RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GPR158 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045967

Ensembl transcript IDs: ENSMUST00000055946.8

Found 285 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGCAAATCTTCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTaGAGTGAAGTCAGTGACAGTTGCCTGCTTAATTCTGAGGCAAAT +
Preference number: 1 (lower is better)
Translates to: GKSSVSHTSSRVTLK*SEVSDSCLLNSEAN
Trigger: ATTTGCCTCAGAATTAAGCAGGCAACTGTCACTGACTTCACTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGAAGATTTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR GCA 90 bp TGGCTTTTCATGGCAGAGTCAGCCTTCCTTCTTATGATGCATAATTaGCTTTTTCTGGCCTTCTCCAGCCCTTGCCTTCACCTTACTGCA +
Preference number: 1 (lower is better)
Translates to: WLFMAESAFLLMMHN*LFLAFSSPCLHLTA
Trigger: TGCAGTAAGGTGAAGGCAAGGGCTGGAGAAGGCCAGAAAAAGGCAATTATGCATCATAAGAAGGAAGGCTGACTCTGCCATGAAAAGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR GCA 90 bp ACATCAAGCAGGGTCACCCTGAAGTGCAGTGAAGTCAGTGACAGTTaGCTGCTTAATTCTGAGGCAAATCTAGTGCTAACAGCTCTCAGA +
Preference number: 1 (lower is better)
Translates to: TSSRVTLKCSEVSDS*LLNSEANLVLTALR
Trigger: TCTGAGAGCTGTTAGCACTAGATTTGCCTCAGAATTAAGCAGGCAACTGTCACTGACTTCACTGCACTTCAGGGTGACCCTGCTTGATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR TCA 90 bp GTGCAGCCTGCACATGCATTGAAAGGACAACCTAGCAAATGTTTGTaGGACCTTCACACTGTATGCACTTTCTATTGTTCTCAGCCAGGG +
Preference number: 1 (lower is better)
Translates to: VQPAHALKGQPSKCL*DLHTVCTFYCSQPG
Trigger: CCCTGGCTGAGAACAATAGAAAGTGCATACAGTGTGAAGGTCTCACAAACATTTGCTAGGTTGTCCTTTCAATGCATGTGCAGGCTGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR GCA 90 bp AGCAAGCAAATGGGTATGCCCAGCTCTGCCAACTCCTCAAGTGCTTaGTTTCTCCTGAATACAAAAGTAAACACTGAGCAAAGTTTGATG +
Preference number: 1 (lower is better)
Translates to: SKQMGMPSSANSSSA*FLLNTKVNTEQSLM
Trigger: CATCAAACTTTGCTCAGTGTTTACTTTTGTATTCAGGAGAAAGCAAGCACTTGAGGAGTTGGCAGAGCTGGGCATACCCATTTGCTTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR TCA 90 bp TTGATGATAGACACAAAGCATAAGCACAGCCTTATATCCACCTTCTaGTTCCTTCTCCCCTCCTGCATCATCCTAGCAAATTCTTTTTGT +
Preference number: 1 (lower is better)
Translates to: LMIDTKHKHSLISTF*FLLPSCIILANSFC
Trigger: ACAAAAAGAATTTGCTAGGATGATGCAGGAGGGGAGAAGGAATCAGAAGGTGGATATAAGGCTGTGCTTATGCTTTGTGTCTATCATCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR TCA 90 bp CTTAATTCTGAGGCAAATCTAGTGCTAACAGCTCTCAGACACAAGTaGAACAAGTACGCAAGTCTACAAACTCTAAGCCAAGTTCACAAA +
Preference number: 1 (lower is better)
Translates to: LNSEANLVLTALRHK*NKYASLQTLSQVHK
Trigger: TTTGTGAACTTGGCTTAGAGTTTGTAGACTTGCGTACTTGTTTCACTTGTGTCTGAGAGCTGTTAGCACTAGATTTGCCTCAGAATTAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR TCA 90 bp TTTCCTCATTCGGCTTCTTCCTTAGGAAATGCTAATGTGAAATACTaGAAGAGTCATTGGGTTGATTTAGCTCTGACTTGGAACAAACAA +
Preference number: 1 (lower is better)
Translates to: FPHSASSLGNANVKY*KSHWVDLALTWNKQ
Trigger: TTGTTTGTTCCAAGTCAGAGCTAAATCAACCCAATGACTCTTTCAGTATTTCACATTAGCATTTCCTAAGGAAGAAGCCGAATGAGGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR GCA 90 bp GCTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGCAAGCAAATGGGTATaGCCAGCTCTGCCAACTCCT +
Preference number: 2 (lower is better)
Translates to: ARSQRQCVVSPTYHHSHAASKWV*PALPTP
Trigger: AGGAGTTGGCAGAGCTGGGCATACCCATTTGCTTGC...TGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR TCA 90 bp CTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGTTGGCAAATCTTCTGTaGGCCACACATCAAGCAGGG +
Preference number: 2 (lower is better)
Translates to: LEVKGSVLSVLPITTRMQLANLL*ATHQAG
Trigger: CCCTGCTTGATGTGTGGCTCACAGAAGATTTGCCAA...CTGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR TCA 90 bp CTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGAGCCTGCACATGCATTaGAAGGACAACCTAGCAAAT +
Preference number: 2 (lower is better)
Translates to: LEVKGSVLSVLPITTRMQSLHMH*KDNLAN
Trigger: ATTTGCTAGGTTGTCCTTTCAATGCATGTGCAGGCT...CTGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR GCA 90 bp GCTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGCAATTTCCTGGACCTaGAGTATGCACTCGTTGTTA +
Preference number: 2 (lower is better)
Translates to: ARSQRQCVVSPTYHHSHAAISWT*SMHSLL
Trigger: TAACAACGAGTGCATACTGCAGGTCCAGGAAATTGC...TGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR TCA 90 bp GGGGCAGGGGCAGACTGTCACTATGGTATAATTTGGCAAATCTTCTGTGAGCCAGGTTGCAATGACAATTaGGTAGCTGCAGATTGCATA +
Preference number: 2 (lower is better)
Translates to: GAGADCHYGIIWQIFCEPGCNDN*VAADCI
Trigger: TATGCAATCTGCAGCTACTCAATTGTCATTGCAACC...TGGCTCACAGAAGATTTGCCAAATTATACCATAGTGACAGTCTGCCCCTGCCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR TCA 90 bp CTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGTTTGGTAGGTTGCAATaGCAATTGAGTAGCTGCAGA +
Preference number: 2 (lower is better)
Translates to: LEVKGSVLSVLPITTRMQFGRLQ*QLSSCR
Trigger: TCTGCAGCTACTCAATTGTCATTGCAACCTACCAAA...CTGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR TCA 90 bp CTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGAATCTCTTTGGGATTTaGGCCCAGCAAATTCTGTAC +
Preference number: 2 (lower is better)
Translates to: LEVKGSVLSVLPITTRMQNLFGI*AQQILY
Trigger: GTACAGAATTTGCTGGGCTCAAATCCCAAAGAGATT...CTGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR GCA 90 bp GGCAAATCTTCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTGCAGTGAACTTATGATGCATAATTaGCTTTTTCTGGCCTTCTCC +
Preference number: 2 (lower is better)
Translates to: GKSSVSHTSSRVTLKCSELMMHN*LFLAFS
Trigger: GGAGAAGGCCAGAAAAAGGCAATTATGCATCATAAG...TTCACTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGAAGATTTGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR GCA 90 bp GCTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCATCAGTGACAGTTGCCTaGTTAATTCTGAGGCAAATC +
Preference number: 2 (lower is better)
Translates to: ARSQRQCVVSPTYHHSHASVTVA*LILRQI
Trigger: GATTTGCCTCAGAATTAAGCAGGCAACTGTCACTGA...TGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR TCA 90 bp CTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGCAGCCTTCCTTCTTATaGTGCATAATTGCCTTTTTC +
Preference number: 2 (lower is better)
Translates to: LEVKGSVLSVLPITTRMQQPSFL*CIIAFF
Trigger: GAAAAAGGCAATTATGCATCATAAGAAGGAAGGCTG...CTGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR CAA 90 bp GTTCTGGTACTGGGGAGTGTAAAGAGCCTGTACCACCTATGGGCTTaGAGTAAATCAAGTTATAAAATCTCTTTGGGATTTGAGCCCAGC +
Preference number: 2 (lower is better)
Translates to: VLVLGSVKSLYHLWA*SKSSYKISLGFEPS
Trigger: GCTGGGCTCAAATCCCAAAGAGATTTTATAACTTGATTTACTCAAAGCCCATAGGTGGTACAGGCTCTTTACACTCCCCAGTACCAGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR TCA 90 bp ATTTGGCAAATCTTCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTGCAGACAATCTGGAATGCTTaGATACAAGACACAACAATG +
Preference number: 2 (lower is better)
Translates to: IWQIFCEPHIKQGHPEVQTIWNA*IQDTTM
Trigger: CATTGTTGTGTCTTGTATTCAAGCATTCCAGATTGT...CTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGAAGATTTGCCAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR TCA 90 bp GGGGCAGGGGCAGACTGTCACTATGGTATAATTTGGCAAATCTTCTGTGAGCCACTAGAAGATATGCTTTaGTGTATGCACACCAATCTT +
Preference number: 2 (lower is better)
Translates to: GAGADCHYGIIWQIFCEPLEDML*CMHTNL
Trigger: AAGATTGGTGTGCATACATCAAAGCATATCTTCTAG...TGGCTCACAGAAGATTTGCCAAATTATACCATAGTGACAGTCTGCCCCTGCCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR CCA 90 bp TTCTCAGCCAGGGAAAAGAGCTTCCAGAATGACAGAGTTCAATTTCTTTTGGTGCCTCCAGTGTTGATCTaGCTTTTCATGGCAGAGTCA +
Preference number: 2 (lower is better)
Translates to: FSAREKSFQNDRVQFLLVPPVLI*LFMAES
Trigger: TGACTCTGCCATGAAAAGCCAGATCAACACTGGAGG...CACCAAAAGAAATTGAACTCTGTCATTCTGGAAGCTCTTTTCCCTGGCTGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR TCA 90 bp GCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGTCAGAATTAGGCTTTGCATTTTaGGCTAGGTGGCTTGCAAGG +
Preference number: 2 (lower is better)
Translates to: AWILESYFGIAILRAKSELGFAF*ARWLAR
Trigger: CCTTGCAAGCCACCTAGCTCAAAATGCAAAGCCTAA...TTCTGACTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR TCA 90 bp TTCTCAGCCAGGGAAAAGAGCTTCCAGAATGACAGAGTTCAATTTCTTTTGGTGGCTCTCAGACACAAGTaGAACAAGTACGCAAGTCTA +
Preference number: 2 (lower is better)
Translates to: FSAREKSFQNDRVQFLLVALRHK*NKYASL
Trigger: TAGACTTGCGTACTTGTTTCACTTGTGTCTGAGAGC...CACCAAAAGAAATTGAACTCTGTCATTCTGGAAGCTCTTTTCCCTGGCTGAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR GCA 90 bp AAATGTGCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGTGCGTCTGTCTTCCATaGCTCCTGGTGAATCTTGCT +
Preference number: 2 (lower is better)
Translates to: KCAWILESYFGIAILRAKCVCLP*LLVNLA
Trigger: AGCAAGATTCACCAGGAGGCATGGAAGACAGACGCA...CTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGCACATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR GCA 90 bp TTCTCAGCCAGGGAAAAGAGCTTCCAGAATGACAGAGTTCAATTTCTTTTGGTGGAAGTCAGTGACAGTTaGCTGCTTAATTCTGAGGCA +
Preference number: 2 (lower is better)
Translates to: FSAREKSFQNDRVQFLLVEVSDS*LLNSEA
Trigger: TGCCTCAGAATTAAGCAGGCAACTGTCACTGACTTC...CACCAAAAGAAATTGAACTCTGTCATTCTGGAAGCTCTTTTCCCTGGCTGAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR CCA 90 bp TTCTCAGCCAGGGAAAAGAGCTTCCAGAATGACAGAGTTCAATTTCTTTTGGTGTACAACAAGCCATGGTaGGAAACAAAAGAGTCAGAC +
Preference number: 2 (lower is better)
Translates to: FSAREKSFQNDRVQFLLVYNKPW*ETKESD
Trigger: GTCTGACTCTTTTGTTTCCCACCATGGCTTGTTGTA...CACCAAAAGAAATTGAACTCTGTCATTCTGGAAGCTCTTTTCCCTGGCTGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR CAA 90 bp AACCTAGGAAGCAAATACAAGACAACTGTCGGGATTCAATCCGTATaGCCACCGAAGTTTACGAGAGGTCAAGTCATAATTTATGTTGTA +
Preference number: 2 (lower is better)
Translates to: NLGSKYKTTVGIQSV*PPKFTRGQVIIYVV
Trigger: TACAACATAAATTATGACTTGACCTCTCGTAAACTTCGGTGGCAATACGGATTGAATCCCGACAGTTGTCTTGTATTTGCTTCCTAGGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR GCA 90 bp TTCTCAGCCAGGGAAAAGAGCTTCCAGAATGACAGAGTTCAATTTCTTTTGGTGAACTCCTCAAGTGCTTaGTTTCTCCTGAATACAAAA +
Preference number: 2 (lower is better)
Translates to: FSAREKSFQNDRVQFLLVNSSSA*FLLNTK
Trigger: TTTTGTATTCAGGAGAAAGCAAGCACTTGAGGAGTT...CACCAAAAGAAATTGAACTCTGTCATTCTGGAAGCTCTTTTCCCTGGCTGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR CAA 90 bp GTAAAACAGTTCCTATGGATGGAAATGTCTTCGTCACATAAGCAGTaGTTTAGTATTTATGATGGGAGAAAATCAAGCCTGGGCTGTAGT +
Preference number: 2 (lower is better)
Translates to: VKQFLWMEMSSSHKQ*FSIYDGRKSSLGCS
Trigger: ACTACAGCCCAGGCTTGATTTTCTCCCATCATAAATACTAAACAACTGCTTATGTGACGAAGACATTTCCATCCATAGGAACTGTTTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR CAA 90 bp TCAGCCAGGGAAAAGAGCTTCCAGAATGACAGAGTTCAATTTCTTTaGGTGATAAGTTATGAAAATGAAGCTCTAGGAAAGAACCTAGCT +
Preference number: 2 (lower is better)
Translates to: SAREKSFQNDRVQFL*VISYENEALGKNLA
Trigger: AGCTAGGTTCTTTCCTAGAGCTTCATTTTCATAACTTATCACCAAAAGAAATTGAACTCTGTCATTCTGGAAGCTCTTTTCCCTGGCTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR CCA 90 bp AAATGTGCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGATAGGTAATGAAGGTTaGCTTTTCAGTCAGCTACTT +
Preference number: 2 (lower is better)
Translates to: KCAWILESYFGIAILRAKIGNEG*LFSQLL
Trigger: AAGTAGCTGACTGAAAAGCCAACCTTCATTACCTAT...CTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGCACATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR CCA 90 bp AAACAGTTCCTATGGATGGAAATGTCTTCGTCACATAAGCAGTTGTTTAGTATTCATTACAACAAGCCATaGTGGGAAACAAAAGAGTCA +
Preference number: 2 (lower is better)
Translates to: KQFLWMEMSSSHKQLFSIHYNKP*WETKES
Trigger: TGACTCTTTTGTTTCCCACCATGGCTTGTTGTAATG...AATACTAAACAACTGCTTATGTGACGAAGACATTTCCATCCATAGGAACTGTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR CAA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCGGCCTTCTCCAGCCCTaGCCTTCACCTTACTGCACT +
Preference number: 3 (lower is better)
Translates to: ELSQKLRMFMLEISMECSGLLQP*PSPYCT
Trigger: AGTGCAGTAAGGTGAAGGCAAGGGCTGGAGAAGGCC...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR GCA 72 bp TCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTaGAGTGAAGTCAGTGACAGTTGCCTGCTTAATTCT +
Preference number: 3 (lower is better)
Translates to: SVSHTSSRVTLK*SEVSDSCLLNS
Trigger: AGAATTAAGCAGGCAACTGTCACTGACTTCACTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR CCA 72 bp CAGGCGGAAATGCTAAGCTGTCCTCCAGTGTTGATCTaGCTTTTCATGGCAGAGTCAGCCTTCCTTCTTATG +
Preference number: 3 (lower is better)
Translates to: QAEMLSCPPVLI*LFMAESAFLLM
Trigger: CATAAGAAGGAAGGCTGACTCTGCCATGAAAAGCCAGATCAACACTGGAGGACAGCTTAGCATTTCCGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR GCA 72 bp ATGCATAATTGCCTTTTTCTGGCCTTCTCCAGCCCTTaGCTTCACCTTACTGCACTATGTGCCATGTTTCCC +
Preference number: 3 (lower is better)
Translates to: MHNCLFLAFSSP*LHLTALCAMFP
Trigger: GGGAAACATGGCACATAGTGCAGTAAGGTGAAGGCAAGGGCTGGAGAAGGCCAGAAAAAGGCAATTATGCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR CAA 90 bp AAACCTAGGAAGCAAATACAAGACAACTGTCGGGATTCAATCCGTATTGCCACCAGCTGTCCTCCAGTGTaGATCTGGCTTTTCATGGCA +
Preference number: 3 (lower is better)
Translates to: KPRKQIQDNCRDSIRIATSCPPV*IWLFMA
Trigger: TGCCATGAAAAGCCAGATCAACACTGGAGGACAGCT...GGTGGCAATACGGATTGAATCCCGACAGTTGTCTTGTATTTGCTTCCTAGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR GCA 72 bp TCCATGCGTCTGTCTTCCATGCCTCCTGGTGAATCTTaGTTGGTACCATTCAATCCCATGTGTAAAGACAGA +
Preference number: 3 (lower is better)
Translates to: SMRLSSMPPGES*LVPFNPMCKDR
Trigger: TCTGTCTTTACACATGGGATTGAATGGTACCAAGCAAGATTCACCAGGAGGCATGGAAGACAGACGCATGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR GCA 72 bp AGGGTCACCCTGAAGTGCAGTGAAGTCAGTGACAGTTaGCTGCTTAATTCTGAGGCAAATCTAGTGCTAACA +
Preference number: 3 (lower is better)
Translates to: RVTLKCSEVSDS*LLNSEANLVLT
Trigger: TGTTAGCACTAGATTTGCCTCAGAATTAAGCAGGCAACTGTCACTGACTTCACTGCACTTCAGGGTGACCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR CAA 90 bp GGGGCAGGGGCAGACTGTCACTATGGTATAATTTGGCAAATCTTCTGTGAGCCATTGAGTAGCTGCAGATaGCATAAATGTGTTGTGTCA +
Preference number: 3 (lower is better)
Translates to: GAGADCHYGIIWQIFCEPLSSCR*HKCVVS
Trigger: TGACACAACACATTTATGCAATCTGCAGCTACTCAA...TGGCTCACAGAAGATTTGCCAAATTATACCATAGTGACAGTCTGCCCCTGCCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR CAA 90 bp GGGGCAGGGGCAGACTGTCACTATGGTATAATTTGGCAAATCTTCTGTGAGCCAAAATCTCTTTGGGATTaGAGCCCAGCAAATTCTGTA +
Preference number: 3 (lower is better)
Translates to: GAGADCHYGIIWQIFCEPKSLWD*SPANSV
Trigger: TACAGAATTTGCTGGGCTCAAATCCCAAAGAGATTT...TGGCTCACAGAAGATTTGCCAAATTATACCATAGTGACAGTCTGCCCCTGCCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR CAA 90 bp GGCAAATCTTCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTGCAGTGAATCTAGAAGATATGCTTaGATGTATGCACACCAATCT +
Preference number: 3 (lower is better)
Translates to: GKSSVSHTSSRVTLKCSESRRYA*MYAHQS
Trigger: AGATTGGTGTGCATACATCAAAGCATATCTTCTAGA...TTCACTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGAAGATTTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR CAA 90 bp CTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGAGTCTTATTTCGGCATaGCAATCCTTAGAGCTAAGT +
Preference number: 3 (lower is better)
Translates to: LEVKGSVLSVLPITTRMQSLISA*QSLELS
Trigger: ACTTAGCTCTAAGGATTGCAATGCCGAAATAAGACT...CTGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR CAA 90 bp AAACCTAGGAAGCAAATACAAGACAACTGTCGGGATTCAATCCGTATTGCCACCCAGCCTGCACATGCATaGAAAGGACAACCTAGCAAA +
Preference number: 3 (lower is better)
Translates to: KPRKQIQDNCRDSIRIATQPAHA*KGQPSK
Trigger: TTTGCTAGGTTGTCCTTTCAATGCATGTGCAGGCTG...GGTGGCAATACGGATTGAATCCCGACAGTTGTCTTGTATTTGCTTCCTAGGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR CAA 90 bp GCTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCACCTAGCAAATTCTTTTaGTTGCTCACCAAAGGTAAA +
Preference number: 3 (lower is better)
Translates to: ARSQRQCVVSPTYHHSHAPSKFF*LLTKGK
Trigger: TTTACCTTTGGTGAGCAACAAAAAGAATTTGCTAGG...TGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR TCA 72 bp CTTAAAACAACAACAGGGTGCAGCCTGCACATGCATTaGAAGGACAACCTAGCAAATGTTTGTGAGACCTTC +
Preference number: 3 (lower is better)
Translates to: LKTTTGCSLHMH*KDNLANVCETF
Trigger: GAAGGTCTCACAAACATTTGCTAGGTTGTCCTTTCAATGCATGTGCAGGCTGCACCCTGTTGTTGTTTTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR CAA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCGCTAACAAAGATGCCTaGGTAACTTGTGATTTTCAG +
Preference number: 3 (lower is better)
Translates to: ELSQKLRMFMLEISMECSANKDA*VTCDFQ
Trigger: CTGAAAATCACAAGTTACCAAGGCATCTTTGTTAGC...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR TCA 72 bp GAGGCAAATCTAGTGCTAACAGCTCTCAGACACAAGTaGAACAAGTACGCAAGTCTACAAACTCTAAGCCAA +
Preference number: 3 (lower is better)
Translates to: EANLVLTALRHK*NKYASLQTLSQ
Trigger: TTGGCTTAGAGTTTGTAGACTTGCGTACTTGTTTCACTTGTGTCTGAGAGCTGTTAGCACTAGATTTGCCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR CAA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCAGTTATAAAATCTCTTaGGGATTTGAGCCCAGCAAA +
Preference number: 3 (lower is better)
Translates to: ELSQKLRMFMLEISMECSSYKIS*GFEPSK
Trigger: TTTGCTGGGCTCAAATCCCAAAGAGATTTTATAACT...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR-3UTR CAA 90 bp TTCTCAGCCAGGGAAAAGAGCTTCCAGAATGACAGAGTTCAATTTCTTTTGGTGTCGTCACATAAGCAGTaGTTTAGTATTTATGATGGG +
Preference number: 3 (lower is better)
Translates to: FSAREKSFQNDRVQFLLVSSHKQ*FSIYDG
Trigger: CCCATCATAAATACTAAACAACTGCTTATGTGACGA...CACCAAAAGAAATTGAACTCTGTCATTCTGGAAGCTCTTTTCCCTGGCTGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR TCA 72 bp CAGCATGGAATGCAGCAAGTTCTAGAAGATATGCTTTaGTGTATGCACACCAATCTTAGGCTTTGCATTTTG +
Preference number: 3 (lower is better)
Translates to: QHGMQQVLEDML*CMHTNLRLCIL
Trigger: CAAAATGCAAAGCCTAAGATTGGTGTGCATACATCAAAGCATATCTTCTAGAACTTGCTGCATTCCATGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR CCA 72 bp TCTTTTTGTTGCTCACCAAAGGTAAAACAGTTCCTATaGATGGAAATGTCTTCGTCACATAAGCAGTTGTTT +
Preference number: 3 (lower is better)
Translates to: SFCCSPKVKQFL*MEMSSSHKQLF
Trigger: AAACAACTGCTTATGTGACGAAGACATTTCCATCCATAGGAACTGTTTTACCTTTGGTGAGCAACAAAAAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp ATTTGGCAAATCTTCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTGCAGTCCTCGCGGGTGGCCTaGAGGAAGACCTGCGGGGCG +
Preference number: 4 (lower is better)
Translates to: IWQIFCEPHIKQGHPEVQSSRVA*RKTCGA
Trigger: CGCCCCGCAGGTCTTCCTCCAGGCCACCCGCGAGGA...CTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGAAGATTTGCCAAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp GCTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCACCGCCCGGGAGATGCTaGGCTCACCCTCCAGGAGAC +
Preference number: 4 (lower is better)
Translates to: ARSQRQCVVSPTYHHSHAPPGRC*AHPPGD
Trigger: GTCTCCTGGAGGGTGAGCCCAGCATCTCCCGGGCGG...TGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp GCTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGGTCCTGCAGCAGGATaGGACTCTCCTCGCGGGTGG +
Preference number: 4 (lower is better)
Translates to: ARSQRQCVVSPTYHHSHAGPAAG*DSPRGW
Trigger: CCACCCGCGAGGAGAGTCGCATCCTGCTGCAGGACC...TGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp CTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGAGGGGCAGCCTTCTCTaGAGGGCAGGCAGACGTGGG +
Preference number: 4 (lower is better)
Translates to: LEVKGSVLSVLPITTRMQRGSLL*RAGRRG
Trigger: CCCACGTCTGCCTGCCCTGCAGAGAAGGCTGCCCCT...CTGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp GGGGCAGGGGCAGACTGTCACTATGGTATAATTTGGCAAATCTTCTGTGAGCCACCACGGCGGTGCAAGTaGGGCCTCCACTTTCGCCGA +
Preference number: 4 (lower is better)
Translates to: GAGADCHYGIIWQIFCEPPRRCK*GLHFRR
Trigger: TCGGCGAAAGTGGAGGCCCCACTTGCACCGCCGTGG...TGGCTCACAGAAGATTTGCCAAATTATACCATAGTGACAGTCTGCCCCTGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCGCTCGCGGCAGCTGCTaGCCATGCTGCTTCCCCCTC +
Preference number: 4 (lower is better)
Translates to: ELSQKLRMFMLEISMECSARGSC*PCCFPL
Trigger: GAGGGGGAAGCAGCATGGTCAGCAGCTGCCGCGAGC...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCTGGCCGCCCGGGAGATaGTGGGCTCACCCTCCAGGA +
Preference number: 4 (lower is better)
Translates to: ELSQKLRMFMLEISMECSWPPGR*WAHPPG
Trigger: TCCTGGAGGGTGAGCCCAGCATCTCCCGGGCGGCCA...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp GGGGCAGGGGCAGACTGTCACTATGGTATAATTTGGCAAATCTTCTGTGAGCCAGGGGACCACTTGACGTaGCTCCTGTCCCCTCCAAGC +
Preference number: 4 (lower is better)
Translates to: GAGADCHYGIIWQIFCEPGDHLT*LLSPPS
Trigger: GCTTGGAGGGGACAGGAGCCACGTCAAGTGGTCCCC...TGGCTCACAGAAGATTTGCCAAATTATACCATAGTGACAGTCTGCCCCTGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp TTCTCAGCCAGGGAAAAGAGCTTCCAGAATGACAGAGTTCAATTTCTTTTGGTGGCCTGGAGGAAGACCTaGGGGGCGGGCGTGGACAGC +
Preference number: 4 (lower is better)
Translates to: FSAREKSFQNDRVQFLLVAWRKT*GAGVDS
Trigger: GCTGTCCACGCCCGCCCCGCAGGTCTTCCTCCAGGC...CACCAAAAGAAATTGAACTCTGTCATTCTGGAAGCTCTTTTCCCTGGCTGAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp ATTTGGCAAATCTTCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTGCAGCCGTGCAAGGAAGGATaGGAGCTGGCTAGGGACGGT +
Preference number: 4 (lower is better)
Translates to: IWQIFCEPHIKQGHPEVQPCKEG*ELARDG
Trigger: ACCGTCCCTAGCCAGCTCCCATCCTTCCTTGCACGG...CTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGAAGATTTGCCAAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCGACTCTCCTCGCGGGTaGCCTGGAGGAAGACCTGCG +
Preference number: 4 (lower is better)
Translates to: ELSQKLRMFMLEISMECSDSPRG*PGGRPA
Trigger: CGCAGGTCTTCCTCCAGGCCACCCGCGAGGAGAGTC...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp GCTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCACAACTCGTAGCGGCCTaGGCAGTTGGCTCTCTTCAG +
Preference number: 4 (lower is better)
Translates to: ARSQRQCVVSPTYHHSHAQLVAA*AVGSLQ
Trigger: CTGAAGAGAGCCAACTGCTCAGGCCGCTACGAGTTG...TGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp GCTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCACTGCCAGCATCCTCATaGCCCGACCACCAGTCATGT +
Preference number: 4 (lower is better)
Translates to: ARSQRQCVVSPTYHHSHALPASS*PDHQSC
Trigger: ACATGACTGGTGGTCGGGTCATGAGGATGCTGGCAG...TGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp GCTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAAGAGCCTGGTACCACTaGAGGTCATCCTGCACGGTC +
Preference number: 4 (lower is better)
Translates to: ARSQRQCVVSPTYHHSHARAWYH*RSSCTV
Trigger: GACCGTGCAGGATGACCTGCAGTGGTACCAGGCTCT...TGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCCCGGAGGGTCGAGGCTaGCACCAACCTCTCCCAATC +
Preference number: 4 (lower is better)
Translates to: ELSQKLRMFMLEISMECSPEGRG*HQPLPI
Trigger: GATTGGGAGAGGTTGGTGCCAGCCTCGACCCTCCGG...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp GGGGCAGGGGCAGACTGTCACTATGGTATAATTTGGCAAATCTTCTGTGAGCCATGGCTCATGAAATGCTaGAGGGACAGTCCGCACTGC +
Preference number: 4 (lower is better)
Translates to: GAGADCHYGIIWQIFCEPWLMKC*RDSPHC
Trigger: GCAGTGCGGACTGTCCCTTCAGCATTTCATGAGCCA...TGGCTCACAGAAGATTTGCCAAATTATACCATAGTGACAGTCTGCCCCTGCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCTTGGAGCCACGGCGGTaGAAGTGGGGCCTCCACTTT +
Preference number: 4 (lower is better)
Translates to: ELSQKLRMFMLEISMECSLEPRR*KWGLHF
Trigger: AAAGTGGAGGCCCCACTTGCACCGCCGTGGCTCCAA...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp CTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGGCACTCCAGATAAGGTaGGGACCACTTGACGTGGCT +
Preference number: 4 (lower is better)
Translates to: LEVKGSVLSVLPITTRMQALQIR*GPLDVA
Trigger: AGCCACGTCAAGTGGTCCCCACCTTATCTGGAGTGC...CTGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp CTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGCAGGGCAGGCAGACGTaGGTTTCTTCTGACACATCC +
Preference number: 4 (lower is better)
Translates to: LEVKGSVLSVLPITTRMQQGRQT*VSSDTS
Trigger: GGATGTGTCAGAAGAAACCCACGTCTGCCTGCCCTG...CTGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp GGGGCAGGGGCAGACTGTCACTATGGTATAATTTGGCAAATCTTCTGTGAGCCAGAAGCAGCCCAATGGTaGCTGTCACAGTCAAGTGAG +
Preference number: 4 (lower is better)
Translates to: GAGADCHYGIIWQIFCEPEAAQW*LSQSSE
Trigger: CTCACTTGACTGTGACAGTCACCATTGGGCTGCTTC...TGGCTCACAGAAGATTTGCCAAATTATACCATAGTGACAGTCTGCCCCTGCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp TTCTCAGCCAGGGAAAAGAGCTTCCAGAATGACAGAGTTCAATTTCTTTTGGTGGCAGACCAACGGCACTaGCTCAGTGGACTCGGCCTC +
Preference number: 4 (lower is better)
Translates to: FSAREKSFQNDRVQFLLVADQRH*LSGLGL
Trigger: GAGGCCGAGTCCACTGAGTCAGTGCCGTTGGTCTGC...CACCAAAAGAAATTGAACTCTGTCATTCTGGAAGCTCTTTTCCCTGGCTGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp ATTTGGCAAATCTTCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTGCAGTTGAGCTTTTGGCTCTaGAGGCATAGGACCAGGGGT +
Preference number: 4 (lower is better)
Translates to: IWQIFCEPHIKQGHPEVQLSFWL*RHRTRG
Trigger: ACCCCTGGTCCTATGCCTTCAGAGCCAAAAGCTCAA...CTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGAAGATTTGCCAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp CTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGCTGCACTGTGGTCTGTaGCTTCCTTGTCCTCTTTGG +
Preference number: 4 (lower is better)
Translates to: LEVKGSVLSVLPITTRMQLHCGL*LPCPLW
Trigger: CCAAAGAGGACAAGGAAGGCACAGACCACAGTGCAG...CTGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp TTCTCAGCCAGGGAAAAGAGCTTCCAGAATGACAGAGTTCAATTTCTTTTGGTGGTGGCCTCCTCCTCCTaGCTCTCCATGGGCAAGCTG +
Preference number: 4 (lower is better)
Translates to: FSAREKSFQNDRVQFLLVVASSS*LSMGKL
Trigger: CAGCTTGCCCATGGAGAGCCAGGAGGAGGAGGCCAC...CACCAAAAGAAATTGAACTCTGTCATTCTGGAAGCTCTTTTCCCTGGCTGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp CTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGTTTCTGGGGCTTTCTTaGCTCCTCCATGTGACCGGA +
Preference number: 4 (lower is better)
Translates to: LEVKGSVLSVLPITTRMQFLGLS*LLHVTG
Trigger: TCCGGTCACATGGAGGAGCCAAGAAAGCCCCAGAAA...CTGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp AAACCTAGGAAGCAAATACAAGACAACTGTCGGGATTCAATCCGTATTGCCACCTCTCCCAATCCCAGATaGGCGAGCAGGAGGCAGAAG +
Preference number: 4 (lower is better)
Translates to: KPRKQIQDNCRDSIRIATSPNPR*ASRRQK
Trigger: CTTCTGCCTCCTGCTCGCTCATCTGGGATTGGGAGA...GGTGGCAATACGGATTGAATCCCGACAGTTGTCTTGTATTTGCTTCCTAGGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp AAATGTGCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGGCGTTAGCCAGGTGGTaGGCGGAGGAGGACAGGTCC +
Preference number: 4 (lower is better)
Translates to: KCAWILESYFGIAILRAKALARW*AEEDRS
Trigger: GGACCTGTCCTCCTCCGCTCACCACCTGGCTAACGC...CTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGCACATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp GCTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCACGAATCCCAGGCCTTTaGTTGGCATACACTCTGAGT +
Preference number: 4 (lower is better)
Translates to: ARSQRQCVVSPTYHHSHARIPGL*LAYTLS
Trigger: ACTCAGAGTGTATGCCAATCAAAGGCCTGGGATTCG...TGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp GCTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCACTTCCTGAAAAATGGTaGTCTGGACCCCTTCTCTGG +
Preference number: 4 (lower is better)
Translates to: ARSQRQCVVSPTYHHSHALPEKW*SGPLLW
Trigger: CCAGAGAAGGGGTCCAGATCACCATTTTTCAGGAAG...TGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp GCTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCACACTCCAGGCTGAATTaGTACTGCTGTTCAGGTAGG +
Preference number: 4 (lower is better)
Translates to: ARSQRQCVVSPTYHHSHAHSRLN*YCCSGR
Trigger: CCTACCTGAACAGCAGTATCAATTCAGCCTGGAGTG...TGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp AAATGTGCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGCTCTCGAGGGGAATCTaGCCGTCCCGGAGGGTCGAG +
Preference number: 4 (lower is better)
Translates to: KCAWILESYFGIAILRAKLSRGI*PSRRVE
Trigger: CTCGACCCTCCGGGACGGCCAGATTCCCCTCGAGAG...CTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGCACATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp AAATGTGCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGCCCGTGGCCCCTGATTaGAGCCACGGCGGTGCAAGT +
Preference number: 4 (lower is better)
Translates to: KCAWILESYFGIAILRAKPVAPD*SHGGAS
Trigger: ACTTGCACCGCCGTGGCTCCAATCAGGGGCCACGGG...CTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGCACATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp AAACCTAGGAAGCAAATACAAGACAACTGTCGGGATTCAATCCGTATTGCCACCCCCTTGGCTGCACTGTaGTCTGTGCCTTCCTTGTCC +
Preference number: 4 (lower is better)
Translates to: KPRKQIQDNCRDSIRIATPLAAL*SVPSLS
Trigger: GGACAAGGAAGGCACAGACCACAGTGCAGCCAAGGG...GGTGGCAATACGGATTGAATCCCGACAGTTGTCTTGTATTTGCTTCCTAGGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp AAATGTGCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGAGGCAGCAGAGAGCGTaGCCAGCCACCCAGGCTTGT +
Preference number: 4 (lower is better)
Translates to: KCAWILESYFGIAILRAKRQQRA*PATQAC
Trigger: ACAAGCCTGGGTGGCTGGTCACGCTCTCTGCTGCCT...CTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGCACATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp GGGGCAGGGGCAGACTGTCACTATGGTATAATTTGGCAAATCTTCTGTGAGCCAGCATTTGTGAGTTCCTaGAAACCAGCCATCACTCGA +
Preference number: 4 (lower is better)
Translates to: GAGADCHYGIIWQIFCEPAFVSS*KPAITR
Trigger: TCGAGTGATGGCTGGTTTTCAGGAACTCACAAATGC...TGGCTCACAGAAGATTTGCCAAATTATACCATAGTGACAGTCTGCCCCTGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCAGACCACCAGCATGCTaGCAAAGTCCAGCAGCATAC +
Preference number: 4 (lower is better)
Translates to: ELSQKLRMFMLEISMECSRPPAC*QSPAAY
Trigger: GTATGCTGCTGGACTTTGTCAGCATGCTGGTGGTCT...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp GGGGCAGGGGCAGACTGTCACTATGGTATAATTTGGCAAATCTTCTGTGAGCCAACCTTCAAAACCCTGTaGAGCTTGAGGGTCACAGTT +
Preference number: 4 (lower is better)
Translates to: GAGADCHYGIIWQIFCEPTFKTL*SLRVTV
Trigger: AACTGTGACCCTCAAGCTTCACAGGGTTTTGAAGGT...TGGCTCACAGAAGATTTGCCAAATTATACCATAGTGACAGTCTGCCCCTGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp TTCTCAGCCAGGGAAAAGAGCTTCCAGAATGACAGAGTTCAATTTCTTTTGGTGGTTGTGAGCACTGGCTaGCTTGCAGACCAACGGCAC +
Preference number: 4 (lower is better)
Translates to: FSAREKSFQNDRVQFLLVVVSTG*LADQRH
Trigger: GTGCCGTTGGTCTGCAAGTCAGCCAGTGCTCACAAC...CACCAAAAGAAATTGAACTCTGTCATTCTGGAAGCTCTTTTCCCTGGCTGAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp GCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGTCAGAAGAGGAGGACAGGTCCTaGAGCAGGATGCGACTCTCC +
Preference number: 4 (lower is better)
Translates to: AWILESYFGIAILRAKSEEEDRS*SRMRLS
Trigger: GGAGAGTCGCATCCTGCTGCAGGACCTGTCCTCCTC...TTCTGACTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCGAGCTCATTGTGAACTaGGACAGCCATGTAGCGTGG +
Preference number: 4 (lower is better)
Translates to: ELSQKLRMFMLEISMECSELIVN*DSHVAW
Trigger: CCACGCTACATGGCTGTCGCAGTTCACAATGAGCTC...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp AAACCTAGGAAGCAAATACAAGACAACTGTCGGGATTCAATCCGTATTGCCACCGTTTTTGTGCCAAGATaGTGCCGTCAGTGGAGCGGC +
Preference number: 4 (lower is better)
Translates to: KPRKQIQDNCRDSIRIATVFVPR*CRQWSG
Trigger: GCCGCTCCACTGACGGCACCATCTTGGCACAAAAAC...GGTGGCAATACGGATTGAATCCCGACAGTTGTCTTGTATTTGCTTCCTAGGTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCTCTGCTGACTGTCTCTaGGATCTCAGTGATGCGCCT +
Preference number: 4 (lower is better)
Translates to: ELSQKLRMFMLEISMECSSADCL*DLSDAP
Trigger: AGGCGCATCACTGAGATCCCAGAGACAGTCAGCAGA...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp CTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGTCCATAACTAAAGTCTaGGTTTTGCCAGCCAGGCCA +
Preference number: 4 (lower is better)
Translates to: LEVKGSVLSVLPITTRMQSITKV*VLPARP
Trigger: TGGCCTGGCTGGCAAAACCCAGACTTTAGTTATGGA...CTGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp GGCAAATCTTCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTGCAGTGAACTATCTTTTGGTTTCTaGGACTTAGCTCGGTCTTCC +
Preference number: 4 (lower is better)
Translates to: GKSSVSHTSSRVTLKCSELSFGF*DLARSS
Trigger: GGAAGACCGAGCTAAGTCCCAGAAACCAAAAGATAG...TTCACTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGAAGATTTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp ATTTGGCAAATCTTCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTGCAGATAATCCCAGATTTCTaGGGCTTTCTTGGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: IWQIFCEPHIKQGHPEVQIIPDF*GFLGSS
Trigger: GGAGGAGCCAAGAAAGCCCCAGAAATCTGGGATTAT...CTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGAAGATTTGCCAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp GGGGCAGGGGCAGACTGTCACTATGGTATAATTTGGCAAATCTTCTGTGAGCCAGGTGCTACGACTTTGTaGGGCAGTTCTTCATATTGC +
Preference number: 4 (lower is better)
Translates to: GAGADCHYGIIWQIFCEPGATTL*GSSSYC
Trigger: GCAATATGAAGAACTGCCCCACAAAGTCGTAGCACC...TGGCTCACAGAAGATTTGCCAAATTATACCATAGTGACAGTCTGCCCCTGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR CAA 72 bp CTTAAACAGGCGGAAATGCTAAGCTGTCCTCCAGTGTaGATCTGGCTTTTCATGGCAGAGTCAGCCTTCCTT +
Preference number: 4 (lower is better)
Translates to: LKQAEMLSCPPV*IWLFMAESAFL
Trigger: AAGGAAGGCTGACTCTGCCATGAAAAGCCAGATCAACACTGGAGGACAGCTTAGCATTTCCGCCTGTTTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp ATTTGGCAAATCTTCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTGCAGCGTGATGTTAAGGGCTaGTGGGAGTTATTACTTGAG +
Preference number: 4 (lower is better)
Translates to: IWQIFCEPHIKQGHPEVQRDVKG*WELLLE
Trigger: CTCAAGTAATAACTCCCATCAGCCCTTAACATCACG...CTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGAAGATTTGCCAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp GCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGTCAGAATTTGTGCCAAGATGGTaGCGTCAGTGGAGCGGCTCC +
Preference number: 4 (lower is better)
Translates to: AWILESYFGIAILRAKSEFVPRW*RQWSGS
Trigger: GGAGCCGCTCCACTGACGGCACCATCTTGGCACAAA...TTCTGACTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp GCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGTCAGAAAGCGGCCTGAGCAGTTaGCTCTCTTCAGCTGGTGGA +
Preference number: 4 (lower is better)
Translates to: AWILESYFGIAILRAKSESGLSS*LSSAGG
Trigger: TCCACCAGCTGAAGAGAGCCAACTGCTCAGGCCGCT...TTCTGACTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp GGGGCAGGGGCAGACTGTCACTATGGTATAATTTGGCAAATCTTCTGTGAGCCAACCACCAGTCATGTATaGGATTCTTTGTGCTGTTCG +
Preference number: 4 (lower is better)
Translates to: GAGADCHYGIIWQIFCEPTTSHV*DSLCCS
Trigger: CGAACAGCACAAAGAATCCCATACATGACTGGTGGT...TGGCTCACAGAAGATTTGCCAAATTATACCATAGTGACAGTCTGCCCCTGCCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp ATTTGGCAAATCTTCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTGCAGGTTTGGTCTCTCACATaGTCATATGTGCTGTGGGAT +
Preference number: 4 (lower is better)
Translates to: IWQIFCEPHIKQGHPEVQVWSLT*SYVLWD
Trigger: ATCCCACAGCACATATGACCATGTGAGAGACCAAAC...CTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGAAGATTTGCCAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp GGGGCAGGGGCAGACTGTCACTATGGTATAATTTGGCAAATCTTCTGTGAGCCAGATGTCTGTTTCTCCTaGTCTCCCATTTGGTTGAGA +
Preference number: 4 (lower is better)
Translates to: GAGADCHYGIIWQIFCEPDVCFS*SPIWLR
Trigger: TCTCAACCAAATGGGAGACCAGGAGAAACAGACATC...TGGCTCACAGAAGATTTGCCAAATTATACCATAGTGACAGTCTGCCCCTGCCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCCTGGAAGTTGTTCACTaGGAAGACACGGGGATGATA +
Preference number: 4 (lower is better)
Translates to: ELSQKLRMFMLEISMECSLEVVH*EDTGMI
Trigger: TATCATCCCCGTGTCTTCTCAGTGAACAACTTCCAG...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp GCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGTCAGAATCTGAGCTGAGGTTGTaGGCACTGGCTGACTTGCAG +
Preference number: 4 (lower is better)
Translates to: AWILESYFGIAILRAKSESELRL*ALADLQ
Trigger: CTGCAAGTCAGCCAGTGCTCACAACCTCAGCTCAGA...TTCTGACTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp ATTTGGCAAATCTTCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTGCAGCGAGACTTATTGCTCTaGAACATCATGTTGAGGAAG +
Preference number: 4 (lower is better)
Translates to: IWQIFCEPHIKQGHPEVQRDLLL*NIMLRK
Trigger: CTTCCTCAACATGATGTTGCAGAGCAATAAGTCTCG...CTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGAAGATTTGCCAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCAACCAAGACTATTACTaGCAGCATCCTCATGACCCG +
Preference number: 4 (lower is better)
Translates to: ELSQKLRMFMLEISMECSNQDYY*QHPHDP
Trigger: CGGGTCATGAGGATGCTGGCAGTAATAGTCTTGGTT...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp GGGGCAGGGGCAGACTGTCACTATGGTATAATTTGGCAAATCTTCTGTGAGCCAAGTCAAGTGAGCATGTaGAAAGTACAGCATCAGCAT +
Preference number: 4 (lower is better)
Translates to: GAGADCHYGIIWQIFCEPSQVSM*KVQHQH
Trigger: ATGCTGATGCTGTACTTTGCACATGCTCACTTGACT...TGGCTCACAGAAGATTTGCCAAATTATACCATAGTGACAGTCTGCCCCTGCCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp AAACCTAGGAAGCAAATACAAGACAACTGTCGGGATTCAATCCGTATTGCCACCATAGATGTACGTGGGTaGCCAGGCTTCTTCTCTGAG +
Preference number: 4 (lower is better)
Translates to: KPRKQIQDNCRDSIRIATIDVRG*PGFFSE
Trigger: CTCAGAGAAGAAGCCTGGGCACCCACGTACATCTAT...GGTGGCAATACGGATTGAATCCCGACAGTTGTCTTGTATTTGCTTCCTAGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp AAACCTAGGAAGCAAATACAAGACAACTGTCGGGATTCAATCCGTATTGCCACCGGGAGGCTGACCCTCTaGTGTTTCATAATCCCAGAT +
Preference number: 4 (lower is better)
Translates to: KPRKQIQDNCRDSIRIATGRLTL*CFIIPD
Trigger: ATCTGGGATTATGAAACAGCAGAGGGTCAGCCTCCC...GGTGGCAATACGGATTGAATCCCGACAGTTGTCTTGTATTTGCTTCCTAGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp GGGGCAGGGGCAGACTGTCACTATGGTATAATTTGGCAAATCTTCTGTGAGCCAGGCAGTTCTTCATATTaGCCAGCACACATATTGGTT +
Preference number: 4 (lower is better)
Translates to: GAGADCHYGIIWQIFCEPGSSSY*PAHILV
Trigger: AACCAATATGTGTGCTGGGCAATATGAAGAACTGCC...TGGCTCACAGAAGATTTGCCAAATTATACCATAGTGACAGTCTGCCCCTGCCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp AAGACATTACAACAAGCCATGGTGGGAAACAAAAGAGTCAGACCCAACTTCACTTTTCGCCGAAGCCCATaGAACCACTCGGTCTCTAGA +
Preference number: 4 (lower is better)
Translates to: KTLQQAMVGNKRVRPNFTFRRSP*NHSVSR
Trigger: TCTAGAGACCGAGTGGTTCCATGGGCTTCGGCGAAA...AGTGAAGTTGGGTCTGACTCTTTTGTTTCCCACCATGGCTTGTTGTAATGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR CAA 72 bp ATGCGTCTGTCTTCCATGCCTCCTGGTGAATCTTGCTaGGTACCATTCAATCCCATGTGTAAAGACAGACAG +
Preference number: 4 (lower is better)
Translates to: MRLSSMPPGESC*VPFNPMCKDRQ
Trigger: CTGTCTGTCTTTACACATGGGATTGAATGGTACCAAGCAAGATTCACCAGGAGGCATGGAAGACAGACGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp AAGACATTACAACAAGCCATGGTGGGAAACAAAAGAGTCAGACCCAACTTCACTGACGTGGGTTTCTTCTaGCACATCCTTTGTGCTTCC +
Preference number: 4 (lower is better)
Translates to: KTLQQAMVGNKRVRPNFTDVGFF*HILCAS
Trigger: GGAAGCACAAAGGATGTGTCAGAAGAAACCCACGTC...AGTGAAGTTGGGTCTGACTCTTTTGTTTCCCACCATGGCTTGTTGTAATGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp AAATGTGCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGGAGCACTGGCTGACTTaGAGACCAACGGCACTGACT +
Preference number: 4 (lower is better)
Translates to: KCAWILESYFGIAILRAKEHWLT*RPTALT
Trigger: AGTCAGTGCCGTTGGTCTGCAAGTCAGCCAGTGCTC...CTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGCACATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp CTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGTCCTGGTCTCCCATTTaGTTGAGATTTTCATTCTCT +
Preference number: 4 (lower is better)
Translates to: LEVKGSVLSVLPITTRMQSWSPI*LRFSFS
Trigger: AGAGAATGAAAATCTCAACCAAATGGGAGACCAGGA...CTGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp TTCTCAGCCAGGGAAAAGAGCTTCCAGAATGACAGAGTTCAATTTCTTTTGGTGACTGTCACAGTCAAGTaGGCATGTGCAAAGTACAGC +
Preference number: 4 (lower is better)
Translates to: FSAREKSFQNDRVQFLLVTVTVK*ACAKYS
Trigger: GCTGTACTTTGCACATGCTCACTTGACTGTGACAGT...CACCAAAAGAAATTGAACTCTGTCATTCTGGAAGCTCTTTTCCCTGGCTGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp CTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGCCTCACTATCTTCTTTaGGCTTTTGTGTCAGTTTTT +
Preference number: 4 (lower is better)
Translates to: LEVKGSVLSVLPITTRMQPHYLL*AFVSVF
Trigger: AAAAACTGACACAAAAGCTCAAAGAAGATAGTGAGG...CTGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCGGGATGATAGAACCCTaGTTTGCAAATGCACTGATA +
Preference number: 4 (lower is better)
Translates to: ELSQKLRMFMLEISMECSGMIEP*FANALI
Trigger: TATCAGTGCATTTGCAAAGCAGGGTTCTATCATCCC...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp GCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGTCAGAAAGGGACAGTCCGCACTaGATAGCAGAGATAAATGCC +
Preference number: 4 (lower is better)
Translates to: AWILESYFGIAILRAKSERDSPH*IAEINA
Trigger: GGCATTTATCTCTGCTATGCAGTGCGGACTGTCCCT...TTCTGACTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp TTCTCAGCCAGGGAAAAGAGCTTCCAGAATGACAGAGTTCAATTTCTTTTGGTGTCTCCCTGGGAGAACTaGAGTCTTAGAAATCAGACG +
Preference number: 4 (lower is better)
Translates to: FSAREKSFQNDRVQFLLVSPWEN*SLRNQT
Trigger: CGTCTGATTTCTAAGACTCCAGTTCTCCCAGGGAGA...CACCAAAAGAAATTGAACTCTGTCATTCTGGAAGCTCTTTTCCCTGGCTGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp AAATGTGCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGCTCTCTGGCTCTCCCTaGGAGAACTGGAGTCTTAGA +
Preference number: 4 (lower is better)
Translates to: KCAWILESYFGIAILRAKLSGSP*ENWSLR
Trigger: TCTAAGACTCCAGTTCTCCCAGGGAGAGCCAGAGAG...CTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGCACATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp AAACAGTTCCTATGGATGGAAATGTCTTCGTCACATAAGCAGTTGTTTAGTATTGCTTCTTCTCTGAGCTaGGGTTGTGAGCACTGGCTG +
Preference number: 4 (lower is better)
Translates to: KQFLWMEMSSSHKQLFSIASSLS*GCEHWL
Trigger: CAGCCAGTGCTCACAACCTCAGCTCAGAGAAGAAGC...AATACTAAACAACTGCTTATGTGACGAAGACATTTCCATCCATAGGAACTGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp AAACCTAGGAAGCAAATACAAGACAACTGTCGGGATTCAATCCGTATTGCCACCCTTCTCCTTGGCACTTaGAATGACACTGAGAGATTT +
Preference number: 4 (lower is better)
Translates to: KPRKQIQDNCRDSIRIATLLLGT*NDTERF
Trigger: AAATCTCTCAGTGTCATTGCAAGTGCCAAGGAGAAG...GGTGGCAATACGGATTGAATCCCGACAGTTGTCTTGTATTTGCTTCCTAGGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp AAGACATTACAACAAGCCATGGTGGGAAACAAAAGAGTCAGACCCAACTTCACTGGTCTCTCTATCTTTTaGTTTCTGGGACTTAGCTCG +
Preference number: 4 (lower is better)
Translates to: KTLQQAMVGNKRVRPNFTGLSIF*FLGLSS
Trigger: CGAGCTAAGTCCCAGAAACCAAAAGATAGAGAGACC...AGTGAAGTTGGGTCTGACTCTTTTGTTTCCCACCATGGCTTGTTGTAATGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR CAA 72 bp ATGTTTGTGAGACCTTCACACTGTATGCACTTTCTATaGTTCTCAGCCAGGGAAAAGAGCTTCCAGAATGAC +
Preference number: 4 (lower is better)
Translates to: MFVRPSHCMHFL*FSAREKSFQND
Trigger: GTCATTCTGGAAGCTCTTTTCCCTGGCTGAGAACAATAGAAAGTGCATACAGTGTGAAGGTCTCACAAACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp AAACCTAGGAAGCAAATACAAGACAACTGTCGGGATTCAATCCGTATTGCCACCGGTCTCCCATTTGGTTaGGATTTTCATTCTCTACTT +
Preference number: 4 (lower is better)
Translates to: KPRKQIQDNCRDSIRIATGLPFG*DFHSLL
Trigger: AAGTAGAGAATGAAAATCTCAACCAAATGGGAGACC...GGTGGCAATACGGATTGAATCCCGACAGTTGTCTTGTATTTGCTTCCTAGGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp AAATGTGCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGCTCCTGGACAAAGCATaGACGATCATCAGCACAGAA +
Preference number: 4 (lower is better)
Translates to: KCAWILESYFGIAILRAKLLDKA*TIISTE
Trigger: TTCTGTGCTGATGATCGTCCATGCTTTGTCCAGGAG...CTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGCACATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp GCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGTCAGAAAAATTGTCCTTTATCTaGGTGATACCGGAGCTCACG +
Preference number: 4 (lower is better)
Translates to: AWILESYFGIAILRAKSEKLSFI*VIPELT
Trigger: CGTGAGCTCCGGTATCACCCAGATAAAGGACAATTT...TTCTGACTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp AAACAGTTCCTATGGATGGAAATGTCTTCGTCACATAAGCAGTTGTTTAGTATTTTCCATTCTCCTCTCTaGCTCTCCCTGGGAGAACTG +
Preference number: 4 (lower is better)
Translates to: KQFLWMEMSSSHKQLFSIFHSPL*LSLGEL
Trigger: CAGTTCTCCCAGGGAGAGCCAGAGAGGAGAATGGAA...AATACTAAACAACTGCTTATGTGACGAAGACATTTCCATCCATAGGAACTGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR CAA 72 bp AGAGAAAGCTTACTGTACTCCAAGACTCAACCACACTaGGTAGATGATAGCAGGTATTTGGTAGGTTGCAAT +
Preference number: 4 (lower is better)
Translates to: RESLLYSKTQPH*VDDSRYLVGCN
Trigger: ATTGCAACCTACCAAATACCTGCTATCATCTACCAAGTGTGGTTGAGTCTTGGAGTACAGTAAGCTTTCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR CAA 72 bp AGCAAATACAAGACAACTGTCGGGATTCAATCCGTATaGCCACCGAAGTTTACGAGAGGTCAAGTCATAATT +
Preference number: 4 (lower is better)
Translates to: SKYKTTVGIQSV*PPKFTRGQVII
Trigger: AATTATGACTTGACCTCTCGTAAACTTCGGTGGCAATACGGATTGAATCCCGACAGTTGTCTTGTATTTGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp AAATGTGCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGAAACCCTGTGAAGCTTaGGGGTCACAGTTCCATAAA +
Preference number: 4 (lower is better)
Translates to: KCAWILESYFGIAILRAKKPCEA*GSQFHK
Trigger: TTTATGGAACTGTGACCCTCAAGCTTCACAGGGTTT...CTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGCACATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp AAACAGTTCCTATGGATGGAAATGTCTTCGTCACATAAGCAGTTGTTTAGTATTTCTTCTAAAAGGGACTaGCTGTGGATTTCCCAGGGG +
Preference number: 4 (lower is better)
Translates to: KQFLWMEMSSSHKQLFSISSKRD*LWISQG
Trigger: CCCCTGGGAAATCCACAGTCAGTCCCTTTTAGAAGA...AATACTAAACAACTGCTTATGTGACGAAGACATTTCCATCCATAGGAACTGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp AAATGTGCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGGATAGAACCCTGCTTTaGAAATGCACTGATAGGCTC +
Preference number: 4 (lower is better)
Translates to: KCAWILESYFGIAILRAKDRTLL*KCTDRL
Trigger: GAGCCTATCAGTGCATTTGCAAAGCAGGGTTCTATC...CTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGCACATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp AAACAGTTCCTATGGATGGAAATGTCTTCGTCACATAAGCAGTTGTTTAGTATTCAGGATGAGCCCAGATaGCCTGATGCTCTTTGCTTT +
Preference number: 4 (lower is better)
Translates to: KQFLWMEMSSSHKQLFSIQDEPR*PDALCF
Trigger: AAAGCAAAGAGCATCAGGGCATCTGGGCTCATCCTG...AATACTAAACAACTGCTTATGTGACGAAGACATTTCCATCCATAGGAACTGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp AAATGTGCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGGTAGAGACCTTCAGTTaGCTTAGACTTGTGGTAGGA +
Preference number: 4 (lower is better)
Translates to: KCAWILESYFGIAILRAKVETFS*LRLVVG
Trigger: TCCTACCACAAGTCTAAGGCAACTGAAGGTCTCTAC...CTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGCACATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp GCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGTCAGAATGGTCATATGTGCTGTaGGATTTCTTGAGAGAGAAG +
Preference number: 4 (lower is better)
Translates to: AWILESYFGIAILRAKSEWSYVL*DFLREK
Trigger: CTTCTCTCTCAAGAAATCCCACAGCACATATGACCA...TTCTGACTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp TTCTCAGCCAGGGAAAAGAGCTTCCAGAATGACAGAGTTCAATTTCTTTTGGTGAATTTGAGTACTTCCTaGTGGTCTCTCTATCTTTTG +
Preference number: 4 (lower is better)
Translates to: FSAREKSFQNDRVQFLLVNLSTS*WSLYLL
Trigger: CAAAAGATAGAGAGACCATCAGGAAGTACTCAAATT...CACCAAAAGAAATTGAACTCTGTCATTCTGGAAGCTCTTTTCCCTGGCTGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp TTCTCAGCCAGGGAAAAGAGCTTCCAGAATGACAGAGTTCAATTTCTTTTGGTGCATCTCGGGGATTATTaGTTGAATGTGAAAACTTTG +
Preference number: 4 (lower is better)
Translates to: FSAREKSFQNDRVQFLLVHLGDY*LNVKTL
Trigger: CAAAGTTTTCACATTCAAGCAATAATCCCCGAGATG...CACCAAAAGAAATTGAACTCTGTCATTCTGGAAGCTCTTTTCCCTGGCTGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp AAATGTGCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGTCAGATGTTTGCCCTTaGCCAACAAGCAAAATATCC +
Preference number: 4 (lower is better)
Translates to: KCAWILESYFGIAILRAKSDVCP*PTSKIS
Trigger: GGATATTTTGCTTGTTGGCCAAGGGCAAACATCTGA...CTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGCACATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp AAATGTGCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGTTCATTCTCTACTTTTaGTGCTACGACTTTGTGGGG +
Preference number: 4 (lower is better)
Translates to: KCAWILESYFGIAILRAKFILYF*CYDFVG
Trigger: CCCCACAAAGTCGTAGCACCAAAAGTAGAGAATGAA...CTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGCACATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp AAACAGTTCCTATGGATGGAAATGTCTTCGTCACATAAGCAGTTGTTTAGTATTATCCTTTGTGCTTCCTaGAAAATGGTGATCTGGACC +
Preference number: 4 (lower is better)
Translates to: KQFLWMEMSSSHKQLFSIILCAS*KMVIWT
Trigger: GGTCCAGATCACCATTTTTCAGGAAGCACAAAGGAT...AATACTAAACAACTGCTTATGTGACGAAGACATTTCCATCCATAGGAACTGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp AAACAGTTCCTATGGATGGAAATGTCTTCGTCACATAAGCAGTTGTTTAGTATTTGCTGTGGGATTTCTTaGGAGAGAAGACCCGATTTT +
Preference number: 4 (lower is better)
Translates to: KQFLWMEMSSSHKQLFSICCGIS*ERRPDF
Trigger: AAAATCGGGTCTTCTCTCTCAAGAAATCCCACAGCA...AATACTAAACAACTGCTTATGTGACGAAGACATTTCCATCCATAGGAACTGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR GCA 90 bp GCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGTCAGAACATAGCAGAGATAAATaGCCCACAAGAGGAATAAAA +
Preference number: 4 (lower is better)
Translates to: AWILESYFGIAILRAKSEHSRDK*PTRGIK
Trigger: TTTTATTCCTCTTGTGGGGCATTTATCTCTGCTATG...TTCTGACTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp AAGACATTACAACAAGCCATGGTGGGAAACAAAAGAGTCAGACCCAACTTCACTACAACGAAATGTACTTaGCTCAAAGTACAGAATAAC +
Preference number: 4 (lower is better)
Translates to: KTLQQAMVGNKRVRPNFTTTKCT*LKVQNN
Trigger: GTTATTCTGTACTTTGAGCCAAGTACATTTCGTTGT...AGTGAAGTTGGGTCTGACTCTTTTGTTTCCCACCATGGCTTGTTGTAATGTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp AAACAGTTCCTATGGATGGAAATGTCTTCGTCACATAAGCAGTTGTTTAGTATTGGTGGGGGTTGTTTGTaGTCATCTTTTTACGTTTGT +
Preference number: 4 (lower is better)
Translates to: KQFLWMEMSSSHKQLFSIGGGCL*SSFYVC
Trigger: ACAAACGTAAAAAGATGATCACAAACAACCCCCACC...AATACTAAACAACTGCTTATGTGACGAAGACATTTCCATCCATAGGAACTGTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR TCA 90 bp AAACAGTTCCTATGGATGGAAATGTCTTCGTCACATAAGCAGTTGTTTAGTATTATGGGAGTTATTACTTaGGTTACAGGAGCCAGGAAT +
Preference number: 4 (lower is better)
Translates to: KQFLWMEMSSSHKQLFSIMGVIT*VTGARN
Trigger: ATTCCTGGCTCCTGTAACTCAAGTAATAACTCCCAT...AATACTAAACAACTGCTTATGTGACGAAGACATTTCCATCCATAGGAACTGTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CCA 90 bp AAACAGTTCCTATGGATGGAAATGTCTTCGTCACATAAGCAGTTGTTTAGTATTCTGGATTCTACAGTTTaGTCTCTCACATGGTCATAT +
Preference number: 4 (lower is better)
Translates to: KQFLWMEMSSSHKQLFSILDSTV*SLTWSY
Trigger: ATATGACCATGTGAGAGACCAAACTGTAGAATCCAG...AATACTAAACAACTGCTTATGTGACGAAGACATTTCCATCCATAGGAACTGTTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
3UTR CAA 72 bp GAAAAGAGCTTCCAGAATGACAGAGTTCAATTTCTTTaGGTGATAAGTTATGAAAATGAAGCTCTAGGAAAG +
Preference number: 4 (lower is better)
Translates to: EKSFQNDRVQFL*VISYENEALGK
Trigger: CTTTCCTAGAGCTTCATTTTCATAACTTATCACCAAAAGAAATTGAACTCTGTCATTCTGGAAGCTCTTTTC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 90 bp TGCAGCAGGATGCGACTCTCCTCGCGGGTGGCCTGGAGGAAGACCTaGGGGGCGGGCGTGGACAGCGACTCGGTGCTGAAGGTGATGGCC +
Preference number: 5 (lower is better)
Translates to: CSRMRLSSRVAWRKT*GAGVDSDSVLKVMA
Trigger: GGCCATCACCTTCAGCACCGAGTCGCTGTCCACGCCCGCCCCGCAGGTCTTCCTCCAGGCCACCCGCGAGGAGAGTCGCATCCTGCTGCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 90 bp CTGACCATGCTGCTTCCCCCTCGGAGTCCTCTCTCGAGGGGAATCTaGCCGTCCCGGAGGGTCGAGGCTGGCACCAACCTCTCCCAATCC +
Preference number: 5 (lower is better)
Translates to: LTMLLPPRSPLSRGI*PSRRVEAGTNLSQS
Trigger: GGATTGGGAGAGGTTGGTGCCAGCCTCGACCCTCCGGGACGGCCAGATTCCCCTCGAGAGAGGACTCCGAGGGGGAAGCAGCATGGTCAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 90 bp CAAGATGGTGCCGTCAGTGGAGCGGCTCCAGGGAATAGAGGGGTCTaGGGCAGAGGCTCGCGGCAGCTGCTGACCATGCTGCTTCCCCCT +
Preference number: 5 (lower is better)
Translates to: QDGAVSGAAPGNRGV*GRGSRQLLTMLLPP
Trigger: AGGGGGAAGCAGCATGGTCAGCAGCTGCCGCGAGCCTCTGCCCCAGACCCCTCTATTCCCTGGAGCCGCTCCACTGACGGCACCATCTTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 90 bp GAGTCCTCTCTCGAGGGGAATCTGGCCGTCCCGGAGGGTCGAGGCTaGCACCAACCTCTCCCAATCCCAGATGAGCGAGCAGGAGGCAGA +
Preference number: 5 (lower is better)
Translates to: ESSLEGNLAVPEGRG*HQPLPIPDERAGGR
Trigger: TCTGCCTCCTGCTCGCTCATCTGGGATTGGGAGAGGTTGGTGCCAGCCTCGACCCTCCGGGACGGCCAGATTCCCCTCGAGAGAGGACTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 90 bp CGTGTGTCAGAGTGTCCAGCGCCCCGTGCAAGGAAGGATGGGAGCTaGCTAGGGACGGTGACTTTCCCGGCAGGCCAGCCAACTCGTAGC +
Preference number: 5 (lower is better)
Translates to: RVSECPAPRARKDGS*LGTVTFPAGQPTRS
Trigger: GCTACGAGTTGGCTGGCCTGCCGGGAAAGTCACCGTCCCTAGCCAGCTCCCATCCTTCCTTGCACGGGGCGCTGGACACTCTGACACACG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 90 bp AGCCCATGGAACCACTCGGTCTCTAGAGTGGCGTTAGCCAGGTGGTaGGCGGAGGAGGACAGGTCCTGCAGCAGGATGCGACTCTCCTCG +
Preference number: 5 (lower is better)
Translates to: SPWNHSVSRVALARW*AEEDRSCSRMRLSS
Trigger: CGAGGAGAGTCGCATCCTGCTGCAGGACCTGTCCTCCTCCGCTCACCACCTGGCTAACGCCACTCTAGAGACCGAGTGGTTCCATGGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 90 bp ATGTTGAGGAAGTTGGTGGCGTGTGTCAGAGTGTCCAGCGCCCCGTaGAAGGAAGGATGGGAGCTGGCTAGGGACGGTGACTTTCCCGGC +
Preference number: 5 (lower is better)
Translates to: MLRKLVACVRVSSAP*KEGWELARDGDFPG
Trigger: GCCGGGAAAGTCACCGTCCCTAGCCAGCTCCCATCCTTCCTTGCACGGGGCGCTGGACACTCTGACACACGCCACCAACTTCCTCAACAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 90 bp CGGGAGATGCTGGGCTCACCCTCCAGGAGACTTCGCACCAGAGCCTaGTACCACTGCAGGTCATCCTGCACGGTCTGTTCCCGAGACTTA +
Preference number: 5 (lower is better)
Translates to: REMLGSPSRRLRTRA*YHCRSSCTVCSRDL
Trigger: TAAGTCTCGGGAACAGACCGTGCAGGATGACCTGCAGTGGTACCAGGCTCTGGTGCGAAGTCTCCTGGAGGGTGAGCCCAGCATCTCCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 90 bp CTGGGCTCACCCTCCAGGAGACTTCGCACCAGAGCCTGGTACCACTaGAGGTCATCCTGCACGGTCTGTTCCCGAGACTTATTGCTCTGC +
Preference number: 5 (lower is better)
Translates to: LGSPSRRLRTRAWYH*RSSCTVCSRDLLLC
Trigger: GCAGAGCAATAAGTCTCGGGAACAGACCGTGCAGGATGACCTGCAGTGGTACCAGGCTCTGGTGCGAAGTCTCCTGGAGGGTGAGCCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 90 bp CAGCCACCCAGGCTTGTAACTCCCATTCTCGCACTCCAGATAAGGTaGGGACCACTTGACGTGGCTCCTGTCCCCTCCAAGCCCATCCCT +
Preference number: 5 (lower is better)
Translates to: QPPRLVTPILALQIR*GPLDVAPVPSKPIP
Trigger: AGGGATGGGCTTGGAGGGGACAGGAGCCACGTCAAGTGGTCCCCACCTTATCTGGAGTGCGAGAATGGGAGTTACAAGCCTGGGTGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 90 bp CCTGCACGGTCTGTTCCCGAGACTTATTGCTCTGCAACATCATGTTaGGGAAGTTGGTGGCGTGTGTCAGAGTGTCCAGCGCCCCGTGCA +
Preference number: 5 (lower is better)
Translates to: PARSVPETYCSATSC*GSWWRVSECPAPRA
Trigger: TGCACGGGGCGCTGGACACTCTGACACACGCCACCAACTTCCTCAACATGATGTTGCAGAGCAATAAGTCTCGGGAACAGACCGTGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 90 bp GACCCGATTTTTAAGGGACTCTTCCTTGGGTCTCCCTGTATTCCCTaGGGACTCAGTAGGGTTCTTCCGGACAAGGCCTGTCCCCTTGGC +
Preference number: 5 (lower is better)
Translates to: DPIFKGLFLGSPCIP*GLSRVLPDKACPLG
Trigger: GCCAAGGGGACAGGCCTTGTCCGGAAGAACCCTACTGAGTCCTCAGGGAATACAGGGAGACCCAAGGAAGAGTCCCTTAAAAATCGGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 90 bp ATACCGGAGCTCACGTCAGGATTGGCAGTGGGGAGGCTGACCCTCTaGTGTTTCATAATCCCAGATTTCTGGGGCTTTCTTGGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: IPELTSGLAVGRLTL*CFIIPDFWGFLGSS
Trigger: GGAGGAGCCAAGAAAGCCCCAGAAATCTGGGATTATGAAACAGCAGAGGGTCAGCCTCCCCACTGCCAATCCTGACGTGAGCTCCGGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp GGCAAATCTTCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTGCAGTGAAACAAGGCCTGTCCCCTaGGCTGCACTGTGGTCTGTG +
Preference number: 5 (lower is better)
Translates to: GKSSVSHTSSRVTLKCSETRPVP*AALWSV
Trigger: CACAGACCACAGTGCAGCCAAGGGGACAGGCCTTGT...TTCACTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGAAGATTTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 90 bp TCCAGGAGACTTCGCACCAGAGCCTGGTACCACTGCAGGTCATCCTaGACGGTCTGTTCCCGAGACTTATTGCTCTGCAACATCATGTTG +
Preference number: 5 (lower is better)
Translates to: SRRLRTRAWYHCRSS*TVCSRDLLLCNIML
Trigger: CAACATGATGTTGCAGAGCAATAAGTCTCGGGAACAGACCGTGCAGGATGACCTGCAGTGGTACCAGGCTCTGGTGCGAAGTCTCCTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 90 bp CTTGACAGCGACTCCAAGGTTGAATTTTCGGTGGCCTCCTCCTCCTaGCTCTCCATGGGCAAGCTGCTGGATTCTACAGTTTGGTCTCTC +
Preference number: 5 (lower is better)
Translates to: LDSDSKVEFSVASSS*LSMGKLLDSTVWSL
Trigger: GAGAGACCAAACTGTAGAATCCAGCAGCTTGCCCATGGAGAGCCAGGAGGAGGAGGCCACCGAAAATTCAACCTTGGAGTCGCTGTCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 90 bp CACTGCAGGTCATCCTGCACGGTCTGTTCCCGAGACTTATTGCTCTaGAACATCATGTTGAGGAAGTTGGTGGCGTGTGTCAGAGTGTCC +
Preference number: 5 (lower is better)
Translates to: HCRSSCTVCSRDLLL*NIMLRKLVACVRVS
Trigger: GGACACTCTGACACACGCCACCAACTTCCTCAACATGATGTTGCAGAGCAATAAGTCTCGGGAACAGACCGTGCAGGATGACCTGCAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 90 bp AGAGATAATAGCGAGCCGCAGGTATTTATCCTCCTGGACAAAGCATaGACGATCATCAGCACAGAAGGGGCAGCCTTCTCTGCAGGGCAG +
Preference number: 5 (lower is better)
Translates to: RDNSEPQVFILLDKA*TIISTEGAAFSAGQ
Trigger: CTGCCCTGCAGAGAAGGCTGCCCCTTCTGTGCTGATGATCGTCCATGCTTTGTCCAGGAGGATAAATACCTGCGGCTCGCTATTATCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 90 bp ACCTCCCAAGGGCATACTTCTCCGATATCAAAATTGTCCTTTATCTaGGTGATACCGGAGCTCACGTCAGGATTGGCAGTGGGGAGGCTG +
Preference number: 5 (lower is better)
Translates to: TSQGHTSPISKLSFI*VIPELTSGLAVGRL
Trigger: CAGCCTCCCCACTGCCAATCCTGACGTGAGCTCCGGTATCACCCAGATAAAGGACAATTTTGATATCGGAGAAGTATGCCCTTGGGAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp CTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGATTTCTGGGGCTTTCTaGGCTCCTCCATGTGACCGG +
Preference number: 5 (lower is better)
Translates to: LEVKGSVLSVLPITTRMQISGAF*APPCDR
Trigger: CCGGTCACATGGAGGAGCCAAGAAAGCCCCAGAAAT...CTGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 90 bp GGCTCGAACTCCCAGGGACACACTTCGGCTCGTGATGTTAAGGGCTaGTGGGAGTTATTACTTGAGTTACAGGAGCCAGGAATGATATCC +
Preference number: 5 (lower is better)
Translates to: GSNSQGHTSARDVKG*WELLLELQEPGMIS
Trigger: GGATATCATTCCTGGCTCCTGTAACTCAAGTAATAACTCCCATCAGCCCTTAACATCACGAGCCGAAGTGTGTCCCTGGGAGTTCGAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 90 bp CTCTGCAGGGCAGGCAGACGTGGGTTTCTTCTGACACATCCTTTGTaGTTCCTGAAAAATGGTGATCTGGACCCCTTCTCTGGAAGTTGT +
Preference number: 5 (lower is better)
Translates to: LCRAGRRGFLLTHPL*FLKNGDLDPFSGSC
Trigger: ACAACTTCCAGAGAAGGGGTCCAGATCACCATTTTTCAGGAAGCACAAAGGATGTGTCAGAAGAAACCCACGTCTGCCTGCCCTGCAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 90 bp AGGGCTTGGAAAGAGATAATAGCGAGCCGCAGGTATTTATCCTCCTaGACAAAGCATGGACGATCATCAGCACAGAAGGGGCAGCCTTCT +
Preference number: 5 (lower is better)
Translates to: RAWKEIIASRRYLSS*TKHGRSSAQKGQPS
Trigger: AGAAGGCTGCCCCTTCTGTGCTGATGATCGTCCATGCTTTGTCCAGGAGGATAAATACCTGCGGCTCGCTATTATCTCTTTCCAAGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 90 bp TCCTCCTCCTGGCTCTCCATGGGCAAGCTGCTGGATTCTACAGTTTaGTCTCTCACATGGTCATATGTGCTGTGGGATTTCTTGAGAGAG +
Preference number: 5 (lower is better)
Translates to: SSSWLSMGKLLDSTV*SLTWSYVLWDFLRE
Trigger: CTCTCTCAAGAAATCCCACAGCACATATGACCATGTGAGAGACCAAACTGTAGAATCCAGCAGCTTGCCCATGGAGAGCCAGGAGGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 90 bp CTACGACTTTGTGGGGCAGTTCTTCATATTGCCCAGCACACATATTaGTTGTGTAGAGCTGGCTTCCATTCTCCTCTCTGGCTCTCCCTG +
Preference number: 5 (lower is better)
Translates to: LRLCGAVLHIAQHTY*LCRAGFHSPLWLSL
Trigger: CAGGGAGAGCCAGAGAGGAGAATGGAAGCCAGCTCTACACAACCAATATGTGTGCTGGGCAATATGAAGAACTGCCCCACAAAGTCGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp GGGGCAGGGGCAGACTGTCACTATGGTATAATTTGGCAAATCTTCTGTGAGCCAACTAAAGTCTGGGTTTaGCCAGCCAGGCCAAGTGTC +
Preference number: 5 (lower is better)
Translates to: GAGADCHYGIIWQIFCEPTKVWV*PARPSV
Trigger: GACACTTGGCCTGGCTGGCAAAACCCAGACTTTAGT...TGGCTCACAGAAGATTTGCCAAATTATACCATAGTGACAGTCTGCCCCTGCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp GGCAAATCTTCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTGCAGTGAACAGCATACACAGGGCTaGGAAAGAGATAATAGCGAG +
Preference number: 5 (lower is better)
Translates to: GKSSVSHTSSRVTLKCSEQHTQG*ERDNSE
Trigger: CTCGCTATTATCTCTTTCCAAGCCCTGTGTATGCTG...TTCACTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGAAGATTTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp GCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGTCAGAAGAGCTCACGTCAGGATaGGCAGTGGGGAGGCTGACC +
Preference number: 5 (lower is better)
Translates to: AWILESYFGIAILRAKSEELTSG*AVGRLT
Trigger: GGTCAGCCTCCCCACTGCCAATCCTGACGTGAGCTC...TTCTGACTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 90 bp TCTTTTGGTTTCTGGGACTTAGCTCGGTCTTCCATAACTAAAGTCTaGGTTTTGCCAGCCAGGCCAAGTGTCTTCTCCTTGGCACTTGCA +
Preference number: 5 (lower is better)
Translates to: SFGFWDLARSSITKV*VLPARPSVFSLALA
Trigger: TGCAAGTGCCAAGGAGAAGACACTTGGCCTGGCTGGCAAAACCCAGACTTTAGTTATGGAAGACCGAGCTAAGTCCCAGAAACCAAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 90 bp GCTGACCCTCTGCTGTTTCATAATCCCAGATTTCTGGGGCTTTCTTaGCTCCTCCATGTGACCGGAGTTTGGGATAGTCTCTACATTATC +
Preference number: 5 (lower is better)
Translates to: ADPLLFHNPRFLGLS*LLHVTGVWDSLYII
Trigger: GATAATGTAGAGACTATCCCAAACTCCGGTCACATGGAGGAGCCAAGAAAGCCCCAGAAATCTGGGATTATGAAACAGCAGAGGGTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp CTAGAAGTCAAAGGCAGTGTGTTGTCAGTCCTACCTATCACCACTCGCATGCAGGTGCTGTGGGATTTCTaGAGAGAGAAGACCCGATTT +
Preference number: 5 (lower is better)
Translates to: LEVKGSVLSVLPITTRMQVLWDF*REKTRF
Trigger: AAATCGGGTCTTCTCTCTCAAGAAATCCCACAGCAC...CTGCATGCGAGTGGTGATAGGTAGGACTGACAACACACTGCCTTTGACTTCTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp GGCAAATCTTCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTGCAGTGAAGCTGGATTCTACAGTTaGGTCTCTCACATGGTCATA +
Preference number: 5 (lower is better)
Translates to: GKSSVSHTSSRVTLKCSEAGFYS*VSHMVI
Trigger: TATGACCATGTGAGAGACCAAACTGTAGAATCCAGC...TTCACTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGAAGATTTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp ATTTGGCAAATCTTCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTGCAGAAACGAAGCAGGGTTTaGTTCCACTTCAGAAGCTGC +
Preference number: 5 (lower is better)
Translates to: IWQIFCEPHIKQGHPEVQKRSRV*FHFRSC
Trigger: GCAGCTTCTGAAGTGGAACAAAACCCTGCTTCGTTT...CTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGAAGATTTGCCAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 90 bp CTCTCCATGGGCAAGCTGCTGGATTCTACAGTTTGGTCTCTCACATaGTCATATGTGCTGTGGGATTTCTTGAGAGAGAAGACCCGATTT +
Preference number: 5 (lower is better)
Translates to: LSMGKLLDSTVWSLT*SYVLWDFLREKTRF
Trigger: AAATCGGGTCTTCTCTCTCAAGAAATCCCACAGCACATATGACCATGTGAGAGACCAAACTGTAGAATCCAGCAGCTTGCCCATGGAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCACGAATCCCAGGCCTTaGATTGGCATACACTCTGAG +
Preference number: 5 (lower is better)
Translates to: ELSQKLRMFMLEISMECSTNPRP*IGIHSE
Trigger: CTCAGAGTGTATGCCAATCAAAGGCCTGGGATTCGT...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 90 bp CCTGAAAACCAGCCATCACTCGAACATTGGTCAATGTCCACTTTCTaGAGGCTTATATCAACTTTCATCACACCCCTGAATTCCGGGACC +
Preference number: 5 (lower is better)
Translates to: PENQPSLEHWSMSTF*RLISTFITPLNSGT
Trigger: GGTCCCGGAATTCAGGGGTGTGATGAAAGTTGATATAAGCCTTCAGAAAGTGGACATTGACCAATGTTCGAGTGATGGCTGGTTTTCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 90 bp ACTGGAGTCTTAGAAATCAGACGATTCTCATCTTCTAAAAGGGACTaGCTGTGGATTTCCCAGGGGCACACCTCTGTCTTGTCTATGCTC +
Preference number: 5 (lower is better)
Translates to: TGVLEIRRFSSSKRD*LWISQGHTSVLSML
Trigger: GAGCATAGACAAGACAGAGGTGTGCCCCTGGGAAATCCACAGTCAGTCCCTTTTAGAAGATGAGAATCGTCTGATTTCTAAGACTCCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 90 bp AGAAGTCCAGCCAACAAGAAACCAAAACACAACCAAGACTATTACTaGCAGCATCCTCATGACCCGACCACCAGTCATGTATGGGATTCT +
Preference number: 5 (lower is better)
Translates to: RSPANKKPKHNQDYY*QHPHDPTTSHVWDS
Trigger: AGAATCCCATACATGACTGGTGGTCGGGTCATGAGGATGCTGGCAGTAATAGTCTTGGTTGTGTTTTGGTTTCTTGTTGGCTGGACTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp AAACCTAGGAAGCAAATACAAGACAACTGTCGGGATTCAATCCGTATTGCCACCATCATGTTGAGGAAGTaGGTGGCGTGTGTCAGAGTG +
Preference number: 5 (lower is better)
Translates to: KPRKQIQDNCRDSIRIATIMLRK*VACVRV
Trigger: CACTCTGACACACGCCACCAACTTCCTCAACATGAT...GGTGGCAATACGGATTGAATCCCGACAGTTGTCTTGTATTTGCTTCCTAGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCGCCATCACTCGAACATaGGTCAATGTCCACTTTCTG +
Preference number: 5 (lower is better)
Translates to: ELSQKLRMFMLEISMECSAITRT*VNVHFL
Trigger: CAGAAAGTGGACATTGACCAATGTTCGAGTGATGGC...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp AAGACATTACAACAAGCCATGGTGGGAAACAAAAGAGTCAGACCCAACTTCACTCCCCTTCTCTGGAAGTaGTTCACTGAGAAGACACGG +
Preference number: 5 (lower is better)
Translates to: KTLQQAMVGNKRVRPNFTPLLWK*FTEKTR
Trigger: CCGTGTCTTCTCAGTGAACAACTTCCAGAGAAGGGG...AGTGAAGTTGGGTCTGACTCTTTTGTTTCCCACCATGGCTTGTTGTAATGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp GGGGCAGGGGCAGACTGTCACTATGGTATAATTTGGCAAATCTTCTGTGAGCCAATCAGATGTTTGCCCTaGGCCAACAAGCAAAATATC +
Preference number: 5 (lower is better)
Translates to: GAGADCHYGIIWQIFCEPIRCLP*ANKQNI
Trigger: GATATTTTGCTTGTTGGCCAAGGGCAAACATCTGAT...TGGCTCACAGAAGATTTGCCAAATTATACCATAGTGACAGTCTGCCCCTGCCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 90 bp AGGCCTTTGATTGGCATACACTCTGAGTTGTTAAGGTGGCATTTGTaGGTTCCTGAAAACCAGCCATCACTCGAACATTGGTCAATGTCC +
Preference number: 5 (lower is better)
Translates to: RPLIGIHSELLRWHL*VPENQPSLEHWSMS
Trigger: GGACATTGACCAATGTTCGAGTGATGGCTGGTTTTCAGGAACTCACAAATGCCACCTTAACAACTCAGAGTGTATGCCAATCAAAGGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 90 bp GATGTTTGCCCTTGGCCAACAAGCAAAATATCCCGCTCCAAATTCTaGCACATAGAAGAAGTCCAGCCAACAAGAAACCAAAACACAACC +
Preference number: 5 (lower is better)
Translates to: DVCPWPTSKISRSKF*HIEEVQPTRNQNTT
Trigger: GGTTGTGTTTTGGTTTCTTGTTGGCTGGACTTCTTCTATGTGCCAGAATTTGGAGCGGGATATTTTGCTTGTTGGCCAAGGGCAAACATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCGATGGGAGTTATTACTaGAGTTACAGGAGCCAGGAA +
Preference number: 5 (lower is better)
Translates to: ELSQKLRMFMLEISMECSDGSYY*SYRSQE
Trigger: TTCCTGGCTCCTGTAACTCAAGTAATAACTCCCATC...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 90 bp TTAAGGGCTGATGGGAGTTATTACTTGAGTTACAGGAGCCAGGAATaGTATCCACAGAGGAAGATGTCTGTTTCTCCTGGTCTCCCATTT +
Preference number: 5 (lower is better)
Translates to: LRADGSYYLSYRSQE*YPQRKMSVSPGLPF
Trigger: AAATGGGAGACCAGGAGAAACAGACATCTTCCTCTGTGGATATCATTCCTGGCTCCTGTAACTCAAGTAATAACTCCCATCAGCCCTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 90 bp CAGGAGCCAGGAATGATATCCACAGAGGAAGATGTCTGTTTCTCCTaGTCTCCCATTTGGTTGAGATTTTCATTCTCTACTTTTGGTGCT +
Preference number: 5 (lower is better)
Translates to: QEPGMISTEEDVCFS*SPIWLRFSFSTFGA
Trigger: AGCACCAAAAGTAGAGAATGAAAATCTCAACCAAATGGGAGACCAGGAGAAACAGACATCTTCCTCTGTGGATATCATTCCTGGCTCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp ATTTGGCAAATCTTCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTGCAGTCATCTCGGGGATTATaGCTTGAATGTGAAAACTTT +
Preference number: 5 (lower is better)
Translates to: IWQIFCEPHIKQGHPEVQSSRGL*LECENF
Trigger: AAAGTTTTCACATTCAAGCAATAATCCCCGAGATGA...CTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGAAGATTTGCCAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp ATTTGGCAAATCTTCTGTGAGCCACACATCAAGCAGGGTCACCCTGAAGTGCAGTCTCCGATATCAAAATaGTCCTTTATCTGGGTGATA +
Preference number: 5 (lower is better)
Translates to: IWQIFCEPHIKQGHPEVQSPISK*SFIWVI
Trigger: TATCACCCAGATAAAGGACAATTTTGATATCGGAGA...CTGCACTTCAGGGTGACCCTGCTTGATGTGTGGCTCACAGAAGATTTGCCAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCCTTCAGAAGCTGCGATaGATACGTGTTTTTGAGCTT +
Preference number: 5 (lower is better)
Translates to: ELSQKLRMFMLEISMECSLQKLR*IRVFEL
Trigger: AAGCTCAAAAACACGTATCAATCGCAGCTTCTGAAG...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 90 bp TGTTTCATAATCCCAGATTTCTGGGGCTTTCTTGGCTCCTCCATGTaGCCGGAGTTTGGGATAGTCTCTACATTATCTGAATTTGAGTAC +
Preference number: 5 (lower is better)
Translates to: CFIIPDFWGFLGSSM*PEFGIVSTLSEFEY
Trigger: GTACTCAAATTCAGATAATGTAGAGACTATCCCAAACTCCGGTCACATGGAGGAGCCAAGAAAGCCCCAGAAATCTGGGATTATGAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 90 bp CATGAAATGCTGAAGGGACAGTCCGCACTGCATAGCAGAGATAAATaGCCCACAAGAGGAATAAAAATTCAGCAACTGCTGTCATGTAAT +
Preference number: 5 (lower is better)
Translates to: HEMLKGQSALHSRDK*PTRGIKIQQLLSCN
Trigger: ATTACATGACAGCAGTTGCTGAATTTTTATTCCTCTTGTGGGGCATTTATCTCTGCTATGCAGTGCGGACTGTCCCTTCAGCATTTCATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp AAATGTGCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGTTAAGGGACTCTTCCTaGGGTCTCCCTGTATTCCCT +
Preference number: 5 (lower is better)
Translates to: KCAWILESYFGIAILRAKLRDSS*GLPVFP
Trigger: AGGGAATACAGGGAGACCCAAGGAAGAGTCCCTTAA...CTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGCACATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp GAGCTAAGTCAGAAGCTCAGGATGTTTATGCTAGAGATCAGCATGGAATGCAGCGCCTCACTATCTTCTTaGAGCTTTTGTGTCAGTTTT +
Preference number: 5 (lower is better)
Translates to: ELSQKLRMFMLEISMECSASLSS*SFCVSF
Trigger: AAAACTGACACAAAAGCTCAAAGAAGATAGTGAGGC...GCTGCATTCCATGCTGATCTCTAGCATAAACATCCTGAGCTTCTGACTTAGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp GCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGTCAGAAGGGCAGTTCTTCATATaGCCCAGCACACATATTGGT +
Preference number: 5 (lower is better)
Translates to: AWILESYFGIAILRAKSEGQFFI*PSTHIG
Trigger: ACCAATATGTGTGCTGGGCAATATGAAGAACTGCCC...TTCTGACTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp GCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGTCAGAAGCCCTGGTATCTTATTaGCACTTAAAGCAGAGGAGG +
Preference number: 5 (lower is better)
Translates to: AWILESYFGIAILRAKSEALVSY*HLKQRR
Trigger: CCTCCTCTGCTTTAAGTGCAAATAAGATACCAGGGC...TTCTGACTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 90 bp TATTGCTTGAATGTGAAAACTTTGGAATTAGAAGCAGCCCAATGGTaGCTGTCACAGTCAAGTGAGCATGTGCAAAGTACAGCATCAGCA +
Preference number: 5 (lower is better)
Translates to: YCLNVKTLELEAAQW*LSQSSEHVQSTASA
Trigger: TGCTGATGCTGTACTTTGCACATGCTCACTTGACTGTGACAGTCACCATTGGGCTGCTTCTAATTCCAAAGTTTTCACATTCAAGCAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp AAACAGTTCCTATGGATGGAAATGTCTTCGTCACATAAGCAGTTGTTTAGTATTTGGTCTGTGCCTTCCTaGTCCTCTTTGGAGCACTGT +
Preference number: 5 (lower is better)
Translates to: KQFLWMEMSSSHKQLFSIWSVPS*SSLEHC
Trigger: ACAGTGCTCCAAAGAGGACAAGGAAGGCACAGACCA...AATACTAAACAACTGCTTATGTGACGAAGACATTTCCATCCATAGGAACTGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp AAATGTGCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGCTCCTGGTCTCCCATTaGGTTGAGATTTTCATTCTC +
Preference number: 5 (lower is better)
Translates to: KCAWILESYFGIAILRAKLLVSH*VEIFIL
Trigger: GAGAATGAAAATCTCAACCAAATGGGAGACCAGGAG...CTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGCACATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp AAACAGTTCCTATGGATGGAAATGTCTTCGTCACATAAGCAGTTGTTTAGTATTCGCTTCTTTCAGCATTaGGTTGTTCTAGGGGCTCGA +
Preference number: 5 (lower is better)
Translates to: KQFLWMEMSSSHKQLFSIRFFQH*VVLGAR
Trigger: TCGAGCCCCTAGAACAACCAAATGCTGAAAGAAGCG...AATACTAAACAACTGCTTATGTGACGAAGACATTTCCATCCATAGGAACTGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp GCCTGGATTTTAGAGTCTTATTTCGGCATTGCAATCCTTAGAGCTAAGTCAGAATTGAATGTGAAAACTTaGGAATTAGAAGCAGCCCAA +
Preference number: 5 (lower is better)
Translates to: AWILESYFGIAILRAKSELNVKT*ELEAAQ
Trigger: TTGGGCTGCTTCTAATTCCAAAGTTTTCACATTCAA...TTCTGACTTAGCTCTAAGGATTGCAATGCCGAAATAAGACTCTAAAATCCAGGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS-3UTR CAA 90 bp AAACAGTTCCTATGGATGGAAATGTCTTCGTCACATAAGCAGTTGTTTAGTATTTTTGGTGCTACGACTTaGTGGGGCAGTTCTTCATAT +
Preference number: 5 (lower is better)
Translates to: KQFLWMEMSSSHKQLFSIFGATT*WGSSSY
Trigger: ATATGAAGAACTGCCCCACAAAGTCGTAGCACCAAA...AATACTAAACAACTGCTTATGTGACGAAGACATTTCCATCCATAGGAACTGTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 72 bp ATGCGACTCTCCTCGCGGGTGGCCTGGAGGAAGACCTaGGGGGCGGGCGTGGACAGCGACTCGGTGCTGAAG +
Preference number: 6 (lower is better)
Translates to: MRLSSRVAWRKT*GAGVDSDSVLK
Trigger: CTTCAGCACCGAGTCGCTGTCCACGCCCGCCCCGCAGGTCTTCCTCCAGGCCACCCGCGAGGAGAGTCGCAT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp ACAGGTCCTGCAGCAGGATGCGACTCTCCTCGCGGGTaGCCTGGAGGAAGACCTGCGGGGCGGGCGTGGACA +
Preference number: 6 (lower is better)
Translates to: TGPAAGCDSPRG*PGGRPAGRAWT
Trigger: TGTCCACGCCCGCCCCGCAGGTCTTCCTCCAGGCCACCCGCGAGGAGAGTCGCATCCTGCTGCAGGACCTGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp CTGCTTCCCCCTCGGAGTCCTCTCTCGAGGGGAATCTaGCCGTCCCGGAGGGTCGAGGCTGGCACCAACCTC +
Preference number: 6 (lower is better)
Translates to: LLPPRSPLSRGI*PSRRVEAGTNL
Trigger: GAGGTTGGTGCCAGCCTCGACCCTCCGGGACGGCCAGATTCCCCTCGAGAGAGGACTCCGAGGGGGAAGCAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp GCCGTCAGTGGAGCGGCTCCAGGGAATAGAGGGGTCTaGGGCAGAGGCTCGCGGCAGCTGCTGACCATGCTG +
Preference number: 6 (lower is better)
Translates to: AVSGAAPGNRGV*GRGSRQLLTML
Trigger: CAGCATGGTCAGCAGCTGCCGCGAGCCTCTGCCCCAGACCCCTCTATTCCCTGGAGCCGCTCCACTGACGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp GAGTGTCCAGCGCCCCGTGCAAGGAAGGATGGGAGCTaGCTAGGGACGGTGACTTTCCCGGCAGGCCAGCCA +
Preference number: 6 (lower is better)
Translates to: ECPAPRARKDGS*LGTVTFPAGQP
Trigger: TGGCTGGCCTGCCGGGAAAGTCACCGTCCCTAGCCAGCTCCCATCCTTCCTTGCACGGGGCGCTGGACACTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp CTCGAGGGGAATCTGGCCGTCCCGGAGGGTCGAGGCTaGCACCAACCTCTCCCAATCCCAGATGAGCGAGCA +
Preference number: 6 (lower is better)
Translates to: LEGNLAVPEGRG*HQPLPIPDERA
Trigger: TGCTCGCTCATCTGGGATTGGGAGAGGTTGGTGCCAGCCTCGACCCTCCGGGACGGCCAGATTCCCCTCGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp CTGGGCTCACCCTCCAGGAGACTTCGCACCAGAGCCTaGTACCACTGCAGGTCATCCTGCACGGTCTGTTCC +
Preference number: 6 (lower is better)
Translates to: LGSPSRRLRTRA*YHCRSSCTVCS
Trigger: GGAACAGACCGTGCAGGATGACCTGCAGTGGTACCAGGCTCTGGTGCGAAGTCTCCTGGAGGGTGAGCCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 72 bp TCCCATTCTCGCACTCCAGATAAGGTGGGGACCACTTaGCGTGGCTCCTGTCCCCTCCAAGCCCATCCCTGC +
Preference number: 6 (lower is better)
Translates to: SHSRTPDKVGTT*RGSCPLQAHPC
Trigger: GCAGGGATGGGCTTGGAGGGGACAGGAGCCACGTCAAGTGGTCCCCACCTTATCTGGAGTGCGAGAATGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 90 bp CCTGTCCCCTTGGCTGCACTGTGGTCTGTGCCTTCCTTGTCCTCTTaGGAGCACTGTCTGCTGACTGTCTCTGGGATCTCAGTGATGCGC +
Preference number: 6 (lower is better)
Translates to: PVPLAALWSVPSLSS*EHCLLTVSGISVMR
Trigger: GCGCATCACTGAGATCCCAGAGACAGTCAGCAGACAGTGCTCCAAAGAGGACAAGGAAGGCACAGACCACAGTGCAGCCAAGGGGACAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 90 bp TCCTGCACGGTCTGTTCCCGAGACTTATTGCTCTGCAACATCATGTaGAGGAAGTTGGTGGCGTGTGTCAGAGTGTCCAGCGCCCCGTGC +
Preference number: 6 (lower is better)
Translates to: SCTVCSRDLLLCNIM*RKLVACVRVSSAPC
Trigger: GCACGGGGCGCTGGACACTCTGACACACGCCACCAACTTCCTCAACATGATGTTGCAGAGCAATAAGTCTCGGGAACAGACCGTGCAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 72 bp CTTCGCACCAGAGCCTGGTACCACTGCAGGTCATCCTaGACGGTCTGTTCCCGAGACTTATTGCTCTGCAAC +
Preference number: 6 (lower is better)
Translates to: LRTRAWYHCRSS*TVCSRDLLLCN
Trigger: GTTGCAGAGCAATAAGTCTCGGGAACAGACCGTGCAGGATGACCTGCAGTGGTACCAGGCTCTGGTGCGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 72 bp AGTAGGGTTCTTCCGGACAAGGCCTGTCCCCTTGGCTaGACTGTGGTCTGTGCCTTCCTTGTCCTCTTTGGA +
Preference number: 6 (lower is better)
Translates to: SRVLPDKACPLG*TVVCAFLVLFG
Trigger: TCCAAAGAGGACAAGGAAGGCACAGACCACAGTGCAGCCAAGGGGACAGGCCTTGTCCGGAAGAACCCTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp AGGCTTGTAACTCCCATTCTCGCACTCCAGATAAGGTaGGGACCACTTGACGTGGCTCCTGTCCCCTCCAAG +
Preference number: 6 (lower is better)
Translates to: RLVTPILALQIR*GPLDVAPVPSK
Trigger: CTTGGAGGGGACAGGAGCCACGTCAAGTGGTCCCCACCTTATCTGGAGTGCGAGAATGGGAGTTACAAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp TTCTTCCGGACAAGGCCTGTCCCCTTGGCTGCACTGTaGTCTGTGCCTTCCTTGTCCTCTTTGGAGCACTGT +
Preference number: 6 (lower is better)
Translates to: FFRTRPVPLAAL*SVPSLSSLEHC
Trigger: ACAGTGCTCCAAAGAGGACAAGGAAGGCACAGACCACAGTGCAGCCAAGGGGACAGGCCTTGTCCGGAAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 90 bp GTCTGTTCCCGAGACTTATTGCTCTGCAACATCATGTTGAGGAAGTaGGTGGCGTGTGTCAGAGTGTCCAGCGCCCCGTGCAAGGAAGGA +
Preference number: 6 (lower is better)
Translates to: VCSRDLLLCNIMLRK*VACVRVSSAPCKEG
Trigger: TCCTTCCTTGCACGGGGCGCTGGACACTCTGACACACGCCACCAACTTCCTCAACATGATGTTGCAGAGCAATAAGTCTCGGGAACAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 90 bp TATATCAACTTTCATCACACCCCTGAATTCCGGGACCAGGTTAGGTaGAAGCCCGTAGAAGGCAGCAGAGAGCGTGACCAGCCACCCAGG +
Preference number: 6 (lower is better)
Translates to: YINFHHTPEFRDQVR*KPVEGSRERDQPPR
Trigger: CCTGGGTGGCTGGTCACGCTCTCTGCTGCCTTCTACGGGCTTCAACCTAACCTGGTCCCGGAATTCAGGGGTGTGATGAAAGTTGATATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp AGCGAGCCGCAGGTATTTATCCTCCTGGACAAAGCATaGACGATCATCAGCACAGAAGGGGCAGCCTTCTCT +
Preference number: 6 (lower is better)
Translates to: SEPQVFILLDKA*TIISTEGAAFS
Trigger: AGAGAAGGCTGCCCCTTCTGTGCTGATGATCGTCCATGCTTTGTCCAGGAGGATAAATACCTGCGGCTCGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp TGGCCTCCTCCTCCTGGCTCTCCATGGGCAAGCTGCTaGATTCTACAGTTTGGTCTCTCACATGGTCATATG +
Preference number: 6 (lower is better)
Translates to: WPPPPGSPWASC*ILQFGLSHGHM
Trigger: CATATGACCATGTGAGAGACCAAACTGTAGAATCCAGCAGCTTGCCCATGGAGAGCCAGGAGGAGGAGGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp GACTCCAAGGTTGAATTTTCGGTGGCCTCCTCCTCCTaGCTCTCCATGGGCAAGCTGCTGGATTCTACAGTT +
Preference number: 6 (lower is better)
Translates to: DSKVEFSVASSS*LSMGKLLDSTV
Trigger: AACTGTAGAATCCAGCAGCTTGCCCATGGAGAGCCAGGAGGAGGAGGCCACCGAAAATTCAACCTTGGAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp TTTTACTTGACAGCGACTCCAAGGTTGAATTTTCGGTaGCCTCCTCCTCCTGGCTCTCCATGGGCAAGCTGC +
Preference number: 6 (lower is better)
Translates to: FYLTATPRLNFR*PPPPGSPWASC
Trigger: GCAGCTTGCCCATGGAGAGCCAGGAGGAGGAGGCCACCGAAAATTCAACCTTGGAGTCGCTGTCAAGTAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 72 bp TCCTTTATCTGGGTGATACCGGAGCTCACGTCAGGATaGGCAGTGGGGAGGCTGACCCTCTGCTGTTTCATA +
Preference number: 6 (lower is better)
Translates to: SFIWVIPELTSG*AVGRLTLCCFI
Trigger: TATGAAACAGCAGAGGGTCAGCCTCCCCACTGCCAATCCTGACGTGAGCTCCGGTATCACCCAGATAAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 72 bp TTTAAGGGACTCTTCCTTGGGTCTCCCTGTATTCCCTaGGGACTCAGTAGGGTTCTTCCGGACAAGGCCTGT +
Preference number: 6 (lower is better)
Translates to: FKGLFLGSPCIP*GLSRVLPDKAC
Trigger: ACAGGCCTTGTCCGGAAGAACCCTACTGAGTCCTCAGGGAATACAGGGAGACCCAAGGAAGAGTCCCTTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 72 bp CAGCCCAATGGTGACTGTCACAGTCAAGTGAGCATGTaGAAAGTACAGCATCAGCATCCAGTCGGGCTGAAG +
Preference number: 6 (lower is better)
Translates to: QPNGDCHSQVSM*KVQHQHPVGLK
Trigger: CTTCAGCCCGACTGGATGCTGATGCTGTACTTTGCACATGCTCACTTGACTGTGACAGTCACCATTGGGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 72 bp CTCACGTCAGGATTGGCAGTGGGGAGGCTGACCCTCTaGTGTTTCATAATCCCAGATTTCTGGGGCTTTCTT +
Preference number: 6 (lower is better)
Translates to: LTSGLAVGRLTL*CFIIPDFWGFL
Trigger: AAGAAAGCCCCAGAAATCTGGGATTATGAAACAGCAGAGGGTCAGCCTCCCCACTGCCAATCCTGACGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 90 bp TGGTACCACTGCAGGTCATCCTGCACGGTCTGTTCCCGAGACTTATaGCTCTGCAACATCATGTTGAGGAAGTTGGTGGCGTGTGTCAGA +
Preference number: 6 (lower is better)
Translates to: WYHCRSSCTVCSRDL*LCNIMLRKLVACVR
Trigger: TCTGACACACGCCACCAACTTCCTCAACATGATGTTGCAGAGCAATAAGTCTCGGGAACAGACCGTGCAGGATGACCTGCAGTGGTACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 90 bp CGACTTTGTGGGGCAGTTCTTCATATTGCCCAGCACACATATTGGTaGTGTAGAGCTGGCTTCCATTCTCCTCTCTGGCTCTCCCTGGGA +
Preference number: 6 (lower is better)
Translates to: RLCGAVLHIAQHTYW*CRAGFHSPLWLSLG
Trigger: TCCCAGGGAGAGCCAGAGAGGAGAATGGAAGCCAGCTCTACACAACCAATATGTGTGCTGGGCAATATGAAGAACTGCCCCACAAAGTCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 90 bp CTTCTCTGCAGGGCAGGCAGACGTGGGTTTCTTCTGACACATCCTTaGTGCTTCCTGAAAAATGGTGATCTGGACCCCTTCTCTGGAAGT +
Preference number: 6 (lower is better)
Translates to: LLCRAGRRGFLLTHP*CFLKNGDLDPFSGS
Trigger: ACTTCCAGAGAAGGGGTCCAGATCACCATTTTTCAGGAAGCACAAAGGATGTGTCAGAAGAAACCCACGTCTGCCTGCCCTGCAGAGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 90 bp GTAGACCACCAGCATGCTGACAAAGTCCAGCAGCATACACAGGGCTaGGAAAGAGATAATAGCGAGCCGCAGGTATTTATCCTCCTGGAC +
Preference number: 6 (lower is better)
Translates to: VDHQHADKVQQHTQG*ERDNSEPQVFILLD
Trigger: GTCCAGGAGGATAAATACCTGCGGCTCGCTATTATCTCTTTCCAAGCCCTGTGTATGCTGCTGGACTTTGTCAGCATGCTGGTGGTCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 90 bp CACTTAAAGCAGAGGAGGCAGGTAAAGTTACGCTTCTTTCAGCATTaGGTTGTTCTAGGGGCTCGAACTCCCAGGGACACACTTCGGCTC +
Preference number: 6 (lower is better)
Translates to: HLKQRRQVKLRFFQH*VVLGARTPRDTLRL
Trigger: GAGCCGAAGTGTGTCCCTGGGAGTTCGAGCCCCTAGAACAACCAAATGCTGAAAGAAGCGTAACTTTACCTGCCTCCTCTGCTTTAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 72 bp TCCCAGGGACACACTTCGGCTCGTGATGTTAAGGGCTaGTGGGAGTTATTACTTGAGTTACAGGAGCCAGGA +
Preference number: 6 (lower is better)
Translates to: SQGHTSARDVKG*WELLLELQEPG
Trigger: TCCTGGCTCCTGTAACTCAAGTAATAACTCCCATCAGCCCTTAACATCACGAGCCGAAGTGTGTCCCTGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 72 bp GTCTGTTCCCGAGACTTATTGCTCTGCAACATCATGTaGAGGAAGTTGGTGGCGTGTGTCAGAGTGTCCAGC +
Preference number: 6 (lower is better)
Translates to: VCSRDLLLCNIM*RKLVACVRVSS
Trigger: GCTGGACACTCTGACACACGCCACCAACTTCCTCAACATGATGTTGCAGAGCAATAAGTCTCGGGAACAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 72 bp GGGGCAGTTCTTCATATTGCCCAGCACACATATTGGTaGTGTAGAGCTGGCTTCCATTCTCCTCTCTGGCTC +
Preference number: 6 (lower is better)
Translates to: GAVLHIAQHTYW*CRAGFHSPLWL
Trigger: GAGCCAGAGAGGAGAATGGAAGCCAGCTCTACACAACCAATATGTGTGCTGGGCAATATGAAGAACTGCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 72 bp CAGAGGAGGCAGGTAAAGTTACGCTTCTTTCAGCATTaGGTTGTTCTAGGGGCTCGAACTCCCAGGGACACA +
Preference number: 6 (lower is better)
Translates to: QRRQVKLRFFQH*VVLGARTPRDT
Trigger: TGTGTCCCTGGGAGTTCGAGCCCCTAGAACAACCAAATGCTGAAAGAAGCGTAACTTTACCTGCCTCCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 90 bp TGGGATTTCTTGAGAGAGAAGACCCGATTTTTAAGGGACTCTTCCTaGGGTCTCCCTGTATTCCCTGAGGACTCAGTAGGGTTCTTCCGG +
Preference number: 6 (lower is better)
Translates to: WDFLREKTRFLRDSS*GLPVFPEDSVGFFR
Trigger: CCGGAAGAACCCTACTGAGTCCTCAGGGAATACAGGGAGACCCAAGGAAGAGTCCCTTAAAAATCGGGTCTTCTCTCTCAAGAAATCCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 90 bp TCAAAATTGTCCTTTATCTGGGTGATACCGGAGCTCACGTCAGGATaGGCAGTGGGGAGGCTGACCCTCTGCTGTTTCATAATCCCAGAT +
Preference number: 6 (lower is better)
Translates to: SKLSFIWVIPELTSG*AVGRLTLCCFIIPD
Trigger: ATCTGGGATTATGAAACAGCAGAGGGTCAGCCTCCCCACTGCCAATCCTGACGTGAGCTCCGGTATCACCCAGATAAAGGACAATTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 72 bp ATGGTGATCTGGACCCCTTCTCTGGAAGTTGTTCACTaGGAAGACACGGGGATGATAGAACCCTGCTTTGCA +
Preference number: 6 (lower is better)
Translates to: MVIWTPSLEVVH*EDTGMIEPCFA
Trigger: TGCAAAGCAGGGTTCTATCATCCCCGTGTCTTCTCAGTGAACAACTTCCAGAGAAGGGGTCCAGATCACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 72 bp AACTGCGACAGCCATGTAGCGTGGCTCATGAAATGCTaGAGGGACAGTCCGCACTGCATAGCAGAGATAAAT +
Preference number: 6 (lower is better)
Translates to: NCDSHVAWLMKC*RDSPHCIAEIN
Trigger: ATTTATCTCTGCTATGCAGTGCGGACTGTCCCTTCAGCATTTCATGAGCCACGCTACATGGCTGTCGCAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 72 bp GCAGGCAGACGTGGGTTTCTTCTGACACATCCTTTGTaGTTCCTGAAAAATGGTGATCTGGACCCCTTCTCT +
Preference number: 6 (lower is better)
Translates to: AGRRGFLLTHPL*FLKNGDLDPFS
Trigger: AGAGAAGGGGTCCAGATCACCATTTTTCAGGAAGCACAAAGGATGTGTCAGAAGAAACCCACGTCTGCCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 72 bp TGTGGATTTCCCAGGGGCACACCTCTGTCTTGTCTATaGTCTTGTGATTGGCTTGGTAGAGACCTTCAGTTG +
Preference number: 6 (lower is better)
Translates to: CGFPRGTPLSCL*SCDWLGRDLQL
Trigger: CAACTGAAGGTCTCTACCAAGCCAATCACAAGAGCATAGACAAGACAGAGGTGTGCCCCTGGGAAATCCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp TGGCTCTCCATGGGCAAGCTGCTGGATTCTACAGTTTaGTCTCTCACATGGTCATATGTGCTGTGGGATTTC +
Preference number: 6 (lower is better)
Translates to: WLSMGKLLDSTV*SLTWSYVLWDF
Trigger: GAAATCCCACAGCACATATGACCATGTGAGAGACCAAACTGTAGAATCCAGCAGCTTGCCCATGGAGAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp TTCTGGGACTTAGCTCGGTCTTCCATAACTAAAGTCTaGGTTTTGCCAGCCAGGCCAAGTGTCTTCTCCTTG +
Preference number: 6 (lower is better)
Translates to: FWDLARSSITKV*VLPARPSVFSL
Trigger: CAAGGAGAAGACACTTGGCCTGGCTGGCAAAACCCAGACTTTAGTTATGGAAGACCGAGCTAAGTCCCAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp CTGCTGTTTCATAATCCCAGATTTCTGGGGCTTTCTTaGCTCCTCCATGTGACCGGAGTTTGGGATAGTCTC +
Preference number: 6 (lower is better)
Translates to: LLFHNPRFLGLS*LLHVTGVWDSL
Trigger: GAGACTATCCCAAACTCCGGTCACATGGAGGAGCCAAGAAAGCCCCAGAAATCTGGGATTATGAAACAGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp TGTGGGGCAGTTCTTCATATTGCCCAGCACACATATTaGTTGTGTAGAGCTGGCTTCCATTCTCCTCTCTGG +
Preference number: 6 (lower is better)
Translates to: CGAVLHIAQHTY*LCRAGFHSPLW
Trigger: CCAGAGAGGAGAATGGAAGCCAGCTCTACACAACCAATATGTGTGCTGGGCAATATGAAGAACTGCCCCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 72 bp TTGAGAGAGAAGACCCGATTTTTAAGGGACTCTTCCTaGGGTCTCCCTGTATTCCCTGAGGACTCAGTAGGG +
Preference number: 6 (lower is better)
Translates to: LREKTRFLRDSS*GLPVFPEDSVG
Trigger: CCCTACTGAGTCCTCAGGGAATACAGGGAGACCCAAGGAAGAGTCCCTTAAAAATCGGGTCTTCTCTCTCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 72 bp CTGGCTCTCCATGGGCAAGCTGCTGGATTCTACAGTTaGGTCTCTCACATGGTCATATGTGCTGTGGGATTT +
Preference number: 6 (lower is better)
Translates to: LALHGQAAGFYS*VSHMVICAVGF
Trigger: AAATCCCACAGCACATATGACCATGTGAGAGACCAAACTGTAGAATCCAGCAGCTTGCCCATGGAGAGCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 90 bp CCAGCGGTCAATGAGGCACATATTGAAGGTGAGGTGATCAGATGTTaGCCCTTGGCCAACAAGCAAAATATCCCGCTCCAAATTCTGGCA +
Preference number: 6 (lower is better)
Translates to: PAVNEAHIEGEVIRC*PLANKQNIPLQILA
Trigger: TGCCAGAATTTGGAGCGGGATATTTTGCTTGTTGGCCAAGGGCAAACATCTGATCACCTCACCTTCAATATGTGCCTCATTGACCGCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 72 bp TCTTTGCTTTGCGAAAATGGTAGACCACCAGCATGCTaGCAAAGTCCAGCAGCATACACAGGGCTTGGAAAG +
Preference number: 6 (lower is better)
Translates to: SLLCENGRPPAC*QSPAAYTGLGK
Trigger: CTTTCCAAGCCCTGTGTATGCTGCTGGACTTTGTCAGCATGCTGGTGGTCTACCATTTTCGCAAAGCAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp AAAGAGATAATAGCGAGCCGCAGGTATTTATCCTCCTaGACAAAGCATGGACGATCATCAGCACAGAAGGGG +
Preference number: 6 (lower is better)
Translates to: KEIIASRRYLSS*TKHGRSSAQKG
Trigger: CCCCTTCTGTGCTGATGATCGTCCATGCTTTGTCCAGGAGGATAAATACCTGCGGCTCGCTATTATCTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 72 bp CAGCATGCTGACAAAGTCCAGCAGCATACACAGGGCTaGGAAAGAGATAATAGCGAGCCGCAGGTATTTATC +
Preference number: 6 (lower is better)
Translates to: QHADKVQQHTQG*ERDNSEPQVFI
Trigger: GATAAATACCTGCGGCTCGCTATTATCTCTTTCCAAGCCCTGTGTATGCTGCTGGACTTTGTCAGCATGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 72 bp GCCAACAAGAAACCAAAACACAACCAAGACTATTACTaGCAGCATCCTCATGACCCGACCACCAGTCATGTA +
Preference number: 6 (lower is better)
Translates to: ANKKPKHNQDYY*QHPHDPTTSHV
Trigger: TACATGACTGGTGGTCGGGTCATGAGGATGCTGGCAGTAATAGTCTTGGTTGTGTTTTGGTTTCTTGTTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 72 bp CTGAAGGGACAGTCCGCACTGCATAGCAGAGATAAATaGCCCACAAGAGGAATAAAAATTCAGCAACTGCTG +
Preference number: 6 (lower is better)
Translates to: LKGQSALHSRDK*PTRGIKIQQLL
Trigger: CAGCAGTTGCTGAATTTTTATTCCTCTTGTGGGGCATTTATCTCTGCTATGCAGTGCGGACTGTCCCTTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp GGCAAGCTGCTGGATTCTACAGTTTGGTCTCTCACATaGTCATATGTGCTGTGGGATTTCTTGAGAGAGAAG +
Preference number: 6 (lower is better)
Translates to: GKLLDSTVWSLT*SYVLWDFLREK
Trigger: CTTCTCTCTCAAGAAATCCCACAGCACATATGACCATGTGAGAGACCAAACTGTAGAATCCAGCAGCTTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 72 bp GCACACCTCTGTCTTGTCTATGCTCTTGTGATTGGCTaGGTAGAGACCTTCAGTTGCCTTAGACTTGTGGTA +
Preference number: 6 (lower is better)
Translates to: AHLCLVYALVIG*VETFSCLRLVV
Trigger: TACCACAAGTCTAAGGCAACTGAAGGTCTCTACCAAGCCAATCACAAGAGCATAGACAAGACAGAGGTGTGC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 72 bp TTTTGGTGCTACGACTTTGTGGGGCAGTTCTTCATATaGCCCAGCACACATATTGGTTGTGTAGAGCTGGCT +
Preference number: 6 (lower is better)
Translates to: FWCYDFVGQFFI*PSTHIGCVELA
Trigger: AGCCAGCTCTACACAACCAATATGTGTGCTGGGCAATATGAAGAACTGCCCCACAAAGTCGTAGCACCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 90 bp TCTACAGTTTGGTCTCTCACATGGTCATATGTGCTGTGGGATTTCTaGAGAGAGAAGACCCGATTTTTAAGGGACTCTTCCTTGGGTCTC +
Preference number: 6 (lower is better)
Translates to: STVWSLTWSYVLWDF*REKTRFLRDSSLGL
Trigger: GAGACCCAAGGAAGAGTCCCTTAAAAATCGGGTCTTCTCTCTCAAGAAATCCCACAGCACATATGACCATGTGAGAGACCAAACTGTAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 90 bp ATTCTCTACTTTTGGTGCTACGACTTTGTGGGGCAGTTCTTCATATaGCCCAGCACACATATTGGTTGTGTAGAGCTGGCTTCCATTCTC +
Preference number: 6 (lower is better)
Translates to: ILYFWCYDFVGQFFI*PSTHIGCVELASIL
Trigger: GAGAATGGAAGCCAGCTCTACACAACCAATATGTGTGCTGGGCAATATGAAGAACTGCCCCACAAAGTCGTAGCACCAAAAGTAGAGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 72 bp TTAGAAATCAGACGATTCTCATCTTCTAAAAGGGACTaGCTGTGGATTTCCCAGGGGCACACCTCTGTCTTG +
Preference number: 6 (lower is better)
Translates to: LEIRRFSSSKRD*LWISQGHTSVL
Trigger: CAAGACAGAGGTGTGCCCCTGGGAAATCCACAGTCAGTCCCTTTTAGAAGATGAGAATCGTCTGATTTCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp CCTTGGCCAACAAGCAAAATATCCCGCTCCAAATTCTaGCACATAGAAGAAGTCCAGCCAACAAGAAACCAA +
Preference number: 6 (lower is better)
Translates to: PWPTSKISRSKF*HIEEVQPTRNQ
Trigger: TTGGTTTCTTGTTGGCTGGACTTCTTCTATGTGCCAGAATTTGGAGCGGGATATTTTGCTTGTTGGCCAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 72 bp AATGAGGCACATATTGAAGGTGAGGTGATCAGATGTTaGCCCTTGGCCAACAAGCAAAATATCCCGCTCCAA +
Preference number: 6 (lower is better)
Translates to: NEAHIEGEVIRC*PLANKQNIPLQ
Trigger: TTGGAGCGGGATATTTTGCTTGTTGGCCAAGGGCAAACATCTGATCACCTCACCTTCAATATGTGCCTCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 72 bp TGGTCTCTCACATGGTCATATGTGCTGTGGGATTTCTaGAGAGAGAAGACCCGATTTTTAAGGGACTCTTCC +
Preference number: 6 (lower is better)
Translates to: WSLTWSYVLWDF*REKTRFLRDSS
Trigger: GGAAGAGTCCCTTAAAAATCGGGTCTTCTCTCTCAAGAAATCCCACAGCACATATGACCATGTGAGAGACCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 72 bp GATGGGAGTTATTACTTGAGTTACAGGAGCCAGGAATaGTATCCACAGAGGAAGATGTCTGTTTCTCCTGGT +
Preference number: 6 (lower is better)
Translates to: DGSYYLSYRSQE*YPQRKMSVSPG
Trigger: ACCAGGAGAAACAGACATCTTCCTCTGTGGATATCATTCCTGGCTCCTGTAACTCAAGTAATAACTCCCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 72 bp ACCAAACAATATTGTTTCCAACAGGATGAGCCCAGATaGCCTGATGCTCTTTGCTTTGCGAAAATGGTAGAC +
Preference number: 6 (lower is better)
Translates to: TKQYCFQQDEPR*PDALCFAKMVD
Trigger: GTCTACCATTTTCGCAAAGCAAAGAGCATCAGGGCATCTGGGCTCATCCTGTTGGAAACAATATTGTTTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp GAGTACTTCCTGATGGTCTCTCTATCTTTTGGTTTCTaGGACTTAGCTCGGTCTTCCATAACTAAAGTCTGG +
Preference number: 6 (lower is better)
Translates to: EYFLMVSLSFGF*DLARSSITKVW
Trigger: CCAGACTTTAGTTATGGAAGACCGAGCTAAGTCCCAGAAACCAAAAGATAGAGAGACCATCAGGAAGTACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 72 bp CAGCCATCACTCGAACATTGGTCAATGTCCACTTTCTaGAGGCTTATATCAACTTTCATCACACCCCTGAAT +
Preference number: 6 (lower is better)
Translates to: QPSLEHWSMSTF*RLISTFITPLN
Trigger: ATTCAGGGGTGTGATGAAAGTTGATATAAGCCTTCAGAAAGTGGACATTGACCAATGTTCGAGTGATGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS GCA 72 bp TATGCTCTTGTGATTGGCTTGGTAGAGACCTTCAGTTaGCTTAGACTTGTGGTAGGACTTCTCCTTCAAAAA +
Preference number: 6 (lower is better)
Translates to: YALVIGLVETFS*LRLVVGLLLQK
Trigger: TTTTTGAAGGAGAAGTCCTACCACAAGTCTAAGGCAACTGAAGGTCTCTACCAAGCCAATCACAAGAGCATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 90 bp AGCTCATCTTCATATGCTTCCGTAGCAATGTCATCTCGGGGATTATaGCTTGAATGTGAAAACTTTGGAATTAGAAGCAGCCCAATGGTG +
Preference number: 6 (lower is better)
Translates to: SSSSYASVAMSSRGL*LECENFGIRSSPMV
Trigger: CACCATTGGGCTGCTTCTAATTCCAAAGTTTTCACATTCAAGCAATAATCCCCGAGATGACATTGCTACGGAAGCATATGAAGATGAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS TCA 72 bp AGGAAGATGTCTGTTTCTCCTGGTCTCCCATTTGGTTaGGATTTTCATTCTCTACTTTTGGTGCTACGACTT +
Preference number: 6 (lower is better)
Translates to: RKMSVSPGLPFG*DFHSLLLVLRL
Trigger: AAGTCGTAGCACCAAAAGTAGAGAATGAAAATCTCAACCAAATGGGAGACCAGGAGAAACAGACATCTTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp AGATTTTCATTCTCTACTTTTGGTGCTACGACTTTGTaGGGCAGTTCTTCATATTGCCCAGCACACATATTG +
Preference number: 6 (lower is better)
Translates to: RFSFSTFGATTL*GSSSYCPAHIL
Trigger: CAATATGTGTGCTGGGCAATATGAAGAACTGCCCCACAAAGTCGTAGCACCAAAAGTAGAGAATGAAAATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CCA 72 bp GGAATGATATCCACAGAGGAAGATGTCTGTTTCTCCTaGTCTCCCATTTGGTTGAGATTTTCATTCTCTACT +
Preference number: 6 (lower is better)
Translates to: GMISTEEDVCFS*SPIWLRFSFST
Trigger: AGTAGAGAATGAAAATCTCAACCAAATGGGAGACCAGGAGAAACAGACATCTTCCTCTGTGGATATCATTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8
CDS CAA 90 bp AATGATATCCACAGAGGAAGATGTCTGTTTCTCCTGGTCTCCCATTaGGTTGAGATTTTCATTCTCTACTTTTGGTGCTACGACTTTGTG +
Preference number: 6 (lower is better)
Translates to: NDIHRGRCLFLLVSH*VEIFILYFWCYDFV
Trigger: CACAAAGTCGTAGCACCAAAAGTAGAGAATGAAAATCTCAACCAAATGGGAGACCAGGAGAAACAGACATCTTCCTCTGTGGATATCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055946.8