCTCAGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CAA 90 bp GCCTCTTCCTTTCGTGTGGAAGTGGAGTCTGCCTGCTTCAGGGAGTaGCCATCCATCTTCCCCGAGAACACAGGATTTCTGATCTCTGAG +
Preference number: 6 (lower is better)
Translates to: ASSFRVEVESACFRE*PSIFPENTGFLISE
Trigger: CTCAGAGATCAGAAATCCTGTGTTCTCGGGGAAGATGGATGGCAACTCCCTGAAGCAGGCAGACTCCACTTCCACACGAAAGGAAGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CAA 90 bp TTTTCTGGAGGGATCTGTCTTCTCAGACAGTTGTGGCTGCTCCTTTaGCAAAGACGGAGTTTCCACCTTTCCCGGGGATGTGGCACCTGG +
Preference number: 6 (lower is better)
Translates to: FSGGICLLRQLWLLL*QRRSFHLSRGCGTW
Trigger: CCAGGTGCCACATCCCCGGGAAAGGTGGAAACTCCGTCTTTGCAAAAGGAGCAGCCACAACTGTCTGAGAAGACAGATCCCTCCAGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 72 bp CGTGTGGAGTTAACAGGATTCCCTTTCTCTGAAGCCTaGAGCTCTGGGATGCCTTCTGCTCTTTCTGAGGTC +
Preference number: 6 (lower is better)
Translates to: RVELTGFPFSEA*SSGMPSALSEV
Trigger: GACCTCAGAAAGAGCAGAAGGCATCCCAGAGCTGCAGGCTTCAGAGAAAGGGAATCCTGTTAACTCCACACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 72 bp GGATCTGTCTTCTCAGACAGTTGTGGCTGCTCCTTTTaGAAAGACGGAGTTTCCACCTTTCCCGGGGATGTG +
Preference number: 6 (lower is better)
Translates to: GSVFSDSCGCSF*KDGVSTFPGDV
Trigger: CACATCCCCGGGAAAGGTGGAAACTCCGTCTTTGCAAAAGGAGCAGCCACAACTGTCTGAGAAGACAGATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CAA 72 bp GGGATCTGTCTTCTCAGACAGTTGTGGCTGCTCCTTTaGCAAAGACGGAGTTTCCACCTTTCCCGGGGATGT +
Preference number: 6 (lower is better)
Translates to: GICLLRQLWLLL*QRRSFHLSRGC
Trigger: ACATCCCCGGGAAAGGTGGAAACTCCGTCTTTGCAAAAGGAGCAGCCACAACTGTCTGAGAAGACAGATCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 72 bp CGTCCCAGGCTCCCCCTTTCCATAGATCATAGGCTCTaGCTTTCCCTTCAACATGGACTCTTCATTCCTCAA +
Preference number: 6 (lower is better)
Translates to: RPRLPLSIDHRL*LSLQHGLFIPQ
Trigger: TTGAGGAATGAAGAGTCCATGTTGAAGGGAAAGGCAGAGCCTATGATCTATGGAAAGGGGGAGCCTGGGACG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 72 bp AATGTTTCTGTTTTTACCAAGGACACGCGTTCTGCCTaGCCAGAGGACAAGCGTTCTGGTTTCACTGGGGAC +
Preference number: 6 (lower is better)
Translates to: NVSVFTKDTRSA*PEDKRSGFTGD
Trigger: GTCCCCAGTGAAACCAGAACGCTTGTCCTCTGGGCAGGCAGAACGCGTGTCCTTGGTAAAAACAGAAACATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 72 bp CCCTCTCCTGTGGATCCAGGGCGCTCTCTTCTGGAATaGATGACATTCTCTGTTTTTGGATCCATTTTGCCT +
Preference number: 6 (lower is better)
Translates to: PSPVDPGRSLLE*MTFSVFGSILP
Trigger: AGGCAAAATGGATCCAAAAACAGAGAATGTCATGCATTCCAGAAGAGAGCGCCCTGGATCCACAGGAGAGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 72 bp TTTCTGGAGGGATCTGTCTTCTCAGACAGTTGTGGCTaGTCCTTTTGCAAAGACGGAGTTTCCACCTTTCCC +
Preference number: 6 (lower is better)
Translates to: FLEGSVFSDSCG*SFCKDGVSTFP
Trigger: GGGAAAGGTGGAAACTCCGTCTTTGCAAAAGGAGCAGCCACAACTGTCTGAGAAGACAGATCCCTCCAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 72 bp CATTGTCTCCTCCTGGGGACACTATATCCACTTTGCTaGAACATGGCATGTCTACTTTTCCCAAGGACCCAG +
Preference number: 6 (lower is better)
Translates to: HCLLLGTLYPLC*NMACLLFPRTQ
Trigger: CTGGGTCCTTGGGAAAAGTAGACATGCCATGTTCCAGCAAAGTGGATATAGTGTCCCCAGGAGGAGACAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CAA 72 bp GTCGACTTTTCTGGAGGGATCTGTCTTCTCAGACAGTaGTGGCTGCTCCTTTTGCAAAGACGGAGTTTCCAC +
Preference number: 6 (lower is better)
Translates to: VDFSGGICLLRQ*WLLLLQRRSFH
Trigger: GTGGAAACTCCGTCTTTGCAAAAGGAGCAGCCACAACTGTCTGAGAAGACAGATCCCTCCAGAAAAGTCGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 72 bp TCCTCCTGGGGACACTATATCCACTTTGCTGGAACATaGCATGTCTACTTTTCCCAAGGACCCAGAATTCTC +
Preference number: 6 (lower is better)
Translates to: SSWGHYIHFAGT*HVYFSQGPRIL
Trigger: GAGAATTCTGGGTCCTTGGGAAAAGTAGACATGCCATGTTCCAGCAAAGTGGATATAGTGTCCCCAGGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CAA 90 bp CTTAAAGACCCAGCATTGTCTCCTCCTGGGGACACTATATCCACTTaGCTGGAACATGGCATGTCTACTTTTCCCAAGGACCCAGAATTC +
Preference number: 6 (lower is better)
Translates to: LKDPALSPPGDTIST*LEHGMSTFPKDPEF
Trigger: GAATTCTGGGTCCTTGGGAAAAGTAGACATGCCATGTTCCAGCAAAGTGGATATAGTGTCCCCAGGAGGAGACAATGCTGGGTCTTTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS TCA 72 bp TCTCCTGAGGAGACAGCCTCTTTCTTTCCAAGCAACTaGGGGTCCTTCTTGACTGAGGACAAAGTTTCTGAA +
Preference number: 6 (lower is better)
Translates to: SPEETASFFPSN*GSFLTEDKVSE
Trigger: TTCAGAAACTTTGTCCTCAGTCAAGAAGGACCCTCAGTTGCTTGGAAAGAAAGAGGCTGTCTCCTCAGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS GCA 72 bp AGGTCCTGTACTGTTGGAAGATGTAGAATCTGTCTTTaGTGGAAACATACCTTCTGGCTGTCTGGCAGACAC +
Preference number: 6 (lower is better)
Translates to: RSCTVGRCRICL*WKHTFWLSGRH
Trigger: GTGTCTGCCAGACAGCCAGAAGGTATGTTTCCAGCAAAGACAGATTCTACATCTTCCAACAGTACAGGACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CAA 72 bp GAAACAGGGTCCGCTCTGCCTGAAGGTCCTGTACTGTaGGAAGATGTAGAATCTGTCTTTGCTGGAAACATA +
Preference number: 6 (lower is better)
Translates to: ETGSALPEGPVL*EDVESVFAGNI
Trigger: TATGTTTCCAGCAAAGACAGATTCTACATCTTCCAACAGTACAGGACCTTCAGGCAGAGCGGACCCTGTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2
CDS CCA 72 bp TCCTGTACTGTTGGAAGATGTAGAATCTGTCTTTGCTaGAAACATACCTTCTGGCTGTCTGGCAGACACTGT +
Preference number: 6 (lower is better)
Translates to: SCTVGRCRICLC*KHTFWLSGRHC
Trigger: ACAGTGTCTGCCAGACAGCCAGAAGGTATGTTTCCAGCAAAGACAGATTCTACATCTTCCAACAGTACAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099506.2
ENSMUST00000135343.2