Pregenerated sensors for GPHB5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048982Ensembl transcript IDs: ENSMUST00000051079.4
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACAGTCCTATGCACCAGAGAGATTATTCTGGGGAAGGGCCACTATTaGTTTACATCTTCAGTGTTAAGTGTGCGGCACCTGAACCTTGTG | + |
|
Preference number: 1 (lower is better) Translates to: TVLCTREIILGKGHY*FTSSVLSVRHLNLV Trigger: CACAAGGTTCAGGTGCCGCACACTTAACACTGAAGATGTAAAGCAATAGTGGCCCTTCCCCAGAATAATCTCTCTGGTGCATAGGACTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR CCA 90 bp | TGGGAGATGAATCAGCCACACCAAAACCACCTTTTCCTAACAGTCTaGGCCGTCCTTGCCTCTTGTTTAGGTAATCACTTGGTTCAAAGG | + |
|
Preference number: 1 (lower is better) Translates to: WEMNQPHQNHLFLTV*AVLASCLGNHLVQR Trigger: CCTTTGAACCAAGTGATTACCTAAACAAGAGGCAAGGACGGCCCAGACTGTTAGGAAAAGGTGGTTTTGGTGTGGCTGATTCATCTCCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR-3UTR CCA 90 bp | AGAGAAAGCAACCCAGTGGCAGGCGAGCACACCTCCCCCTCTGGGCAGGCAGGGACCTCACTGTGGCTGTaGGGGAACACTCAAATGGGA | + |
|
Preference number: 2 (lower is better) Translates to: RESNPVAGEHTSPSGQAGTSLWL*GNTQMG Trigger: TCCCATTTGAGTGTTCCCCCACAGCCACAGTGAGGT...CCCTGCCTGCCCAGAGGGGGAGGTGTGCTCGCCTGCCACTGGGTTGCTTTCTCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR-3UTR CCA 90 bp | TCAGCCACACCAAAACCACCTTTTCCTAACAGTCTGGGCCGTCCTTGCCTCTTGTATTCCTGGAGCCAGTaGATGTGTGAGGTTTGGGTC | + |
|
Preference number: 2 (lower is better) Translates to: SATPKPPFPNSLGRPCLLYSWSQ*MCEVWV Trigger: GACCCAAACCTCACACATCCACTGGCTCCAGGAATA...CAAGAGGCAAGGACGGCCCAGACTGTTAGGAAAAGGTGGTTTTGGTGTGGCTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR CAA 90 bp | CCGCGGATGGGCATCCTTGTGAGCCAGGAAGAAAGCGCTTTGGTTTaGATCATCCTTTGCCCTTTAATCATAAATCCAGTCCAAGCTCAA | + |
|
Preference number: 2 (lower is better) Translates to: PRMGILVSQEESALV*IILCPLIINPVQAQ Trigger: TTGAGCTTGGACTGGATTTATGATTAAAGGGCAAAGGATGATCAAAACCAAAGCGCTTTCTTCCTGGCTCACAAGGATGCCCATCCGCGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR CAA 90 bp | GAACACCCGCGGATGGGCATCCTTGTGAGCCAGGAAGAAAGCGCTTaGGTTTTGATCATCCTTTGCCCTTTAATCATAAATCCAGTCCAA | + |
|
Preference number: 2 (lower is better) Translates to: EHPRMGILVSQEESA*VLIILCPLIINPVQ Trigger: TTGGACTGGATTTATGATTAAAGGGCAAAGGATGATCAAAACCAAAGCGCTTTCTTCCTGGCTCACAAGGATGCCCATCCGCGGGTGTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR-3UTR CCA 90 bp | GAGATGAATCAGCCACACCAAAACCACCTTTTCCTAACAGTCTGGGCCGTCCTTCTCAATGGCAGGATGTaGGGATTTAAAGGCTTTCCA | + |
|
Preference number: 2 (lower is better) Translates to: EMNQPHQNHLFLTVWAVLLNGRM*GFKGFP Trigger: TGGAAAGCCTTTAAATCCCCACATCCTGCCATTGAG...AAGGACGGCCCAGACTGTTAGGAAAAGGTGGTTTTGGTGTGGCTGATTCATCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR CAA 90 bp | TACAGTCCTATGCACCAGAGAGATTATTCTGGGGAAGGGCCACTATaGCTTTACATCTTCAGTGTTAAGTGTGCGGCACCTGAACCTTGT | + |
|
Preference number: 2 (lower is better) Translates to: YSPMHQRDYSGEGPL*LYIFSVKCAAPEPC Trigger: ACAAGGTTCAGGTGCCGCACACTTAACACTGAAGATGTAAAGCAATAGTGGCCCTTCCCCAGAATAATCTCTCTGGTGCATAGGACTGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR-3UTR CCA 90 bp | CATCCTTGTGAGCCAGGAAGAAAGCGCTTTGGTTTTGATCATCCTTTGCCCTTTAGTAGCAACAGAACCTaGGAGAGGGTTGCAATATAC | + |
|
Preference number: 2 (lower is better) Translates to: HPCEPGRKRFGFDHPLPFSSNRT*ERVAIY Trigger: GTATATTGCAACCCTCTCCCAGGTTCTGTTGCTACT...AAAGGGCAAAGGATGATCAAAACCAAAGCGCTTTCTTCCTGGCTCACAAGGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR CAA 90 bp | CATCCTTGTGAGCCAGGAAGAAAGCGCTTTGGTTTTGATCATCCTTaGCCCTTTAATCATAAATCCAGTCCAAGCTCAATGGCAGGATGT | + |
|
Preference number: 2 (lower is better) Translates to: HPCEPGRKRFGFDHP*PFNHKSSPSSMAGC Trigger: ACATCCTGCCATTGAGCTTGGACTGGATTTATGATTAAAGGGCAAAGGATGATCAAAACCAAAGCGCTTTCTTCCTGGCTCACAAGGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR CAA 90 bp | TGTTGTTGTTGCTGTAATTGGCAAGCAGACACTTCCATAAGGGACTaGAGGGAACTTAGAGAATTTTGCTTGGGAGATGAATCAGCCACA | + |
|
Preference number: 2 (lower is better) Translates to: CCCCCNWQADTSIRD*RELREFCLGDESAT Trigger: TGTGGCTGATTCATCTCCCAAGCAAAATTCTCTAAGTTCCCTCAAGTCCCTTATGGAAGTGTCTGCTTGCCAATTACAGCAACAACAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR-3UTR CCA 90 bp | TCAAATAAAGGCACAGTAGCAACAGAACCTGGGAGAGGGTTGCAATATACAATTAAGCAGATATATTCCTaGAGCCAGTGGATGTGTGAG | + |
|
Preference number: 2 (lower is better) Translates to: SNKGTVATEPGRGLQYTIKQIYS*SQWMCE Trigger: CTCACACATCCACTGGCTCCAGGAATATATCTGCTT...AATTGTATATTGCAACCCTCTCCCAGGTTCTGTTGCTACTGTGCCTTTATTTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR CCA 72 bp | ATCAGCTGCTGTAAGACTTCAGAGAAAGCAACCCAGTaGCAGGCGAGCACACCTCCCCCTCTGGGCAGGCAG | + |
|
Preference number: 3 (lower is better) Translates to: ISCCKTSEKATQ*QASTPPPLGRQ Trigger: CTGCCTGCCCAGAGGGGGAGGTGTGCTCGCCTGCCACTGGGTTGCTTTCTCTGAAGTCTTACAGCAGCTGAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR-3UTR CAA 90 bp | GTGGCAGGCGAGCACACCTCCCCCTCTGGGCAGGCAGGGCCATCTTACTGCTGTCTTAGAGAATTTTGCTaGGGAGATGAATCAGCCACA | + |
|
Preference number: 3 (lower is better) Translates to: VAGEHTSPSGQAGPSYCCLREFC*GDESAT Trigger: TGTGGCTGATTCATCTCCCAAGCAAAATTCTCTAAG...ACAGCAGTAAGATGGCCCTGCCTGCCCAGAGGGGGAGGTGTGCTCGCCTGCCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR-3UTR CAA 90 bp | GGGCTGCTCTCTGTAAGAACACCCGCGGATGGGCATCCTTGTGAGCCAGGAAGAGAACCTGGGAGAGGGTaGCAATATACAATTCACGTT | + |
|
Preference number: 3 (lower is better) Translates to: GLLSVRTPADGHPCEPGREPGRG*QYTIHV Trigger: AACGTGAATTGTATATTGCAACCCTCTCCCAGGTTC...TCTTCCTGGCTCACAAGGATGCCCATCCGCGGGTGTTCTTACAGAGAGCAGCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR-3UTR CAA 90 bp | GAGATGAATCAGCCACACCAAAACCACCTTTTCCTAACAGTCTGGGCCGTCCTTTTGGGCTGGCCCAGATaGAATGCAGGGGATAAAGCA | + |
|
Preference number: 3 (lower is better) Translates to: EMNQPHQNHLFLTVWAVLLGWPR*NAGDKA Trigger: TGCTTTATCCCCTGCATTCAATCTGGGCCAGCCCAA...AAGGACGGCCCAGACTGTTAGGAAAAGGTGGTTTTGGTGTGGCTGATTCATCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR CCA 72 bp | ATGCAGGGGATAAAGCAGATATATTCCTGGAGCCAGTaGATGTGTGAGGTTTGGGTCACCAGCTGTGACAAC | + |
|
Preference number: 3 (lower is better) Translates to: MQGIKQIYSWSQ*MCEVWVTSCDN Trigger: GTTGTCACAGCTGGTGACCCAAACCTCACACATCCACTGGCTCCAGGAATATATCTGCTTTATCCCCTGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR GCA 72 bp | TGCACCAGAGAGATTATTCTGGGGAAGGGCCACTATTaGTTTACATCTTCAGTGTTAAGTGTGCGGCACCTG | + |
|
Preference number: 3 (lower is better) Translates to: CTREIILGKGHY*FTSSVLSVRHL Trigger: CAGGTGCCGCACACTTAACACTGAAGATGTAAAGCAATAGTGGCCCTTCCCCAGAATAATCTCTCTGGTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR CCA 72 bp | AATCAGCCACACCAAAACCACCTTTTCCTAACAGTCTaGGCCGTCCTTGCCTCTTGTTTAGGTAATCACTTG | + |
|
Preference number: 3 (lower is better) Translates to: NQPHQNHLFLTV*AVLASCLGNHL Trigger: CAAGTGATTACCTAAACAAGAGGCAAGGACGGCCCAGACTGTTAGGAAAAGGTGGTTTTGGTGTGGCTGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR CCA 72 bp | CCGAATCTACAGTCCTATGCACCAGAGAGATTATTCTaGGGAAGGGCCACTATTGCTTTACATCTTCAGTGT | + |
|
Preference number: 3 (lower is better) Translates to: PNLQSYAPERLF*GRATIALHLQC Trigger: ACACTGAAGATGTAAAGCAATAGTGGCCCTTCCCCAGAATAATCTCTCTGGTGCATAGGACTGTAGATTCGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR-3UTR CAA 90 bp | TACAATTCACGTTCCAAAAGTCAAGCAAAGAAAACCGAATCTACAGTCCTATGCAAGAAGGCAGGTAACTaGGGCTGGCCCAGATTGAAT | + |
|
Preference number: 3 (lower is better) Translates to: YNSRSKSQAKKTESTVLCKKAGN*GWPRLN Trigger: ATTCAATCTGGGCCAGCCCAAGTTACCTGCCTTCTT...GCATAGGACTGTAGATTCGGTTTTCTTTGCTTGACTTTTGGAACGTGAATTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR CCA 72 bp | TGTTGTTGTTGTCATTGTTGTTGTTGTTGCTGTAATTaGCAAGCAGACACTTCCATAAGGGACTTGAGGGAA | + |
|
Preference number: 3 (lower is better) Translates to: CCCCHCCCCCCN*QADTSIRDLRE Trigger: TTCCCTCAAGTCCCTTATGGAAGTGTCTGCTTGCCAATTACAGCAACAACAACAACAATGACAACAACAACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR-3UTR CAA 90 bp | GTTGTTGTTGTCATTGTTGTTGTTGTTGCTGTAATTGGCAAGCAGACACTTCCATGTTTAGGTAATCACTaGGTTCAAAGGGAAATGGGC | + |
|
Preference number: 3 (lower is better) Translates to: VVVVIVVVVAVIGKQTLPCLGNH*VQREMG Trigger: GCCCATTTCCCTTTGAACCAAGTGATTACCTAAACA...TGGAAGTGTCTGCTTGCCAATTACAGCAACAACAACAACAATGACAACAACAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR GCA 72 bp | TGTTGTTGTTGTTGTTGTTGTCATTGTTGTTGTTGTTaGTGTAATTGGCAAGCAGACACTTCCATAAGGGAC | + |
|
Preference number: 3 (lower is better) Translates to: CCCCCCCHCCCC*CNWQADTSIRD Trigger: GTCCCTTATGGAAGTGTCTGCTTGCCAATTACAGCAACAACAACAACAATGACAACAACAACAACAACAACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| CDS-3UTR GCA 90 bp | AGAGAAAGCAACCCAGTGGCAGGCGAGCACACCTCCCCCTCTGGGCAGGCAGGGCAGCCCACAAAAGTGTaGAGGTTCCCACTGGAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: RESNPVAGEHTSPSGQAGQPTKV*RFPLEL Trigger: CAGCTCCAGTGGGAACCTGCACACTTTTGTGGGCTG...CCCTGCCTGCCCAGAGGGGGAGGTGTGCTCGCCTGCCACTGGGTTGCTTTCTCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| CDS-3UTR CCA 90 bp | AGAGAAAGCAACCCAGTGGCAGGCGAGCACACCTCCCCCTCTGGGCAGGCAGGGAAGTCCCCTGCAGCCTaGCTTCTTGGCCATGAAAGT | + |
|
Preference number: 4 (lower is better) Translates to: RESNPVAGEHTSPSGQAGKSPAA*LLGHES Trigger: ACTTTCATGGCCAAGAAGCCAGGCTGCAGGGGACTT...CCCTGCCTGCCCAGAGGGGGAGGTGTGCTCGCCTGCCACTGGGTTGCTTTCTCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| CDS-3UTR CCA 90 bp | AAGCAGATATATTCCTGGAGCCAGTGGATGTGTGAGGTTTGGGTCACCAGCTGTAGGGAGGCTCCAGGATaGGTTTCTCCCAGGTCTCGC | + |
|
Preference number: 4 (lower is better) Translates to: KQIYSWSQWMCEVWVTSCREAPG*VSPRSR Trigger: GCGAGACCTGGGAGAAACCCATCCTGGAGCCTCCCT...ACAGCTGGTGACCCAAACCTCACACATCCACTGGCTCCAGGAATATATCTGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| CDS-3UTR TCA 90 bp | CTTGCCTCTTGTTTAGGTAATCACTTGGTTCAAAGGGAAATGGGCTGCTCTCTGTCCCACTGGAGCTGCTaGGGACAGAGTCAGGGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: LASCLGNHLVQREMGCSLSHWSC*GQSQGH Trigger: GTGGCCCTGACTCTGTCCTCAGCAGCTCCAGTGGGA...CAGAGAGCAGCCCATTTCCCTTTGAACCAAGTGATTACCTAAACAAGAGGCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| CDS-3UTR CCA 90 bp | GGCATCCTTGTGAGCCAGGAAGAAAGCGCTTTGGTTTTGATCATCCTTTGCCCTACTCAGTGGTGGCAGTaGAACACGCCCCACAGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: GILVSQEESALVLIILCPTQWWQ*NTPHSH Trigger: GTGACTGTGGGGCGTGTTCCACTGCCACCACTGAGT...AGGGCAAAGGATGATCAAAACCAAAGCGCTTTCTTCCTGGCTCACAAGGATGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| CDS-3UTR CCA 90 bp | TCAAATAAAGGCACAGTAGCAACAGAACCTGGGAGAGGGTTGCAATATACAATTTGGTCTCACACTCAGTaGTGGCAGTGGAACACGCCC | + |
|
Preference number: 4 (lower is better) Translates to: SNKGTVATEPGRGLQYTIWSHTQ*WQWNTP Trigger: GGGCGTGTTCCACTGCCACCACTGAGTGTGAGACCA...AATTGTATATTGCAACCCTCTCCCAGGTTCTGTTGCTACTGTGCCTTTATTTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR CAA 72 bp | ATGCACCAGAGAGATTATTCTGGGGAAGGGCCACTATaGCTTTACATCTTCAGTGTTAAGTGTGCGGCACCT | + |
|
Preference number: 4 (lower is better) Translates to: MHQRDYSGEGPL*LYIFSVKCAAP Trigger: AGGTGCCGCACACTTAACACTGAAGATGTAAAGCAATAGTGGCCCTTCCCCAGAATAATCTCTCTGGTGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| CDS-3UTR GCA 90 bp | ATTCACGTTCCAAAAGTCAAGCAAAGAAAACCGAATCTACAGTCCTATGCACCAGAGAAGGAGGGCCACTaGACCAAGGACAAGGTATAC | + |
|
Preference number: 4 (lower is better) Translates to: IHVPKVKQRKPNLQSYAPEKEGH*TKDKVY Trigger: GTATACCTTGTCCTTGGTGCAGTGGCCCTCCTTCTC...TGGTGCATAGGACTGTAGATTCGGTTTTCTTTGCTTGACTTTTGGAACGTGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| CDS-3UTR CCA 90 bp | CATCCTTGTGAGCCAGGAAGAAAGCGCTTTGGTTTTGATCATCCTTTGCCCTTTTCACTGTCACCTGTCTaGTCTCATTGTATGTACACA | + |
|
Preference number: 4 (lower is better) Translates to: HPCEPGRKRFGFDHPLPFSLSPV*SHCMYT Trigger: TGTGTACATACAATGAGACCAGACAGGTGACAGTGA...AAAGGGCAAAGGATGATCAAAACCAAAGCGCTTTCTTCCTGGCTCACAAGGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR CAA 72 bp | GGCATCCTTGTGAGCCAGGAAGAAAGCGCTTTGGTTTaGATCATCCTTTGCCCTTTAATCATAAATCCAGTC | + |
|
Preference number: 4 (lower is better) Translates to: GILVSQEESALV*IILCPLIINPV Trigger: GACTGGATTTATGATTAAAGGGCAAAGGATGATCAAAACCAAAGCGCTTTCTTCCTGGCTCACAAGGATGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR CAA 72 bp | CGGATGGGCATCCTTGTGAGCCAGGAAGAAAGCGCTTaGGTTTTGATCATCCTTTGCCCTTTAATCATAAAT | + |
|
Preference number: 4 (lower is better) Translates to: RMGILVSQEESA*VLIILCPLIIN Trigger: ATTTATGATTAAAGGGCAAAGGATGATCAAAACCAAAGCGCTTTCTTCCTGGCTCACAAGGATGCCCATCCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| 3UTR CAA 72 bp | AATAAAGGCACAGTAGCAACAGAACCTGGGAGAGGGTaGCAATATACAATTCACGTTCCAAAAGTCAAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: NKGTVATEPGRG*QYTIHVPKVKQ Trigger: TTGCTTGACTTTTGGAACGTGAATTGTATATTGCAACCCTCTCCCAGGTTCTGTTGCTACTGTGCCTTTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| CDS CCA 90 bp | GCGGCCCCAGCAGGCATCTGTGGTGATCCGAAGTCCCCTGCAGCCTaGCTTCTTGGCCATGAAAGTGAATTCCCTCACAGCACAGCCCAC | + |
|
Preference number: 5 (lower is better) Translates to: AAPAGICGDPKSPAA*LLGHESEFPHSTAH Trigger: GTGGGCTGTGCTGTGAGGGAATTCACTTTCATGGCCAAGAAGCCAGGCTGCAGGGGACTTCGGATCACCACAGATGCCTGCTGGGGCCGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| CDS GCA 90 bp | TTGGCCATGAAAGTGAATTCCCTCACAGCACAGCCCACAAAAGTGTaGAGGTTCCCACTGGAGCTGCTGAGGACAGAGTCAGGGCCACCC | + |
|
Preference number: 5 (lower is better) Translates to: LAMKVNSLTAQPTKV*RFPLELLRTESGPP Trigger: GGGTGGCCCTGACTCTGTCCTCAGCAGCTCCAGTGGGAACCTGCACACTTTTGTGGGCTGTGCTGTGAGGGAATTCACTTTCATGGCCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| CDS TCA 72 bp | CCCAGGTCTCGCAGCGGCCCCAGCAGGCATCTGTGGTaGTCCGAAGTCCCCTGCAGCCTGGCTTCTTGGCCA | + |
|
Preference number: 6 (lower is better) Translates to: PRSRSGPSRHLW*SEVPCSLASWP Trigger: TGGCCAAGAAGCCAGGCTGCAGGGGACTTCGGATCACCACAGATGCCTGCTGGGGCCGCTGCGAGACCTGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| CDS CCA 72 bp | GCAGGCATCTGTGGTGATCCGAAGTCCCCTGCAGCCTaGCTTCTTGGCCATGAAAGTGAATTCCCTCACAGC | + |
|
Preference number: 6 (lower is better) Translates to: AGICGDPKSPAA*LLGHESEFPHS Trigger: GCTGTGAGGGAATTCACTTTCATGGCCAAGAAGCCAGGCTGCAGGGGACTTCGGATCACCACAGATGCCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| CDS CAA 90 bp | CAGCAGGCATCTGTGGTGATCCGAAGTCCCCTGCAGCCTGGCTTCTaGGCCATGAAAGTGAATTCCCTCACAGCACAGCCCACAAAAGTG | + |
|
Preference number: 6 (lower is better) Translates to: QQASVVIRSPLQPGF*AMKVNSLTAQPTKV Trigger: CACTTTTGTGGGCTGTGCTGTGAGGGAATTCACTTTCATGGCCAAGAAGCCAGGCTGCAGGGGACTTCGGATCACCACAGATGCCTGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||
| CDS GCA 72 bp | AAAGTGAATTCCCTCACAGCACAGCCCACAAAAGTGTaGAGGTTCCCACTGGAGCTGCTGAGGACAGAGTCA | + |
|
Preference number: 6 (lower is better) Translates to: KVNSLTAQPTKV*RFPLELLRTES Trigger: TGACTCTGTCCTCAGCAGCTCCAGTGGGAACCTGCACACTTTTGTGGGCTGTGCTGTGAGGGAATTCACTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051079.4 |
||