RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GPR143 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025333

Ensembl transcript IDs: ENSMUST00000026383.4

Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AAGGACATATTCAGTGAACTCCACTATGGTGACCAGAGTGGAATTTaGAAGATCATACATACATTGTGGCAGCAAGAACACAATCCAAAA +
Preference number: 1 (lower is better)
Translates to: KDIFSELHYGDQSGI*KIIHTLWQQEHNPK
Trigger: TTTTGGATTGTGTTCTTGCTGCCACAATGTATGTATGATCTTTCAAATTCCACTCTGGTCACCATAGTGGAGTTCACTGAATATGTCCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
3UTR-3UTR TCA 90 bp AGAGGTGATACTGACTGTTCTAGAGGGAACTTTCCATCTTCAAGTTCTGATGTGACAAGACACAGAACCTaGAAAATAGGGGTGTCTGAC +
Preference number: 2 (lower is better)
Translates to: RGDTDCSRGNFPSSSSDVTRHRT*KIGVSD
Trigger: GTCAGACACCCCTATTTTTCAGGTTCTGTGTCTTGT...CACATCAGAACTTGAAGATGGAAAGTTCCCTCTAGAACAGTCAGTATCACCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR GCA 90 bp ACTGACTGTTCTAGAGGGAACTTTCCATCTTCAAGTTCTGATGTGTTGTTTCTCGCACCAGGCGGAGAGTaGCGCTTCCCAGGCACAGGG +
Preference number: 4 (lower is better)
Translates to: TDCSRGNFPSSSSDVLFLAPGGE*RFPGTG
Trigger: CCCTGTGCCTGGGAAGCGGCACTCTCCGCCTGGTGC...GAGAAACAACACATCAGAACTTGAAGATGGAAAGTTCCCTCTAGAACAGTCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR TCA 90 bp GAGGGAACTTTCCATCTTCAAGTTCTGATGTGTTGTTTCTCCCAGTATAAAGGACGCCCTGATAGGAGCTaGAGGAGGCCAAGCACCAGG +
Preference number: 4 (lower is better)
Translates to: EGTFHLQVLMCCFSQYKGRPDRS*RRPSTR
Trigger: CCTGGTGCTTGGCCTCCTTCAGCTCCTATCAGGGCG...TCCTTTATACTGGGAGAAACAACACATCAGAACTTGAAGATGGAAAGTTCCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR GCA 90 bp TACATACATTGTGGCAGCAAGAACACAATCCAAAACAACAAGACACAGAACCTGCAGGGGTCTGGTACGTaGCCTCAGCAGCAGAGGCAG +
Preference number: 4 (lower is better)
Translates to: YIHCGSKNTIQNNKTQNLQGSGT*PQQQRQ
Trigger: CTGCCTCTGCTGCTGAGGGCACGTACCAGACCCCTG...CAGGTTCTGTGTCTTGTTGTTTTGGATTGTGTTCTTGCTGCCACAATGTATGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CCA 90 bp TACATACATTGTGGCAGCAAGAACACAATCCAAAACAACAAGACACAGAACCTGCCCAGGCACAGGGCATaGAACACCCGCGGTTGGAAG +
Preference number: 4 (lower is better)
Translates to: YIHCGSKNTIQNNKTQNLPRHRA*NTRGWK
Trigger: CTTCCAACCGCGGGTGTTCCATGCCCTGTGCCTGGG...CAGGTTCTGTGTCTTGTTGTTTTGGATTGTGTTCTTGCTGCCACAATGTATGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CCA 90 bp GAAAAAGTCCAAGGGGTAATTAAGAGTCAAGAGGTGATACTGACTGTTCTAGAGGCAGCACGGAGGATGTaGACTGAGGCGGCTGGGGAT +
Preference number: 4 (lower is better)
Translates to: EKVQGVIKSQEVILTVLEAARRM*TEAAGD
Trigger: ATCCCCAGCCGCCTCAGTCCACATCCTCCGTGCTGC...CTCTAGAACAGTCAGTATCACCTCTTGACTCTTAATTACCCCTTGGACTTTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CCA 90 bp ACTGACTGTTCTAGAGGGAACTTTCCATCTTCAAGTTCTGATGTGTTGTTTCTCGGCCCCTCTCACACCTaGACACAGAAGGGTAGTAGA +
Preference number: 4 (lower is better)
Translates to: TDCSRGNFPSSSSDVLFLGPSHT*TQKGSR
Trigger: TCTACTACCCTTCTGTGTCCAGGTGTGAGAGGGGCC...GAGAAACAACACATCAGAACTTGAAGATGGAAAGTTCCCTCTAGAACAGTCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CCA 90 bp GTGGAATTTGAAAGATCATACATACATTGTGGCAGCAAGAACACAATCCAAAACGCAAGTCACAGGCAGTaGCAGCACGGAGGATGTGGA +
Preference number: 4 (lower is better)
Translates to: VEFERSYIHCGSKNTIQNASHRQ*QHGGCG
Trigger: TCCACATCCTCCGTGCTGCCACTGCCTGTGACTTGC...GTTTTGGATTGTGTTCTTGCTGCCACAATGTATGTATGATCTTTCAAATTCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CCA 90 bp ACCAGAGTGGAATTTGAAAGATCATACATACATTGTGGCAGCAAGAACACAATCGCACTGTACAACAGCTaGATCCACATTGCGCTCCCC +
Preference number: 4 (lower is better)
Translates to: TRVEFERSYIHCGSKNTIALYNS*IHIALP
Trigger: GGGGAGCGCAATGTGGATCCAGCTGTTGTACAGTGC...GATTGTGTTCTTGCTGCCACAATGTATGTATGATCTTTCAAATTCCACTCTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR TCA 90 bp AGGACATATTCAGTGAACTCCACTATGGTGACCAGAGTGGAATTTGAAAGATCAGTGGCAAGTATGTGGTaGCATAATGGGGGATGGCAT +
Preference number: 4 (lower is better)
Translates to: RTYSVNSTMVTRVEFERSVASMW*HNGGWH
Trigger: ATGCCATCCCCCATTATGTCACCACATACTTGCCAC...TGATCTTTCAAATTCCACTCTGGTCACCATAGTGGAGTTCACTGAATATGTCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR TCA 90 bp GAAAAAGTCCAAGGGGTAATTAAGAGTCAAGAGGTGATACTGACTGTTCTAGAGGAAGTCACTGTCTTGTaGAACAGGATTGGGTTGGCC +
Preference number: 4 (lower is better)
Translates to: EKVQGVIKSQEVILTVLEEVTVL*NRIGLA
Trigger: GGCCAACCCAATCCTGTTTCACAAGACAGTGACTTC...CTCTAGAACAGTCAGTATCACCTCTTGACTCTTAATTACCCCTTGGACTTTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR GCA 90 bp GGAACTTTCCATCTTCAAGTTCTGATGTGTTGTTTCTCCCAGTATAAAGGACATGTAGTAGAGCATGACTaGTCCCTCCACACAGAGCAG +
Preference number: 4 (lower is better)
Translates to: GTFHLQVLMCCFSQYKGHVVEHD*SLHTEQ
Trigger: CTGCTCTGTGTGGAGGGAGCAGTCATGCTCTACTAC...ATGTCCTTTATACTGGGAGAAACAACACATCAGAACTTGAAGATGGAAAGTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR GCA 90 bp ACCAGAGTGGAATTTGAAAGATCATACATACATTGTGGCAGCAAGAACACAATCGATGGACATCCAGGCTaGATCCTGTCCAGCCATAGA +
Preference number: 4 (lower is better)
Translates to: TRVEFERSYIHCGSKNTIDGHPG*ILSSHR
Trigger: TCTATGGCTGGACAGGATGCAGCCTGGATGTCCATC...GATTGTGTTCTTGCTGCCACAATGTATGTATGATCTTTCAAATTCCACTCTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CCA 90 bp GTGATACTGACTGTTCTAGAGGGAACTTTCCATCTTCAAGTTCTGATGTGTTGTGTCCTAGCTGCATTCTaGATGCGTTTCAGAGAGCCT +
Preference number: 4 (lower is better)
Translates to: VILTVLEGTFHLQVLMCCVLAAF*MRFREP
Trigger: AGGCTCTCTGAAACGCATCCAGAATGCAGCTAGGAC...ACAACACATCAGAACTTGAAGATGGAAAGTTCCCTCTAGAACAGTCAGTATCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CCA 90 bp GTAATTAAGAGTCAAGAGGTGATACTGACTGTTCTAGAGGGAACTTTCCATCTTAGTTCCCCCTGGGCTTaGGAAATGGAGTCAACTTCC +
Preference number: 4 (lower is better)
Translates to: VIKSQEVILTVLEGTFHLSSPWA*EMESTS
Trigger: GGAAGTTGACTCCATTTCCCAAGCCCAGGGGGAACT...AAGATGGAAAGTTCCCTCTAGAACAGTCAGTATCACCTCTTGACTCTTAATTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR TCA 90 bp ACCAGAGTGGAATTTGAAAGATCATACATACATTGTGGCAGCAAGAACACAATCGTCCCGCCGATCTCCTaGTCACCAAGTATACATCAA +
Preference number: 4 (lower is better)
Translates to: TRVEFERSYIHCGSKNTIVPPIS*SPSIHQ
Trigger: TTGATGTATACTTGGTGATCAGGAGATCGGCGGGAC...GATTGTGTTCTTGCTGCCACAATGTATGTATGATCTTTCAAATTCCACTCTGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CCA 90 bp GTGATACTGACTGTTCTAGAGGGAACTTTCCATCTTCAAGTTCTGATGTGTTGTGACAAGAGAAGTCCTTaGGCTGGATTCAGTATTCCC +
Preference number: 4 (lower is better)
Translates to: VILTVLEGTFHLQVLMCCDKRSP*AGFSIP
Trigger: GGGAATACTGAATCCAGCCCAAGGACTTCTCTTGTC...ACAACACATCAGAACTTGAAGATGGAAAGTTCCCTCTAGAACAGTCAGTATCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR GCA 90 bp GAGGGAACTTTCCATCTTCAAGTTCTGATGTGTTGTTTCTCCCAGTATAAAGGAGTTGCAGGACCCAGTTaGAGTATGGATTTCAACAGT +
Preference number: 4 (lower is better)
Translates to: EGTFHLQVLMCCFSQYKGVAGPS*SMDFNS
Trigger: ACTGTTGAAATCCATACTGCAACTGGGTCCTGCAAC...TCCTTTATACTGGGAGAAACAACACATCAGAACTTGAAGATGGAAAGTTCCCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CCA 90 bp GAGGGAACTTTCCATCTTCAAGTTCTGATGTGTTGTTTCTCCCAGTATAAAGGACCTGGGCTTGGGAAATaGAGTCAACTTCCTTTATGT +
Preference number: 4 (lower is better)
Translates to: EGTFHLQVLMCCFSQYKGPGLGK*SQLPLC
Trigger: ACATAAAGGAAGTTGACTCCATTTCCCAAGCCCAGG...TCCTTTATACTGGGAGAAACAACACATCAGAACTTGAAGATGGAAAGTTCCCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR TCA 90 bp GAGGGAACTTTCCATCTTCAAGTTCTGATGTGTTGTTTCTCCCAGTATAAAGGATGGAAATGTTTTCAATaGACTCTGGGTAGGCTATCC +
Preference number: 4 (lower is better)
Translates to: EGTFHLQVLMCCFSQYKGWKCFQ*TLGRLS
Trigger: GGATAGCCTACCCAGAGTTCATTGAAAACATTTCCA...TCCTTTATACTGGGAGAAACAACACATCAGAACTTGAAGATGGAAAGTTCCCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR TCA 90 bp GTGGAATTTGAAAGATCATACATACATTGTGGCAGCAAGAACACAATCCAAAACGTCATTGTTTCCCACTaGATCACCATCTTGGGAGGA +
Preference number: 4 (lower is better)
Translates to: VEFERSYIHCGSKNTIQNVIVSH*ITILGG
Trigger: TCCTCCCAAGATGGTGATTCAGTGGGAAACAATGAC...GTTTTGGATTGTGTTCTTGCTGCCACAATGTATGTATGATCTTTCAAATTCCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CCA 90 bp GTGATACTGACTGTTCTAGAGGGAACTTTCCATCTTCAAGTTCTGATGTGTTGTGAGAAGTCCTTGGGCTaGATTCAGTATTCCCATTAT +
Preference number: 4 (lower is better)
Translates to: VILTVLEGTFHLQVLMCCEKSLG*IQYSHY
Trigger: ATAATGGGAATACTGAATCCAGCCCAAGGACTTCTC...ACAACACATCAGAACTTGAAGATGGAAAGTTCCCTCTAGAACAGTCAGTATCAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CCA 90 bp AGAGGTGATACTGACTGTTCTAGAGGGAACTTTCCATCTTCAAGTTCTGATGTGGGATTTCAACAGTACTaGCATCTGAATCTTCAGACA +
Preference number: 4 (lower is better)
Translates to: RGDTDCSRGNFPSSSSDVGFQQY*HLNLQT
Trigger: TGTCTGAAGATTCAGATGCCAGTACTGTTGAAATCC...CACATCAGAACTTGAAGATGGAAAGTTCCCTCTAGAACAGTCAGTATCACCTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CCA 90 bp GTAATTAAGAGTCAAGAGGTGATACTGACTGTTCTAGAGGGAACTTTCCATCTTGACCCAGTTGCAGTATaGATTTCAACAGTACTGGCA +
Preference number: 4 (lower is better)
Translates to: VIKSQEVILTVLEGTFHLDPVAV*ISTVLA
Trigger: TGCCAGTACTGTTGAAATCCATACTGCAACTGGGTC...AAGATGGAAAGTTCCCTCTAGAACAGTCAGTATCACCTCTTGACTCTTAATTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR GCA 90 bp ACTGACTGTTCTAGAGGGAACTTTCCATCTTCAAGTTCTGATGTGTTGTTTCTCAATCTTCAGACAAAATaGTCAGCACCTCATCAGAAG +
Preference number: 4 (lower is better)
Translates to: TDCSRGNFPSSSSDVLFLNLQTK*SAPHQK
Trigger: CTTCTGATGAGGTGCTGAGCATTTTGTCTGAAGATT...GAGAAACAACACATCAGAACTTGAAGATGGAAAGTTCCCTCTAGAACAGTCAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR TCA 90 bp GTAATTAAGAGTCAAGAGGTGATACTGACTGTTCTAGAGGGAACTTTCCATCTTAACAGTACTGGCATCTaGATCTTCAGACAAAATGCT +
Preference number: 4 (lower is better)
Translates to: VIKSQEVILTVLEGTFHLNSTGI*IFRQNA
Trigger: AGCATTTTGTCTGAAGATTCAGATGCCAGTACTGTT...AAGATGGAAAGTTCCCTCTAGAACAGTCAGTATCACCTCTTGACTCTTAATTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR GCA 90 bp GAATTTGAAAGATCATACATACATTGTGGCAGCAAGAACACAATCCAAAACAACCAAGTATACATCAACTaGATAGCAAAAGAGCCACCA +
Preference number: 4 (lower is better)
Translates to: EFERSYIHCGSKNTIQNNQVYIN*IAKEPP
Trigger: TGGTGGCTCTTTTGCTATGCAGTTGATGTATACTTG...GTTGTTTTGGATTGTGTTCTTGCTGCCACAATGTATGTATGATCTTTCAAATTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CCA 90 bp CGGAGAGTGCCGCTTCCCAGGCACAGGGCATGGAACACCCGCGGTTaGAAGCTTAGCACCAGCTGTGTGGCTGCGTCCCACGTAGGGCAG +
Preference number: 5 (lower is better)
Translates to: RRVPLPRHRAWNTRG*KLSTSCVAASHVGQ
Trigger: CTGCCCTACGTGGGACGCAGCCACACAGCTGGTGCTAAGCTTCCAACCGCGGGTGTTCCATGCCCTGTGCCTGGGAAGCGGCACTCTCCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS GCA 90 bp GGTGCTCCGTCCCGCCGATCTCCTGATCACCAAGTATACATCAACTaGATAGCAAAAGAGCCACCAGAAGCAGGCACTGTACAACAGCTG +
Preference number: 5 (lower is better)
Translates to: GAPSRRSPDHQVYIN*IAKEPPEAGTVQQL
Trigger: CAGCTGTTGTACAGTGCCTGCTTCTGGTGGCTCTTTTGCTATGCAGTTGATGTATACTTGGTGATCAGGAGATCGGCGGGACGGAGCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS GCA 90 bp AGAGTTCCCCCTGGGCTTGGGAAATGGAGTCAACTTCCTTTATGTTaGAGGACCCAGTTGCAGTATGGATTTCAACAGTACTGGCATCTG +
Preference number: 5 (lower is better)
Translates to: RVPPGLGKWSQLPLC*RTQLQYGFQQYWHL
Trigger: CAGATGCCAGTACTGTTGAAATCCATACTGCAACTGGGTCCTGCAACATAAAGGAAGTTGACTCCATTTCCCAAGCCCAGGGGGAACTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CAA 90 bp AGAGGTGATACTGACTGTTCTAGAGGGAACTTTCCATCTTCAAGTTCTGATGTGGAGTTCCCCCTGGGCTaGGGAAATGGAGTCAACTTC +
Preference number: 5 (lower is better)
Translates to: RGDTDCSRGNFPSSSSDVEFPLG*GNGVNF
Trigger: GAAGTTGACTCCATTTCCCAAGCCCAGGGGGAACTC...CACATCAGAACTTGAAGATGGAAAGTTCCCTCTAGAACAGTCAGTATCACCTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS GCA 90 bp TTGGGCTGGATTCAGTATTCCCATTATAAACCATGTGGTCCTAGCTaGATTCTGGATGCGTTTCAGAGAGCCTCCATGGATATCTGGTTG +
Preference number: 5 (lower is better)
Translates to: LGWIQYSHYKPCGPS*ILDAFQRASMDIWL
Trigger: CAACCAGATATCCATGGAGGCTCTCTGAAACGCATCCAGAATGCAGCTAGGACCACATGGTTTATAATGGGAATACTGAATCCAGCCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CAA 90 bp GAGGGAACTTTCCATCTTCAAGTTCTGATGTGTTGTTTCTCCCAGTATAAAGGAAACCTTCCTGGGGTTTaGATGGGGCACACAGGAACG +
Preference number: 5 (lower is better)
Translates to: EGTFHLQVLMCCFSQYKGNLPGV*MGHTGT
Trigger: CGTTCCTGTGTGCCCCATCAAAACCCCAGGAAGGTT...TCCTTTATACTGGGAGAAACAACACATCAGAACTTGAAGATGGAAAGTTCCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS TCA 90 bp GTTGCAGGACCCAGTTGCAGTATGGATTTCAACAGTACTGGCATCTaGATCTTCAGACAAAATGCTCAGCACCTCATCAGAAGTATGTCC +
Preference number: 5 (lower is better)
Translates to: VAGPSCSMDFNSTGI*IFRQNAQHLIRSMS
Trigger: GGACATACTTCTGATGAGGTGCTGAGCATTTTGTCTGAAGATTCAGATGCCAGTACTGTTGAAATCCATACTGCAACTGGGTCCTGCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS GCA 90 bp CCACATTGCGCTCCCCACACAGAAAGTAGCAGGCCAAATGTCTGTTaGATTCACATTGGAAATGTTTTCAATGAACTCTGGGTAGGCTAT +
Preference number: 5 (lower is better)
Translates to: PHCAPHTESSRPNVC*IHIGNVFNELWVGY
Trigger: ATAGCCTACCCAGAGTTCATTGAAAACATTTCCAATGTGAATGCAACAGACATTTGGCCTGCTACTTTCTGTGTGGGGAGCGCAATGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CAA 90 bp AGAGGTGATACTGACTGTTCTAGAGGGAACTTTCCATCTTCAAGTTCTGATGTGCAGCAGAGGCAGTCATaGTTTCCCACTGAATCACCA +
Preference number: 5 (lower is better)
Translates to: RGDTDCSRGNFPSSSSDVQQRQS*FPTESP
Trigger: TGGTGATTCAGTGGGAAACAATGACTGCCTCTGCTG...CACATCAGAACTTGAAGATGGAAAGTTCCCTCTAGAACAGTCAGTATCACCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS GCA 90 bp CAGTATGGATTTCAACAGTACTGGCATCTGAATCTTCAGACAAAATaGTCAGCACCTCATCAGAAGTATGTCCCCCGACACATACAACCT +
Preference number: 5 (lower is better)
Translates to: QYGFQQYWHLNLQTK*SAPHQKYVPRHIQP
Trigger: AGGTTGTATGTGTCGGGGGACATACTTCTGATGAGGTGCTGAGCATTTTGTCTGAAGATTCAGATGCCAGTACTGTTGAAATCCATACTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CCA 90 bp CCAAATGTCTGTTGCATTCACATTGGAAATGTTTTCAATGAACTCTaGGTAGGCTATCCACACTGTGGACCTGATAACGATTCCCAGGCA +
Preference number: 5 (lower is better)
Translates to: PNVCCIHIGNVFNEL*VGYPHCGPDNDSQA
Trigger: TGCCTGGGAATCGTTATCAGGTCCACAGTGTGGATAGCCTACCCAGAGTTCATTGAAAACATTTCCAATGTGAATGCAACAGACATTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CCA 90 bp GGATTCAGTATTCCCATTATAAACCATGTGGTCCTAGCTGCATTCTaGATGCGTTTCAGAGAGCCTCCATGGATATCTGGTTGCATTTCA +
Preference number: 5 (lower is better)
Translates to: GFSIPIINHVVLAAF*MRFREPPWISGCIS
Trigger: TGAAATGCAACCAGATATCCATGGAGGCTCTCTGAAACGCATCCAGAATGCAGCTAGGACCACATGGTTTATAATGGGAATACTGAATCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CCA 90 bp CCTTTATGTTGCAGGACCCAGTTGCAGTATGGATTTCAACAGTACTaGCATCTGAATCTTCAGACAAAATGCTCAGCACCTCATCAGAAG +
Preference number: 5 (lower is better)
Translates to: PLCCRTQLQYGFQQY*HLNLQTKCSAPHQK
Trigger: CTTCTGATGAGGTGCTGAGCATTTTGTCTGAAGATTCAGATGCCAGTACTGTTGAAATCCATACTGCAACTGGGTCCTGCAACATAAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CAA 90 bp GTGGAATTTGAAAGATCATACATACATTGTGGCAGCAAGAACACAATCCAAAACACAGCTGGATCCACATaGCGCTCCCCACACAGAAAG +
Preference number: 5 (lower is better)
Translates to: VEFERSYIHCGSKNTIQNTAGST*RSPHRK
Trigger: CTTTCTGTGTGGGGAGCGCAATGTGGATCCAGCTGT...GTTTTGGATTGTGTTCTTGCTGCCACAATGTATGTATGATCTTTCAAATTCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CAA 90 bp GAGGGAACTTTCCATCTTCAAGTTCTGATGTGTTGTTTCTCCCAGTATAAAGGATCTTGTGAAACAGGATaGGGTTGGCCACCAGGACAA +
Preference number: 5 (lower is better)
Translates to: EGTFHLQVLMCCFSQYKGSCETG*GWPPGQ
Trigger: TTGTCCTGGTGGCCAACCCAATCCTGTTTCACAAGA...TCCTTTATACTGGGAGAAACAACACATCAGAACTTGAAGATGGAAAGTTCCCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CAA 90 bp GAGGGAACTTTCCATCTTCAAGTTCTGATGTGTTGTTTCTCCCAGTATAAAGGAAGACAAGAGAAGTCCTaGGGCTGGATTCAGTATTCC +
Preference number: 5 (lower is better)
Translates to: EGTFHLQVLMCCFSQYKGRQEKS*GWIQYS
Trigger: GGAATACTGAATCCAGCCCAAGGACTTCTCTTGTCT...TCCTTTATACTGGGAGAAACAACACATCAGAACTTGAAGATGGAAAGTTCCCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CCA 90 bp GAAATGGAGTCAACTTCCTTTATGTTGCAGGACCCAGTTGCAGTATaGATTTCAACAGTACTGGCATCTGAATCTTCAGACAAAATGCTC +
Preference number: 5 (lower is better)
Translates to: EMESTSFMLQDPVAV*ISTVLASESSDKML
Trigger: GAGCATTTTGTCTGAAGATTCAGATGCCAGTACTGTTGAAATCCATACTGCAACTGGGTCCTGCAACATAAAGGAAGTTGACTCCATTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CAA 90 bp GTGGAATTTGAAAGATCATACATACATTGTGGCAGCAAGAACACAATCCAAAACTGTTGCAGGACCCAGTaGCAGTATGGATTTCAACAG +
Preference number: 5 (lower is better)
Translates to: VEFERSYIHCGSKNTIQNCCRTQ*QYGFQQ
Trigger: CTGTTGAAATCCATACTGCAACTGGGTCCTGCAACA...GTTTTGGATTGTGTTCTTGCTGCCACAATGTATGTATGATCTTTCAAATTCCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CAA 90 bp ACCAGAGTGGAATTTGAAAGATCATACATACATTGTGGCAGCAAGAACACAATCCAGGCCAAATGTCTGTaGCATTCACATTGGAAATGT +
Preference number: 5 (lower is better)
Translates to: TRVEFERSYIHCGSKNTIQAKCL*HSHWKC
Trigger: ACATTTCCAATGTGAATGCAACAGACATTTGGCCTG...GATTGTGTTCTTGCTGCCACAATGTATGTATGATCTTTCAAATTCCACTCTGGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS-3UTR CAA 90 bp GTGATACTGACTGTTCTAGAGGGAACTTTCCATCTTCAAGTTCTGATGTGTTGTTCCATGGATATCTGGTaGCATTTCAAGGTAGAACAA +
Preference number: 5 (lower is better)
Translates to: VILTVLEGTFHLQVLMCCSMDIW*HFKVEQ
Trigger: TTGTTCTACCTTGAAATGCAACCAGATATCCATGGA...ACAACACATCAGAACTTGAAGATGGAAAGTTCCCTCTAGAACAGTCAGTATCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS TCA 72 bp CAAGTCACAGGCAGTGGCAGCACGGAGGATGTGGACTaGGGCGGCTGGGGATGTCGCAGGCGCCCTGTGACC +
Preference number: 6 (lower is better)
Translates to: QVTGSGSTEDVD*GGWGCRRRPVT
Trigger: GGTCACAGGGCGCCTGCGACATCCCCAGCCGCCTCAGTCCACATCCTCCGTGCTGCCACTGCCTGTGACTTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CCA 72 bp CCAAGCAAGTCACAGGCAGTGGCAGCACGGAGGATGTaGACTGAGGCGGCTGGGGATGTCGCAGGCGCCCTG +
Preference number: 6 (lower is better)
Translates to: PSKSQAVAARRM*TEAAGDVAGAL
Trigger: CAGGGCGCCTGCGACATCCCCAGCCGCCTCAGTCCACATCCTCCGTGCTGCCACTGCCTGTGACTTGCTTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS GCA 72 bp ATAGGAGCTGAAGGAGGCCAAGCACCAGGCGGAGAGTaGCGCTTCCCAGGCACAGGGCATGGAACACCCGCG +
Preference number: 6 (lower is better)
Translates to: IGAEGGQAPGGE*RFPGTGHGTPA
Trigger: CGCGGGTGTTCCATGCCCTGTGCCTGGGAAGCGGCACTCTCCGCCTGGTGCTTGGCCTCCTTCAGCTCCTAT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CCA 72 bp CCGCTTCCCAGGCACAGGGCATGGAACACCCGCGGTTaGAAGCTTAGCACCAGCTGTGTGGCTGCGTCCCAC +
Preference number: 6 (lower is better)
Translates to: PLPRHRAWNTRG*KLSTSCVAASH
Trigger: GTGGGACGCAGCCACACAGCTGGTGCTAAGCTTCCAACCGCGGGTGTTCCATGCCCTGTGCCTGGGAAGCGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CCA 72 bp ACCAGGCGGAGAGTGCCGCTTCCCAGGCACAGGGCATaGAACACCCGCGGTTGGAAGCTTAGCACCAGCTGT +
Preference number: 6 (lower is better)
Translates to: TRRRVPLPRHRA*NTRGWKLSTSC
Trigger: ACAGCTGGTGCTAAGCTTCCAACCGCGGGTGTTCCATGCCCTGTGCCTGGGAAGCGGCACTCTCCGCCTGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CCA 72 bp CCACTGAAGTCACTGTCTTGTGAAACAGGATTGGGTTaGCCACCAGGACAAGCAGAAGTGGCAAGTATGTGG +
Preference number: 6 (lower is better)
Translates to: PLKSLSCETGLG*PPGQAEVASMW
Trigger: CCACATACTTGCCACTTCTGCTTGTCCTGGTGGCCAACCCAATCCTGTTTCACAAGACAGTGACTTCAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CAA 72 bp AAGAGGCCACTGAAGTCACTGTCTTGTGAAACAGGATaGGGTTGGCCACCAGGACAAGCAGAAGTGGCAAGT +
Preference number: 6 (lower is better)
Translates to: KRPLKSLSCETG*GWPPGQAEVAS
Trigger: ACTTGCCACTTCTGCTTGTCCTGGTGGCCAACCCAATCCTGTTTCACAAGACAGTGACTTCAGTGGCCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CAA 90 bp GCTGCATCCTGTCCAGCCATAGAAGGCCAGAGACAAGAGAAGTCCTaGGGCTGGATTCAGTATTCCCATTATAAACCATGTGGTCCTAGC +
Preference number: 6 (lower is better)
Translates to: AASCPAIEGQRQEKS*GWIQYSHYKPCGPS
Trigger: GCTAGGACCACATGGTTTATAATGGGAATACTGAATCCAGCCCAAGGACTTCTCTTGTCTCTGGCCTTCTATGGCTGGACAGGATGCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS TCA 72 bp CCTTTCAGTAAAGAGGCCACTGAAGTCACTGTCTTGTaGAACAGGATTGGGTTGGCCACCAGGACAAGCAGA +
Preference number: 6 (lower is better)
Translates to: PFSKEATEVTVL*NRIGLATRTSR
Trigger: TCTGCTTGTCCTGGTGGCCAACCCAATCCTGTTTCACAAGACAGTGACTTCAGTGGCCTCTTTACTGAAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS GCA 72 bp CCTGGGCTTGGGAAATGGAGTCAACTTCCTTTATGTTaGAGGACCCAGTTGCAGTATGGATTTCAACAGTAC +
Preference number: 6 (lower is better)
Translates to: PGLGKWSQLPLC*RTQLQYGFQQY
Trigger: GTACTGTTGAAATCCATACTGCAACTGGGTCCTGCAACATAAAGGAAGTTGACTCCATTTCCCAAGCCCAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CCA 72 bp GCCATAGAAGGCCAGAGACAAGAGAAGTCCTTGGGCTaGATTCAGTATTCCCATTATAAACCATGTGGTCCT +
Preference number: 6 (lower is better)
Translates to: AIEGQRQEKSLG*IQYSHYKPCGP
Trigger: AGGACCACATGGTTTATAATGGGAATACTGAATCCAGCCCAAGGACTTCTCTTGTCTCTGGCCTTCTATGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CAA 72 bp CCCTGGGCTTGGGAAATGGAGTCAACTTCCTTTATGTaGCAGGACCCAGTTGCAGTATGGATTTCAACAGTA +
Preference number: 6 (lower is better)
Translates to: PWAWEMESTSFM*QDPVAVWISTV
Trigger: TACTGTTGAAATCCATACTGCAACTGGGTCCTGCAACATAAAGGAAGTTGACTCCATTTCCCAAGCCCAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CAA 90 bp GGGCTTGGGAAATGGAGTCAACTTCCTTTATGTTGCAGGACCCAGTaGCAGTATGGATTTCAACAGTACTGGCATCTGAATCTTCAGACA +
Preference number: 6 (lower is better)
Translates to: GLGKWSQLPLCCRTQ*QYGFQQYWHLNLQT
Trigger: TGTCTGAAGATTCAGATGCCAGTACTGTTGAAATCCATACTGCAACTGGGTCCTGCAACATAAAGGAAGTTGACTCCATTTCCCAAGCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CCA 72 bp ATTCCCATTATAAACCATGTGGTCCTAGCTGCATTCTaGATGCGTTTCAGAGAGCCTCCATGGATATCTGGT +
Preference number: 6 (lower is better)
Translates to: IPIINHVVLAAF*MRFREPPWISG
Trigger: ACCAGATATCCATGGAGGCTCTCTGAAACGCATCCAGAATGCAGCTAGGACCACATGGTTTATAATGGGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CAA 72 bp TGTCCAGCCATAGAAGGCCAGAGACAAGAGAAGTCCTaGGGCTGGATTCAGTATTCCCATTATAAACCATGT +
Preference number: 6 (lower is better)
Translates to: CPAIEGQRQEKS*GWIQYSHYKPC
Trigger: ACATGGTTTATAATGGGAATACTGAATCCAGCCCAAGGACTTCTCTTGTCTCTGGCCTTCTATGGCTGGACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS GCA 72 bp ATTCAGTATTCCCATTATAAACCATGTGGTCCTAGCTaGATTCTGGATGCGTTTCAGAGAGCCTCCATGGAT +
Preference number: 6 (lower is better)
Translates to: IQYSHYKPCGPS*ILDAFQRASMD
Trigger: ATCCATGGAGGCTCTCTGAAACGCATCCAGAATGCAGCTAGGACCACATGGTTTATAATGGGAATACTGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CCA 72 bp TGTTGCATTCACATTGGAAATGTTTTCAATGAACTCTaGGTAGGCTATCCACACTGTGGACCTGATAACGAT +
Preference number: 6 (lower is better)
Translates to: CCIHIGNVFNEL*VGYPHCGPDND
Trigger: ATCGTTATCAGGTCCACAGTGTGGATAGCCTACCCAGAGTTCATTGAAAACATTTCCAATGTGAATGCAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CAA 72 bp CTGGATGCGTTTCAGAGAGCCTCCATGGATATCTGGTaGCATTTCAAGGTAGAACAAAAGACTTTCATTGAT +
Preference number: 6 (lower is better)
Translates to: LDAFQRASMDIW*HFKVEQKTFID
Trigger: ATCAATGAAAGTCTTTTGTTCTACCTTGAAATGCAACCAGATATCCATGGAGGCTCTCTGAAACGCATCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4
CDS CAA 72 bp AAATGGAGTCAACTTCCTTTATGTTGCAGGACCCAGTaGCAGTATGGATTTCAACAGTACTGGCATCTGAAT +
Preference number: 6 (lower is better)
Translates to: KWSQLPLCCRTQ*QYGFQQYWHLN
Trigger: ATTCAGATGCCAGTACTGTTGAAATCCATACTGCAACTGGGTCCTGCAACATAAAGGAAGTTGACTCCATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026383.4