RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GPR153 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042804

Ensembl transcript IDs: ENSMUST00000055754.8, ENSMUST00000105650.8, ENSMUST00000105651.8

Found 252 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCACTCGCTACACAGGCACAGCCTGCCCCTTCCTGGGAGATGCCTTaGCCAGGAGCAGGTCCATGTCCTGGGCAGCCATCCAAGGTGGCC +
Preference number: 1 (lower is better)
Translates to: PLATQAQPAPSWEMP*PGAGPCPGQPSKVA
Trigger: GGCCACCTTGGATGGCTGCCCAGGACATGGACCTGCTCCTGGGCAAGGCATCTCCCAGGAAGGGGCAGGCTGTGCCTGTGTAGCGAGTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR GCA 90 bp GTCCCAACACAGAGGGTCCGCTGTCTGGTGACAGCTCTCCCCCTCTaGTCCCAGCTCCCAGACTCTCCTGGGAATACCCATGTCCCTGGC +
Preference number: 1 (lower is better)
Translates to: VPTQRVRCLVTALPL*SQLPDSPGNTHVPG
Trigger: GCCAGGGACATGGGTATTCCCAGGAGAGTCTGGGAGCTGGGAGCAGAGGGGGAGAGCTGTCACCAGACAGCGGACCCTCTGTGTTGGGAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CCA 90 bp AAAGTGCAGATGCCACTCGCTACACAGGCACAGCCTGCCCCTTCCTaGGAGATGCCTTGCCCAGGAGCAGGTCCATGTCCTGGGCAGCCA +
Preference number: 1 (lower is better)
Translates to: KVQMPLATQAQPAPS*EMPCPGAGPCPGQP
Trigger: TGGCTGCCCAGGACATGGACCTGCTCCTGGGCAAGGCATCTCCCAGGAAGGGGCAGGCTGTGCCTGTGTAGCGAGTGGCATCTGCACTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR GCA 90 bp CAGGGTTCCCTACGCCCTGGTCTAGCCTCAGAGCTGTACAAAAAGTaGAGATGCCACTCGCTACACAGGCACAGCCTGCCCCTTCCTGGG +
Preference number: 1 (lower is better)
Translates to: QGSLRPGLASELYKK*RCHSLHRHSLPLPG
Trigger: CCCAGGAAGGGGCAGGCTGTGCCTGTGTAGCGAGTGGCATCTGCACTTTTTGTACAGCTCTGAGGCTAGACCAGGGCGTAGGGAACCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR GCA 90 bp GGCCAGCCCTCCTCCCTCATCCCCAGCTGTGGTTGGAAATCTGTCTaGAGAGGGAGAGGAGACAGGCCTGTCCACCACGTCTCAAGAACA +
Preference number: 1 (lower is better)
Translates to: GQPSSLIPSCGWKSV*RGRGDRPVHHVSRT
Trigger: TGTTCTTGAGACGTGGTGGACAGGCCTGTCTCCTCTCCCTCTGCAGACAGATTTCCAACCACAGCTGGGGATGAGGGAGGAGGGCTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CCA 90 bp ACAGCCCAGACCCAGGAGAGAGCAAAGCCCTTCTTGCAGGGGAAGTaGGGTACAGGACACCCTTTCCAAGGACTTTGCCTGTGGGAGGCA +
Preference number: 1 (lower is better)
Translates to: TAQTQERAKPFLQGK*GTGHPFQGLCLWEA
Trigger: TGCCTCCCACAGGCAAAGTCCTTGGAAAGGGTGTCCTGTACCCCACTTCCCCTGCAAGAAGGGCTTTGCTCTCTCCTGGGTCTGGGCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR GCA 90 bp CCTAACAAAGGGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTaGGAGGGCACACAGACCGGGAGAGTTCTTCAAACAGCCCTGAGA +
Preference number: 1 (lower is better)
Translates to: PNKGPSLPLTPGPFK*EGTQTGRVLQTALR
Trigger: TCTCAGGGCTGTTTGAAGAACTCTCCCGGTCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCCCTTTGTTAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR GCA 90 bp TTGGGGTCGTTCTACATGCTACACCTTGAGGTGAGGCAGCGGCAGTaGAGGAAGTTGGATGCAGTCGTGACTTCCGGCTTAAGCTTCTCT +
Preference number: 1 (lower is better)
Translates to: LGSFYMLHLEVRQRQ*RKLDAVVTSGLSFS
Trigger: AGAGAAGCTTAAGCCGGAAGTCACGACTGCATCCAACTTCCTGCACTGCCGCTGCCTCACCTCAAGGTGTAGCATGTAGAACGACCCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CCA 90 bp AACGTACTTTCTCATGGTGGTCGGGTCTCAGGGTTCCCTACGCCCTaGTCTAGCCTCAGAGCTGTACAAAAAGTGCAGATGCCACTCGCT +
Preference number: 1 (lower is better)
Translates to: NVLSHGGRVSGFPTP*SSLRAVQKVQMPLA
Trigger: AGCGAGTGGCATCTGCACTTTTTGTACAGCTCTGAGGCTAGACCAGGGCGTAGGGAACCCTGAGACCCGACCACCATGAGAAAGTACGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CCA 90 bp GACACCCTTTCCAAGGACTTTGCCTGTGGGAGGCAAAACTGGAGATaGGCACTGAGACACGAAAGTCCACTTCCACGAGCTTTGGTTCTC +
Preference number: 1 (lower is better)
Translates to: DTLSKDFACGRQNWR*ALRHESPLPRALVL
Trigger: GAGAACCAAAGCTCGTGGAAGTGGACTTTCGTGTCTCAGTGCCCATCTCCAGTTTTGCCTCCCACAGGCAAAGTCCTTGGAAAGGGTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CCA 90 bp GCACAGCAGCAAATGGCCAGAGGCAGCTTCTCCCAAATCCAATCATaGACCACAGTCCCCTGCTCTACTCTTCTGTGGTGGCTGATCTTT +
Preference number: 1 (lower is better)
Translates to: AQQQMARGSFSQIQS*TTVPCSTLLWWLIF
Trigger: AAAGATCAGCCACCACAGAAGAGTAGAGCAGGGGACTGTGGTCCATGATTGGATTTGGGAGAAGCTGCCTCTGGCCATTTGCTGCTGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR TCA 90 bp TTTCCAAGGACTTTGCCTGTGGGAGGCAAAACTGGAGATGGGCACTaGGACACGAAAGTCCACTTCCACGAGCTTTGGTTCTCTGCGATA +
Preference number: 1 (lower is better)
Translates to: FPRTLPVGGKTGDGH*DTKVHFHELWFSAI
Trigger: TATCGCAGAGAACCAAAGCTCGTGGAAGTGGACTTTCGTGTCTCAGTGCCCATCTCCAGTTTTGCCTCCCACAGGCAAAGTCCTTGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CAA 90 bp GCCACTCGCTACACAGGCACAGCCTGCCCCTTCCTGGGAGATGCCTaGCCCAGGAGCAGGTCCATGTCCTGGGCAGCCATCCAAGGTGGC +
Preference number: 2 (lower is better)
Translates to: ATRYTGTACPFLGDA*PRSRSMSWAAIQGG
Trigger: GCCACCTTGGATGGCTGCCCAGGACATGGACCTGCTCCTGGGCAAGGCATCTCCCAGGAAGGGGCAGGCTGTGCCTGTGTAGCGAGTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp CATGGTGGTCGGGTCTCAGGGTTCCCTACGCCCTGGTCTAGCCTCAGAGCTGTACAGCCTGCCCCTTCCTaGGAGATGCCTTGCCCAGGA +
Preference number: 2 (lower is better)
Translates to: HGGRVSGFPTPWSSLRAVQPAPS*EMPCPG
Trigger: TCCTGGGCAAGGCATCTCCCAGGAAGGGGCAGGCTG...TACAGCTCTGAGGCTAGACCAGGGCGTAGGGAACCCTGAGACCCGACCACCATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR TCA 90 bp CTGCAGAGGGAGAGGAGACAGGCCTGTCCACCACGTCTCAAGAACAAGGAGACAGGGTCCGCTGTCTGGTaGCAGCTCTCCCCCTCTGCT +
Preference number: 2 (lower is better)
Translates to: LQRERRQACPPRLKNKETGSAVW*QLSPSA
Trigger: AGCAGAGGGGGAGAGCTGTCACCAGACAGCGGACCC...TGTCTCCTTGTTCTTGAGACGTGGTGGACAGGCCTGTCTCCTCTCCCTCTGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp AGGGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGACCGCTGTGCCTCTTCATaGCGCCACGCTCTGCATGGC +
Preference number: 2 (lower is better)
Translates to: RALTTSHTWSIQVRGHTDRCASS*RHALHG
Trigger: GCCATGCAGAGCGTGGCGCCATGAAGAGGCACAGCG...GTCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp CCACGAGCTTTGGTTCTCTGCGATAGGCACCAGCAGCCTTCACAGCAGGACCACCTGAGGGGCCTCAATTaGGGCCCACGTGCTGAAGGC +
Preference number: 2 (lower is better)
Translates to: PRALVLCDRHQQPSQQDHLRGLN*GPRAEG
Trigger: GCCTTCAGCACGTGGGCCCCAATTGAGGCCCCTCAG...GTGGTCCTGCTGTGAAGGCTGCTGGTGCCTATCGCAGAGAACCAAAGCTCGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR GCA 90 bp GGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGACCGTCCTGGGAGATGCCTTaGCCAGGAGCAGGTCCATGT +
Preference number: 2 (lower is better)
Translates to: GPHYLSHLVHSSARAHRPSWEMP*PGAGPC
Trigger: ACATGGACCTGCTCCTGGGCAAGGCATCTCCCAGGA...CGGTCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp AAGGGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGACGCTGTGCCTCTTCATaGCGCCACGCTCTGCATGGC +
Preference number: 2 (lower is better)
Translates to: KGPHYLSHLVHSSARAHRRCASS*RHALHG
Trigger: GCCATGCAGAGCGTGGCGCCATGAAGAGGCACAGCG...TCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp CTGCAGAGGGAGAGGAGACAGGCCTGTCCACCACGTCTCAAGAACAAGGAGACACAGCCTGCCCCTTCCTaGGAGATGCCTTGCCCAGGA +
Preference number: 2 (lower is better)
Translates to: LQRERRQACPPRLKNKETQPAPS*EMPCPG
Trigger: TCCTGGGCAAGGCATCTCCCAGGAAGGGGCAGGCTG...TGTCTCCTTGTTCTTGAGACGTGGTGGACAGGCCTGTCTCCTCTCCCTCTGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp GGGCTGGGTGGTGGTATAGAGATAGCTAGAGCTGTCAGCAAACAGGGAGGCTGGCTGAGGGGCCTCAATTaGGGCCCACGTGCTGAAGGC +
Preference number: 2 (lower is better)
Translates to: GLGGGIEIARAVSKQGGWLRGLN*GPRAEG
Trigger: GCCTTCAGCACGTGGGCCCCAATTGAGGCCCCTCAG...CCAGCCTCCCTGTTTGCTGACAGCTCTAGCTATCTCTATACCACCACCCAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp CATGGTGGTCGGGTCTCAGGGTTCCCTACGCCCTGGTCTAGCCTCAGAGCTGTACTGTGGGAGCATCTTTaGCGCTGTGCCTCTTCATGG +
Preference number: 2 (lower is better)
Translates to: HGGRVSGFPTPWSSLRAVLWEHL*RCASSW
Trigger: CCATGAAGAGGCACAGCGCCAAAGATGCTCCCACAG...TACAGCTCTGAGGCTAGACCAGGGCGTAGGGAACCCTGAGACCCGACCACCATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp CCCTCATCCCCAGCTGTGGTTGGAAATCTGTCTGCAGAGGGAGAGGAGACAGGCGCTCCCAGACTCTCCTaGGAATACCCATGTCCCTGG +
Preference number: 2 (lower is better)
Translates to: PSSPAVVGNLSAEGEETGAPRLS*EYPCPW
Trigger: CCAGGGACATGGGTATTCCCAGGAGAGTCTGGGAGC...GCCTGTCTCCTCTCCCTCTGCAGACAGATTTCCAACCACAGCTGGGGATGAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR GCA 90 bp GGGCTGGGTGGTGGTATAGAGATAGCTAGAGCTGTCAGCAAACAGGGAGGCTGGTCCTGGGAGATGCCTTaGCCAGGAGCAGGTCCATGT +
Preference number: 2 (lower is better)
Translates to: GLGGGIEIARAVSKQGGWSWEMP*PGAGPC
Trigger: ACATGGACCTGCTCCTGGGCAAGGCATCTCCCAGGA...CCAGCCTCCCTGTTTGCTGACAGCTCTAGCTATCTCTATACCACCACCCAGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp GGGCAAGTCTCCAAGAGGGCAAAGGTCATTAAGACTGAGGGGCCTCAATTGGGGAGCAGGTCCATGTCCTaGGCAGCCATCCAAGGTGGC +
Preference number: 2 (lower is better)
Translates to: GQVSKRAKVIKTEGPQLGSRSMS*AAIQGG
Trigger: GCCACCTTGGATGGCTGCCCAGGACATGGACCTGCT...CCCCAATTGAGGCCCCTCAGTCTTAATGACCTTTGCCCTCTTGGAGACTTGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp CCTACGCCCTGGTCTAGCCTCAGAGCTGTACAAAAAGTGCAGATGCCACTCGCTAGCAGGTCCATGTCCTaGGCAGCCATCCAAGGTGGC +
Preference number: 2 (lower is better)
Translates to: PTPWSSLRAVQKVQMPLASRSMS*AAIQGG
Trigger: GCCACCTTGGATGGCTGCCCAGGACATGGACCTGCT...AGCGAGTGGCATCTGCACTTTTTGTACAGCTCTGAGGCTAGACCAGGGCGTAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR TCA 90 bp CCCTCATCCCCAGCTGTGGTTGGAAATCTGTCTGCAGAGGGAGAGGAGACAGGCAACTTGTTTGGGCTCTaGAGACCCTTGTGCTTGGGG +
Preference number: 2 (lower is better)
Translates to: PSSPAVVGNLSAEGEETGNLFGL*RPLCLG
Trigger: CCCCAAGCACAAGGGTCTTCAGAGCCCAAACAAGTT...GCCTGTCTCCTCTCCCTCTGCAGACAGATTTCCAACCACAGCTGGGGATGAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR GCA 90 bp TGTCTGCAGAGGGAGAGGAGACAGGCCTGTCCACCACGTCTCAAGAACAAGGAGGAGCAAAGCCCTTCTTaGAGGGGAAGTGGGGTACAG +
Preference number: 2 (lower is better)
Translates to: CLQRERRQACPPRLKNKEEQSPS*RGSGVQ
Trigger: CTGTACCCCACTTCCCCTGCAAGAAGGGCTTTGCTC...CTCCTTGTTCTTGAGACGTGGTGGACAGGCCTGTCTCCTCTCCCTCTGCAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp GGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGACCGGAACGTACTTTCTCATaGTGGTCGGGTCTCAGGGTT +
Preference number: 2 (lower is better)
Translates to: GPHYLSHLVHSSARAHRPERTFS*WSGLRV
Trigger: AACCCTGAGACCCGACCACCATGAGAAAGTACGTTC...CGGTCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR TCA 90 bp AGGCCTGTCCACCACGTCTCAAGAACAAGGAGACACAGGCTGGTTCTGTGCTGGAACTTGTTTGGGCTCTaGAGACCCTTGTGCTTGGGG +
Preference number: 2 (lower is better)
Translates to: RPVHHVSRTRRHRLVLCWNLFGL*RPLCLG
Trigger: CCCCAAGCACAAGGGTCTTCAGAGCCCAAACAAGTT...CCAGCACAGAACCAGCCTGTGTCTCCTTGTTCTTGAGACGTGGTGGACAGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR GCA 90 bp CACAGCAGCAAATGGCCAGAGGCAGCTTCTCCCAAATCCAATCATGGACCACAGTCCTGGGAGATGCCTTaGCCAGGAGCAGGTCCATGT +
Preference number: 2 (lower is better)
Translates to: HSSKWPEAASPKSNHGPQSWEMP*PGAGPC
Trigger: ACATGGACCTGCTCCTGGGCAAGGCATCTCCCAGGA...CTGTGGTCCATGATTGGATTTGGGAGAAGCTGCCTCTGGCCATTTGCTGCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR GCA 90 bp GGGCTGGGTGGTGGTATAGAGATAGCTAGAGCTGTCAGCAAACAGGGAGGCTGGGTGCAGGAAGTTGGATaGAGTCGTGACTTCCGGCTT +
Preference number: 2 (lower is better)
Translates to: GLGGGIEIARAVSKQGGWVQEVG*SRDFRL
Trigger: AAGCCGGAAGTCACGACTGCATCCAACTTCCTGCAC...CCAGCCTCCCTGTTTGCTGACAGCTCTAGCTATCTCTATACCACCACCCAGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp ATCCAAGGTGGCCAGTCGTCCCTCCAGGCGACACCAGAAGGAAAGAACTGTAAGCTGTGGGAGCATCTTTaGCGCTGTGCCTCTTCATGG +
Preference number: 2 (lower is better)
Translates to: IQGGQSSLQATPEGKNCKLWEHL*RCASSW
Trigger: CCATGAAGAGGCACAGCGCCAAAGATGCTCCCACAG...CTTACAGTTCTTTCCTTCTGGTGTCGCCTGGAGGGACGACTGGCCACCTTGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp TGTCTGCAGAGGGAGAGGAGACAGGCCTGTCCACCACGTCTCAAGAACAAGGAGACTACCTCTCACACCTaGTCCATTCAAGTGCGAGGG +
Preference number: 2 (lower is better)
Translates to: CLQRERRQACPPRLKNKETTSHT*SIQVRG
Trigger: CCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGT...CTCCTTGTTCTTGAGACGTGGTGGACAGGCCTGTCTCCTCTCCCTCTGCAGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp AGGCCTGTCCACCACGTCTCAAGAACAAGGAGACACAGGCTGGTTCTGTGCTGGCACTTCCACGAGCTTTaGTTCTCTGCGATAGGCACC +
Preference number: 2 (lower is better)
Translates to: RPVHHVSRTRRHRLVLCWHFHEL*FSAIGT
Trigger: GGTGCCTATCGCAGAGAACCAAAGCTCGTGGAAGTG...CCAGCACAGAACCAGCCTGTGTCTCCTTGTTCTTGAGACGTGGTGGACAGGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp CTGCAGAGGGAGAGGAGACAGGCCTGTCCACCACGTCTCAAGAACAAGGAGACATGTGGGAGGCAAAACTaGAGATGGGCACTGAGACAC +
Preference number: 2 (lower is better)
Translates to: LQRERRQACPPRLKNKETCGRQN*RWALRH
Trigger: GTGTCTCAGTGCCCATCTCCAGTTTTGCCTCCCACA...TGTCTCCTTGTTCTTGAGACGTGGTGGACAGGCCTGTCTCCTCTCCCTCTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp CACAGCAGCAAATGGCCAGAGGCAGCTTCTCCCAAATCCAATCATGGACCACAGGAATACCCATGTCCCTaGCACAGCCCAGACCCAGGA +
Preference number: 2 (lower is better)
Translates to: HSSKWPEAASPKSNHGPQEYPCP*HSPDPG
Trigger: TCCTGGGTCTGGGCTGTGCCAGGGACATGGGTATTC...CTGTGGTCCATGATTGGATTTGGGAGAAGCTGCCTCTGGCCATTTGCTGCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR GCA 90 bp GGGCAAGTCTCCAAGAGGGCAAAGGTCATTAAGACTGAGGGGCCTCAATTGGGGGTGCAGGAAGTTGGATaGAGTCGTGACTTCCGGCTT +
Preference number: 2 (lower is better)
Translates to: GQVSKRAKVIKTEGPQLGVQEVG*SRDFRL
Trigger: AAGCCGGAAGTCACGACTGCATCCAACTTCCTGCAC...CCCCAATTGAGGCCCCTCAGTCTTAATGACCTTTGCCCTCTTGGAGACTTGCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp TCAGGAGTGACTGAGGGGGACTATGTCCCCACTACAAGTATTGCCATTGAATACCGCTGTGCCTCTTCATaGCGCCACGCTCTGCATGGC +
Preference number: 2 (lower is better)
Translates to: SGVTEGDYVPTTSIAIEYRCASS*RHALHG
Trigger: GCCATGCAGAGCGTGGCGCCATGAAGAGGCACAGCG...GTATTCAATGGCAATACTTGTAGTGGGGACATAGTCCCCCTCAGTCACTCCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp GGGCAAGTCTCCAAGAGGGCAAAGGTCATTAAGACTGAGGGGCCTCAATTGGGGACTACCTCTCACACCTaGTCCATTCAAGTGCGAGGG +
Preference number: 2 (lower is better)
Translates to: GQVSKRAKVIKTEGPQLGTTSHT*SIQVRG
Trigger: CCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGT...CCCCAATTGAGGCCCCTCAGTCTTAATGACCTTTGCCCTCTTGGAGACTTGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp CCCTCATCCCCAGCTGTGGTTGGAAATCTGTCTGCAGAGGGAGAGGAGACAGGCGGGAGACAGGCAATATaGTGGAATTTTGAGCATGGG +
Preference number: 2 (lower is better)
Translates to: PSSPAVVGNLSAEGEETGGRQAI*WNFEHG
Trigger: CCCATGCTCAAAATTCCACCATATTGCCTGTCTCCC...GCCTGTCTCCTCTCCCTCTGCAGACAGATTTCCAACCACAGCTGGGGATGAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR TCA 90 bp CACAGCAGCAAATGGCCAGAGGCAGCTTCTCCCAAATCCAATCATGGACCACAGAACTTGTTTGGGCTCTaGAGACCCTTGTGCTTGGGG +
Preference number: 2 (lower is better)
Translates to: HSSKWPEAASPKSNHGPQNLFGL*RPLCLG
Trigger: CCCCAAGCACAAGGGTCTTCAGAGCCCAAACAAGTT...CTGTGGTCCATGATTGGATTTGGGAGAAGCTGCCTCTGGCCATTTGCTGCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp CTGCAGAGGGAGAGGAGACAGGCCTGTCCACCACGTCTCAAGAACAAGGAGACAGGGAGACAGGCAATATaGTGGAATTTTGAGCATGGG +
Preference number: 2 (lower is better)
Translates to: LQRERRQACPPRLKNKETGRQAI*WNFEHG
Trigger: CCCATGCTCAAAATTCCACCATATTGCCTGTCTCCC...TGTCTCCTTGTTCTTGAGACGTGGTGGACAGGCCTGTCTCCTCTCCCTCTGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CAA 90 bp TTCTACATGCTACACCTTGAGGTGAGGCAGCGGCAGTGCAGGAAGTaGGATGCAGTCGTGACTTCCGGCTTAAGCTTCTCTAGGAACGTA +
Preference number: 2 (lower is better)
Translates to: FYMLHLEVRQRQCRK*DAVVTSGLSFSRNV
Trigger: TACGTTCCTAGAGAAGCTTAAGCCGGAAGTCACGACTGCATCCAACTTCCTGCACTGCCGCTGCCTCACCTCAAGGTGTAGCATGTAGAA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR GCA 90 bp CACAGCAGCAAATGGCCAGAGGCAGCTTCTCCCAAATCCAATCATGGACCACAGCCTTTCCAAGGACTTTaGCTGTGGGAGGCAAAACTG +
Preference number: 2 (lower is better)
Translates to: HSSKWPEAASPKSNHGPQPFQGL*LWEAKL
Trigger: CAGTTTTGCCTCCCACAGGCAAAGTCCTTGGAAAGG...CTGTGGTCCATGATTGGATTTGGGAGAAGCTGCCTCTGGCCATTTGCTGCTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR GCA 90 bp GAACAAGGAGACACAGGCTGGTTCTGTGCTGGCCTTAAGACTATCTCCAGGTCCCCTTTCCAAGGACTTTaGCTGTGGGAGGCAAAACTG +
Preference number: 2 (lower is better)
Translates to: EQGDTGWFCAGLKTISRSPFQGL*LWEAKL
Trigger: CAGTTTTGCCTCCCACAGGCAAAGTCCTTGGAAAGG...GGACCTGGAGATAGTCTTAAGGCCAGCACAGAACCAGCCTGTGTCTCCTTGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp GAACAAGGAGACACAGGCTGGTTCTGTGCTGGCCTTAAGACTATCTCCAGGTCCGAACGTACTTTCTCATaGTGGTCGGGTCTCAGGGTT +
Preference number: 2 (lower is better)
Translates to: EQGDTGWFCAGLKTISRSERTFS*WSGLRV
Trigger: AACCCTGAGACCCGACCACCATGAGAAAGTACGTTC...GGACCTGGAGATAGTCTTAAGGCCAGCACAGAACCAGCCTGTGTCTCCTTGTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp CCCTCATCCCCAGCTGTGGTTGGAAATCTGTCTGCAGAGGGAGAGGAGACAGGCTCAATAGAACTTGTTTaGGCTCTGAAGACCCTTGTG +
Preference number: 2 (lower is better)
Translates to: PSSPAVVGNLSAEGEETGSIELV*ALKTLV
Trigger: CACAAGGGTCTTCAGAGCCCAAACAAGTTCTATTGA...GCCTGTCTCCTCTCCCTCTGCAGACAGATTTCCAACCACAGCTGGGGATGAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp TGTCTGCAGAGGGAGAGGAGACAGGCCTGTCCACCACGTCTCAAGAACAAGGAGTCAATAGAACTTGTTTaGGCTCTGAAGACCCTTGTG +
Preference number: 2 (lower is better)
Translates to: CLQRERRQACPPRLKNKESIELV*ALKTLV
Trigger: CACAAGGGTCTTCAGAGCCCAAACAAGTTCTATTGA...CTCCTTGTTCTTGAGACGTGGTGGACAGGCCTGTCTCCTCTCCCTCTGCAGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp AGTGAAACCCAAGTGGTAAATTGGTCATTTGAGACCTGTGAGAGAGACAGTGGCGCTCCCAGACTCTCCTaGGAATACCCATGTCCCTGG +
Preference number: 2 (lower is better)
Translates to: SETQVVNWSFETCERDSGAPRLS*EYPCPW
Trigger: CCAGGGACATGGGTATTCCCAGGAGAGTCTGGGAGC...GCCACTGTCTCTCTCACAGGTCTCAAATGACCAATTTACCACTTGGGTTTCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR GCA 90 bp AGTGAAACCCAAGTGGTAAATTGGTCATTTGAGACCTGTGAGAGAGACAGTGGCGAGCAAAGCCCTTCTTaGAGGGGAAGTGGGGTACAG +
Preference number: 2 (lower is better)
Translates to: SETQVVNWSFETCERDSGEQSPS*RGSGVQ
Trigger: CTGTACCCCACTTCCCCTGCAAGAAGGGCTTTGCTC...GCCACTGTCTCTCTCACAGGTCTCAAATGACCAATTTACCACTTGGGTTTCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR GCA 90 bp AGTGAAACCCAAGTGGTAAATTGGTCATTTGAGACCTGTGAGAGAGACAGTGGCTGGACCACAGTCCCCTaGTCTACTCTTCTGTGGTGG +
Preference number: 2 (lower is better)
Translates to: SETQVVNWSFETCERDSGWTTVP*STLLWW
Trigger: CCACCACAGAAGAGTAGAGCAGGGGACTGTGGTCCA...GCCACTGTCTCTCTCACAGGTCTCAAATGACCAATTTACCACTTGGGTTTCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp TCAGGAGTGACTGAGGGGGACTATGTCCCCACTACAAGTATTGCCATTGAATACCCTCATCCCCAGCTGTaGTTGGAAATCTGTCTGCAG +
Preference number: 2 (lower is better)
Translates to: SGVTEGDYVPTTSIAIEYPHPQL*LEICLQ
Trigger: CTGCAGACAGATTTCCAACCACAGCTGGGGATGAGG...GTATTCAATGGCAATACTTGTAGTGGGGACATAGTCCCCCTCAGTCACTCCTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp GGGCTGGGTGGTGGTATAGAGATAGCTAGAGCTGTCAGCAAACAGGGAGGCTGGTCTACTCTTCTGTGGTaGCTGATCTTTTACTTAACC +
Preference number: 2 (lower is better)
Translates to: GLGGGIEIARAVSKQGGWSTLLW*LIFYLT
Trigger: GGTTAAGTAAAAGATCAGCCACCACAGAAGAGTAGA...CCAGCCTCCCTGTTTGCTGACAGCTCTAGCTATCTCTATACCACCACCCAGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp AGTGAAACCCAAGTGGTAAATTGGTCATTTGAGACCTGTGAGAGAGACAGTGGCCAAGGACTTTGCCTGTaGGAGGCAAAACTGGAGATG +
Preference number: 2 (lower is better)
Translates to: SETQVVNWSFETCERDSGQGLCL*EAKLEM
Trigger: CATCTCCAGTTTTGCCTCCCACAGGCAAAGTCCTTG...GCCACTGTCTCTCTCACAGGTCTCAAATGACCAATTTACCACTTGGGTTTCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp ATGTCCCCACTACAAGTATTGCCATTGAATACAAAATACAGAGTGAAACCCAAGGAATACCCATGTCCCTaGCACAGCCCAGACCCAGGA +
Preference number: 2 (lower is better)
Translates to: MSPLQVLPLNTKYRVKPKEYPCP*HSPDPG
Trigger: TCCTGGGTCTGGGCTGTGCCAGGGACATGGGTATTC...CTTGGGTTTCACTCTGTATTTTGTATTCAATGGCAATACTTGTAGTGGGGACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp ATGTCCCCACTACAAGTATTGCCATTGAATACAAAATACAGAGTGAAACCCAAGACAGTGGCTAGCTGGTaGCCTCTGCCCCTGTATGAC +
Preference number: 2 (lower is better)
Translates to: MSPLQVLPLNTKYRVKPKTVASW*PLPLYD
Trigger: GTCATACAGGGGCAGAGGCCACCAGCTAGCCACTGT...CTTGGGTTTCACTCTGTATTTTGTATTCAATGGCAATACTTGTAGTGGGGACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp TCAGGAGTGACTGAGGGGGACTATGTCCCCACTACAAGTATTGCCATTGAATACTCAATAGAACTTGTTTaGGCTCTGAAGACCCTTGTG +
Preference number: 2 (lower is better)
Translates to: SGVTEGDYVPTTSIAIEYSIELV*ALKTLV
Trigger: CACAAGGGTCTTCAGAGCCCAAACAAGTTCTATTGA...GTATTCAATGGCAATACTTGTAGTGGGGACATAGTCCCCCTCAGTCACTCCTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp ATGTCCCCACTACAAGTATTGCCATTGAATACAAAATACAGAGTGAAACCCAAGCACTTCCACGAGCTTTaGTTCTCTGCGATAGGCACC +
Preference number: 2 (lower is better)
Translates to: MSPLQVLPLNTKYRVKPKHFHEL*FSAIGT
Trigger: GGTGCCTATCGCAGAGAACCAAAGCTCGTGGAAGTG...CTTGGGTTTCACTCTGTATTTTGTATTCAATGGCAATACTTGTAGTGGGGACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp ATGTCCCCACTACAAGTATTGCCATTGAATACAAAATACAGAGTGAAACCCAAGCCTCATCCCCAGCTGTaGTTGGAAATCTGTCTGCAG +
Preference number: 2 (lower is better)
Translates to: MSPLQVLPLNTKYRVKPKPHPQL*LEICLQ
Trigger: CTGCAGACAGATTTCCAACCACAGCTGGGGATGAGG...CTTGGGTTTCACTCTGTATTTTGTATTCAATGGCAATACTTGTAGTGGGGACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CCA 90 bp ATGTCCCCACTACAAGTATTGCCATTGAATACAAAATACAGAGTGAAACCCAAGCAAGGACTTTGCCTGTaGGAGGCAAAACTGGAGATG +
Preference number: 2 (lower is better)
Translates to: MSPLQVLPLNTKYRVKPKQGLCL*EAKLEM
Trigger: CATCTCCAGTTTTGCCTCCCACAGGCAAAGTCCTTG...CTTGGGTTTCACTCTGTATTTTGTATTCAATGGCAATACTTGTAGTGGGGACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CCA 72 bp CTGGGAGATGCCTTGCCCAGGAGCAGGTCCATGTCCTaGGCAGCCATCCAAGGTGGCCAGTCGTCCCTCCAG +
Preference number: 3 (lower is better)
Translates to: LGDALPRSRSMS*AAIQGGQSSLQ
Trigger: CTGGAGGGACGACTGGCCACCTTGGATGGCTGCCCAGGACATGGACCTGCTCCTGGGCAAGGCATCTCCCAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CCA 72 bp CAGGAGCAGGTCCATGTCCTGGGCAGCCATCCAAGGTaGCCAGTCGTCCCTCCAGGCGACACCAGAAGGAAA +
Preference number: 3 (lower is better)
Translates to: QEQVHVLGSHPR*PVVPPGDTRRK
Trigger: TTTCCTTCTGGTGTCGCCTGGAGGGACGACTGGCCACCTTGGATGGCTGCCCAGGACATGGACCTGCTCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR GCA 72 bp AAAAGTGCAGATGCCACTCGCTACACAGGCACAGCCTaGCCCTTCCTGGGAGATGCCTTGCCCAGGAGCAGG +
Preference number: 3 (lower is better)
Translates to: KSADATRYTGTA*PFLGDALPRSR
Trigger: CCTGCTCCTGGGCAAGGCATCTCCCAGGAAGGGGCAGGCTGTGCCTGTGTAGCGAGTGGCATCTGCACTTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CAA 90 bp CCCTCATCCCCAGCTGTGGTTGGAAATCTGTCTGCAGAGGGAGAGGAGACAGGCTTCCTGGGAGATGCCTaGCCCAGGAGCAGGTCCATG +
Preference number: 3 (lower is better)
Translates to: PSSPAVVGNLSAEGEETGFLGDA*PRSRSM
Trigger: CATGGACCTGCTCCTGGGCAAGGCATCTCCCAGGAA...GCCTGTCTCCTCTCCCTCTGCAGACAGATTTCCAACCACAGCTGGGGATGAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR GCA 72 bp TCCTCCCTCATCCCCAGCTGTGGTTGGAAATCTGTCTaGAGAGGGAGAGGAGACAGGCCTGTCCACCACGTC +
Preference number: 3 (lower is better)
Translates to: SSLIPSCGWKSV*RGRGDRPVHHV
Trigger: GACGTGGTGGACAGGCCTGTCTCCTCTCCCTCTGCAGACAGATTTCCAACCACAGCTGGGGATGAGGGAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CAA 90 bp AGGGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGACCCTGTGGGAGCATCTTaGGCGCTGTGCCTCTTCATG +
Preference number: 3 (lower is better)
Translates to: RALTTSHTWSIQVRGHTDPVGAS*ALCLFM
Trigger: CATGAAGAGGCACAGCGCCAAAGATGCTCCCACAGG...GTCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CAA 90 bp CTGCAGAGGGAGAGGAGACAGGCCTGTCCACCACGTCTCAAGAACAAGGAGACATTCCTGGGAGATGCCTaGCCCAGGAGCAGGTCCATG +
Preference number: 3 (lower is better)
Translates to: LQRERRQACPPRLKNKETFLGDA*PRSRSM
Trigger: CATGGACCTGCTCCTGGGCAAGGCATCTCCCAGGAA...TGTCTCCTTGTTCTTGAGACGTGGTGGACAGGCCTGTCTCCTCTCCCTCTGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CAA 90 bp AAGGGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGACCTGTGGGAGCATCTTaGGCGCTGTGCCTCTTCATG +
Preference number: 3 (lower is better)
Translates to: KGPHYLSHLVHSSARAHRPVGAS*ALCLFM
Trigger: CATGAAGAGGCACAGCGCCAAAGATGCTCCCACAGG...TCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CAA 90 bp CCCTCATCCCCAGCTGTGGTTGGAAATCTGTCTGCAGAGGGAGAGGAGACAGGCAGAGCAAAGCCCTTCTaGCAGGGGAAGTGGGGTACA +
Preference number: 3 (lower is better)
Translates to: PSSPAVVGNLSAEGEETGRAKPF*QGKWGT
Trigger: TGTACCCCACTTCCCCTGCAAGAAGGGCTTTGCTCT...GCCTGTCTCCTCTCCCTCTGCAGACAGATTTCCAACCACAGCTGGGGATGAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR GCA 72 bp CTACGCCCTGGTCTAGCCTCAGAGCTGTACAAAAAGTaGAGATGCCACTCGCTACACAGGCACAGCCTGCCC +
Preference number: 3 (lower is better)
Translates to: LRPGLASELYKK*RCHSLHRHSLP
Trigger: GGGCAGGCTGTGCCTGTGTAGCGAGTGGCATCTGCACTTTTTGTACAGCTCTGAGGCTAGACCAGGGCGTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CAA 90 bp ATCCAAGGTGGCCAGTCGTCCCTCCAGGCGACACCAGAAGGAAAGAACTGTAAGCCTGTGGGAGCATCTTaGGCGCTGTGCCTCTTCATG +
Preference number: 3 (lower is better)
Translates to: IQGGQSSLQATPEGKNCKPVGAS*ALCLFM
Trigger: CATGAAGAGGCACAGCGCCAAAGATGCTCCCACAGG...CTTACAGTTCTTTCCTTCTGGTGTCGCCTGGAGGGACGACTGGCCACCTTGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CAA 90 bp TGTCTGCAGAGGGAGAGGAGACAGGCCTGTCCACCACGTCTCAAGAACAAGGAGCCACTTCCACGAGCTTaGGTTCTCTGCGATAGGCAC +
Preference number: 3 (lower is better)
Translates to: CLQRERRQACPPRLKNKEPLPRA*VLCDRH
Trigger: GTGCCTATCGCAGAGAACCAAAGCTCGTGGAAGTGG...CTCCTTGTTCTTGAGACGTGGTGGACAGGCCTGTCTCCTCTCCCTCTGCAGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CAA 90 bp CCCTCATCCCCAGCTGTGGTTGGAAATCTGTCTGCAGAGGGAGAGGAGACAGGCCCCTTTCCAAGGACTTaGCCTGTGGGAGGCAAAACT +
Preference number: 3 (lower is better)
Translates to: PSSPAVVGNLSAEGEETGPFPRT*PVGGKT
Trigger: AGTTTTGCCTCCCACAGGCAAAGTCCTTGGAAAGGG...GCCTGTCTCCTCTCCCTCTGCAGACAGATTTCCAACCACAGCTGGGGATGAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR GCA 72 bp CCTGGTCTAGCCTCAGAGCTGTACAAAAAGTGCAGATaGCACTCGCTACACAGGCACAGCCTGCCCCTTCCT +
Preference number: 3 (lower is better)
Translates to: PGLASELYKKCR*HSLHRHSLPLP
Trigger: AGGAAGGGGCAGGCTGTGCCTGTGTAGCGAGTGGCATCTGCACTTTTTGTACAGCTCTGAGGCTAGACCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR GCA 72 bp GGGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTaGGAGGGCACACAGACCGGGAGAGTTCTTCAAACA +
Preference number: 3 (lower is better)
Translates to: GPSLPLTPGPFK*EGTQTGRVLQT
Trigger: TGTTTGAAGAACTCTCCCGGTCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR GCA 72 bp GGGAAGTGGGGTACAGGACACCCTTTCCAAGGACTTTaGCTGTGGGAGGCAAAACTGGAGATGGGCACTGAG +
Preference number: 3 (lower is better)
Translates to: GKWGTGHPFQGL*LWEAKLEMGTE
Trigger: CTCAGTGCCCATCTCCAGTTTTGCCTCCCACAGGCAAAGTCCTTGGAAAGGGTGTCCTGTACCCCACTTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CCA 72 bp ACCCAGGAGAGAGCAAAGCCCTTCTTGCAGGGGAAGTaGGGTACAGGACACCCTTTCCAAGGACTTTGCCTG +
Preference number: 3 (lower is better)
Translates to: TQERAKPFLQGK*GTGHPFQGLCL
Trigger: CAGGCAAAGTCCTTGGAAAGGGTGTCCTGTACCCCACTTCCCCTGCAAGAAGGGCTTTGCTCTCTCCTGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CCA 72 bp TCTCATGGTGGTCGGGTCTCAGGGTTCCCTACGCCCTaGTCTAGCCTCAGAGCTGTACAAAAAGTGCAGATG +
Preference number: 3 (lower is better)
Translates to: SHGGRVSGFPTP*SSLRAVQKVQM
Trigger: CATCTGCACTTTTTGTACAGCTCTGAGGCTAGACCAGGGCGTAGGGAACCCTGAGACCCGACCACCATGAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CCA 72 bp TGGGGTACAGGACACCCTTTCCAAGGACTTTGCCTGTaGGAGGCAAAACTGGAGATGGGCACTGAGACACGA +
Preference number: 3 (lower is better)
Translates to: WGTGHPFQGLCL*EAKLEMGTETR
Trigger: TCGTGTCTCAGTGCCCATCTCCAGTTTTGCCTCCCACAGGCAAAGTCCTTGGAAAGGGTGTCCTGTACCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CCA 72 bp GGTCATTTGAGACCTGTGAGAGAGACAGTGGCTAGCTaGTGGCCTCTGCCCCTGTATGACATGTCAGTCCCT +
Preference number: 3 (lower is better)
Translates to: GHLRPVRETVAS*WPLPLYDMSVP
Trigger: AGGGACTGACATGTCATACAGGGGCAGAGGCCACCAGCTAGCCACTGTCTCTCTCACAGGTCTCAAATGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CAA 90 bp CACAGCAGCAAATGGCCAGAGGCAGCTTCTCCCAAATCCAATCATGGACCACAGAGAGCAAAGCCCTTCTaGCAGGGGAAGTGGGGTACA +
Preference number: 3 (lower is better)
Translates to: HSSKWPEAASPKSNHGPQRAKPF*QGKWGT
Trigger: TGTACCCCACTTCCCCTGCAAGAAGGGCTTTGCTCT...CTGTGGTCCATGATTGGATTTGGGAGAAGCTGCCTCTGGCCATTTGCTGCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR GCA 72 bp TTCTACATGCTACACCTTGAGGTGAGGCAGCGGCAGTaGAGGAAGTTGGATGCAGTCGTGACTTCCGGCTTA +
Preference number: 3 (lower is better)
Translates to: FYMLHLEVRQRQ*RKLDAVVTSGL
Trigger: TAAGCCGGAAGTCACGACTGCATCCAACTTCCTGCACTGCCGCTGCCTCACCTCAAGGTGTAGCATGTAGAA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CCA 72 bp TCCAAGGACTTTGCCTGTGGGAGGCAAAACTGGAGATaGGCACTGAGACACGAAAGTCCACTTCCACGAGCT +
Preference number: 3 (lower is better)
Translates to: SKDFACGRQNWR*ALRHESPLPRA
Trigger: AGCTCGTGGAAGTGGACTTTCGTGTCTCAGTGCCCATCTCCAGTTTTGCCTCCCACAGGCAAAGTCCTTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CCA 72 bp CTGTCCACCACGTCTCAAGAACAAGGAGACACAGGCTaGTTCTGTGCTGGCCTTAAGACTATCTCCAGGTCC +
Preference number: 3 (lower is better)
Translates to: LSTTSQEQGDTG*FCAGLKTISRS
Trigger: GGACCTGGAGATAGTCTTAAGGCCAGCACAGAACCAGCCTGTGTCTCCTTGTTCTTGAGACGTGGTGGACAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CCA 72 bp CAAATGGCCAGAGGCAGCTTCTCCCAAATCCAATCATaGACCACAGTCCCCTGCTCTACTCTTCTGTGGTGG +
Preference number: 3 (lower is better)
Translates to: QMARGSFSQIQS*TTVPCSTLLWW
Trigger: CCACCACAGAAGAGTAGAGCAGGGGACTGTGGTCCATGATTGGATTTGGGAGAAGCTGCCTCTGGCCATTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CCA 72 bp CATTTGAGACCTGTGAGAGAGACAGTGGCTAGCTGGTaGCCTCTGCCCCTGTATGACATGTCAGTCCCTGAA +
Preference number: 3 (lower is better)
Translates to: HLRPVRETVASW*PLPLYDMSVPE
Trigger: TTCAGGGACTGACATGTCATACAGGGGCAGAGGCCACCAGCTAGCCACTGTCTCTCTCACAGGTCTCAAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR TCA 72 bp ACTTTGCCTGTGGGAGGCAAAACTGGAGATGGGCACTaGGACACGAAAGTCCACTTCCACGAGCTTTGGTTC +
Preference number: 3 (lower is better)
Translates to: TLPVGGKTGDGH*DTKVHFHELWF
Trigger: GAACCAAAGCTCGTGGAAGTGGACTTTCGTGTCTCAGTGCCCATCTCCAGTTTTGCCTCCCACAGGCAAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR GCA 72 bp GAGATAGGGAAACTGAGGCAGGCCACATGGGACGCCTaGTCAATAGAACTTGTTTGGGCTCTGAAGACCCTT +
Preference number: 3 (lower is better)
Translates to: EIGKLRQATWDA*SIELVWALKTL
Trigger: AAGGGTCTTCAGAGCCCAAACAAGTTCTATTGAGCAGGCGTCCCATGTGGCCTGCCTCAGTTTCCCTATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CCA 72 bp ACCCTTTCCAAGGACTTTGCCTGTGGGAGGCAAAACTaGAGATGGGCACTGAGACACGAAAGTCCACTTCCA +
Preference number: 3 (lower is better)
Translates to: TLSKDFACGRQN*RWALRHESPLP
Trigger: TGGAAGTGGACTTTCGTGTCTCAGTGCCCATCTCCAGTTTTGCCTCCCACAGGCAAAGTCCTTGGAAAGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CAA 90 bp GGGCTGGGTGGTGGTATAGAGATAGCTAGAGCTGTCAGCAAACAGGGAGGCTGGCTCAATAGAACTTGTTaGGGCTCTGAAGACCCTTGT +
Preference number: 3 (lower is better)
Translates to: GLGGGIEIARAVSKQGGWLNRTC*GSEDPC
Trigger: ACAAGGGTCTTCAGAGCCCAAACAAGTTCTATTGAG...CCAGCCTCCCTGTTTGCTGACAGCTCTAGCTATCTCTATACCACCACCCAGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CAA 90 bp AGGCCTGTCCACCACGTCTCAAGAACAAGGAGACACAGGCTGGTTCTGTGCTGGCAATATGGTGGAATTTaGAGCATGGGGACACTAACA +
Preference number: 3 (lower is better)
Translates to: RPVHHVSRTRRHRLVLCWQYGGI*SMGTLT
Trigger: TGTTAGTGTCCCCATGCTCAAAATTCCACCATATTG...CCAGCACAGAACCAGCCTGTGTCTCCTTGTTCTTGAGACGTGGTGGACAGGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CAA 90 bp AGTGAAACCCAAGTGGTAAATTGGTCATTTGAGACCTGTGAGAGAGACAGTGGCCATCCCCAGCTGTGGTaGGAAATCTGTCTGCAGAGG +
Preference number: 3 (lower is better)
Translates to: SETQVVNWSFETCERDSGHPQLW*EICLQR
Trigger: CCTCTGCAGACAGATTTCCAACCACAGCTGGGGATG...GCCACTGTCTCTCTCACAGGTCTCAAATGACCAATTTACCACTTGGGTTTCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR-3UTR CAA 90 bp GAACAAGGAGACACAGGCTGGTTCTGTGCTGGCCTTAAGACTATCTCCAGGTCCCAATATGGTGGAATTTaGAGCATGGGGACACTAACA +
Preference number: 3 (lower is better)
Translates to: EQGDTGWFCAGLKTISRSQYGGI*SMGTLT
Trigger: TGTTAGTGTCCCCATGCTCAAAATTCCACCATATTG...GGACCTGGAGATAGTCTTAAGGCCAGCACAGAACCAGCCTGTGTCTCCTTGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR GCA 72 bp AGCTTCTCCCAAATCCAATCATGGACCACAGTCCCCTaGTCTACTCTTCTGTGGTGGCTGATCTTTTACTTA +
Preference number: 3 (lower is better)
Translates to: SFSQIQSWTTVP*STLLWWLIFYL
Trigger: TAAGTAAAAGATCAGCCACCACAGAAGAGTAGAGCAGGGGACTGTGGTCCATGATTGGATTTGGGAGAAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CCA 72 bp CAATCATGGACCACAGTCCCCTGCTCTACTCTTCTGTaGTGGCTGATCTTTTACTTAACCAGGGATAACAGA +
Preference number: 3 (lower is better)
Translates to: QSWTTVPCSTLL*WLIFYLTRDNR
Trigger: TCTGTTATCCCTGGTTAAGTAAAAGATCAGCCACCACAGAAGAGTAGAGCAGGGGACTGTGGTCCATGATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CCA 72 bp GGGAGAGTTCTTCAAACAGCCCTGAGAGATGTATCATaGTCATTCACTCTTAGAGATAGGGAAACTGAGGCA +
Preference number: 3 (lower is better)
Translates to: GRVLQTALRDVS*SFTLRDRETEA
Trigger: TGCCTCAGTTTCCCTATCTCTAAGAGTGAATGACCATGATACATCTCTCAGGGCTGTTTGAAGAACTCTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR TCA 90 bp ACTCGCTACACAGGCACAGCCTGCCCCTTCCTGGGAGATGCCTTGCCCAGGAGCCGATGGTGGGCACGGTaGAGGTGCGGCGGTCAGCCC +
Preference number: 4 (lower is better)
Translates to: TRYTGTACPFLGDALPRSRWWAR*RCGGQP
Trigger: GGGCTGACCGCCGCACCTTCACCGTGCCCACCATCG...GCTCCTGGGCAAGGCATCTCCCAGGAAGGGGCAGGCTGTGCCTGTGTAGCGAGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp ACTCGCTACACAGGCACAGCCTGCCCCTTCCTGGGAGATGCCTTGCCCAGGAGCCGCTCGCTCGTGTCGTaGCAGCCAACGGCAGGAAGG +
Preference number: 4 (lower is better)
Translates to: TRYTGTACPFLGDALPRSRSLVS*QPTAGR
Trigger: CCTTCCTGCCGTTGGCTGGCACGACACGAGCGAGCG...GCTCCTGGGCAAGGCATCTCCCAGGAAGGGGCAGGCTGTGCCTGTGTAGCGAGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp CCACGAGCTTTGGTTCTCTGCGATAGGCACCAGCAGCCTTCACAGCAGGACCACGGGAGAACCGCCGGGTaGGCGGGACCTGCGAGCACC +
Preference number: 4 (lower is better)
Translates to: PRALVLCDRHQQPSQQDHGRTAG*AGPAST
Trigger: GGTGCTCGCAGGTCCCGCCCACCCGGCGGTTCTCCC...GTGGTCCTGCTGTGAAGGCTGCTGGTGCCTATCGCAGAGAACCAAAGCTCGTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055754.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp AGGGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGACGGGAGAACCGCCGGGTaGGCGGGACCTGCGAGCACC +
Preference number: 4 (lower is better)
Translates to: RALTTSHTWSIQVRGHTDGRTAG*AGPAST
Trigger: GGTGCTCGCAGGTCCCGCCCACCCGGCGGTTCTCCC...GTCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055754.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp GGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGACCGAGCGTGGCAGGAAGGTaGGCAGCGGGACGGCTGCCC +
Preference number: 4 (lower is better)
Translates to: GPHYLSHLVHSSARAHRPSVAGR*AAGRLP
Trigger: GGGCAGCCGTCCCGCTGCCCACCTTCCTGCCACGCT...CGGTCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp AGGGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGACAGCGGGGAAGGGTTGTaGTGGGGCGGGCACGCGACG +
Preference number: 4 (lower is better)
Translates to: RALTTSHTWSIQVRGHTDSGEGL*WGGHAT
Trigger: CGTCGCGTGCCCGCCCCAGCACAACCCTTCCCCGCT...GTCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp ACTCGCTACACAGGCACAGCCTGCCCCTTCCTGGGAGATGCCTTGCCCAGGAGCTGCAGACCATGCCCATaGCCACGCTGCCTCCCACCA +
Preference number: 4 (lower is better)
Translates to: TRYTGTACPFLGDALPRSCRPCP*PRCLPP
Trigger: TGGTGGGAGGCAGCGTGGCCATGGGCATGGTCTGCA...GCTCCTGGGCAAGGCATCTCCCAGGAAGGGGCAGGCTGTGCCTGTGTAGCGAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR TCA 90 bp GGCCAGTCGTCCCTCCAGGCGACACCAGAAGGAAAGAACTGTAAGAGAAGCGCACGATGGTGGGCACGGTaGAGGTGCGGCGGTCAGCCC +
Preference number: 4 (lower is better)
Translates to: GQSSLQATPEGKNCKRSARWWAR*RCGGQP
Trigger: GGGCTGACCGCCGCACCTTCACCGTGCCCACCATCG...TGCGCTTCTCTTACAGTTCTTTCCTTCTGGTGTCGCCTGGAGGGACGACTGGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp TTGTGCTTGGGGTCGTTCTACATGCTACACCTTGAGGTGAGGCAGCGGCAGTGCAGCGGGGAAGGGTTGTaGTGGGGCGGGCACGCGACG +
Preference number: 4 (lower is better)
Translates to: LCLGSFYMLHLEVRQRQCSGEGL*WGGHAT
Trigger: CGTCGCGTGCCCGCCCCAGCACAACCCTTCCCCGCT...GCACTGCCGCTGCCTCACCTCAAGGTGTAGCATGTAGAACGACCCCAAGCACAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp GGCCAGTCGTCCCTCCAGGCGACACCAGAAGGAAAGAACTGTAAGAGAAGCGCAAGCGTGGCAGGAAGGTaGGCAGCGGGACGGCTGCCC +
Preference number: 4 (lower is better)
Translates to: GQSSLQATPEGKNCKRSASVAGR*AAGRLP
Trigger: GGGCAGCCGTCCCGCTGCCCACCTTCCTGCCACGCT...TGCGCTTCTCTTACAGTTCTTTCCTTCTGGTGTCGCCTGGAGGGACGACTGGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp TTGTGCTTGGGGTCGTTCTACATGCTACACCTTGAGGTGAGGCAGCGGCAGTGCGCCCGAGCTCCAGCGTaGCAGGAAGGTGGGCAGCGG +
Preference number: 4 (lower is better)
Translates to: LCLGSFYMLHLEVRQRQCARAPA*QEGGQR
Trigger: CCGCTGCCCACCTTCCTGCCACGCTGGAGCTCGGGC...GCACTGCCGCTGCCTCACCTCAAGGTGTAGCATGTAGAACGACCCCAAGCACAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp AGGCCTGTCCACCACGTCTCAAGAACAAGGAGACACAGGCTGGTTCTGTGCTGGGCCACCAGGGGGCGTTaGGACCTCAGCAGGCTCCGC +
Preference number: 4 (lower is better)
Translates to: RPVHHVSRTRRHRLVLCWATRGR*DLSRLR
Trigger: GCGGAGCCTGCTGAGGTCCCAACGCCCCCTGGTGGC...CCAGCACAGAACCAGCCTGTGTCTCCTTGTTCTTGAGACGTGGTGGACAGGCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp GGGCTGGGTGGTGGTATAGAGATAGCTAGAGCTGTCAGCAAACAGGGAGGCTGGGCCACCAGGGGGCGTTaGGACCTCAGCAGGCTCCGC +
Preference number: 4 (lower is better)
Translates to: GLGGGIEIARAVSKQGGWATRGR*DLSRLR
Trigger: GCGGAGCCTGCTGAGGTCCCAACGCCCCCTGGTGGC...CCAGCCTCCCTGTTTGCTGACAGCTCTAGCTATCTCTATACCACCACCCAGCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp GCTACACAGGCACAGCCTGCCCCTTCCTGGGAGATGCCTTGCCCAGGAGCAGGTACTGTGTGCACCGCCTaGTTCTTGGCGTTGCTCAGC +
Preference number: 4 (lower is better)
Translates to: ATQAQPAPSWEMPCPGAGTVCTA*FLALLS
Trigger: GCTGAGCAACGCCAAGAAGCAGGCGGTGCACACAGT...ACCTGCTCCTGGGCAAGGCATCTCCCAGGAAGGGGCAGGCTGTGCCTGTGTAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp CTGCAGAGGGAGAGGAGACAGGCCTGTCCACCACGTCTCAAGAACAAGGAGACAGGGCAGCGGGACGGCTaGCCACACGTCGGCATCATC +
Preference number: 4 (lower is better)
Translates to: LQRERRQACPPRLKNKETGQRDG*PHVGII
Trigger: GATGATGCCGACGTGTGGGCAGCCGTCCCGCTGCCC...TGTCTCCTTGTTCTTGAGACGTGGTGGACAGGCCTGTCTCCTCTCCCTCTGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp TGTCTGCAGAGGGAGAGGAGACAGGCCTGTCCACCACGTCTCAAGAACAAGGAGGGGCAGCGGGACGGCTaGCCACACGTCGGCATCATC +
Preference number: 4 (lower is better)
Translates to: CLQRERRQACPPRLKNKEGQRDG*PHVGII
Trigger: GATGATGCCGACGTGTGGGCAGCCGTCCCGCTGCCC...CTCCTTGTTCTTGAGACGTGGTGGACAGGCCTGTCTCCTCTCCCTCTGCAGACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp ATCCAAGGTGGCCAGTCGTCCCTCCAGGCGACACCAGAAGGAAAGAACTGTAAGAGCGGGGAAGGGTTGTaGTGGGGCGGGCACGCGACG +
Preference number: 4 (lower is better)
Translates to: IQGGQSSLQATPEGKNCKSGEGL*WGGHAT
Trigger: CGTCGCGTGCCCGCCCCAGCACAACCCTTCCCCGCT...CTTACAGTTCTTTCCTTCTGGTGTCGCCTGGAGGGACGACTGGCCACCTTGGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp GGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGACCGGGATGCCCCAGGCGTTaGCTAGCAGCGACAGACCTC +
Preference number: 4 (lower is better)
Translates to: GPHYLSHLVHSSARAHRPGCPRR*LAATDL
Trigger: GAGGTCTGTCGCTGCTAGCCAACGCCTGGGGCATCC...CGGTCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp GCTACACAGGCACAGCCTGCCCCTTCCTGGGAGATGCCTTGCCCAGGAGCAGGTTGCGTGGCCAGTGTCTaGAAGAGGGCAATGGCTGTG +
Preference number: 4 (lower is better)
Translates to: ATQAQPAPSWEMPCPGAGCVASV*KRAMAV
Trigger: CACAGCCATTGCCCTCTTCCAGACACTGGCCACGCA...ACCTGCTCCTGGGCAAGGCATCTCCCAGGAAGGGGCAGGCTGTGCCTGTGTAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp ACTCGCTACACAGGCACAGCCTGCCCCTTCCTGGGAGATGCCTTGCCCAGGAGCTGCGTGGCCAGTGTCTaGAAGAGGGCAATGGCTGTG +
Preference number: 4 (lower is better)
Translates to: TRYTGTACPFLGDALPRSCVASV*KRAMAV
Trigger: CACAGCCATTGCCCTCTTCCAGACACTGGCCACGCA...GCTCCTGGGCAAGGCATCTCCCAGGAAGGGGCAGGCTGTGCCTGTGTAGCGAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp AGGGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGACGGTGCCCCACCTGCGTaGCCAGTGTCTGGAAGAGGG +
Preference number: 4 (lower is better)
Translates to: RALTTSHTWSIQVRGHTDGAPPA*PVSGRG
Trigger: CCCTCTTCCAGACACTGGCCACGCAGGTGGGGCACC...GTCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp CCTACGCCCTGGTCTAGCCTCAGAGCTGTACAAAAAGTGCAGATGCCACTCGCTGCCCGAGCTCCAGCGTaGCAGGAAGGTGGGCAGCGG +
Preference number: 4 (lower is better)
Translates to: PTPWSSLRAVQKVQMPLAARAPA*QEGGQR
Trigger: CCGCTGCCCACCTTCCTGCCACGCTGGAGCTCGGGC...AGCGAGTGGCATCTGCACTTTTTGTACAGCTCTGAGGCTAGACCAGGGCGTAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp GGGCAAGTCTCCAAGAGGGCAAAGGTCATTAAGACTGAGGGGCCTCAATTGGGGGCCACCAGGGGGCGTTaGGACCTCAGCAGGCTCCGC +
Preference number: 4 (lower is better)
Translates to: GQVSKRAKVIKTEGPQLGATRGR*DLSRLR
Trigger: GCGGAGCCTGCTGAGGTCCCAACGCCCCCTGGTGGC...CCCCAATTGAGGCCCCTCAGTCTTAATGACCTTTGCCCTCTTGGAGACTTGCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR TCA 90 bp TTGTGCTTGGGGTCGTTCTACATGCTACACCTTGAGGTGAGGCAGCGGCAGTGCGCTTGGCACCCACACTaGGGATGCCCCAGGCGTTGG +
Preference number: 4 (lower is better)
Translates to: LCLGSFYMLHLEVRQRQCAWHPH*GCPRRW
Trigger: CCAACGCCTGGGGCATCCTCAGTGTGGGTGCCAAGC...GCACTGCCGCTGCCTCACCTCAAGGTGTAGCATGTAGAACGACCCCAAGCACAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR TCA 90 bp CACAGCAGCAAATGGCCAGAGGCAGCTTCTCCCAAATCCAATCATGGACCACAGCGATGGTGGGCACGGTaGAGGTGCGGCGGTCAGCCC +
Preference number: 4 (lower is better)
Translates to: HSSKWPEAASPKSNHGPQRWWAR*RCGGQP
Trigger: GGGCTGACCGCCGCACCTTCACCGTGCCCACCATCG...CTGTGGTCCATGATTGGATTTGGGAGAAGCTGCCTCTGGCCATTTGCTGCTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR TCA 90 bp TTGTGCTTGGGGTCGTTCTACATGCTACACCTTGAGGTGAGGCAGCGGCAGTGCAGTCCGAGTGCAGCGTaGCGTAGCCCGAGGACTCGG +
Preference number: 4 (lower is better)
Translates to: LCLGSFYMLHLEVRQRQCSPSAA*RSPRTR
Trigger: CCGAGTCCTCGGGCTACGTCACGCTGCACTCGGACT...GCACTGCCGCTGCCTCACCTCAAGGTGTAGCATGTAGAACGACCCCAAGCACAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp AAGGGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGACGCTCGCTCGTGTCGTaGCAGCCAACGGCAGGAAGG +
Preference number: 4 (lower is better)
Translates to: KGPHYLSHLVHSSARAHRRSLVS*QPTAGR
Trigger: CCTTCCTGCCGTTGGCTGGCACGACACGAGCGAGCG...TCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp GGGCAAGTCTCCAAGAGGGCAAAGGTCATTAAGACTGAGGGGCCTCAATTGGGGGGGCAGCGGGACGGCTaGCCACACGTCGGCATCATC +
Preference number: 4 (lower is better)
Translates to: GQVSKRAKVIKTEGPQLGGQRDG*PHVGII
Trigger: GATGATGCCGACGTGTGGGCAGCCGTCCCGCTGCCC...CCCCAATTGAGGCCCCTCAGTCTTAATGACCTTTGCCCTCTTGGAGACTTGCCC
61% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp AGGGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGACGGATGCCCCAGGCGTTaGCTAGCAGCGACAGACCTC +
Preference number: 4 (lower is better)
Translates to: RALTTSHTWSIQVRGHTDGCPRR*LAATDL
Trigger: GAGGTCTGTCGCTGCTAGCCAACGCCTGGGGCATCC...GTCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp ACTCGCTACACAGGCACAGCCTGCCCCTTCCTGGGAGATGCCTTGCCCAGGAGCTCTGGAAGAGGGCAATaGCTGTGCAGACCATGCCCA +
Preference number: 4 (lower is better)
Translates to: TRYTGTACPFLGDALPRSSGRGQ*LCRPCP
Trigger: TGGGCATGGTCTGCACAGCCATTGCCCTCTTCCAGA...GCTCCTGGGCAAGGCATCTCCCAGGAAGGGGCAGGCTGTGCCTGTGTAGCGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp CTGCAGAGGGAGAGGAGACAGGCCTGTCCACCACGTCTCAAGAACAAGGAGACAGGTGCCCCACCTGCGTaGCCAGTGTCTGGAAGAGGG +
Preference number: 4 (lower is better)
Translates to: LQRERRQACPPRLKNKETGAPPA*PVSGRG
Trigger: CCCTCTTCCAGACACTGGCCACGCAGGTGGGGCACC...TGTCTCCTTGTTCTTGAGACGTGGTGGACAGGCCTGTCTCCTCTCCCTCTGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp AAGGGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGAGGTGCCCCACCTGCGTaGCCAGTGTCTGGAAGAGGG +
Preference number: 4 (lower is better)
Translates to: KGPHYLSHLVHSSARAHRGAPPA*PVSGRG
Trigger: CCCTCTTCCAGACACTGGCCACGCAGGTGGGGCACC...TCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp CCCTCATCCCCAGCTGTGGTTGGAAATCTGTCTGCAGAGGGAGAGGAGACAGGCCCGATCCTCCTGCAGTaGCCGCAGAGGGTAGAGCTG +
Preference number: 4 (lower is better)
Translates to: PSSPAVVGNLSAEGEETGPILLQ*PQRVEL
Trigger: CAGCTCTACCCTCTGCGGCCACTGCAGGAGGATCGG...GCCTGTCTCCTCTCCCTCTGCAGACAGATTTCCAACCACAGCTGGGGATGAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp GAACAAGGAGACACAGGCTGGTTCTGTGCTGGCCTTAAGACTATCTCCAGGTCCGCCCGAGCTCCAGCGTaGCAGGAAGGTGGGCAGCGG +
Preference number: 4 (lower is better)
Translates to: EQGDTGWFCAGLKTISRSARAPA*QEGGQR
Trigger: CCGCTGCCCACCTTCCTGCCACGCTGGAGCTCGGGC...GGACCTGGAGATAGTCTTAAGGCCAGCACAGAACCAGCCTGTGTCTCCTTGTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR TCA 90 bp ATCCAAGGTGGCCAGTCGTCCCTCCAGGCGACACCAGAAGGAAAGAACTGTAAGGCTTGGCACCCACACTaGGGATGCCCCAGGCGTTGG +
Preference number: 4 (lower is better)
Translates to: IQGGQSSLQATPEGKNCKAWHPH*GCPRRW
Trigger: CCAACGCCTGGGGCATCCTCAGTGTGGGTGCCAAGC...CTTACAGTTCTTTCCTTCTGGTGTCGCCTGGAGGGACGACTGGCCACCTTGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR TCA 90 bp AGGGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGACTGGGTACCGCCACATTaGGCATGTGGGTGGCTGCCA +
Preference number: 4 (lower is better)
Translates to: RALTTSHTWSIQVRGHTDWVPPH*ACGWLP
Trigger: TGGCAGCCACCCACATGCTCAATGTGGCGGTACCCA...GTCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR TCA 90 bp CATGGTGGTCGGGTCTCAGGGTTCCCTACGCCCTGGTCTAGCCTCAGAGCTGTAGAAGGGCCGACAGGATaGAGGACACCATCCAGATGC +
Preference number: 4 (lower is better)
Translates to: HGGRVSGFPTPWSSLRAVEGPTG*RTPSRC
Trigger: GCATCTGGATGGTGTCCTTCATCCTGTCGGCCCTTC...TACAGCTCTGAGGCTAGACCAGGGCGTAGGGAACCCTGAGACCCGACCACCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR TCA 90 bp CCTACGCCCTGGTCTAGCCTCAGAGCTGTACAAAAAGTGCAGATGCCACTCGCTAGTCCGAGTGCAGCGTaGCGTAGCCCGAGGACTCGG +
Preference number: 4 (lower is better)
Translates to: PTPWSSLRAVQKVQMPLASPSAA*RSPRTR
Trigger: CCGAGTCCTCGGGCTACGTCACGCTGCACTCGGACT...AGCGAGTGGCATCTGCACTTTTTGTACAGCTCTGAGGCTAGACCAGGGCGTAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp CCCTCATCCCCAGCTGTGGTTGGAAATCTGTCTGCAGAGGGAGAGGAGACAGGCGCGACGCTTGCCCTGTaGGTCTTCCACCACGATGGT +
Preference number: 4 (lower is better)
Translates to: PSSPAVVGNLSAEGEETGATLAL*VFHHDG
Trigger: ACCATCGTGGTGGAAGACGCACAGGGCAAGCGTCGC...GCCTGTCTCCTCTCCCTCTGCAGACAGATTTCCAACCACAGCTGGGGATGAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp TGTCTGCAGAGGGAGAGGAGACAGGCCTGTCCACCACGTCTCAAGAACAAGGAGGGGCTGAAACAGGGCTaGCCTCCTGGAAACCCGCAC +
Preference number: 4 (lower is better)
Translates to: CLQRERRQACPPRLKNKEGLKQG*PPGNPH
Trigger: GTGCGGGTTTCCAGGAGGGCAGCCCTGTTTCAGCCC...CTCCTTGTTCTTGAGACGTGGTGGACAGGCCTGTCTCCTCTCCCTCTGCAGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055754.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp GGCCAGTCGTCCCTCCAGGCGACACCAGAAGGAAAGAACTGTAAGAGAAGCGCAAAGATGCGCTCAGGCTaGTCTGCAGGGGCCCCACGT +
Preference number: 4 (lower is better)
Translates to: GQSSLQATPEGKNCKRSAKMRSG*SAGAPR
Trigger: ACGTGGGGCCCCTGCAGAGCAGCCTGAGCGCATCTT...TGCGCTTCTCTTACAGTTCTTTCCTTCTGGTGTCGCCTGGAGGGACGACTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp TGTCTGCAGAGGGAGAGGAGACAGGCCTGTCCACCACGTCTCAAGAACAAGGAGCCGATCCTCCTGCAGTaGCCGCAGAGGGTAGAGCTG +
Preference number: 4 (lower is better)
Translates to: CLQRERRQACPPRLKNKEPILLQ*PQRVEL
Trigger: CAGCTCTACCCTCTGCGGCCACTGCAGGAGGATCGG...CTCCTTGTTCTTGAGACGTGGTGGACAGGCCTGTCTCCTCTCCCTCTGCAGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp GGGCAAGTCTCCAAGAGGGCAAAGGTCATTAAGACTGAGGGGCCTCAATTGGGGGGGAGAACCGCCGGGTaGGCGGGACCTGCAGATACT +
Preference number: 4 (lower is better)
Translates to: GQVSKRAKVIKTEGPQLGGRTAG*AGPADT
Trigger: AGTATCTGCAGGTCCCGCCCACCCGGCGGTTCTCCC...CCCCAATTGAGGCCCCTCAGTCTTAATGACCTTTGCCCTCTTGGAGACTTGCCC
60% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000105650.8
3UTR CAA 72 bp GGCACAGCCCAGACCCAGGAGAGAGCAAAGCCCTTCTaGCAGGGGAAGTGGGGTACAGGACACCCTTTCCAA +
Preference number: 4 (lower is better)
Translates to: GTAQTQERAKPF*QGKWGTGHPFQ
Trigger: TTGGAAAGGGTGTCCTGTACCCCACTTCCCCTGCAAGAAGGGCTTTGCTCTCTCCTGGGTCTGGGCTGTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR TCA 90 bp AGGGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGACAGTTCTGGCAGGCTCTaGGCCATCAATGGAGGAGCG +
Preference number: 4 (lower is better)
Translates to: RALTTSHTWSIQVRGHTDSSGRL*AINGGA
Trigger: CGCTCCTCCATTGATGGCTCAGAGCCTGCCAGAACT...GTCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR TCA 90 bp CACAGCAGCAAATGGCCAGAGGCAGCTTCTCCCAAATCCAATCATGGACCACAGAGTCCGAGTGCAGCGTaGCGTAGCCCGAGGACTCGG +
Preference number: 4 (lower is better)
Translates to: HSSKWPEAASPKSNHGPQSPSAA*RSPRTR
Trigger: CCGAGTCCTCGGGCTACGTCACGCTGCACTCGGACT...CTGTGGTCCATGATTGGATTTGGGAGAAGCTGCCTCTGGCCATTTGCTGCTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp CATGGTGGTCGGGTCTCAGGGTTCCCTACGCCCTGGTCTAGCCTCAGAGCTGTAGGCTTCCACTTCTTCTaGTTGGCACCCACACTGAGG +
Preference number: 4 (lower is better)
Translates to: HGGRVSGFPTPWSSLRAVGFHFF*LAPTLR
Trigger: CCTCAGTGTGGGTGCCAAGCAGAAGAAGTGGAAGCC...TACAGCTCTGAGGCTAGACCAGGGCGTAGGGAACCCTGAGACCCGACCACCATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp GGCCAGTCGTCCCTCCAGGCGACACCAGAAGGAAAGAACTGTAAGAGAAGCGCAGCGACGCTTGCCCTGTaGGTCTTCCACCACGATGGT +
Preference number: 4 (lower is better)
Translates to: GQSSLQATPEGKNCKRSAATLAL*VFHHDG
Trigger: ACCATCGTGGTGGAAGACGCACAGGGCAAGCGTCGC...TGCGCTTCTCTTACAGTTCTTTCCTTCTGGTGTCGCCTGGAGGGACGACTGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp CCTACGCCCTGGTCTAGCCTCAGAGCTGTACAAAAAGTGCAGATGCCACTCGCTAAGATGCGCTCAGGCTaGTCTGCAGGGGCCCCACGT +
Preference number: 4 (lower is better)
Translates to: PTPWSSLRAVQKVQMPLAKMRSG*SAGAPR
Trigger: ACGTGGGGCCCCTGCAGAGCAGCCTGAGCGCATCTT...AGCGAGTGGCATCTGCACTTTTTGTACAGCTCTGAGGCTAGACCAGGGCGTAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp GGCCAGTCGTCCCTCCAGGCGACACCAGAAGGAAAGAACTGTAAGAGAAGCGCAAACCTACCGCACTGCTaGGCAGCCTCCGCTCATCAC +
Preference number: 4 (lower is better)
Translates to: GQSSLQATPEGKNCKRSANLPHC*AASAHH
Trigger: GTGATGAGCGGAGGCTGCCCAGCAGTGCGGTAGGTT...TGCGCTTCTCTTACAGTTCTTTCCTTCTGGTGTCGCCTGGAGGGACGACTGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp GGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGACCGTCTGGAAGAGGGCAATaGCTGTGCAGACCATGCCCA +
Preference number: 4 (lower is better)
Translates to: GPHYLSHLVHSSARAHRPSGRGQ*LCRPCP
Trigger: TGGGCATGGTCTGCACAGCCATTGCCCTCTTCCAGA...CGGTCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR TCA 90 bp AAGGGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGAGAAGGGCCGACAGGATaGAGGACACCATCCAGATGC +
Preference number: 4 (lower is better)
Translates to: KGPHYLSHLVHSSARAHREGPTG*RTPSRC
Trigger: GCATCTGGATGGTGTCCTTCATCCTGTCGGCCCTTC...TCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR TCA 90 bp GGCCAGTCGTCCCTCCAGGCGACACCAGAAGGAAAGAACTGTAAGAGAAGCGCAAGTTCTGGCAGGCTCTaGGCCATCAATGGAGGAGCG +
Preference number: 4 (lower is better)
Translates to: GQSSLQATPEGKNCKRSASSGRL*AINGGA
Trigger: CGCTCCTCCATTGATGGCTCAGAGCCTGCCAGAACT...TGCGCTTCTCTTACAGTTCTTTCCTTCTGGTGTCGCCTGGAGGGACGACTGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp TTGTGCTTGGGGTCGTTCTACATGCTACACCTTGAGGTGAGGCAGCGGCAGTGCACTGTGTGCACCGCCTaGTTCTTGGCGTTGCTCAGC +
Preference number: 4 (lower is better)
Translates to: LCLGSFYMLHLEVRQRQCTVCTA*FLALLS
Trigger: GCTGAGCAACGCCAAGAAGCAGGCGGTGCACACAGT...GCACTGCCGCTGCCTCACCTCAAGGTGTAGCATGTAGAACGACCCCAAGCACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp GGGCTGGGTGGTGGTATAGAGATAGCTAGAGCTGTCAGCAAACAGGGAGGCTGGAGAGGGCAATGGCTGTaGAGACCATGCCCATGGCCA +
Preference number: 4 (lower is better)
Translates to: GLGGGIEIARAVSKQGGWRGQWL*RPCPWP
Trigger: TGGCCATGGGCATGGTCTGCACAGCCATTGCCCTCT...CCAGCCTCCCTGTTTGCTGACAGCTCTAGCTATCTCTATACCACCACCCAGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp ATCCAAGGTGGCCAGTCGTCCCTCCAGGCGACACCAGAAGGAAAGAACTGTAAGAACCTACCGCACTGCTaGGCAGCCTCCGCTCATCAC +
Preference number: 4 (lower is better)
Translates to: IQGGQSSLQATPEGKNCKNLPHC*AASAHH
Trigger: GTGATGAGCGGAGGCTGCCCAGCAGTGCGGTAGGTT...CTTACAGTTCTTTCCTTCTGGTGTCGCCTGGAGGGACGACTGGCCACCTTGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp CCTACGCCCTGGTCTAGCCTCAGAGCTGTACAAAAAGTGCAGATGCCACTCGCTAACCTACCGCACTGCTaGGCAGCCTCCGCTCATCAC +
Preference number: 4 (lower is better)
Translates to: PTPWSSLRAVQKVQMPLANLPHC*AASAHH
Trigger: GTGATGAGCGGAGGCTGCCCAGCAGTGCGGTAGGTT...AGCGAGTGGCATCTGCACTTTTTGTACAGCTCTGAGGCTAGACCAGGGCGTAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp AAGGGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGATGCGTGGCCAGTGTCTaGAAGAGGGCAATGGCTGTG +
Preference number: 4 (lower is better)
Translates to: KGPHYLSHLVHSSARAHRCVASV*KRAMAV
Trigger: CACAGCCATTGCCCTCTTCCAGACACTGGCCACGCA...TCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp GAACAAGGAGACACAGGCTGGTTCTGTGCTGGCCTTAAGACTATCTCCAGGTCCCCGATCCTCCTGCAGTaGCCGCAGAGGGTAGAGCTG +
Preference number: 4 (lower is better)
Translates to: EQGDTGWFCAGLKTISRSPILLQ*PQRVEL
Trigger: CAGCTCTACCCTCTGCGGCCACTGCAGGAGGATCGG...GGACCTGGAGATAGTCTTAAGGCCAGCACAGAACCAGCCTGTGTCTCCTTGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR TCA 90 bp CACAGCAGCAAATGGCCAGAGGCAGCTTCTCCCAAATCCAATCATGGACCACAGTGGGTACCGCCACATTaGGCATGTGGGTGGCTGCCA +
Preference number: 4 (lower is better)
Translates to: HSSKWPEAASPKSNHGPQWVPPH*ACGWLP
Trigger: TGGCAGCCACCCACATGCTCAATGTGGCGGTACCCA...CTGTGGTCCATGATTGGATTTGGGAGAAGCTGCCTCTGGCCATTTGCTGCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR TCA 90 bp GGGCAAGTCTCCAAGAGGGCAAAGGTCATTAAGACTGAGGGGCCTCAATTGGGGGAAGGGCCGACAGGATaGAGGACACCATCCAGATGC +
Preference number: 4 (lower is better)
Translates to: GQVSKRAKVIKTEGPQLGEGPTG*RTPSRC
Trigger: GCATCTGGATGGTGTCCTTCATCCTGTCGGCCCTTC...CCCCAATTGAGGCCCCTCAGTCTTAATGACCTTTGCCCTCTTGGAGACTTGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp CTGCAGAGGGAGAGGAGACAGGCCTGTCCACCACGTCTCAAGAACAAGGAGACAATGCCCATAACTGTGTaGACCGCCTGCTTCTTGGCG +
Preference number: 4 (lower is better)
Translates to: LQRERRQACPPRLKNKETMPITV*TACFLA
Trigger: CGCCAAGAAGCAGGCGGTGCACACAGTTATGGGCAT...TGTCTCCTTGTTCTTGAGACGTGGTGGACAGGCCTGTCTCCTCTCCCTCTGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp TTGTGCTTGGGGTCGTTCTACATGCTACACCTTGAGGTGAGGCAGCGGCAGTGCATGCCCATAACTGTGTaGACCGCCTGCTTCTTGGCG +
Preference number: 4 (lower is better)
Translates to: LCLGSFYMLHLEVRQRQCMPITV*TACFLA
Trigger: CGCCAAGAAGCAGGCGGTGCACACAGTTATGGGCAT...GCACTGCCGCTGCCTCACCTCAAGGTGTAGCATGTAGAACGACCCCAAGCACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp ATCCAAGGTGGCCAGTCGTCCCTCCAGGCGACACCAGAAGGAAAGAACTGTAAGAGAGGGCAATGGCTGTaGAGACCATGCCCATGGCCA +
Preference number: 4 (lower is better)
Translates to: IQGGQSSLQATPEGKNCKRGQWL*RPCPWP
Trigger: TGGCCATGGGCATGGTCTGCACAGCCATTGCCCTCT...CTTACAGTTCTTTCCTTCTGGTGTCGCCTGGAGGGACGACTGGCCACCTTGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp AGTGAAACCCAAGTGGTAAATTGGTCATTTGAGACCTGTGAGAGAGACAGTGGCAGCGTGGCAGGAAGGTaGGCAGCGGGACGGCTGCCC +
Preference number: 4 (lower is better)
Translates to: SETQVVNWSFETCERDSGSVAGR*AAGRLP
Trigger: GGGCAGCCGTCCCGCTGCCCACCTTCCTGCCACGCT...GCCACTGTCTCTCTCACAGGTCTCAAATGACCAATTTACCACTTGGGTTTCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp CCTACGCCCTGGTCTAGCCTCAGAGCTGTACAAAAAGTGCAGATGCCACTCGCTGGCTTCCACTTCTTCTaGTTGGCACCCACACTGAGG +
Preference number: 4 (lower is better)
Translates to: PTPWSSLRAVQKVQMPLAGFHFF*LAPTLR
Trigger: CCTCAGTGTGGGTGCCAAGCAGAAGAAGTGGAAGCC...AGCGAGTGGCATCTGCACTTTTTGTACAGCTCTGAGGCTAGACCAGGGCGTAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp CACAGCAGCAAATGGCCAGAGGCAGCTTCTCCCAAATCCAATCATGGACCACAGAGAGGGCAATGGCTGTaGAGACCATGCCCATGGCCA +
Preference number: 4 (lower is better)
Translates to: HSSKWPEAASPKSNHGPQRGQWL*RPCPWP
Trigger: TGGCCATGGGCATGGTCTGCACAGCCATTGCCCTCT...CTGTGGTCCATGATTGGATTTGGGAGAAGCTGCCTCTGGCCATTTGCTGCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp CCCTCATCCCCAGCTGTGGTTGGAAATCTGTCTGCAGAGGGAGAGGAGACAGGCTCTGTAGCGAAGTTCTaGCAGGCTCTGAGCCATCAA +
Preference number: 4 (lower is better)
Translates to: PSSPAVVGNLSAEGEETGSVAKF*QALSHQ
Trigger: TTGATGGCTCAGAGCCTGCCAGAACTTCGCTACAGA...GCCTGTCTCCTCTCCCTCTGCAGACAGATTTCCAACCACAGCTGGGGATGAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp TCAGGAGTGACTGAGGGGGACTATGTCCCCACTACAAGTATTGCCATTGAATACGGGCTGAAACAGGGCTaGCCTCCTGGAAACCCGCAC +
Preference number: 4 (lower is better)
Translates to: SGVTEGDYVPTTSIAIEYGLKQG*PPGNPH
Trigger: GTGCGGGTTTCCAGGAGGGCAGCCCTGTTTCAGCCC...GTATTCAATGGCAATACTTGTAGTGGGGACATAGTCCCCCTCAGTCACTCCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055754.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp GGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGACCGTGCTGCCCTCTAGACTaGTCTCATTGTCAGAATCTT +
Preference number: 4 (lower is better)
Translates to: GPHYLSHLVHSSARAHRPCCPLD*SHCQNL
Trigger: AAGATTCTGACAATGAGACCAGTCTAGAGGGCAGCA...CGGTCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
3UTR CAA 72 bp GCCGACATAGTGGGAGACAGGCAATATGGTGGAATTTaGAGCATGGGGACACTAACAGGGGTCCAGGTGGCT +
Preference number: 4 (lower is better)
Translates to: ADIVGDRQYGGI*SMGTLTGVQVA
Trigger: AGCCACCTGGACCCCTGTTAGTGTCCCCATGCTCAAAATTCCACCATATTGCCTGTCTCCCACTATGTCGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp ATCCAAGGTGGCCAGTCGTCCCTCCAGGCGACACCAGAAGGAAAGAACTGTAAGTCTGTAGCGAAGTTCTaGCAGGCTCTGAGCCATCAA +
Preference number: 4 (lower is better)
Translates to: IQGGQSSLQATPEGKNCKSVAKF*QALSHQ
Trigger: TTGATGGCTCAGAGCCTGCCAGAACTTCGCTACAGA...CTTACAGTTCTTTCCTTCTGGTGTCGCCTGGAGGGACGACTGGCCACCTTGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp CCCTCATCCCCAGCTGTGGTTGGAAATCTGTCTGCAGAGGGAGAGGAGACAGGCTGCTGCCCTCTAGACTaGTCTCATTGTCAGAATCTT +
Preference number: 4 (lower is better)
Translates to: PSSPAVVGNLSAEGEETGCCPLD*SHCQNL
Trigger: AAGATTCTGACAATGAGACCAGTCTAGAGGGCAGCA...GCCTGTCTCCTCTCCCTCTGCAGACAGATTTCCAACCACAGCTGGGGATGAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR TCA 90 bp TCAGGAGTGACTGAGGGGGACTATGTCCCCACTACAAGTATTGCCATTGAATACAGTTCTGGCAGGCTCTaGGCCATCAATGGAGGAGCG +
Preference number: 4 (lower is better)
Translates to: SGVTEGDYVPTTSIAIEYSSGRL*AINGGA
Trigger: CGCTCCTCCATTGATGGCTCAGAGCCTGCCAGAACT...GTATTCAATGGCAATACTTGTAGTGGGGACATAGTCCCCCTCAGTCACTCCTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp AGTGAAACCCAAGTGGTAAATTGGTCATTTGAGACCTGTGAGAGAGACAGTGGCGCGACGCTTGCCCTGTaGGTCTTCCACCACGATGGT +
Preference number: 4 (lower is better)
Translates to: SETQVVNWSFETCERDSGATLAL*VFHHDG
Trigger: ACCATCGTGGTGGAAGACGCACAGGGCAAGCGTCGC...GCCACTGTCTCTCTCACAGGTCTCAAATGACCAATTTACCACTTGGGTTTCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp ATGTCCCCACTACAAGTATTGCCATTGAATACAAAATACAGAGTGAAACCCAAGCGCTCGCTCGTGTCGTaGCAGCCAACGGCAGGAAGG +
Preference number: 4 (lower is better)
Translates to: MSPLQVLPLNTKYRVKPKRSLVS*QPTAGR
Trigger: CCTTCCTGCCGTTGGCTGGCACGACACGAGCGAGCG...CTTGGGTTTCACTCTGTATTTTGTATTCAATGGCAATACTTGTAGTGGGGACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp ATGTCCCCACTACAAGTATTGCCATTGAATACAAAATACAGAGTGAAACCCAAGAAGATGCGCTCAGGCTaGTCTGCAGGGGCCCCACGT +
Preference number: 4 (lower is better)
Translates to: MSPLQVLPLNTKYRVKPKKMRSG*SAGAPR
Trigger: ACGTGGGGCCCCTGCAGAGCAGCCTGAGCGCATCTT...CTTGGGTTTCACTCTGTATTTTGTATTCAATGGCAATACTTGTAGTGGGGACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp ATGTCCCCACTACAAGTATTGCCATTGAATACAAAATACAGAGTGAAACCCAAGTGCAGACCATGCCCATaGCCACGCTGCCTCCCACCA +
Preference number: 4 (lower is better)
Translates to: MSPLQVLPLNTKYRVKPKCRPCP*PRCLPP
Trigger: TGGTGGGAGGCAGCGTGGCCATGGGCATGGTCTGCA...CTTGGGTTTCACTCTGTATTTTGTATTCAATGGCAATACTTGTAGTGGGGACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR TCA 90 bp ATGTCCCCACTACAAGTATTGCCATTGAATACAAAATACAGAGTGAAACCCAAGTGGGTACCGCCACATTaGGCATGTGGGTGGCTGCCA +
Preference number: 4 (lower is better)
Translates to: MSPLQVLPLNTKYRVKPKWVPPH*ACGWLP
Trigger: TGGCAGCCACCCACATGCTCAATGTGGCGGTACCCA...CTTGGGTTTCACTCTGTATTTTGTATTCAATGGCAATACTTGTAGTGGGGACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp AGTGAAACCCAAGTGGTAAATTGGTCATTTGAGACCTGTGAGAGAGACAGTGGCTCTGTAGCGAAGTTCTaGCAGGCTCTGAGCCATCAA +
Preference number: 4 (lower is better)
Translates to: SETQVVNWSFETCERDSGSVAKF*QALSHQ
Trigger: TTGATGGCTCAGAGCCTGCCAGAACTTCGCTACAGA...GCCACTGTCTCTCTCACAGGTCTCAAATGACCAATTTACCACTTGGGTTTCACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp ATGTCCCCACTACAAGTATTGCCATTGAATACAAAATACAGAGTGAAACCCAAGGGCTTCCACTTCTTCTaGTTGGCACCCACACTGAGG +
Preference number: 4 (lower is better)
Translates to: MSPLQVLPLNTKYRVKPKGFHFF*LAPTLR
Trigger: CCTCAGTGTGGGTGCCAAGCAGAAGAAGTGGAAGCC...CTTGGGTTTCACTCTGTATTTTGTATTCAATGGCAATACTTGTAGTGGGGACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR GCA 90 bp ATGTCCCCACTACAAGTATTGCCATTGAATACAAAATACAGAGTGAAACCCAAGATGCCCATAACTGTGTaGACCGCCTGCTTCTTGGCG +
Preference number: 4 (lower is better)
Translates to: MSPLQVLPLNTKYRVKPKMPITV*TACFLA
Trigger: CGCCAAGAAGCAGGCGGTGCACACAGTTATGGGCAT...CTTGGGTTTCACTCTGTATTTTGTATTCAATGGCAATACTTGTAGTGGGGACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CCA 90 bp AGTGAAACCCAAGTGGTAAATTGGTCATTTGAGACCTGTGAGAGAGACAGTGGCTGCTGCCCTCTAGACTaGTCTCATTGTCAGAATCTT +
Preference number: 4 (lower is better)
Translates to: SETQVVNWSFETCERDSGCCPLD*SHCQNL
Trigger: AAGATTCTGACAATGAGACCAGTCTAGAGGGCAGCA...GCCACTGTCTCTCTCACAGGTCTCAAATGACCAATTTACCACTTGGGTTTCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS CCA 90 bp CTCAGCAGGCTCCGCGCTGTCCCGGGCAGCGGGGAAGGGTTGTGCTaGGGCGGGCACGCGACGCAGAGCCTGCGGCTCGCGCTCGAAGGC +
Preference number: 5 (lower is better)
Translates to: LSRLRAVPGSGEGLC*GGHATQSLRLALEG
Trigger: GCCTTCGAGCGCGAGCCGCAGGCTCTGCGTCGCGTGCCCGCCCCAGCACAACCCTTCCCCGCTGCCCGGGACAGCGCGGAGCCTGCTGAG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS TCA 90 bp GGGAGAACCGCCGGGTGGGCGGGACCTGCGAGCACCCGGCCGGGCTaGAACAGGGCTGCCCTCCTGGAAACCCGCACCGATGCCTCCCCG +
Preference number: 5 (lower is better)
Translates to: GRTAGWAGPASTRPG*NRAALLETRTDASP
Trigger: CGGGGAGGCATCGGTGCGGGTTTCCAGGAGGGCAGCCCTGTTTCAGCCCGGCCGGGTGCTCGCAGGTCCCGCCCACCCGGCGGTTCTCCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055754.8
ENSMUST00000105651.8
CDS GCA 90 bp CGGGTGGGCGGGACCTGCGAGCACCCGGCCGGGCTGAAACAGGGCTaGCCTCCTGGAAACCCGCACCGATGCCTCCCCGCGCCCTGCAGA +
Preference number: 5 (lower is better)
Translates to: RVGGTCEHPAGLKQG*PPGNPHRCLPAPCR
Trigger: TCTGCAGGGCGCGGGGAGGCATCGGTGCGGGTTTCCAGGAGGGCAGCCCTGTTTCAGCCCGGCCGGGTGCTCGCAGGTCCCGCCCACCCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055754.8
ENSMUST00000105651.8
CDS GCA 90 bp GCAGCGGGGAAGGGTTGTGCTGGGGCGGGCACGCGACGCAGAGCCTaGGGCTCGCGCTCGAAGGCGGTCAGCGCGAAGGCGTCGGGCAGT +
Preference number: 5 (lower is better)
Translates to: AAGKGCAGAGTRRRA*GSRSKAVSAKASGS
Trigger: ACTGCCCGACGCCTTCGCGCTGACCGCCTTCGAGCGCGAGCCGCAGGCTCTGCGTCGCGTGCCCGCCCCAGCACAACCCTTCCCCGCTGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS GCA 90 bp GACCTCAGCAGGCTCCGCGCTGTCCCGGGCAGCGGGGAAGGGTTGTaGTGGGGCGGGCACGCGACGCAGAGCCTGCGGCTCGCGCTCGAA +
Preference number: 5 (lower is better)
Translates to: DLSRLRAVPGSGEGL*WGGHATQSLRLALE
Trigger: TTCGAGCGCGAGCCGCAGGCTCTGCGTCGCGTGCCCGCCCCAGCACAACCCTTCCCCGCTGCCCGGGACAGCGCGGAGCCTGCTGAGGTC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS CCA 90 bp AGGAAGGTGGGCAGCGGGACGGCTGCCCACACGTCGGCATCATCGTaGGAGAACCGCCGGGTGGGCGGGACCTGCGAGCACCCGGCCGGG +
Preference number: 5 (lower is better)
Translates to: RKVGSGTAAHTSASS*ENRRVGGTCEHPAG
Trigger: CCCGGCCGGGTGCTCGCAGGTCCCGCCCACCCGGCGGTTCTCCCACGATGATGCCGACGTGTGGGCAGCCGTCCCGCTGCCCACCTTCCT
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055754.8
ENSMUST00000105651.8
CDS GCA 90 bp CTCGCCCGAGCTCCAGCGTGGCAGGAAGGTGGGCAGCGGGACGGCTaGCCACACGTCGGCATCATCGTGGGAGAACCGCCGGGTGGGCGG +
Preference number: 5 (lower is better)
Translates to: LARAPAWQEGGQRDG*PHVGIIVGEPPGGR
Trigger: CCGCCCACCCGGCGGTTCTCCCACGATGATGCCGACGTGTGGGCAGCCGTCCCGCTGCCCACCTTCCTGCCACGCTGGAGCTCGGGCGAG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS TCA 90 bp AGCGACGCTTGCCCTGTGCGTCTTCCACCACGATGGTGGGCACGGTaGAGGTGCGGCGGTCAGCCCGGTGCCCCACCTGCGTGGCCAGTG +
Preference number: 5 (lower is better)
Translates to: SDACPVRLPPRWWAR*RCGGQPGAPPAWPV
Trigger: CACTGGCCACGCAGGTGGGGCACCGGGCTGACCGCCGCACCTTCACCGTGCCCACCATCGTGGTGGAAGACGCACAGGGCAAGCGTCGCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS GCA 90 bp CACACGTCGGCATCATCGTGGGAGAACCGCCGGGTGGGCGGGACCTaGGAGCACCCGGCCGGGCTGAAACAGGGCTGCCCTCCTGGAAAC +
Preference number: 5 (lower is better)
Translates to: HTSASSWENRRVGGT*EHPAGLKQGCPPGN
Trigger: GTTTCCAGGAGGGCAGCCCTGTTTCAGCCCGGCCGGGTGCTCGCAGGTCCCGCCCACCCGGCGGTTCTCCCACGATGATGCCGACGTGTG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055754.8
ENSMUST00000105651.8
CDS CCA 90 bp CGGGACCTGCGAGCACCCGGCCGGGCTGAAACAGGGCTGCCCTCCTaGAAACCCGCACCGATGCCTCCCCGCGCCCTGCAGATACTGCAT +
Preference number: 5 (lower is better)
Translates to: RDLRAPGRAETGLPS*KPAPMPPRALQILH
Trigger: ATGCAGTATCTGCAGGGCGCGGGGAGGCATCGGTGCGGGTTTCCAGGAGGGCAGCCCTGTTTCAGCCCGGCCGGGTGCTCGCAGGTCCCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055754.8
ENSMUST00000105651.8
CDS GCA 90 bp GAGGGCGAGCTCAGAAAGCTGCTAATGCTGCCGCAGCCCGCCGCGTaGAAGCCGCCTGGCTCGCCCCAAGATGCGCTCAGGCTGCTCTGC +
Preference number: 5 (lower is better)
Translates to: EGELRKLLMLPQPAA*KPPGSPQDALRLLC
Trigger: GCAGAGCAGCCTGAGCGCATCTTGGGGCGAGCCAGGCGGCTTGCACGCGGCGGGCTGCGGCAGCATTAGCAGCTTTCTGAGCTCGCCCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS CCA 90 bp CCAGAGCTGCCAAGTCCTCGCCCGAGCTCCAGCGTGGCAGGAAGGTaGGCAGCGGGACGGCTGCCCACACGTCGGCATCATCGTGGGAGA +
Preference number: 5 (lower is better)
Translates to: PELPSPRPSSSVAGR*AAGRLPTRRHHRGR
Trigger: TCTCCCACGATGATGCCGACGTGTGGGCAGCCGTCCCGCTGCCCACCTTCCTGCCACGCTGGAGCTCGGGCGAGGACTTGGCAGCTCTGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS GCA 90 bp TCCACCACGATGGTGGGCACGGTGAAGGTGCGGCGGTCAGCCCGGTaGCCCACCTGCGTGGCCAGTGTCTGGAAGAGGGCAATGGCTGTG +
Preference number: 5 (lower is better)
Translates to: STTMVGTVKVRRSAR*PTCVASVWKRAMAV
Trigger: CACAGCCATTGCCCTCTTCCAGACACTGGCCACGCAGGTGGGGCACCGGGCTGACCGCCGCACCTTCACCGTGCCCACCATCGTGGTGGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS CCA 90 bp CAGCCCGGTGCCCCACCTGCGTGGCCAGTGTCTGGAAGAGGGCAATaGCTGTGCAGACCATGCCCATGGCCACGCTGCCTCCCACCAGCA +
Preference number: 5 (lower is better)
Translates to: QPGAPPAWPVSGRGQ*LCRPCPWPRCLPPA
Trigger: TGCTGGTGGGAGGCAGCGTGGCCATGGGCATGGTCTGCACAGCCATTGCCCTCTTCCAGACACTGGCCACGCAGGTGGGGCACCGGGCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS CCA 90 bp AAGGTGCGGCGGTCAGCCCGGTGCCCCACCTGCGTGGCCAGTGTCTaGAAGAGGGCAATGGCTGTGCAGACCATGCCCATGGCCACGCTG +
Preference number: 5 (lower is better)
Translates to: KVRRSARCPTCVASV*KRAMAVQTMPMATL
Trigger: CAGCGTGGCCATGGGCATGGTCTGCACAGCCATTGCCCTCTTCCAGACACTGGCCACGCAGGTGGGGCACCGGGCTGACCGCCGCACCTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS CCA 90 bp GGACGGCTGCCCACACGTCGGCATCATCGTGGGAGAACCGCCGGGTaGGCGGGACCTGCAGATACTGCATCCGATCCTCCTGCAGTGGCC +
Preference number: 5 (lower is better)
Translates to: GRLPTRRHHRGRTAG*AGPADTASDPPAVA
Trigger: GGCCACTGCAGGAGGATCGGATGCAGTATCTGCAGGTCCCGCCCACCCGGCGGTTCTCCCACGATGATGCCGACGTGTGGGCAGCCGTCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105650.8
CDS CCA 90 bp AGGAAGGTGGGCAGCGGGACGGCTGCCCACACGTCGGCATCATCGTaGGAGAACCGCCGGGTGGGCGGGACCTGCAGATACTGCATCCGA +
Preference number: 5 (lower is better)
Translates to: RKVGSGTAAHTSASS*ENRRVGGTCRYCIR
Trigger: TCGGATGCAGTATCTGCAGGTCCCGCCCACCCGGCGGTTCTCCCACGATGATGCCGACGTGTGGGCAGCCGTCCCGCTGCCCACCTTCCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105650.8
CDS GCA 90 bp ATGGTGGGCACGGTGAAGGTGCGGCGGTCAGCCCGGTGCCCCACCTaGGTGGCCAGTGTCTGGAAGAGGGCAATGGCTGTGCAGACCATG +
Preference number: 5 (lower is better)
Translates to: MVGTVKVRRSARCPT*VASVWKRAMAVQTM
Trigger: CATGGTCTGCACAGCCATTGCCCTCTTCCAGACACTGGCCACGCAGGTGGGGCACCGGGCTGACCGCCGCACCTTCACCGTGCCCACCAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CAA 90 bp CATGGTGGTCGGGTCTCAGGGTTCCCTACGCCCTGGTCTAGCCTCAGAGCTGTAGGCCACCAGGGGGCGTaGGGACCTCAGCAGGCTCCG +
Preference number: 5 (lower is better)
Translates to: HGGRVSGFPTPWSSLRAVGHQGA*GPQQAP
Trigger: CGGAGCCTGCTGAGGTCCCAACGCCCCCTGGTGGCC...TACAGCTCTGAGGCTAGACCAGGGCGTAGGGAACCCTGAGACCCGACCACCATG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS TCA 90 bp GCAGCAAGAAGCAGACGCCGAAGCCCAGGCCAATCTCGGCCACGATaGAGCGGCAGCCGTGGGTGTAGAAACGCTCGCTCGTGTCGTGCC +
Preference number: 5 (lower is better)
Translates to: AARSRRRSPGQSRPR*SGSRGCRNARSCRA
Trigger: GGCACGACACGAGCGAGCGTTTCTACACCCACGGCTGCCGCTTCATCGTGGCCGAGATTGGCCTGGGCTTCGGCGTCTGCTTCTTGCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CAA 90 bp GGGCTGGGTGGTGGTATAGAGATAGCTAGAGCTGTCAGCAAACAGGGAGGCTGGGGCCACCAGGGGGCGTaGGGACCTCAGCAGGCTCCG +
Preference number: 5 (lower is better)
Translates to: GLGGGIEIARAVSKQGGWGHQGA*GPQQAP
Trigger: CGGAGCCTGCTGAGGTCCCAACGCCCCCTGGTGGCC...CCAGCCTCCCTGTTTGCTGACAGCTCTAGCTATCTCTATACCACCACCCAGCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CAA 90 bp AAGGGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGAGGCCACCAGGGGGCGTaGGGACCTCAGCAGGCTCCG +
Preference number: 5 (lower is better)
Translates to: KGPHYLSHLVHSSARAHRGHQGA*GPQQAP
Trigger: CGGAGCCTGCTGAGGTCCCAACGCCCCCTGGTGGCC...TCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCCCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS GCA 90 bp TCTGGAAGAGGGCAATGGCTGTGCAGACCATGCCCATGGCCACGCTaGCTCCCACCAGCAGCAAGAAGCAGACGCCGAAGCCCAGGCCAA +
Preference number: 5 (lower is better)
Translates to: SGRGQWLCRPCPWPR*LPPAARSRRRSPGQ
Trigger: TTGGCCTGGGCTTCGGCGTCTGCTTCTTGCTGCTGGTGGGAGGCAGCGTGGCCATGGGCATGGTCTGCACAGCCATTGCCCTCTTCCAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CAA 90 bp CCACGAGCTTTGGTTCTCTGCGATAGGCACCAGCAGCCTTCACAGCAGGACCACCTCGTAGTCGGGACGTaGCCTCCGCAGCTGCACCAC +
Preference number: 5 (lower is better)
Translates to: PRALVLCDRHQQPSQQDHLVVGT*PPQLHH
Trigger: GTGGTGCAGCTGCGGAGGCAACGTCCCGACTACGAG...GTGGTCCTGCTGTGAAGGCTGCTGGTGCCTATCGCAGAGAACCAAAGCTCGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CAA 90 bp GGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGACCGATGGAGGAGCGACGCTaGCCCTGTGCGTCTTCCACC +
Preference number: 5 (lower is better)
Translates to: GPHYLSHLVHSSARAHRPMEERR*PCASST
Trigger: GGTGGAAGACGCACAGGGCAAGCGTCGCTCCTCCAT...CGGTCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CAA 90 bp CCACGAGCTTTGGTTCTCTGCGATAGGCACCAGCAGCCTTCACAGCAGGACCACAGGATGCCCCAGGCGTaGGCTAGCAGCGACAGACCT +
Preference number: 5 (lower is better)
Translates to: PRALVLCDRHQQPSQQDHRMPQA*ASSDRP
Trigger: AGGTCTGTCGCTGCTAGCCAACGCCTGGGGCATCCT...GTGGTCCTGCTGTGAAGGCTGCTGGTGCCTATCGCAGAGAACCAAAGCTCGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CAA 90 bp TTGTGCTTGGGGTCGTTCTACATGCTACACCTTGAGGTGAGGCAGCGGCAGTGCCTCGTAGTCGGGACGTaGCCTCCGCAGCTGCACCAC +
Preference number: 5 (lower is better)
Translates to: LCLGSFYMLHLEVRQRQCLVVGT*PPQLHH
Trigger: GTGGTGCAGCTGCGGAGGCAACGTCCCGACTACGAG...GCACTGCCGCTGCCTCACCTCAAGGTGTAGCATGTAGAACGACCCCAAGCACAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CAA 90 bp AAGGGCCCTCACTACCTCTCACACCTGGTCCATTCAAGTGCGAGGGCACACAGAAGGATGCCCCAGGCGTaGGCTAGCAGCGACAGACCT +
Preference number: 5 (lower is better)
Translates to: KGPHYLSHLVHSSARAHRRMPQA*ASSDRP
Trigger: AGGTCTGTCGCTGCTAGCCAACGCCTGGGGCATCCT...TCTGTGTGCCCTCGCACTTGAATGGACCAGGTGTGAGAGGTAGTGAGGGCCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CAA 90 bp AGGCCTGTCCACCACGTCTCAAGAACAAGGAGACACAGGCTGGTTCTGTGCTGGAGGATGCCCCAGGCGTaGGCTAGCAGCGACAGACCT +
Preference number: 5 (lower is better)
Translates to: RPVHHVSRTRRHRLVLCWRMPQA*ASSDRP
Trigger: AGGTCTGTCGCTGCTAGCCAACGCCTGGGGCATCCT...CCAGCACAGAACCAGCCTGTGTCTCCTTGTTCTTGAGACGTGGTGGACAGGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CAA 90 bp TTGTGCTTGGGGTCGTTCTACATGCTACACCTTGAGGTGAGGCAGCGGCAGTGCATGGAGGAGCGACGCTaGCCCTGTGCGTCTTCCACC +
Preference number: 5 (lower is better)
Translates to: LCLGSFYMLHLEVRQRQCMEERR*PCASST
Trigger: GGTGGAAGACGCACAGGGCAAGCGTCGCTCCTCCAT...GCACTGCCGCTGCCTCACCTCAAGGTGTAGCATGTAGAACGACCCCAAGCACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS CCA 90 bp TGCACCACAGCATATGTGGCGATGGGTACCGCCACATTGAGCATGTaGGTGGCTGCCAGCGTGCAAAGCAAGAACTCCAGCGGCTTCCAC +
Preference number: 5 (lower is better)
Translates to: CTTAYVAMGTATLSM*VAASVQSKNSSGFH
Trigger: GTGGAAGCCGCTGGAGTTCTTGCTTTGCACGCTGGCAGCCACCCACATGCTCAATGTGGCGGTACCCATCGCCACATATGCTGTGGTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CAA 90 bp ATCCAAGGTGGCCAGTCGTCCCTCCAGGCGACACCAGAAGGAAAGAACTGTAAGATGGAGGAGCGACGCTaGCCCTGTGCGTCTTCCACC +
Preference number: 5 (lower is better)
Translates to: IQGGQSSLQATPEGKNCKMEERR*PCASST
Trigger: GGTGGAAGACGCACAGGGCAAGCGTCGCTCCTCCAT...CTTACAGTTCTTTCCTTCTGGTGTCGCCTGGAGGGACGACTGGCCACCTTGGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CAA 90 bp TGTCTGCAGAGGGAGAGGAGACAGGCCTGTCCACCACGTCTCAAGAACAAGGAGTTCCACTTCTTCTGCTaGGCACCCACACTGAGGATG +
Preference number: 5 (lower is better)
Translates to: CLQRERRQACPPRLKNKEFHFFC*APTLRM
Trigger: CATCCTCAGTGTGGGTGCCAAGCAGAAGAAGTGGAA...CTCCTTGTTCTTGAGACGTGGTGGACAGGCCTGTCTCCTCTCCCTCTGCAGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CAA 90 bp GGGCTGGGTGGTGGTATAGAGATAGCTAGAGCTGTCAGCAAACAGGGAGGCTGGTTCCACTTCTTCTGCTaGGCACCCACACTGAGGATG +
Preference number: 5 (lower is better)
Translates to: GLGGGIEIARAVSKQGGWFHFFC*APTLRM
Trigger: CATCCTCAGTGTGGGTGCCAAGCAGAAGAAGTGGAA...CCAGCCTCCCTGTTTGCTGACAGCTCTAGCTATCTCTATACCACCACCCAGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS GCA 90 bp AGAATCTTCGTCGTTGGCCATAAGGGCCACACACTTCTCCCAGACTaGCTTGAGATCCGCCCGGTAACGATCACAAGTCCAGAGGAACAG +
Preference number: 5 (lower is better)
Translates to: RIFVVGHKGHTLLPD*LEIRPVTITSPEEQ
Trigger: CTGTTCCTCTGGACTTGTGATCGTTACCGGGCGGATCTCAAGGCAGTCTGGGAGAAGTGTGTGGCCCTTATGGCCAACGACGAAGATTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS-3UTR CAA 90 bp AGTGAAACCCAAGTGGTAAATTGGTCATTTGAGACCTGTGAGAGAGACAGTGGCCTCGTAGTCGGGACGTaGCCTCCGCAGCTGCACCAC +
Preference number: 5 (lower is better)
Translates to: SETQVVNWSFETCERDSGLVVGT*PPQLHH
Trigger: GTGGTGCAGCTGCGGAGGCAACGTCCCGACTACGAG...GCCACTGTCTCTCTCACAGGTCTCAAATGACCAATTTACCACTTGGGTTTCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS GCA 90 bp AGCTATAGTCAAGAGAGCGCTCCAATACCATGTCGGGGGAGATGCTaGCCTCTAGACTGGTCTCATTGTCAGAATCTTCGTCGTTGGCCA +
Preference number: 5 (lower is better)
Translates to: SYSQESAPIPCRGRC*PLDWSHCQNLRRWP
Trigger: TGGCCAACGACGAAGATTCTGACAATGAGACCAGTCTAGAGGGCAGCATCTCCCCCGACATGGTATTGGAGCGCTCTCTTGACTATAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS GCA 90 bp CATAGCTATAGTCAAGAGAGCGCTCCAATACCATGTCGGGGGAGATaGTGCCCTCTAGACTGGTCTCATTGTCAGAATCTTCGTCGTTGG +
Preference number: 5 (lower is better)
Translates to: HSYSQESAPIPCRGR*CPLDWSHCQNLRRW
Trigger: CCAACGACGAAGATTCTGACAATGAGACCAGTCTAGAGGGCAGCATCTCCCCCGACATGGTATTGGAGCGCTCTCTTGACTATAGCTATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS TCA 72 bp CGGCGACGCGGGCTGCCGGGAGGCGAGTCCTGCGCGTaGCGCGGGCCGCCGTCTAGGGACGAGGGCTGCAGG +
Preference number: 6 (lower is better)
Translates to: RRRGLPGGESCA*RGPPSRDEGCR
Trigger: CCTGCAGCCCTCGTCCCTAGACGGCGGCCCGCGTCACGCGCAGGACTCGCCTCCCGGCAGCCCGCGTCGCCG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS GCA 72 bp ATGCGCTCAGGCTGCTCTGCAGGGGCCCCACGTGCGTaGGCGCGGCCCGGCGTCCCTGGCTGCGTTGCGTAC +
Preference number: 6 (lower is better)
Translates to: MRSGCSAGAPRA*ARPGVPGCVAY
Trigger: GTACGCAACGCAGCCAGGGACGCCGGGCCGCGCGCACGCACGTGGGGCCCCTGCAGAGCAGCCTGAGCGCAT
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS GCA 72 bp CAAGATGCGCTCAGGCTGCTCTGCAGGGGCCCCACGTaGGTGCGCGCGGCCCGGCGTCCCTGGCTGCGTTGC +
Preference number: 6 (lower is better)
Translates to: QDALRLLCRGPT*VRAARRPWLRC
Trigger: GCAACGCAGCCAGGGACGCCGGGCCGCGCGCACGCACGTGGGGCCCCTGCAGAGCAGCCTGAGCGCATCTTG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS TCA 72 bp GCCGGGTGGGCGGGACCTGCGAGCACCCGGCCGGGCTaGAACAGGGCTGCCCTCCTGGAAACCCGCACCGAT +
Preference number: 6 (lower is better)
Translates to: AGWAGPASTRPG*NRAALLETRTD
Trigger: ATCGGTGCGGGTTTCCAGGAGGGCAGCCCTGTTTCAGCCCGGCCGGGTGCTCGCAGGTCCCGCCCACCCGGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055754.8
ENSMUST00000105651.8
CDS GCA 72 bp GGGACCTGCGAGCACCCGGCCGGGCTGAAACAGGGCTaGCCTCCTGGAAACCCGCACCGATGCCTCCCCGCG +
Preference number: 6 (lower is better)
Translates to: GTCEHPAGLKQG*PPGNPHRCLPA
Trigger: CGCGGGGAGGCATCGGTGCGGGTTTCCAGGAGGGCAGCCCTGTTTCAGCCCGGCCGGGTGCTCGCAGGTCCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055754.8
ENSMUST00000105651.8
CDS GCA 72 bp AAGGGTTGTGCTGGGGCGGGCACGCGACGCAGAGCCTaGGGCTCGCGCTCGAAGGCGGTCAGCGCGAAGGCG +
Preference number: 6 (lower is better)
Translates to: KGCAGAGTRRRA*GSRSKAVSAKA
Trigger: CGCCTTCGCGCTGACCGCCTTCGAGCGCGAGCCGCAGGCTCTGCGTCGCGTGCCCGCCCCAGCACAACCCTT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS CCA 72 bp CGAGCACCCGGCCGGGCTGAAACAGGGCTGCCCTCCTaGAAACCCGCACCGATGCCTCCCCGCGCCCTGCAG +
Preference number: 6 (lower is better)
Translates to: RAPGRAETGLPS*KPAPMPPRALQ
Trigger: CTGCAGGGCGCGGGGAGGCATCGGTGCGGGTTTCCAGGAGGGCAGCCCTGTTTCAGCCCGGCCGGGTGCTCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055754.8
ENSMUST00000105651.8
CDS CCA 72 bp GGCAGCGGGACGGCTGCCCACACGTCGGCATCATCGTaGGAGAACCGCCGGGTGGGCGGGACCTGCGAGCAC +
Preference number: 6 (lower is better)
Translates to: GSGTAAHTSASS*ENRRVGGTCEH
Trigger: GTGCTCGCAGGTCCCGCCCACCCGGCGGTTCTCCCACGATGATGCCGACGTGTGGGCAGCCGTCCCGCTGCC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055754.8
ENSMUST00000105651.8
CDS GCA 72 bp GCTCCAGCGTGGCAGGAAGGTGGGCAGCGGGACGGCTaGCCACACGTCGGCATCATCGTGGGAGAACCGCCG +
Preference number: 6 (lower is better)
Translates to: APAWQEGGQRDG*PHVGIIVGEPP
Trigger: CGGCGGTTCTCCCACGATGATGCCGACGTGTGGGCAGCCGTCCCGCTGCCCACCTTCCTGCCACGCTGGAGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS CCA 72 bp GGCAGCGGGACGGCTGCCCACACGTCGGCATCATCGTaGGAGAACCGCCGGGTGGGCGGGACCTGCAGATAC +
Preference number: 6 (lower is better)
Translates to: GSGTAAHTSASS*ENRRVGGTCRY
Trigger: GTATCTGCAGGTCCCGCCCACCCGGCGGTTCTCCCACGATGATGCCGACGTGTGGGCAGCCGTCCCGCTGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105650.8
CDS GCA 72 bp ATGGTGGGCACGGTGAAGGTGCGGCGGTCAGCCCGGTaGCCCACCTGCGTGGCCAGTGTCTGGAAGAGGGCA +
Preference number: 6 (lower is better)
Translates to: MVGTVKVRRSAR*PTCVASVWKRA
Trigger: TGCCCTCTTCCAGACACTGGCCACGCAGGTGGGGCACCGGGCTGACCGCCGCACCTTCACCGTGCCCACCAT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS CCA 72 bp CCAAGTCCTCGCCCGAGCTCCAGCGTGGCAGGAAGGTaGGCAGCGGGACGGCTGCCCACACGTCGGCATCAT +
Preference number: 6 (lower is better)
Translates to: PSPRPSSSVAGR*AAGRLPTRRHH
Trigger: ATGATGCCGACGTGTGGGCAGCCGTCCCGCTGCCCACCTTCCTGCCACGCTGGAGCTCGGGCGAGGACTTGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS GCA 72 bp ACGGTGAAGGTGCGGCGGTCAGCCCGGTGCCCCACCTaGGTGGCCAGTGTCTGGAAGAGGGCAATGGCTGTG +
Preference number: 6 (lower is better)
Translates to: TVKVRRSARCPT*VASVWKRAMAV
Trigger: CACAGCCATTGCCCTCTTCCAGACACTGGCCACGCAGGTGGGGCACCGGGCTGACCGCCGCACCTTCACCGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS GCA 72 bp CTCAGAAAGCTGCTAATGCTGCCGCAGCCCGCCGCGTaGAAGCCGCCTGGCTCGCCCCAAGATGCGCTCAGG +
Preference number: 6 (lower is better)
Translates to: LRKLLMLPQPAA*KPPGSPQDALR
Trigger: CCTGAGCGCATCTTGGGGCGAGCCAGGCGGCTTGCACGCGGCGGGCTGCGGCAGCATTAGCAGCTTTCTGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS GCA 72 bp GCATCATCGTGGGAGAACCGCCGGGTGGGCGGGACCTaGAGATACTGCATCCGATCCTCCTGCAGTGGCCGC +
Preference number: 6 (lower is better)
Translates to: ASSWENRRVGGT*RYCIRSSCSGR
Trigger: GCGGCCACTGCAGGAGGATCGGATGCAGTATCTGCAGGTCCCGCCCACCCGGCGGTTCTCCCACGATGATGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105650.8
CDS CCA 72 bp GCCCCACCTGCGTGGCCAGTGTCTGGAAGAGGGCAATaGCTGTGCAGACCATGCCCATGGCCACGCTGCCTC +
Preference number: 6 (lower is better)
Translates to: APPAWPVSGRGQ*LCRPCPWPRCL
Trigger: GAGGCAGCGTGGCCATGGGCATGGTCTGCACAGCCATTGCCCTCTTCCAGACACTGGCCACGCAGGTGGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS TCA 72 bp AGCAGACGCCGAAGCCCAGGCCAATCTCGGCCACGATaGAGCGGCAGCCGTGGGTGTAGAAACGCTCGCTCG +
Preference number: 6 (lower is better)
Translates to: SRRRSPGQSRPR*SGSRGCRNARS
Trigger: CGAGCGAGCGTTTCTACACCCACGGCTGCCGCTTCATCGTGGCCGAGATTGGCCTGGGCTTCGGCGTCTGCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS GCA 72 bp CTGAAACAGGGCTGCCCTCCTGGAAACCCGCACCGATaGCTCCCCGCGCCCTGCAGATACTGCATCCGATCC +
Preference number: 6 (lower is better)
Translates to: LKQGCPPGNPHR*LPAPCRYCIRS
Trigger: GGATCGGATGCAGTATCTGCAGGGCGCGGGGAGGCATCGGTGCGGGTTTCCAGGAGGGCAGCCCTGTTTCAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055754.8
ENSMUST00000105651.8
CDS CCA 72 bp CCCACACGTCGGCATCATCGTGGGAGAACCGCCGGGTaGGCGGGACCTGCAGATACTGCATCCGATCCTCCT +
Preference number: 6 (lower is better)
Translates to: PTRRHHRGRTAG*AGPADTASDPP
Trigger: AGGAGGATCGGATGCAGTATCTGCAGGTCCCGCCCACCCGGCGGTTCTCCCACGATGATGCCGACGTGTGGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105650.8
CDS GCA 72 bp TGGCAGGCTCTGAGCCATCAATGGAGGAGCGACGCTTaGCCTGTGCGTCTTCCACCACGATGGTGGGCACGG +
Preference number: 6 (lower is better)
Translates to: WQALSHQWRSDA*PVRLPPRWWAR
Trigger: CCGTGCCCACCATCGTGGTGGAAGACGCACAGGGCAAGCGTCGCTCCTCCATTGATGGCTCAGAGCCTGCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS CAA 72 bp CTGGCAGGCTCTGAGCCATCAATGGAGGAGCGACGCTaGCCCTGTGCGTCTTCCACCACGATGGTGGGCACG +
Preference number: 6 (lower is better)
Translates to: LAGSEPSMEERR*PCASSTTMVGT
Trigger: CGTGCCCACCATCGTGGTGGAAGACGCACAGGGCAAGCGTCGCTCCTCCATTGATGGCTCAGAGCCTGCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS TCA 72 bp CCAGCGGCTTCCACTTCTTCTGCTTGGCACCCACACTaGGGATGCCCCAGGCGTTGGCTAGCAGCGACAGAC +
Preference number: 6 (lower is better)
Translates to: PAASTSSAWHPH*GCPRRWLAATD
Trigger: GTCTGTCGCTGCTAGCCAACGCCTGGGGCATCCTCAGTGTGGGTGCCAAGCAGAAGAAGTGGAAGCCGCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS CAA 90 bp AGCGAAGTTCTGGCAGGCTCTGAGCCATCAATGGAGGAGCGACGCTaGCCCTGTGCGTCTTCCACCACGATGGTGGGCACGGTGAAGGTG +
Preference number: 6 (lower is better)
Translates to: SEVLAGSEPSMEERR*PCASSTTMVGTVKV
Trigger: CACCTTCACCGTGCCCACCATCGTGGTGGAAGACGCACAGGGCAAGCGTCGCTCCTCCATTGATGGCTCAGAGCCTGCCAGAACTTCGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS GCA 72 bp GGCGATGGGTACCGCCACATTGAGCATGTGGGTGGCTaGCAGCGTGCAAAGCAAGAACTCCAGCGGCTTCCA +
Preference number: 6 (lower is better)
Translates to: GDGYRHIEHVGG*QRAKQELQRLP
Trigger: TGGAAGCCGCTGGAGTTCTTGCTTTGCACGCTGGCAGCCACCCACATGCTCAATGTGGCGGTACCCATCGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS CAA 72 bp TTCTGCTTGGCACCCACACTGAGGATGCCCCAGGCGTaGGCTAGCAGCGACAGACCTCCGCATGCTAGCCAA +
Preference number: 6 (lower is better)
Translates to: FCLAPTLRMPQA*ASSDRPPHASQ
Trigger: TTGGCTAGCATGCGGAGGTCTGTCGCTGCTAGCCAACGCCTGGGGCATCCTCAGTGTGGGTGCCAAGCAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS CAA 90 bp TTCCACTTCTTCTGCTTGGCACCCACACTGAGGATGCCCCAGGCGTaGGCTAGCAGCGACAGACCTCCGCATGCTAGCCAACCTACCGCA +
Preference number: 6 (lower is better)
Translates to: FHFFCLAPTLRMPQA*ASSDRPPHASQPTA
Trigger: TGCGGTAGGTTGGCTAGCATGCGGAGGTCTGTCGCTGCTAGCCAACGCCTGGGGCATCCTCAGTGTGGGTGCCAAGCAGAAGAAGTGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS TCA 72 bp GCACCACAGCATATGTGGCGATGGGTACCGCCACATTaGGCATGTGGGTGGCTGCCAGCGTGCAAAGCAAGA +
Preference number: 6 (lower is better)
Translates to: APQHMWRWVPPH*ACGWLPACKAR
Trigger: TCTTGCTTTGCACGCTGGCAGCCACCCACATGCTCAATGTGGCGGTACCCATCGCCACATATGCTGTGGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS CCA 72 bp GCATATGTGGCGATGGGTACCGCCACATTGAGCATGTaGGTGGCTGCCAGCGTGCAAAGCAAGAACTCCAGC +
Preference number: 6 (lower is better)
Translates to: AYVAMGTATLSM*VAASVQSKNSS
Trigger: GCTGGAGTTCTTGCTTTGCACGCTGGCAGCCACCCACATGCTCAATGTGGCGGTACCCATCGCCACATATGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS CCA 72 bp TCTGTAGCGAAGTTCTGGCAGGCTCTGAGCCATCAATaGAGGAGCGACGCTTGCCCTGTGCGTCTTCCACCA +
Preference number: 6 (lower is better)
Translates to: SVAKFWQALSHQ*RSDACPVRLPP
Trigger: TGGTGGAAGACGCACAGGGCAAGCGTCGCTCCTCCATTGATGGCTCAGAGCCTGCCAGAACTTCGCTACAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS GCA 72 bp GTCGTTGGCCATAAGGGCCACACACTTCTCCCAGACTaGCTTGAGATCCGCCCGGTAACGATCACAAGTCCA +
Preference number: 6 (lower is better)
Translates to: VVGHKGHTLLPD*LEIRPVTITSP
Trigger: TGGACTTGTGATCGTTACCGGGCGGATCTCAAGGCAGTCTGGGAGAAGTGTGTGGCCCTTATGGCCAACGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS CAA 72 bp ATGTCGGGGGAGATGCTGCCCTCTAGACTGGTCTCATaGTCAGAATCTTCGTCGTTGGCCATAAGGGCCACA +
Preference number: 6 (lower is better)
Translates to: MSGEMLPSRLVS*SESSSLAIRAT
Trigger: TGTGGCCCTTATGGCCAACGACGAAGATTCTGACAATGAGACCAGTCTAGAGGGCAGCATCTCCCCCGACAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS CAA 90 bp TCCAATACCATGTCGGGGGAGATGCTGCCCTCTAGACTGGTCTCATaGTCAGAATCTTCGTCGTTGGCCATAAGGGCCACACACTTCTCC +
Preference number: 6 (lower is better)
Translates to: SNTMSGEMLPSRLVS*SESSSLAIRATHFS
Trigger: GGAGAAGTGTGTGGCCCTTATGGCCAACGACGAAGATTCTGACAATGAGACCAGTCTAGAGGGCAGCATCTCCCCCGACATGGTATTGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS GCA 72 bp CAAGAGAGCGCTCCAATACCATGTCGGGGGAGATGCTaGCCTCTAGACTGGTCTCATTGTCAGAATCTTCGT +
Preference number: 6 (lower is better)
Translates to: QESAPIPCRGRC*PLDWSHCQNLR
Trigger: ACGAAGATTCTGACAATGAGACCAGTCTAGAGGGCAGCATCTCCCCCGACATGGTATTGGAGCGCTCTCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8
CDS GCA 72 bp AGTCAAGAGAGCGCTCCAATACCATGTCGGGGGAGATaGTGCCCTCTAGACTGGTCTCATTGTCAGAATCTT +
Preference number: 6 (lower is better)
Translates to: SQESAPIPCRGR*CPLDWSHCQNL
Trigger: AAGATTCTGACAATGAGACCAGTCTAGAGGGCAGCATCTCCCCCGACATGGTATTGGAGCGCTCTCTTGACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055754.8
ENSMUST00000105650.8
ENSMUST00000105651.8