RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GPR183 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051212

Ensembl transcript IDs: ENSMUST00000049872.9, ENSMUST00000227267.2

Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCCCTGTCGTGTTTCCGAGCAGTGGTCCAAAGGCACTATCCTGGGTaGTCAGGGAAGGGCTTGATGCTTCTGTCACCTCTGTCATCACCA +
Preference number: 1 (lower is better)
Translates to: PLSCFRAVVQRHYPG*SGKGLMLLSPLSSP
Trigger: TGGTGATGACAGAGGTGACAGAAGCATCAAGCCCTTCCCTGAGCACCCAGGATAGTGCCTTTGGACCACTGCTCGGAAACACGACAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR GCA 90 bp CTGAGTTACTTACGCAAGCATGGCAGTTATAATTGTAATCCCCATTaGTCCAGTTCTCATAGCCTACTCTACCACTGTGTAGATACCAGG +
Preference number: 1 (lower is better)
Translates to: LSYLRKHGSYNCNPH*SSSHSLLYHCVDTR
Trigger: CCTGGTATCTACACAGTGGTAGAGTAGGCTATGAGAACTGGAGCAATGGGGATTACAATTATAACTGCCATGCTTGCGTAAGTAACTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR-3UTR CCA 90 bp CCGAGCAGTGGTCCAAAGGCACTATCCTGGGTGCTCAGGGAAGGGCTTGATGCTCCGGTGGGGCGGCAGTaGAAGGCATCCTGGTTGGGA +
Preference number: 2 (lower is better)
Translates to: PSSGPKALSWVLREGLDAPVGRQ*KASWLG
Trigger: TCCCAACCAGGATGCCTTCCACTGCCGCCCCACCGG...AGCATCAAGCCCTTCCCTGAGCACCCAGGATAGTGCCTTTGGACCACTGCTCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR-3UTR CCA 90 bp AGCAGTGGTCCAAAGGCACTATCCTGGGTGCTCAGGGAAGGGCTTGATGCTTCTCAGTGGAAGGCATCCTaGTTGGGAGCCGACCAGTCG +
Preference number: 2 (lower is better)
Translates to: SSGPKALSWVLREGLDASQWKAS*LGADQS
Trigger: CGACTGGTCGGCTCCCAACCAGGATGCCTTCCACTG...AGAAGCATCAAGCCCTTCCCTGAGCACCCAGGATAGTGCCTTTGGACCACTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR-3UTR GCA 90 bp AGCAGTGGTCCAAAGGCACTATCCTGGGTGCTCAGGGAAGGGCTTGATGCTTCTTCCCGCAGCTTGCTGTaGTGTGAAGTCCCAAGTGCC +
Preference number: 2 (lower is better)
Translates to: SSGPKALSWVLREGLDASSRSLL*CEVPSA
Trigger: GGCACTTGGGACTTCACAGCACAGCAAGCTGCGGGA...AGAAGCATCAAGCCCTTCCCTGAGCACCCAGGATAGTGCCTTTGGACCACTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR CAA 90 bp ATCTGTAACTCTAGTCCCAGGGGATCTGACACCCTCTTCTGGCTTTaGCAGGCACTGCTCACATGTGGTACACTGACTTGTATGCAGGCA +
Preference number: 2 (lower is better)
Translates to: ICNSSPRGSDTLFWL*QALLTCGTLTCMQA
Trigger: TGCCTGCATACAAGTCAGTGTACCACATGTGAGCAGTGCCTGCAAAAGCCAGAAGAGGGTGTCAGATCCCCTGGGACTAGAGTTACAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR-3UTR CCA 90 bp CTGTCACCTCTGTCATCACCAGCATTTCTACCGTTGTTCTTCAAATATACCTTCGGAAGGCATCCTGGTTaGGAGCCGACCAGTCGGTGG +
Preference number: 2 (lower is better)
Translates to: LSPLSSPAFLPLFFKYTFGRHPG*EPTSRW
Trigger: CCACCGACTGGTCGGCTCCCAACCAGGATGCCTTCC...GAAGGTATATTTGAAGAACAACGGTAGAAATGCTGGTGATGACAGAGGTGACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR-3UTR TCA 90 bp ACCAGGCACTACCAGCTGAACAGAAGTCCCAAAGCATGTATGCATGTTTTCTATGCTCAGGGAAGGGCTTaGTGCTTCTGTCACCTCTGT +
Preference number: 2 (lower is better)
Translates to: TRHYQLNRSPKACMHVFYAQGRA*CFCHLC
Trigger: ACAGAGGTGACAGAAGCATCAAGCCCTTCCCTGAGC...ATAGAAAACATGCATACATGCTTTGGGACTTCTGTTCAGCTGGTAGTGCCTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR-3UTR GCA 90 bp CTAAGGCTAGTCTGTCTACATAGAGACTTCCAGGCCTGCAAGACTGACATAGCTAAGGAAGGTAGCACGTaGACATGTTTTCAGTGGATG +
Preference number: 2 (lower is better)
Translates to: LRLVCLHRDFQACKTDIAKEGST*TCFQWM
Trigger: CATCCACTGAAAACATGTGCACGTGCTACCTTCCTT...AGCTATGTCAGTCTTGCAGGCCTGGAAGTCTCTATGTAGACAGACTAGCCTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR-3UTR CCA 90 bp CCTTCCCTATTATATAAATTGATATCATTGCCAAGTGAGATACTGTACTGGAGACCAAAGGCACTATCCTaGGTGCTCAGGGAAGGGCTT +
Preference number: 2 (lower is better)
Translates to: PSLLYKLISLPSEILYWRPKALS*VLREGL
Trigger: AAGCCCTTCCCTGAGCACCCAGGATAGTGCCTTTGG...TCTCCAGTACAGTATCTCACTTGGCAATGATATCAATTTATATAATAGGGAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR-3UTR GCA 90 bp TTTGATTTTCAGCACCTCCGTAATGACACACAATCATCTGTAACTCTAGTCCCAGTCCCAAAGCATGTATaGATGTTTTCTATTCCAGAA +
Preference number: 2 (lower is better)
Translates to: FDFQHLRNDTQSSVTLVPVPKHV*MFSIPE
Trigger: TTCTGGAATAGAAAACATGCATACATGCTTTGGGAC...TGGGACTAGAGTTACAGATGATTGTGTGTCATTACGGAGGTGCTGAAAATCAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR-3UTR CCA 90 bp CCTTCCCTATTATATAAATTGATATCATTGCCAAGTGAGATACTGTACTGGAGATTAGAGAAGGTACAGTaGTTAAAAGCACTAGCTGCT +
Preference number: 2 (lower is better)
Translates to: PSLLYKLISLPSEILYWRLEKVQ*LKALAA
Trigger: AGCAGCTAGTGCTTTTAACCACTGTACCTTCTCTAA...TCTCCAGTACAGTATCTCACTTGGCAATGATATCAATTTATATAATAGGGAAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR-3UTR GCA 90 bp CCTTCCCTATTATATAAATTGATATCATTGCCAAGTGAGATACTGTACTGGAGAAAATTGTTCATTAACTaGCTGAGTTACTTACGCAAG +
Preference number: 2 (lower is better)
Translates to: PSLLYKLISLPSEILYWRKLFIN*LSYLRK
Trigger: CTTGCGTAAGTAACTCAGGCAGTTAATGAACAATTT...TCTCCAGTACAGTATCTCACTTGGCAATGATATCAATTTATATAATAGGGAAGG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR CCA 72 bp ATTGGCCGGTGGGGCGGCAGTGGAAGGCATCCTGGTTaGGAGCCGACCAGTCGGTGGGCGGGGCCCATCCCG +
Preference number: 3 (lower is better)
Translates to: IGRWGGSGRHPG*EPTSRWAGPIP
Trigger: CGGGATGGGCCCCGCCCACCGACTGGTCGGCTCCCAACCAGGATGCCTTCCACTGCCGCCCCACCGGCCAAT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR CCA 72 bp ATGCTGTGTGGGAGCCCCTGTCGTGTTTCCGAGCAGTaGTCCAAAGGCACTATCCTGGGTGCTCAGGGAAGG +
Preference number: 3 (lower is better)
Translates to: MLCGSPCRVSEQ*SKGTILGAQGR
Trigger: CCTTCCCTGAGCACCCAGGATAGTGCCTTTGGACCACTGCTCGGAAACACGACAGGGGCTCCCACACAGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR CCA 72 bp TGTAACTCTAGTCCCAGGGGATCTGACACCCTCTTCTaGCTTTTGCAGGCACTGCTCACATGTGGTACACTG +
Preference number: 3 (lower is better)
Translates to: CNSSPRGSDTLF*LLQALLTCGTL
Trigger: CAGTGTACCACATGTGAGCAGTGCCTGCAAAAGCCAGAAGAGGGTGTCAGATCCCCTGGGACTAGAGTTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR GCA 72 bp ATGCATGTTTTCTATTCCAGAAAGGAAGGTAGCACGTaGACATGTTTTCAGTGGATGCTGTGTGGGAGCCCC +
Preference number: 3 (lower is better)
Translates to: MHVFYSRKEGST*TCFQWMLCGSP
Trigger: GGGGCTCCCACACAGCATCCACTGAAAACATGTGCACGTGCTACCTTCCTTTCTGGAATAGAAAACATGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR CCA 72 bp CACCCTCTTCTGGCTTTTGCAGGCACTGCTCACATGTaGTACACTGACTTGTATGCAGGCAAACATACAAAA +
Preference number: 3 (lower is better)
Translates to: HPLLAFAGTAHM*YTDLYAGKHTK
Trigger: TTTTGTATGTTTGCCTGCATACAAGTCAGTGTACCACATGTGAGCAGTGCCTGCAAAAGCCAGAAGAGGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR TCA 72 bp TCTGGCTTTTGCAGGCACTGCTCACATGTGGTACACTaGCTTGTATGCAGGCAAACATACAAAAAGGAAAAA +
Preference number: 3 (lower is better)
Translates to: SGFCRHCSHVVH*LVCRQTYKKEK
Trigger: TTTTTCCTTTTTGTATGTTTGCCTGCATACAAGTCAGTGTACCACATGTGAGCAGTGCCTGCAAAAGCCAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR GCA 72 bp TTACGCAAGCATGGCAGTTATAATTGTAATCCCCATTaGTCCAGTTCTCATAGCCTACTCTACCACTGTGTA +
Preference number: 3 (lower is better)
Translates to: LRKHGSYNCNPH*SSSHSLLYHCV
Trigger: TACACAGTGGTAGAGTAGGCTATGAGAACTGGAGCAATGGGGATTACAATTATAACTGCCATGCTTGCGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR-3UTR CAA 90 bp CCTTCCCTATTATATAAATTGATATCATTGCCAAGTGAGATACTGTACTGGAGAACCCTCTTCTGGCTTTaGCAGGCACTGCTCACATGT +
Preference number: 3 (lower is better)
Translates to: PSLLYKLISLPSEILYWRTLFWL*QALLTC
Trigger: ACATGTGAGCAGTGCCTGCAAAAGCCAGAAGAGGGT...TCTCCAGTACAGTATCTCACTTGGCAATGATATCAATTTATATAATAGGGAAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR-3UTR CAA 90 bp TTTGATTTTCAGCACCTCCGTAATGACACACAATCATCTGTAACTCTAGTCCCACCAGCATTTCTACCGTaGTTCTTCAAATATACCTTC +
Preference number: 3 (lower is better)
Translates to: FDFQHLRNDTQSSVTLVPPAFLP*FFKYTF
Trigger: GAAGGTATATTTGAAGAACAACGGTAGAAATGCTGG...TGGGACTAGAGTTACAGATGATTGTGTGTCATTACGGAGGTGCTGAAAATCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR GCA 90 bp CCGAGCAGTGGTCCAAAGGCACTATCCTGGGTGCTCAGGGAAGGGCTTGATGCTTCGGTGAGTGGGTTCTaGTTGGCAGTCCTGAAGAGT +
Preference number: 4 (lower is better)
Translates to: PSSGPKALSWVLREGLDASVSGF*LAVLKS
Trigger: ACTCTTCAGGACTGCCAAGCAGAACCCACTCACCGA...AGCATCAAGCCCTTCCCTGAGCACCCAGGATAGTGCCTTTGGACCACTGCTCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR TCA 90 bp CGAGCAGTGGTCCAAAGGCACTATCCTGGGTGCTCAGGGAAGGGCTTGATGCTTAGCAGCGGCAGTGTTTaGGCAAAGACCAGAATCCAG +
Preference number: 4 (lower is better)
Translates to: RAVVQRHYPGCSGKGLMLSSGSV*AKTRIQ
Trigger: CTGGATTCTGGTCTTTGCTCAAACACTGCCGCTGCT...AAGCATCAAGCCCTTCCCTGAGCACCCAGGATAGTGCCTTTGGACCACTGCTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR CCA 90 bp CCGAGCAGTGGTCCAAAGGCACTATCCTGGGTGCTCAGGGAAGGGCTTGATGCTTTCCATTGGAGGCCTTaGAGTGGATCATCATCTGAG +
Preference number: 4 (lower is better)
Translates to: PSSGPKALSWVLREGLDAFHWRP*SGSSSE
Trigger: CTCAGATGATGATCCACTCCAAGGCCTCCAATGGAA...AGCATCAAGCCCTTCCCTGAGCACCCAGGATAGTGCCTTTGGACCACTGCTCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR TCA 90 bp AGCAGTGGTCCAAAGGCACTATCCTGGGTGCTCAGGGAAGGGCTTGATGCTTCTGAGTGGATCATCATCTaGGACTCTGTCATTTCCCGC +
Preference number: 4 (lower is better)
Translates to: SSGPKALSWVLREGLDASEWIII*DSVISR
Trigger: GCGGGAAATGACAGAGTCTCAGATGATGATCCACTC...AGAAGCATCAAGCCCTTCCCTGAGCACCCAGGATAGTGCCTTTGGACCACTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR CAA 72 bp GTCCAAAGGCACTATCCTGGGTGCTCAGGGAAGGGCTaGATGCTTCTGTCACCTCTGTCATCACCAGCATTT +
Preference number: 4 (lower is better)
Translates to: VQRHYPGCSGKG*MLLSPLSSPAF
Trigger: AAATGCTGGTGATGACAGAGGTGACAGAAGCATCAAGCCCTTCCCTGAGCACCCAGGATAGTGCCTTTGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR CAA 72 bp TCTAGTCCCAGGGGATCTGACACCCTCTTCTGGCTTTaGCAGGCACTGCTCACATGTGGTACACTGACTTGT +
Preference number: 4 (lower is better)
Translates to: SSPRGSDTLFWL*QALLTCGTLTC
Trigger: ACAAGTCAGTGTACCACATGTGAGCAGTGCCTGCAAAAGCCAGAAGAGGGTGTCAGATCCCCTGGGACTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR TCA 90 bp TATGCCAGTCTAAGGCTAGTCTGTCTACATAGAGACTTCCAGGCCTGCAAGACTGGTCCATGCAGCAGTTaGAGTTCATCAGGCACACCG +
Preference number: 4 (lower is better)
Translates to: YASLRLVCLHRDFQACKTGPCSS*SSSGTP
Trigger: CGGTGTGCCTGATGAACTTCAACTGCTGCATGGACC...AGTCTTGCAGGCCTGGAAGTCTCTATGTAGACAGACTAGCCTTAGACTGGCATA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR CCA 90 bp CGAGCAGTGGTCCAAAGGCACTATCCTGGGTGCTCAGGGAAGGGCTTGATGCTTTGTCCCTTCAAAGTTTaGATACTCCATGCAAGTGGT +
Preference number: 4 (lower is better)
Translates to: RAVVQRHYPGCSGKGLMLCPFKV*ILHASG
Trigger: ACCACTTGCATGGAGTATCCAAACTTTGAAGGGACA...AAGCATCAAGCCCTTCCCTGAGCACCCAGGATAGTGCCTTTGGACCACTGCTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR GCA 90 bp TATGCCAGTCTAAGGCTAGTCTGTCTACATAGAGACTTCCAGGCCTGCAAGACTTTAATACCCTGGCTGTaGTGTGGTGGGCATAGAGAT +
Preference number: 4 (lower is better)
Translates to: YASLRLVCLHRDFQACKTLIPWL*CGGHRD
Trigger: ATCTCTATGCCCACCACAGCACAGCCAGGGTATTAA...AGTCTTGCAGGCCTGGAAGTCTCTATGTAGACAGACTAGCCTTAGACTGGCATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR TCA 90 bp CTAAGGCTAGTCTGTCTACATAGAGACTTCCAGGCCTGCAAGACTGACATAGCTATGCAAAGAAGTATATaGACGGGTCCATGCAGCAGT +
Preference number: 4 (lower is better)
Translates to: LRLVCLHRDFQACKTDIAMQRSI*TGPCSS
Trigger: ACTGCTGCATGGACCCGTTCATATACTTCTTTGCAT...AGCTATGTCAGTCTTGCAGGCCTGGAAGTCTCTATGTAGACAGACTAGCCTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR GCA 90 bp ACCAGGCACTACCAGCTGAACAGAAGTCCCAAAGCATGTATGCATGTTTTCTATAGGCACACCGTGAAGTaGAGAGAGATCTGGAAGGAA +
Preference number: 4 (lower is better)
Translates to: TRHYQLNRSPKACMHVFYRHTVK*REIWKE
Trigger: TTCCTTCCAGATCTCTCTGCACTTCACGGTGTGCCT...ATAGAAAACATGCATACATGCTTTGGGACTTCTGTTCAGCTGGTAGTGCCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR GCA 90 bp CTAAGGCTAGTCTGTCTACATAGAGACTTCCAGGCCTGCAAGACTGACATAGCTCATGAAGTTCACACCTaGGTACGTGTTGATGTAGAA +
Preference number: 4 (lower is better)
Translates to: LRLVCLHRDFQACKTDIAHEVHT*VRVDVE
Trigger: TTCTACATCAACACGTACGCAGGTGTGAACTTCATG...AGCTATGTCAGTCTTGCAGGCCTGGAAGTCTCTATGTAGACAGACTAGCCTTAG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR CCA 90 bp TGCATGTTTTCTATTCCAGAAAGGAAGGTAGCACGTGCACATGTTTTCAGTGGAGATACTCCATGCAAGTaGTCTTGTCTCCCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: CMFSIPERKVARAHVFSGDTPCK*SCLPPP
Trigger: AGGAGGAGGGAGACAAGACCACTTGCATGGAGTATC...TCCACTGAAAACATGTGCACGTGCTACCTTCCTTTCTGGAATAGAAAACATGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR TCA 90 bp TTTGATTTTCAGCACCTCCGTAATGACACACAATCATCTGTAACTCTAGTCCCATGCTCAAGCAAGTCATaGAGTTCACACCTGCGTACG +
Preference number: 4 (lower is better)
Translates to: FDFQHLRNDTQSSVTLVPCSSKS*SSHLRT
Trigger: CGTACGCAGGTGTGAACTTCATGACTTGCTTGAGCA...TGGGACTAGAGTTACAGATGATTGTGTGTCATTACGGAGGTGCTGAAAATCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR CAA 72 bp TTAAAAGCACTAGCTGCTCTTCCGGAGGATCCGTGTTaGATTTTCAGCACCTCCGTAATGACACACAATCAT +
Preference number: 4 (lower is better)
Translates to: LKALAALPEDPC*IFSTSVMTHNH
Trigger: ATGATTGTGTGTCATTACGGAGGTGCTGAAAATCAAACACGGATCCTCCGGAAGAGCAGCTAGTGCTTTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR TCA 90 bp CTAAGGCTAGTCTGTCTACATAGAGACTTCCAGGCCTGCAAGACTGACATAGCTACAGGATGTCAGAAATaGCCAAGTTCATTGAATAGA +
Preference number: 4 (lower is better)
Translates to: LRLVCLHRDFQACKTDIATGCQK*PSSLNR
Trigger: TCTATTCAATGAACTTGGTCATTTCTGACATCCTGT...AGCTATGTCAGTCTTGCAGGCCTGGAAGTCTCTATGTAGACAGACTAGCCTTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR GCA 90 bp TGCATGTTTTCTATTCCAGAAAGGAAGGTAGCACGTGCACATGTTTTCAGTGGAAGTTTGGATACTCCATaGAAGTGGTCTTGTCTCCCT +
Preference number: 4 (lower is better)
Translates to: CMFSIPERKVARAHVFSGSLDTP*KWSCLP
Trigger: AGGGAGACAAGACCACTTGCATGGAGTATCCAAACT...TCCACTGAAAACATGTGCACGTGCTACCTTCCTTTCTGGAATAGAAAACATGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR CCA 90 bp TTTGATTTTCAGCACCTCCGTAATGACACACAATCATCTGTAACTCTAGTCCCAATGAGACGTTGCCAGTaGGGTAGTGAAATTGTTAGC +
Preference number: 4 (lower is better)
Translates to: FDFQHLRNDTQSSVTLVPMRRCQ*GSEIVS
Trigger: GCTAACAATTTCACTACCCCACTGGCAACGTCTCAT...TGGGACTAGAGTTACAGATGATTGTGTGTCATTACGGAGGTGCTGAAAATCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR CCA 90 bp CCTTCCCTATTATATAAATTGATATCATTGCCAAGTGAGATACTGTACTGGAGAGAGGCATTAATACCCTaGCTGTGCTGTGGTGGGCAT +
Preference number: 4 (lower is better)
Translates to: PSLLYKLISLPSEILYWREALIP*LCCGGH
Trigger: ATGCCCACCACAGCACAGCCAGGGTATTAATGCCTC...TCTCCAGTACAGTATCTCACTTGGCAATGATATCAATTTATATAATAGGGAAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR TCA 90 bp CCTTCCCTATTATATAAATTGATATCATTGCCAAGTGAGATACTGTACTGGAGATCTGCTTGGCAGTCCTaGAGAGTTTGCAGCAGATCT +
Preference number: 4 (lower is better)
Translates to: PSLLYKLISLPSEILYWRSAWQS*RVCSRS
Trigger: AGATCTGCTGCAAACTCTTCAGGACTGCCAAGCAGA...TCTCCAGTACAGTATCTCACTTGGCAATGATATCAATTTATATAATAGGGAAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR TCA 90 bp CCTTCCCTATTATATAAATTGATATCATTGCCAAGTGAGATACTGTACTGGAGATTCTGTTTTGAACAATaGCAACCAAGGCCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: PSLLYKLISLPSEILYWRFCFEQ*QPRPAG
Trigger: ACCTGCTGGCCTTGGTTGTCATTGTTCAAAACAGAA...TCTCCAGTACAGTATCTCACTTGGCAATGATATCAATTTATATAATAGGGAAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR CAA 72 bp GAACTTAGGAAGACCATGCTGCACACATTAAAGTATTaGTATAAGCAGGTGTGTAACATTACAGAGAATCGC +
Preference number: 4 (lower is better)
Translates to: ELRKTMLHTLKY*YKQVCNITENR
Trigger: GCGATTCTCTGTAATGTTACACACCTGCTTATACAAATACTTTAATGTGTGCAGCATGGTCTTCCTAAGTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR GCA 90 bp CCTTCCCTATTATATAAATTGATATCATTGCCAAGTGAGATACTGTACTGGAGACAGGCAGACACCCTTTaGGTATTCGATTCTTTTAAT +
Preference number: 4 (lower is better)
Translates to: PSLLYKLISLPSEILYWRQADTL*VFDSFN
Trigger: ATTAAAAGAATCGAATACGCAAAGGGTGTCTGCCTG...TCTCCAGTACAGTATCTCACTTGGCAATGATATCAATTTATATAATAGGGAAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
3UTR CAA 72 bp GTTCTGCTGGTGGTTGACAGTTACATATTAATACTCTaGTTCGATCCTGTTCTTTATCTCACAAAATGTTTC +
Preference number: 4 (lower is better)
Translates to: VLLVVDSYILIL*FDPVLYLTKCF
Trigger: GAAACATTTTGTGAGATAAAGAACAGGATCGAACAAGAGTATTAATATGTAACTGTCAACCACCAGCAGAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS CCA 90 bp CAGCAGTTGAAGTTCATCAGGCACACCGTGAAGTGCAGAGAGATCTaGAAGGAATGTCTCGCCCCACACTCCAGGGCTCCAGGGGAGCAG +
Preference number: 5 (lower is better)
Translates to: QQLKFIRHTVKCREI*KECLAPHSRAPGEQ
Trigger: CTGCTCCCCTGGAGCCCTGGAGTGTGGGGCGAGACATTCCTTCCAGATCTCTCTGCACTTCACGGTGTGCCTGATGAACTTCAACTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS TCA 90 bp TCTCCCTCCTCCTTAGACATAGGGGTGAGGAGCAGCGGCAGTGTTTaGGCAAAGACCAGAATCCAGACGGACAGGCAGACACCCTTTGCG +
Preference number: 5 (lower is better)
Translates to: SPSSLDIGVRSSGSV*AKTRIQTDRQTPFA
Trigger: CGCAAAGGGTGTCTGCCTGTCCGTCTGGATTCTGGTCTTTGCTCAAACACTGCCGCTGCTCCTCACCCCTATGTCTAAGGAGGAGGGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR CAA 90 bp CGAGCAGTGGTCCAAAGGCACTATCCTGGGTGCTCAGGGAAGGGCTTGATGCTTGGGTCCATGCAGCAGTaGAAGTTCATCAGGCACACC +
Preference number: 5 (lower is better)
Translates to: RAVVQRHYPGCSGKGLMLGSMQQ*KFIRHT
Trigger: GGTGTGCCTGATGAACTTCAACTGCTGCATGGACCC...AAGCATCAAGCCCTTCCCTGAGCACCCAGGATAGTGCCTTTGGACCACTGCTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS GCA 90 bp AACGGGTCCATGCAGCAGTTGAAGTTCATCAGGCACACCGTGAAGTaGAGAGAGATCTGGAAGGAATGTCTCGCCCCACACTCCAGGGCT +
Preference number: 5 (lower is better)
Translates to: NGSMQQLKFIRHTVK*REIWKECLAPHSRA
Trigger: AGCCCTGGAGTGTGGGGCGAGACATTCCTTCCAGATCTCTCTGCACTTCACGGTGTGCCTGATGAACTTCAACTGCTGCATGGACCCGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR CAA 90 bp CGAGCAGTGGTCCAAAGGCACTATCCTGGGTGCTCAGGGAAGGGCTTGATGCTTCTGTCCCTTCAAAGTTaGGATACTCCATGCAAGTGG +
Preference number: 5 (lower is better)
Translates to: RAVVQRHYPGCSGKGLMLLSLQS*DTPCKW
Trigger: CCACTTGCATGGAGTATCCAAACTTTGAAGGGACAG...AAGCATCAAGCCCTTCCCTGAGCACCCAGGATAGTGCCTTTGGACCACTGCTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS TCA 90 bp CATCATCTGAGACTCTGTCATTTCCCGCGAATTCTCTTCAGGGGCTaGCCTCACTGCGCTGGAGATCGACACACTCACTTGACGTTTGAG +
Preference number: 5 (lower is better)
Translates to: HHLRLCHFPRILFRG*PHCAGDRHTHLTFE
Trigger: CTCAAACGTCAAGTGAGTGTGTCGATCTCCAGCGCAGTGAGGTCAGCCCCTGAAGAGAATTCGCGGGAAATGACAGAGTCTCAGATGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR CAA 90 bp CTAAGGCTAGTCTGTCTACATAGAGACTTCCAGGCCTGCAAGACTGACATAGCTTCCATGCAAGTGGTCTaGTCTCCCTCCTCCTTAGAC +
Preference number: 5 (lower is better)
Translates to: LRLVCLHRDFQACKTDIASMQVV*SPSSLD
Trigger: GTCTAAGGAGGAGGGAGACAAGACCACTTGCATGGA...AGCTATGTCAGTCTTGCAGGCCTGGAAGTCTCTATGTAGACAGACTAGCCTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR CAA 90 bp CTAAGGCTAGTCTGTCTACATAGAGACTTCCAGGCCTGCAAGACTGACATAGCTGTGAGTGGGTTCTGCTaGGCAGTCCTGAAGAGTTTG +
Preference number: 5 (lower is better)
Translates to: LRLVCLHRDFQACKTDIAVSGFC*AVLKSL
Trigger: CAAACTCTTCAGGACTGCCAAGCAGAACCCACTCAC...AGCTATGTCAGTCTTGCAGGCCTGGAAGTCTCTATGTAGACAGACTAGCCTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS TCA 90 bp TCTTCAGGGGCTGACCTCACTGCGCTGGAGATCGACACACTCACTTaGCGTTTGAGCATCTTCATGACCTTTCTCTTATACCCTTTGCAT +
Preference number: 5 (lower is better)
Translates to: SSGADLTALEIDTLT*RLSIFMTFLLYPLH
Trigger: ATGCAAAGGGTATAAGAGAAAGGTCATGAAGATGCTCAAACGTCAAGTGAGTGTGTCGATCTCCAGCGCAGTGAGGTCAGCCCCTGAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS GCA 90 bp TGTTTGAGCAAAGACCAGAATCCAGACGGACAGGCAGACACCCTTTaGGTATTCGATTCTTTTAATCTTGTTGTAGCGCAGAGGGTGCAC +
Preference number: 5 (lower is better)
Translates to: CLSKDQNPDGQADTL*VFDSFNLVVAQRVH
Trigger: GTGCACCCTCTGCGCTACAACAAGATTAAAAGAATCGAATACGCAAAGGGTGTCTGCCTGTCCGTCTGGATTCTGGTCTTTGCTCAAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS-3UTR CAA 90 bp AGCAGTGGTCCAAAGGCACTATCCTGGGTGCTCAGGGAAGGGCTTGATGCTTCTATGAGGATAATTGTGTaGAGAGCCTTTTTGTTCACA +
Preference number: 5 (lower is better)
Translates to: SSGPKALSWVLREGLDASMRIIV*RAFLFT
Trigger: TGTGAACAAAAAGGCTCTCAACACAATTATCCTCAT...AGAAGCATCAAGCCCTTCCCTGAGCACCCAGGATAGTGCCTTTGGACCACTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS CCA 90 bp AATTGTGTTGAGAGCCTTTTTGTTCACACCAGATTTCTCGGTGAGTaGGTTCTGCTTGGCAGTCCTGAAGAGTTTGCAGCAGATCTGAGA +
Preference number: 5 (lower is better)
Translates to: NCVESLFVHTRFLGE*VLLGSPEEFAADLR
Trigger: TCTCAGATCTGCTGCAAACTCTTCAGGACTGCCAAGCAGAACCCACTCACCGAGAAATCTGGTGTGAACAAAAAGGCTCTCAACACAATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS GCA 90 bp TTGACGTTTGAGCATCTTCATGACCTTTCTCTTATACCCTTTGCATaGAAAGAAGTATATGAACGGGTCCATGCAGCAGTTGAAGTTCAT +
Preference number: 5 (lower is better)
Translates to: LTFEHLHDLSLIPFA*KEVYERVHAAVEVH
Trigger: ATGAACTTCAACTGCTGCATGGACCCGTTCATATACTTCTTTGCATGCAAAGGGTATAAGAGAAAGGTCATGAAGATGCTCAAACGTCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS CAA 90 bp GTCTCCCTCCTCCTTAGACATAGGGGTGAGGAGCAGCGGCAGTGTTaGAGCAAAGACCAGAATCCAGACGGACAGGCAGACACCCTTTGC +
Preference number: 6 (lower is better)
Translates to: VSLLLRHRGEEQRQC*SKDQNPDGQADTLC
Trigger: GCAAAGGGTGTCTGCCTGTCCGTCTGGATTCTGGTCTTTGCTCAAACACTGCCGCTGCTCCTCACCCCTATGTCTAAGGAGGAGGGAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS CAA 72 bp CTCCTTAGACATAGGGGTGAGGAGCAGCGGCAGTGTTaGAGCAAAGACCAGAATCCAGACGGACAGGCAGAC +
Preference number: 6 (lower is better)
Translates to: LLRHRGEEQRQC*SKDQNPDGQAD
Trigger: GTCTGCCTGTCCGTCTGGATTCTGGTCTTTGCTCAAACACTGCCGCTGCTCCTCACCCCTATGTCTAAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS CAA 90 bp AGGGACGCTGTCCCTTCAAAGTTTGGATACTCCATGCAAGTGGTCTaGTCTCCCTCCTCCTTAGACATAGGGGTGAGGAGCAGCGGCAGT +
Preference number: 6 (lower is better)
Translates to: RDAVPSKFGYSMQVV*SPSSLDIGVRSSGS
Trigger: ACTGCCGCTGCTCCTCACCCCTATGTCTAAGGAGGAGGGAGACAAGACCACTTGCATGGAGTATCCAAACTTTGAAGGGACAGCGTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS TCA 72 bp AGACTCTGTCATTTCCCGCGAATTCTCTTCAGGGGCTaGCCTCACTGCGCTGGAGATCGACACACTCACTTG +
Preference number: 6 (lower is better)
Translates to: RLCHFPRILFRG*PHCAGDRHTHL
Trigger: CAAGTGAGTGTGTCGATCTCCAGCGCAGTGAGGTCAGCCCCTGAAGAGAATTCGCGGGAAATGACAGAGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS CCA 72 bp CAGAATCCACGGCAGGGACGCTGTCCCTTCAAAGTTTaGATACTCCATGCAAGTGGTCTTGTCTCCCTCCTC +
Preference number: 6 (lower is better)
Translates to: QNPRQGRCPFKV*ILHASGLVSLL
Trigger: GAGGAGGGAGACAAGACCACTTGCATGGAGTATCCAAACTTTGAAGGGACAGCGTCCCTGCCGTGGATTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS CAA 72 bp GCAGAATCCACGGCAGGGACGCTGTCCCTTCAAAGTTaGGATACTCCATGCAAGTGGTCTTGTCTCCCTCCT +
Preference number: 6 (lower is better)
Translates to: AESTAGTLSLQS*DTPCKWSCLPP
Trigger: AGGAGGGAGACAAGACCACTTGCATGGAGTATCCAAACTTTGAAGGGACAGCGTCCCTGCCGTGGATTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS GCA 72 bp ATGCAGCAGTTGAAGTTCATCAGGCACACCGTGAAGTaGAGAGAGATCTGGAAGGAATGTCTCGCCCCACAC +
Preference number: 6 (lower is better)
Translates to: MQQLKFIRHTVK*REIWKECLAPH
Trigger: GTGTGGGGCGAGACATTCCTTCCAGATCTCTCTGCACTTCACGGTGTGCCTGATGAACTTCAACTGCTGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS CAA 72 bp GTCCCTTCAAAGTTTGGATACTCCATGCAAGTGGTCTaGTCTCCCTCCTCCTTAGACATAGGGGTGAGGAGC +
Preference number: 6 (lower is better)
Translates to: VPSKFGYSMQVV*SPSSLDIGVRS
Trigger: GCTCCTCACCCCTATGTCTAAGGAGGAGGGAGACAAGACCACTTGCATGGAGTATCCAAACTTTGAAGGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS TCA 72 bp TACCTTCCATTGGAGGCCTTGGAGTGGATCATCATCTaGGACTCTGTCATTTCCCGCGAATTCTCTTCAGGG +
Preference number: 6 (lower is better)
Translates to: YLPLEALEWIII*DSVISREFSSG
Trigger: CCCTGAAGAGAATTCGCGGGAAATGACAGAGTCTCAGATGATGATCCACTCCAAGGCCTCCAATGGAAGGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS GCA 72 bp CCAGGCTGTAATGCAGAGGCATTAATACCCTGGCTGTaGTGTGGTGGGCATAGAGATCACAGTTATTGCCAT +
Preference number: 6 (lower is better)
Translates to: PGCNAEALIPWL*CGGHRDHSYCH
Trigger: ATGGCAATAACTGTGATCTCTATGCCCACCACAGCACAGCCAGGGTATTAATGCCTCTGCATTACAGCCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049872.9
ENSMUST00000227267.2
CDS CCA 72 bp GAGAGCCTTTTTGTTCACACCAGATTTCTCGGTGAGTaGGTTCTGCTTGGCAGTCCTGAAGAGTTTGCAGCA +
Preference number: 6 (lower is better)
Translates to: ESLFVHTRFLGE*VLLGSPEEFAA
Trigger: TGCTGCAAACTCTTCAGGACTGCCAAGCAGAACCCACTCACCGAGAAATCTGGTGTGAACAAAAAGGCTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS TCA 72 bp GCTGACCTCACTGCGCTGGAGATCGACACACTCACTTaGCGTTTGAGCATCTTCATGACCTTTCTCTTATAC +
Preference number: 6 (lower is better)
Translates to: ADLTALEIDTLT*RLSIFMTFLLY
Trigger: GTATAAGAGAAAGGTCATGAAGATGCTCAAACGTCAAGTGAGTGTGTCGATCTCCAGCGCAGTGAGGTCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9
CDS GCA 72 bp GAGCATCTTCATGACCTTTCTCTTATACCCTTTGCATaGAAAGAAGTATATGAACGGGTCCATGCAGCAGTT +
Preference number: 6 (lower is better)
Translates to: EHLHDLSLIPFA*KEVYERVHAAV
Trigger: AACTGCTGCATGGACCCGTTCATATACTTCTTTGCATGCAAAGGGTATAAGAGAAAGGTCATGAAGATGCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049872.9